R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 241 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|2129879|pir||S60608 chlorophyll a/b-binding protein type II precursor,
photosystem I - garden pea >gi|602359|emb|CAA57492.1| (X81962) Type
II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): ______________
Annotated Domains: ___________
__________________________________________________
Database sequence: | | | | | | | 269
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez domain: transit peptide (chloroplast) 1..57
__________________
Minus Strand HSPs:
Score = 340 (119.7 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 62/73 (84%), Positives = 65/73 (89%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW DPLGWG+ QK+K+LR KEIKNGRLAMLAVMGAWFQ IYT TGPIDN FAHLAD
Sbjct: 197 GGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 256
Query: 257 PGHATIFAAFTPK 219
PGHATIFAAFTPK
Sbjct: 257 PGHATIFAAFTPK 269
Score = 64 (22.5 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1
Query: 480 FPNNKSTGTDVG*P---WW-PL 427
FPNNK TGTDVG P W+ PL
Sbjct: 183 FPNNKLTGTDVGYPGGLWFDPL 204
>gi|11277627|pir||T50550 PS I antenna protein Lhca2 [imported] - Arabidopsis
thaliana >gi|4741940|gb|AAD28767.1|AF134120_1 (AF134120) Lhca2
protein [Arabidopsis thaliana]
Length = 257
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 257
0 50 100 150 200 250
Minus Strand HSPs:
Score = 340 (119.7 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 62/73 (84%), Positives = 65/73 (89%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW DPLGWG+G K+K+LR KEIKNGRLAMLAVMGAWFQ IYT TGPIDN FAHLAD
Sbjct: 185 GGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 244
Query: 257 PGHATIFAAFTPK 219
PGHATIFAAFTPK
Sbjct: 245 PGHATIFAAFTPK 257
Score = 64 (22.5 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1
Query: 480 FPNNKSTGTDVG*P---WW-PL 427
FPNNK TGTDVG P W+ PL
Sbjct: 171 FPNNKLTGTDVGYPGGLWFDPL 192
>gi|11277629|pir||T47939 Lhca2 protein - Arabidopsis thaliana
>gi|6850838|emb|CAB71077.1| (AL132962) Lhca2 protein [Arabidopsis
thaliana]
Length = 257
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 257
0 50 100 150 200 250
Minus Strand HSPs:
Score = 340 (119.7 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 62/73 (84%), Positives = 65/73 (89%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW DPLGWG+G K+K+LR KEIKNGRLAMLAVMGAWFQ IYT TGPIDN FAHLAD
Sbjct: 185 GGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 244
Query: 257 PGHATIFAAFTPK 219
PGHATIFAAFTPK
Sbjct: 245 PGHATIFAAFTPK 257
Score = 64 (22.5 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1
Query: 480 FPNNKSTGTDVG*P---WW-PL 427
FPNNK TGTDVG P W+ PL
Sbjct: 171 FPNNKLTGTDVGYPGGLWFDPL 192
>gi|115765|sp|P10708|CB12_LYCES CHLOROPHYLL A-B BINDING PROTEIN 7 PRECURSOR
(LHCI TYPE II CAB-7) >gi|100201|pir||S07408 chlorophyll a/b-binding
protein type II (cab-7) - tomato >gi|19180|emb|CAA32197.1| (X14036)
chlorophyll a/b-binding protein [Lycopersicon esculentum]
>gi|170431|gb|AAA34159.1| (M20241) chlorophyll a/b-binding protein
[Lycopersicon esculentum] >gi|226546|prf||1601518A chlorophyll a/b
binding protein II [Lycopersicon esculentum]
Length = 270
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 270
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM04760: 1..79
DOMO DM00760: CHLOROPHYLLA/B-BINDINGPROTEIN 81..104
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 106..267
Entrez Transmembrane region: POTENTIAL. 228..245
PFAM chloroa_b-bind: Chlorophyll A-B binding 44..270
PRODOM PD009613: CB12(2) Q41038(1) 1..49
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 51..259
__________________
Minus Strand HSPs:
Score = 338 (119.0 bits), Expect = 9.2e-35, Sum P(2) = 9.2e-35
Identities = 62/73 (84%), Positives = 65/73 (89%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW DPLGWG+G KIK+LR KEIKNGRLAMLAVMGAWFQ IYT TGPIDN FAHLAD
Sbjct: 198 GGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 257
Query: 257 PGHATIFAAFTPK 219
PGHATIFAAF+PK
Sbjct: 258 PGHATIFAAFSPK 270
Score = 64 (22.5 bits), Expect = 9.2e-35, Sum P(2) = 9.2e-35
Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1
Query: 480 FPNNKSTGTDVG*P---WW-PL 427
FPNNK TGTDVG P W+ PL
Sbjct: 184 FPNNKLTGTDVGYPGGLWFDPL 205
>gi|115766|sp|P13869|CB12_PETHY CHLOROPHYLL A-B BINDING PROTEIN PRECURSOR (LHCI
TYPE II CAB) >gi|82243|pir||S00442 chlorophyll a/b-binding protein
precursor - garden petunia >gi|169214|gb|AAA33711.1| (M21317)
chlorophyll binding protein precursor [Petunia x hybrida]
>gi|226259|prf||1503272A chlorophyll binding protein [Petunia sp.]
