TransTreeView is a unique tool which give a user the power to view the conservation profile of a binding site across the bacterial tree. The user will choose a pre-computed position weight matrix as well as a set of genes they wish to study. Orthologs of those genes are obtained from all genomes, and the upstream sequences are then searched for pre-computed hits to the PWM. If a hit is present, The tree node is highlighted. You may then hover over a particular node or other columns for that node to obtain additional information about this hit, such as the name of the orthologus gene in the genome, hit score and distance from the downstream gene.
Explain how to use TransTreeView