Length = 270
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 270
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 228..245
PFAM chloroa_b-bind: Chlorophyll A-B binding 43..270
PRODOM PD009613: CB12(2) Q41038(1) 1..46
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 51..264
__________________
Minus Strand HSPs:
Score = 338 (119.0 bits), Expect = 9.2e-35, Sum P(2) = 9.2e-35
Identities = 62/73 (84%), Positives = 65/73 (89%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW DPLGWG+G KIK+LR KEIKNGRLAMLAVMGAWFQ IYT TGPIDN FAHLAD
Sbjct: 198 GGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLAD 257
Query: 257 PGHATIFAAFTPK 219
PGHATIFAAF+PK
Sbjct: 258 PGHATIFAAFSPK 270
Score = 64 (22.5 bits), Expect = 9.2e-35, Sum P(2) = 9.2e-35
Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1
Query: 480 FPNNKSTGTDVG*P---WW-PL 427
FPNNK TGTDVG P W+ PL
Sbjct: 184 FPNNKLTGTDVGYPGGLWFDPL 205
>gi|1076724|pir||S52341 LHCI-680, photosystem I antenna protein - barley
>gi|666054|emb|CAA59049.1| (X84308) LHCI-680, photosystem I antenna
protein [Hordeum vulgare]
Length = 255
Frame -1 hits (HSPs): ______
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 255
0 50 100 150 200 250
Minus Strand HSPs:
Score = 322 (113.3 bits), Expect = 4.4e-33, Sum P(2) = 4.4e-33
Identities = 59/73 (80%), Positives = 63/73 (86%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW DPLG+GTG +K+K+LR KEIKNGRLAMLAVMGAWFQ YT TGPIDN FAHLAD
Sbjct: 183 GGLWFDPLGYGTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLAD 242
Query: 257 PGHATIFAAFTPK 219
PGHATIF AF PK
Sbjct: 243 PGHATIFRAFAPK 255
Score = 64 (22.5 bits), Expect = 4.4e-33, Sum P(2) = 4.4e-33
Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1
Query: 480 FPNNKSTGTDVG*P---WW-PL 427
FPNNK TGTDVG P W+ PL
Sbjct: 169 FPNNKLTGTDVGYPGGLWFDPL 190
>gi|99486|pir||S17695 chlorophyll a/b-binding protein (clone pINEab 31) -
Scotch pine >gi|20792|emb|CAA41406.1| (X58516) Type II chlorophyll
a /b-binding protein [Pinus sylvestris]
Length = 278
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): ______________
Annotated Domains: ________________ ______________________________
__________________________________________________
Database sequence: | | | | | | | 278
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM04760: 1..85
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 116..275
__________________
Minus Strand HSPs:
Score = 321 (113.0 bits), Expect = 5.6e-33, Sum P(2) = 5.6e-33
Identities = 59/73 (80%), Positives = 63/73 (86%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW DPLGWG+G +KIK+LR KEIKNGRLAMLAVMGAWFQ YT TGPIDN AHLAD
Sbjct: 206 GGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLLAHLAD 265
Query: 257 PGHATIFAAFTPK 219
PGHATIFAAF+ K
Sbjct: 266 PGHATIFAAFSSK 278
Score = 64 (22.5 bits), Expect = 5.6e-33, Sum P(2) = 5.6e-33
Identities = 15/22 (68%), Positives = 16/22 (72%), Frame = -1
Query: 480 FPNNKSTGTDVG*P---WW-PL 427
FPNNK TGTDVG P W+ PL
Sbjct: 192 FPNNKLTGTDVGYPGGLWFDPL 213
>gi|7443233|pir||S47480 chlorophyll a/b-binding protein type II, photosystem I
- Lolium temulentum >gi|551047|emb|CAA55864.1| (X79277) type II
LHCI [Lolium temulentum]
Length = 253
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | || 253
0 50 100 150 200 250
Minus Strand HSPs:
Score = 317 (111.6 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 58/73 (79%), Positives = 62/73 (84%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW DPLG+G G +K+K+LR KEIKNGRLAMLAVMGAWFQ YT TGPIDN FAHLAD
Sbjct: 181 GGLWFDPLGYGNGSPEKLKELRTKEIKNGRLAMLAVMGAWFQAEYTGTGPIDNLFAHLAD 240
Query: 257 PGHATIFAAFTPK 219
PGHATIF AF PK
Sbjct: 241 PGHATIFRAFAPK 253
>gi|2306981|gb|AAB65793.1| (AF010321) photosystem I antenna protein [Oryza
sativa]
Length = 265
Frame -2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 265
0 50 100 150 200 250
Minus Strand HSPs:
Score = 312 (109.8 bits), Expect = 6.4e-27, P = 6.4e-27
Identities = 57/72 (79%), Positives = 62/72 (86%), Frame = -2
Query: 434 GLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLADP 255
GLW DPLGWGT +KIK+LR KEIKNGR+AMLAVMGAWFQ +T TGPIDN FAH+ADP
Sbjct: 194 GLWLDPLGWGTVSPEKIKELRTKEIKNGRVAMLAVMGAWFQAEHTGTGPIDNFFAHVADP 253
Query: 254 GHATIFAAFTPK 219
GHATIF AFTPK
Sbjct: 254 GHATIFQAFTPK 265
>gi|1084336|pir||S46295 chlorophyll a/b-binding protein type II - Arabidopsis
thaliana >gi|541565|gb|AAA57542.1| (U03395) PSI type II chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 271
Frame -2 hits (HSPs): ______________
Annotated Domains: ___________________________________
__________________________________________________
Database sequence: | | | | | | | 271
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00760: CHLOROPHYLLA/B-BINDINGPROTEIN 83..105
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 107..268
__________________
Minus Strand HSPs:
Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 42/71 (59%), Positives = 50/71 (70%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW D + WG G + + LR KEIKNGRLAMLA +G FQ YT+ PI+N AHLAD
Sbjct: 199 GGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLAD 258
Query: 257 PGHATIFAAFT 225
PGH +F+AFT
Sbjct: 259 PGHCNVFSAFT 269
>gi|8954053|gb|AAF82226.1|AC069143_2 (AC069143) Contains similarity to a
chlorophyll a/b-binding protein type II from Arabidopsis thaliana
gi|S46295 and contains a chlorophyll A-B binding proteins PF|00504
domain
Length = 267
Frame -2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 267
0 50 100 150 200 250
Minus Strand HSPs:
Score = 210 (73.9 bits), Expect = 4.1e-16, P = 4.1e-16
Identities = 39/68 (57%), Positives = 47/68 (69%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GGLW D + WG G + + LR KEIKNGRLAMLA +G FQ YT+ PI+N AHLAD
Sbjct: 198 GGLWFDFMMWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQATYTSQDPIENLMAHLAD 257
Query: 257 PGHATIFA 234
PGH +F+
Sbjct: 258 PGHCNVFS 265
>gi|7271947|gb|AAF44703.1|AF241525_1 (AF241525) chlorophyll a/b-binding protein
type III [Alonsoa meridionalis]
Length = 193
Frame -2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Minus Strand HSPs:
Score = 163 (57.4 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 31/63 (49%), Positives = 43/63 (68%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + +PLG+G + +K+L+ KE+KNGRLAMLA++G + Q + T GP N HLAD
Sbjct: 131 GGPFFNPLGFGKD-EKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLAD 189
Query: 257 PGH 249
P H
Sbjct: 190 PWH 192
>gi|99487|pir||S17696 chlorophyll a/b-binding protein (clone pINEab 43) -
Scotch pine >gi|20794|emb|CAA41407.1| (X58517) Type III chlorophyll
a /b-binding protein [Pinus sylvestris]
Length = 286
Frame -2 hits (HSPs): ____________
Annotated Domains: _______________________________
__________________________________________________
Database sequence: | | | | | | | 286
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 114..283
__________________
Minus Strand HSPs:
Score = 159 (56.0 bits), Expect = 2.2e-10, P = 2.2e-10
Identities = 31/63 (49%), Positives = 42/63 (66%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG +PLG+G + +K+L+ KE+KNGRLAMLA++G + Q + T GP N HLAD
Sbjct: 215 GGPLFNPLGFGKD-EKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLDHLAD 273
Query: 257 PGH 249
P H
Sbjct: 274 PVH 276
>gi|115764|sp|P12360|CB11_LYCES CHLOROPHYLL A-B BINDING PROTEIN 6A PRECURSOR
(LHCI TYPE I CAB-6A) (LIGHT-HARVESTING COMPLEX I 26 KD PROTEIN)
>gi|170494|gb|AAA34186.1| (J03558) chlorophyll a/b binding protein
precursor [Lycopersicon esculentum]
Length = 246
Frame -2 hits (HSPs): _______________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00760: CHLOROPHYLLA/B-BINDINGPROTEIN 63..85
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 87..238
Entrez Transmembrane region: POTENTIAL. 89..108
Entrez Transmembrane region: POTENTIAL. 142..161
Entrez Transmembrane region: POTENTIAL. 198..219
Entrez binding site: CHLOROPHYLL (POTENTIAL). 155
PFAM chloroa_b-bind: Chlorophyll A-B binding 21..246
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 22..244
__________________
Minus Strand HSPs:
Score = 155 (54.6 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 35/73 (47%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQ-XIYTATGPIDNXFAHLA 261
GG + DPLG+ K ++L+ KEIKNGRLA+LA++G Q Y TGP++N HLA
Sbjct: 170 GGAF-DPLGYSKD-PAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLA 227
Query: 260 DPGHATIFAAFTPK 219
DP H I PK
Sbjct: 228 DPWHNNIGDVIIPK 241
>gi|430947|gb|AAA18206.1| (U01103) PSI type III chlorophyll a/b-binding protein
[Arabidopsis thaliana]
Length = 273
Frame -2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Minus Strand HSPs:
Score = 157 (55.3 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 30/61 (49%), Positives = 42/61 (68%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + +PLG+G + +K+L+ KE+KNGRLAMLA++G + Q + T GP N HLAD
Sbjct: 202 GGPFFNPLGFGKD-EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLAD 260
Query: 257 P 255
P
Sbjct: 261 P 261
>gi|4585882|gb|AAD25555.1|AC005850_12 (AC005850) PSI type III chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 273
Frame -2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Minus Strand HSPs:
Score = 157 (55.3 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 30/61 (49%), Positives = 42/61 (68%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + +PLG+G + +K+L+ KE+KNGRLAMLA++G + Q + T GP N HLAD
Sbjct: 202 GGPFFNPLGFGKD-EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLAD 260
Query: 257 P 255
P
Sbjct: 261 P 261
>gi|5902596|gb|AAD55568.1|AF110786_1 (AF110786) light harvesting complex a
protein [Volvox carteri f. nagariensis]
Length = 243
Frame -2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Minus Strand HSPs:
Score = 153 (53.9 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 34/63 (53%), Positives = 40/63 (63%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG++ DPLG K+ D + KEIKNGRLAM+A +G Q T GPIDN AHLAD
Sbjct: 170 GGIF-DPLGLSKD-ADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNLAAHLAD 227
Query: 257 PGH 249
P H
Sbjct: 228 PWH 230
>gi|115813|sp|P27522|CB13_LYCES CHLOROPHYLL A-B BINDING PROTEIN 8 PRECURSOR
(LHCI TYPE III CAB-8) >gi|19182|emb|CAA33330.1| (X15258) Type III
chlorophyll a/b-binding protein [Lycopersicon esculentum]
Length = 273
Frame -2 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00760: CHLOROPHYLLA/B-BINDINGPROTEIN 70..96
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 98..270
Entrez Transmembrane region: POTENTIAL. 231..247
PFAM chloroa_b-bind: Chlorophyll A-B binding 31..273
PRODOM PD192829: CB13_LYCES 1..30
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 32..264
__________________
Minus Strand HSPs:
Score = 155 (54.6 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/61 (50%), Positives = 41/61 (67%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG +PLG+G + +K+L+ KEIKNGRLAMLA++G + Q + T GP N HLAD
Sbjct: 202 GGPLFNPLGFGKD-EKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLAD 260
Query: 257 P 255
P
Sbjct: 261 P 261
>gi|82080|pir||S04125 chlorophyll a/b-binding protein type III precursor -
tomato >gi|226872|prf||1609235A chlorophyll a/b binding protein
[Lycopersicon esculentum]
Length = 273
Frame -2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Minus Strand HSPs:
Score = 155 (54.6 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/61 (50%), Positives = 41/61 (67%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG +PLG+G + +K+L+ KEIKNGRLAMLA++G + Q + T GP N HLAD
Sbjct: 202 GGPLFNPLGFGKD-EKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLAD 260
Query: 257 P 255
P
Sbjct: 261 P 261
>gi|7443229|pir||T06411 probable chlorophyll a/b-binding protein type III
precursor - garden pea chloroplast >gi|309673|gb|AAA84545.1|
(L19651) light harvesting protein [Pisum sativum]
Length = 275
Frame -2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 275
0 50 100 150 200 250
Minus Strand HSPs:
Score = 154 (54.2 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 29/61 (47%), Positives = 42/61 (68%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + +PLG+G + +K+L+ KE+KNGRLAMLA++G + Q + T GP N H+AD
Sbjct: 204 GGPFFNPLGFGKD-EKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVAD 262
Query: 257 P 255
P
Sbjct: 263 P 263
>gi|4741942|gb|AAD28768.1|AF134121_1 (AF134121) Lhca5 protein [Arabidopsis
thaliana]
Length = 256
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Minus Strand HSPs:
Score = 152 (53.5 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 35/71 (49%), Positives = 43/71 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG +PLG Q D + KEIKNGRLAM+A++G + Q T TGPIDN HL++
Sbjct: 183 GGPLLNPLGLAKDV-QNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 241
Query: 257 PGHATIFAA-FT 225
P H TI FT
Sbjct: 242 PWHKTIIQTLFT 253
>gi|12321000|gb|AAG50618.1|AC083835_3 (AC083835) light-harvesting complex
protein [Arabidopsis thaliana]
Length = 256
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Minus Strand HSPs:
Score = 152 (53.5 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 35/71 (49%), Positives = 43/71 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG +PLG Q D + KEIKNGRLAM+A++G + Q T TGPIDN HL++
Sbjct: 183 GGPLLNPLGLAKDV-QNAHDWKLKEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSN 241
Query: 257 PGHATIFAA-FT 225
P H TI FT
Sbjct: 242 PWHKTIIQTLFT 253
>gi|82078|pir||S00443 chlorophyll a/b-binding protein type I precursor (cab-6A)
- tomato >gi|170388|gb|AAA34140.1| (M17633) chlorophyll a/b-binding
protein [Lycopersicon esculentum] >gi|225895|prf||1402358A
photosystem I protein CAB [Lycopersicon esculentum]
Length = 246
Frame -2 hits (HSPs): _______________
Annotated Domains: _________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
Entrez domain: transit peptide (chloroplast) 1..44
__________________
Minus Strand HSPs:
Score = 151 (53.2 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 35/73 (47%), Positives = 44/73 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQ-XIYTATGPIDNXFAHLA 261
GG + DPLG+ K ++L+ KEIKNGRLA+LA +G Q Y TGP++N HLA
Sbjct: 170 GGAF-DPLGYSKD-PAKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
Query: 260 DPGHATIFAAFTPK 219
DP H I PK
Sbjct: 228 DPWHNNIGDVIIPK 241
>gi|282865|pir||S25435 chlorophyll a/b-binding protein F28P10.130 - Arabidopsis
thaliana >gi|16207|emb|CAA39534.1| (X56062) chlorophyll A/B-binding
protein [Arabidopsis thaliana] >gi|166644|gb|AAA32759.1| (M85150)
chlorophyll a/b-binding protein [Arabidopsis thaliana]
>gi|4678304|emb|CAB41095.1| (AL049655) chlorophyll a/b-binding
protein [Arabidopsis thaliana]
>gi|11692880|gb|AAG40043.1|AF324692_1 (AF324692) F28P10.130
[Arabidopsis thaliana] >gi|11762180|gb|AAG40368.1|AF325016_1
(AF325016) F28P10.130 [Arabidopsis thaliana]
>gi|11908038|gb|AAG41448.1|AF326866_1 (AF326866) putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
>gi|12642856|gb|AAK00370.1|AF339688_1 (AF339688) putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 241
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 241
0 50 100 150 200
Minus Strand HSPs:
Score = 149 (52.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 33/66 (50%), Positives = 44/66 (66%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQ-XIYTATGPIDNXFAHLA 261
GG + DPLG+ +K+++L+ KEIKNGRLA+LA +G Q Y TGP++N HLA
Sbjct: 169 GGAF-DPLGYSKD-PKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 260 DPGHATI 240
DP H I
Sbjct: 227 DPWHNNI 233
>gi|542128|pir||PQ0764 chlorophyll a/b-binding protein type Ib, 21K chain
precursor - barley (fragment) >gi|544700|gb|AAB29485.1| (S68728)
light-harvesting complex I, LHC I [Hordeum vulgare=barley, Prato,
Peptide Chloroplast, 221 aa]
Length = 221
Frame -2 hits (HSPs): _________________
Annotated Domains: _____
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
__________________
Annotated Domains:
Entrez domain: transit peptide (chloroplast) (f 1..20
__________________
Minus Strand HSPs:
Score = 148 (52.1 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 35/73 (47%), Positives = 44/73 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQ-XIYTATGPIDNXFAHLA 261
GG + DPLG+ K ++L+ KEIKNGRLAMLA +G Q Y TGP++N HLA
Sbjct: 145 GGAF-DPLGFSKD-PAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLA 202
Query: 260 DPGHATIFAAFTPK 219
DP H I P+
Sbjct: 203 DPWHNNIGDIVIPR 216
>gi|6685157|gb|AAF23819.1|AF218305_2 (AF218305) chlorophyll a/b binding protein
precursor [Hordeum vulgare]
Length = 245
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
Minus Strand HSPs:
Score = 148 (52.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 35/73 (47%), Positives = 44/73 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQ-XIYTATGPIDNXFAHLA 261
GG + DPLG+ K ++L+ KEIKNGRLAMLA +G Q Y TGP++N HLA
Sbjct: 169 GGAF-DPLGFSKD-PAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLA 226
Query: 260 DPGHATIFAAFTPK 219
DP H I P+
Sbjct: 227 DPWHNNIGDIVIPR 240
>gi|625547|pir||S28827 chlorophyll a/b-binding protein type I - common tobacco
>gi|493723|emb|CAA45523.1| (X64198) photosystem I light-harvesting
chlorophyll a/b-binding protein [Nicotiana tabacum]
Length = 245
Frame -2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
Minus Strand HSPs:
Score = 147 (51.7 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 33/66 (50%), Positives = 43/66 (65%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQ-XIYTATGPIDNXFAHLA 261
GG + DPLG+ +K ++L+ KEIKNGRLA+LA +G Q Y TGP++N HLA
Sbjct: 170 GGAF-DPLGYSKD-PKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 227
Query: 260 DPGHATI 240
DP H I
Sbjct: 228 DPWHNNI 234
>gi|7443234|pir||S72223 light harvesting complex A protein precursor - Volvox
carteri >gi|732534|gb|AAB40979.1| (U22329) light harvesting complex
a [Volvox carteri]
Length = 264
Frame -2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 264
0 50 100 150 200 250
Minus Strand HSPs:
Score = 148 (52.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 33/67 (49%), Positives = 40/67 (59%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG++ DP GW G +K L+ KEIKNGRLAMLA G Q T T P+ N HLAD
Sbjct: 195 GGIF-DPFGWSKG---DMKSLKTKEIKNGRLAMLAFAGFAAQAYTTGTTPLKNLATHLAD 250
Query: 257 PGHATIF 237
P T++
Sbjct: 251 PWATTVW 257
>gi|100573|pir||S21386 chlorophyll a/b-binding protein CP29 precursor - barley
>gi|18958|emb|CAA44777.1| (X63052) Precursor of CP29, core
chlorophyll a/b binding (CAB) protein of photosystem II (PSII)
[Hordeum vulgare] >gi|445122|prf||1908428A chlorophyll a/b-binding
protein [Hordeum vulgare]
Length = 286
Frame -2 hits (HSPs): ____ ___________
Annotated Domains: _________________________________
__________________________________________________
Database sequence: | | | | | | | 286
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00760: CHLOROPHYLLA/B-BINDINGPROTEIN 95..117
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 119..276
__________________
Minus Strand HSPs:
Score = 131 (46.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 30/61 (49%), Positives = 38/61 (62%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG T Q L+ KEIKNGRLAM +++G + Q T GP +N AHL+D
Sbjct: 209 GGPF-DPLGLATDPDQAAL-LKVKEIKNGRLAMFSMLGFFIQAYVTGEGPFENLCAHLSD 266
Query: 257 P 255
P
Sbjct: 267 P 267
Score = 36 (12.7 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 6/14 (42%), Positives = 7/14 (50%), Frame = -2
Query: 461 PEXMWVNXGGLWXD 420
PE +W G L D
Sbjct: 149 PEAVWFKTGALLLD 162
>gi|7271945|gb|AAF44702.1|AF241524_1 (AF241524) chlorophyll a/b-binding protein
type I [Asarina barclaiana]
Length = 169
Frame -2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 169
0 50 100 150
Minus Strand HSPs:
Score = 145 (51.0 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 32/63 (50%), Positives = 42/63 (66%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQ-XIYTATGPIDNXFAHLA 261
GG + DPLG+ +K ++L+ KEIKNGRLA+LA +G Q Y TGP++N HLA
Sbjct: 106 GGAF-DPLGYSKD-PKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA 163
Query: 260 DPGH 249
DP H
Sbjct: 164 DPWH 167
>gi|115793|sp|P27523|CB23_HORVU CHLOROPHYLL A-B BINDING PROTEIN OF LHCII TYPE
III PRECURSOR (CAB) >gi|72749|pir||CDBH3 chlorophyll a/b-binding
protein type III precursor - barley >gi|19023|emb|CAA44881.1|
(X63197) type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Frame -2 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 100..261
Entrez Transmembrane region: POTENTIAL. 100..119
Entrez Transmembrane region: POTENTIAL. 153..173
Entrez Transmembrane region: POTENTIAL. 222..238
PFAM chloroa_b-bind: Chlorophyll A-B binding 33..267
PRODOM PD035568: CB23_HORVU 1..34
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 36..267
__________________
Minus Strand HSPs:
Score = 147 (51.7 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 34/74 (45%), Positives = 44/74 (59%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG +L+ KEIKNGRLAM ++ G + Q I T GP++N F HL D
Sbjct: 193 GGQYFDPLGLADD-PVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDD 251
Query: 257 P--GHATIFAA-FTP 222
P +A +FA F P
Sbjct: 252 PVANNAWVFATKFAP 266
>gi|115826|sp|P22686|CB2_CHLMO CHLOROPHYLL A-B BINDING PROTEIN OF LHCII TYPE I
PRECURSOR (CAB) (LHCP) >gi|99371|pir||S14518 chlorophyll
a/b-binding protein - Chlamydomonas moewusii
>gi|18063|emb|CAA38635.1| (X54856) chlorophyll a/b-binding protein
[Chlamydomonas moewusii]
Length = 256
Frame -2 hits (HSPs): ______________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 89..249
Entrez Transmembrane region: POTENTIAL. 89..108
Entrez Transmembrane region: POTENTIAL. 141..161
Entrez Transmembrane region: POTENTIAL. 210..226
PFAM chloroa_b-bind: Chlorophyll A-B binding 25..255
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 25..253
__________________
Minus Strand HSPs:
Score = 145 (51.0 bits), Expect = 5.6e-09, P = 5.6e-09
Identities = 35/69 (50%), Positives = 39/69 (56%), Frame = -2
Query: 422 DPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLADPGHAT 243
DPLG +L+ KEIKNGRLAM + G + Q I T GPI N HLADPG
Sbjct: 186 DPLGLADD-PDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244
Query: 242 IFAA---FTP 222
FAA FTP
Sbjct: 245 AFAAATKFTP 254
>gi|16374|emb|CAA27542.1| (X03908) chlorophyll a/b binding protein (LHCP AB
180) [Arabidopsis thaliana]
Length = 233
Frame -2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 233
0 50 100 150 200
Minus Strand HSPs:
Score = 142 (50.0 bits), Expect = 8.0e-09, P = 8.0e-09
Identities = 35/73 (47%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG T + +L+ KE+KNGRLAM ++ G + Q I T GPI+N HLAD
Sbjct: 159 GGSF-DPLGLATD-PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 216
Query: 257 P--GHATIFAA-FTP 222
P +A FA F P
Sbjct: 217 PVNNNAWAFATNFVP 231
>gi|1006704|emb|CAA89823.1| (Z49749) light-harvesting chlorophyll a/b binding
protein of photosystem II [Pseudotsuga menziesii]
Length = 234
Frame -2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 234
0 50 100 150 200
Minus Strand HSPs:
Score = 142 (50.0 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 34/73 (46%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG + +L+ KE+KNGRLAM ++ G + Q I T GPI+N F HLAD
Sbjct: 160 GGAF-DPLGLADD-PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLAD 217
Query: 257 P--GHATIFAA-FTP 222
P +A +A F P
Sbjct: 218 PTANNAWAYATNFVP 232
>gi|19184|emb|CAA43590.1| (X61287) Type I (26 kD) CP29 polypeptide
[Lycopersicon esculentum]
Length = 286
Frame -2 hits (HSPs): ____ ___________
__________________________________________________
Database sequence: | | | | | | | 286
0 50 100 150 200 250
Minus Strand HSPs:
Score = 127 (44.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 29/61 (47%), Positives = 38/61 (62%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG Q L+ KEIKNGRLAM +++G + Q T GP++N AHL+D
Sbjct: 209 GGPF-DPLGLAKDPDQAAI-LKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSD 266
Query: 257 P 255
P
Sbjct: 267 P 267
Score = 36 (12.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 6/14 (42%), Positives = 7/14 (50%), Frame = -2
Query: 461 PEXMWVNXGGLWXD 420
PE +W G L D
Sbjct: 149 PEAVWFKTGALLLD 162
>gi|100200|pir||S16294 chlorophyll a/b-binding protein type I precursor -
tomato
Length = 286
Frame -2 hits (HSPs): ____ ___________
__________________________________________________
Database sequence: | | | | | | | 286
0 50 100 150 200 250
Minus Strand HSPs:
Score = 127 (44.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 29/61 (47%), Positives = 38/61 (62%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG Q L+ KEIKNGRLAM +++G + Q T GP++N AHL+D
Sbjct: 209 GGPF-DPLGLAKDPDQAAI-LKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSD 266
Query: 257 P 255
P
Sbjct: 267 P 267
Score = 36 (12.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
Identities = 6/14 (42%), Positives = 7/14 (50%), Frame = -2
Query: 461 PEXMWVNXGGLWXD 420
PE +W G L D
Sbjct: 149 PEAVWFKTGALLLD 162
>gi|227138|prf||1615137A chlorophyll a/b binding protein P25 [Pinus sylvestris]
Length = 226
Frame -2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 226
0 50 100 150 200
Minus Strand HSPs:
Score = 141 (49.6 bits), Expect = 8.6e-09, P = 8.6e-09
Identities = 34/73 (46%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG + +L+ KEIKNGRLAM ++ G + Q I T GPI+N + HLAD
Sbjct: 152 GGAF-DPLGLADD-PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 209
Query: 257 P--GHATIFAA-FTP 222
P +A +A F P
Sbjct: 210 PVANNAWAYATNFVP 224
>gi|914283|gb|AAB34067.1| light-harvesting complex b type 2, Lhcb2 [Ginkgo
biloba, 3-4 week old seedlings, Peptide Partial, 130 aa]
Length = 130
Frame -2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 130
0 50 100
Minus Strand HSPs:
Score = 140 (49.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 34/73 (46%), Positives = 44/73 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG +L+ KE+KNGRLAM ++ G + Q I T GPI+N + HLAD
Sbjct: 56 GGAF-DPLGLADD-PDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 113
Query: 257 P--GHATIFAA-FTP 222
P +A FA F P
Sbjct: 114 PVNNNAWAFATNFVP 128
>gi|12324161|gb|AAG52048.1|AC022455_2 (AC022455) chlorophyll A-B-binding
protein 2 precursor, 5' partial; 1-750 [Arabidopsis thaliana]
Length = 249
Frame -2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Minus Strand HSPs:
Score = 142 (50.0 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 35/73 (47%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG T + +L+ KE+KNGRLAM ++ G + Q I T GPI+N HLAD
Sbjct: 175 GGSF-DPLGLATD-PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 232
Query: 257 P--GHATIFAA-FTP 222
P +A FA F P
Sbjct: 233 PVNNNAWAFATNFVP 247
>gi|322391|pir||S31865 chlorophyll a/b-binding protein Lhcb5 - Scotch pine
>gi|22750|emb|CAA78900.1| (Z16408) Lhcb5 protein [Pinus sylvestris]
>gi|1093837|prf||2104448A Lhcb5 gene [Pinus sylvestris]
Length = 302
Frame -2 hits (HSPs): ___ __________
Annotated Domains: ___________________________
__________________________________________________
Database sequence: | | | | | | || 302
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 137..292
__________________
Minus Strand HSPs:
Score = 127 (44.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/61 (47%), Positives = 38/61 (62%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG Q L+ KEIKNGRLAM +++G + Q T GP++N AHL+D
Sbjct: 225 GGPF-DPLGLAKDPDQ-FALLKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSD 282
Query: 257 P 255
P
Sbjct: 283 P 283
Score = 36 (12.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 6/14 (42%), Positives = 7/14 (50%), Frame = -2
Query: 461 PEXMWVNXGGLWXD 420
PE +W G L D
Sbjct: 165 PEAVWFKTGALLLD 178
>gi|3789954|gb|AAC67558.1| (AF094776) chlorophyll a/b-binding protein precursor
[Oryza sativa]
Length = 241
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 241
0 50 100 150 200
Minus Strand HSPs:
Score = 141 (49.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/73 (45%), Positives = 44/73 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQ-XIYTATGPIDNXFAHLA 261
GG + DPLG+ K ++ + KEIKNGRLAMLA +G Q Y TGP++N +HL+
Sbjct: 166 GGAF-DPLGFSKD-PVKFEEYKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLASHLS 223
Query: 260 DPGHATIFAAFTPK 219
DP H I P+
Sbjct: 224 DPWHNNIGDIIIPR 237
>gi|7443228|pir||T04049 chlorophyll a/b-binding protein F24G24.140 -
Arabidopsis thaliana >gi|4538963|emb|CAB39787.1| (AL049488)
chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
>gi|4741958|gb|AAD28776.1|AF134129_1 (AF134129) Lhcb5 protein
[Arabidopsis thaliana] >gi|7267731|emb|CAB78157.1| (AL161517)
chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
>gi|11908106|gb|AAG41482.1|AF326900_1 (AF326900) chlorophyll
a/b-binding protein-like protein [Arabidopsis thaliana]
>gi|12642916|gb|AAK00400.1|AF339718_1 (AF339718) putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 280
Frame -2 hits (HSPs): ___ ___________
__________________________________________________
Database sequence: | | | | | | | 280
0 50 100 150 200 250
Minus Strand HSPs:
Score = 125 (44.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 29/61 (47%), Positives = 37/61 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG Q L+ KEIKNGRLAM A++G + Q T GP++N HL+D
Sbjct: 203 GGPF-DPLGLAKDPEQGAL-LKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSD 260
Query: 257 P 255
P
Sbjct: 261 P 261
Score = 36 (12.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 6/14 (42%), Positives = 7/14 (50%), Frame = -2
Query: 461 PEXMWVNXGGLWXD 420
PE +W G L D
Sbjct: 143 PEAVWFKTGALLLD 156
>gi|1262847|gb|AAB19040.1| (U51632) type 2 light-harvesting chlorophyll
a/b-binding polypeptide [Pinus palustris]
Length = 246
Frame -2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
Minus Strand HSPs:
Score = 141 (49.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 34/73 (46%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG + +L+ KEIKNGRLAM ++ G + Q I T GPI+N + HLAD
Sbjct: 172 GGAF-DPLGLADD-PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLAD 229
Query: 257 P--GHATIFAA-FTP 222
P +A +A F P
Sbjct: 230 PVANNAWAYATNFVP 244
>gi|7443232|pir||T06193 chlorophyll a/b-binding protein - barley (fragment)
>gi|3153151|emb|CAA06961.1| (AJ006296) chlorophyll a/b-binding
protein [Hordeum vulgare]
Length = 75
Frame -2 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 75
0 20 40 60
Minus Strand HSPs:
Score = 139 (48.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 31/70 (44%), Positives = 41/70 (58%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG +K + L+ EIK+ RLAM+A +G Q T GP++N HL+D
Sbjct: 4 GGSYFDPLGLAAD-PEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSD 62
Query: 257 PGHATIFAAF 228
P H TIF F
Sbjct: 63 PLHTTIFDTF 72
>gi|99600|pir||S22022 chlorophyll a/b-binding protein - upland cotton
Length = 264
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 264
0 50 100 150 200 250
Minus Strand HSPs:
Score = 142 (50.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 35/73 (47%), Positives = 44/73 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG +L+ KEIKNGRLAM ++ G + Q I T GPI+N F HLAD
Sbjct: 190 GGAF-DPLGLADD-PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLAD 247
Query: 257 P--GHATIFAA-FTP 222
P +A +A F P
Sbjct: 248 PVANNAWAYATNFVP 262
>gi|1345698|sp|P27518|CB21_GOSHI CHLOROPHYLL A-B BINDING PROTEIN 151 PRECURSOR
(LHCII TYPE II CAB-151) (LHCP) >gi|99601|pir||S20917 chlorophyll
a/b-binding protein - upland cotton >gi|452314|emb|CAA38025.1|
(X54090) chlorophyll ab binding protein [Gossypium hirsutum]
Length = 265
Frame -2 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 265
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 99..258
Entrez Transmembrane region: POTENTIAL. 99..118
Entrez Transmembrane region: POTENTIAL. 151..171
Entrez Transmembrane region: POTENTIAL. 219..235
PFAM chloroa_b-bind: Chlorophyll A-B binding 37..264
PRODOM PD006255: 1..31
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 37..263
__________________
Minus Strand HSPs:
Score = 142 (50.0 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 35/73 (47%), Positives = 44/73 (60%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG +L+ KEIKNGRLAM ++ G + Q I T GPI+N F HLAD
Sbjct: 191 GGAF-DPLGLADD-PDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLAD 248
Query: 257 P--GHATIFAA-FTP 222
P +A +A F P
Sbjct: 249 PVANNAWAYATNFVP 263
>gi|115778|sp|P13851|CB21_SINAL CHLOROPHYLL A-B BINDING PROTEIN 1 PRECURSOR
(LHCII TYPE I CAB-1) (LHCP) >gi|282896|pir||S22511 chlorophyll
a/b-binding protein precursor - white mustard
>gi|21138|emb|CAA34459.1| (X16436) chlorophyll a/b-binding protein
(AA 1-266) [Sinapis alba] >gi|21140|emb|CAA33903.1| (X15894)
chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Frame -2 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 266
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 99..118
Entrez Transmembrane region: POTENTIAL. 151..171
Entrez Transmembrane region: POTENTIAL. 220..236
PFAM chloroa_b-bind: Chlorophyll A-B binding 35..265
PRODOM PD001000: CB21(6) CB22(5) CB23(3) 1..32
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 37..264
__________________
Minus Strand HSPs:
Score = 142 (50.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 35/73 (47%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG T + +L+ KEIKNGRLAM ++ G + Q I T GP++N HLAD
Sbjct: 192 GGSF-DPLGLATD-PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAD 249
Query: 257 P--GHATIFAA-FTP 222
P +A FA F P
Sbjct: 250 PVNNNAWAFATNFVP 264
>gi|115767|sp|P04777|CB21_ARATH CHLOROPHYLL A-B BINDING PROTEIN 165/180
PRECURSOR (LHCII TYPE I CAB-165/180) (LHCP) >gi|81603|pir||A29280
chlorophyll a/b-binding protein ab165 - Arabidopsis thaliana
>gi|16368|emb|CAA27540.1| (X03907) chlorophyll a/b binding protein
(LHCP AB 65) [Arabidopsis thaliana] >gi|16372|emb|CAA27541.1|
(X03908) chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana] >gi|9972354|gb|AAG10604.1|AC008030_4 (AC008030)
chlorophyll a/b-binding protein [Arabidopsis thaliana]
>gi|9972355|gb|AAG10605.1|AC008030_5 (AC008030) chlorophyll
a/b-binding protein [Arabidopsis thaliana]
Length = 267
Frame -2 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 267
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00760: CHLOROPHYLLA/B-BINDINGPROTEIN 74..96
DOMO DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN 98..260
Entrez Transmembrane region: POTENTIAL. 100..119
Entrez Transmembrane region: POTENTIAL. 152..172
Entrez Transmembrane region: POTENTIAL. 221..237
PFAM chloroa_b-bind: Chlorophyll A-B binding 35..266
PRODOM PD001000: CB21(6) CB22(5) CB23(3) 1..32
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 37..265
__________________
Minus Strand HSPs:
Score = 142 (50.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 35/73 (47%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG T + +L+ KE+KNGRLAM ++ G + Q I T GPI+N HLAD
Sbjct: 193 GGSF-DPLGLATD-PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 250
Query: 257 P--GHATIFAA-FTP 222
P +A FA F P
Sbjct: 251 PVNNNAWAFATNFVP 265
>gi|115783|sp|P04778|CB22_ARATH CHLOROPHYLL A-B BINDING PROTEIN 2 PRECURSOR
(LHCII TYPE I CAB-2) (CAB-140) (LHCP) >gi|16376|emb|CAA27543.1|
(X03909) chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana] >gi|9972353|gb|AAG10603.1|AC008030_3 (AC008030) Putative
chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Frame -2 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 267
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 100..119
Entrez Transmembrane region: POTENTIAL. 152..172
Entrez Transmembrane region: POTENTIAL. 221..237
PFAM chloroa_b-bind: Chlorophyll A-B binding 35..266
PRODOM PD001000: CB21(6) CB22(5) CB23(3) 1..32
PRODOM PD000275: CB21(11) CB23(9) CB22(8) 37..265
__________________
Minus Strand HSPs:
Score = 142 (50.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 35/73 (47%), Positives = 45/73 (61%), Frame = -2
Query: 437 GGLWXDPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLAD 258
GG + DPLG T + +L+ KE+KNGRLAM ++ G + Q I T GPI+N HLAD
Sbjct: 193 GGSF-DPLGLATD-PEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLAD 250
Query: 257 P--GHATIFAA-FTP 222
P +A FA F P
Sbjct: 251 PVNNNAWAFATNFVP 265
>gi|115790|sp|P15192|CB22_PINSY CHLOROPHYLL A-B BINDING PROTEIN TYPE II 2 (CAB)
(LHCP) >gi|81417|pir||S07996 chlorophyll a/b-binding protein II/2 -
Scotch pine (fragment) >gi|169376|gb|AAA33776.1| (M37489)
chlorophyll a/b-binding protein [Pinus sylvestris]
Length = 150
Frame -2 hits (HSPs): ________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 150
0 50 100
__________________
Annotated Domains:
PFAM chloroa_b-bind: Chlorophyll A-B binding 1..149
__________________
Minus Strand HSPs:
Score = 138 (48.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/69 (47%), Positives = 42/69 (60%), Frame = -2
Query: 422 DPLGWGTGFXQKIKDLRXKEIKNGRLAMLAVMGAWFQXIYTATGPIDNXFAHLADP--GH 249
DPLG K +L+ KEIKNGRLAM ++ G + Q I T GPI+N + HLADP +
Sbjct: 80 DPLGLADDPEAKA-ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 138
Query: 248 ATIFAA-FTP 222
A +A F P
Sbjct: 139 AWAYATNFVP 148
WARNING: HSPs involving 241 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.91
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.342 0.151 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.161 0.662
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.355 0.158 0.586
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.354 0.159 0.675
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.341 0.149 0.519
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.349 0.155 0.549
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 159 152 10. 74 3 12 22 0.094 34
30 0.12 36
+2 0 159 152 10. 74 3 12 22 0.094 34
30 0.12 36
+1 0 160 153 10. 74 3 12 22 0.095 34
30 0.12 36
-1 0 160 155 10. 74 3 12 22 0.096 34
30 0.12 36
-2 0 159 152 10. 74 3 12 22 0.094 34
30 0.12 36
-3 0 159 152 10. 74 3 12 22 0.094 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 291
No. of states in DFA: 597 (59 KB)
Total size of DFA: 204 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 148.09u 0.97s 149.06t Elapsed: 00:00:46
Total cpu time: 148.13u 1.01s 149.14t Elapsed: 00:00:46
Start: Wed Oct 3 11:48:29 2001 End: Wed Oct 3 11:49:15 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000