R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 187 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7673359|gb|AAF66825.1| (AF190657) poly(A)-binding protein [Nicotiana
tabacum]
Length = 479
Frame 3 hits (HSPs): _____ _______________
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
Plus Strand HSPs:
Score = 506 (178.1 bits), Expect = 1.8e-47, P = 1.8e-47
Identities = 95/136 (69%), Positives = 107/136 (78%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKEERRA+L+AQFSQ+RPVA+ PS+APRMP+YPPGAPG+GQQ YGQGPPA
Sbjct: 210 KPLYVALAQRKEERRAKLRAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPA 269
Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANAN 377
M+PPQAGFGYQQQLVPGM PGG PMP+FF+P+VQQGQQGQRP GR T
Sbjct: 270 MIPPQAGFGYQQQLVPGMRPGGAPMPNFFMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPL 329
Query: 378 DAAADASKGTFYRYPP 425
+G YRYPP
Sbjct: 330 MQQQMLPRGRMYRYPP 345
Score = 166 (58.4 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 36/73 (49%), Positives = 41/73 (56%), Frame = +1
Query: 268 PCQASLFPWFSRANKGSAQWAARGTGPVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQDF 447
P P + +G RG GPVQQ QQPMP+MQQQMLPRG GRN +
Sbjct: 293 PMPNFFMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGRNGPEG 352
Query: 448 PLPICTGGMLSVP 486
P+P GGMLSVP
Sbjct: 353 PMPGVPGGMLSVP 365
Score = 61 (21.5 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15
Identities = 13/34 (38%), Positives = 19/34 (55%), Frame = +3
Query: 6 RFAGKPLYVALAQRKEERRARLQAQFSQMRPVAI 107
+F K YV AQ+K ER L+++F Q A+
Sbjct: 103 KFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAV 136
>gi|7673355|gb|AAF66823.1|AF190655_1 (AF190655) poly(A)-binding protein
[Nicotiana tabacum]
Length = 649
Frame 3 hits (HSPs): ___ ____________
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 649
0 150 300 450 600
Plus Strand HSPs:
Score = 495 (174.2 bits), Expect = 2.6e-46, P = 2.6e-46
Identities = 97/137 (70%), Positives = 105/137 (76%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKEERRARLQAQFSQMRP+A+ SVAPRMP+YPPG PGLGQQ YGQ PA
Sbjct: 377 KPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPA 436
Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANAN 377
M+PPQAGFGYQQQLVPGM PGGGPMP+FF+PMVQQGQQGQRP GR R +
Sbjct: 437 MLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGR-RGGAVPLQQGQQPV 495
Query: 378 DAAADAS--KGTFYRYPP 425
+G YRYPP
Sbjct: 496 PLMQQQMFPRGRGYRYPP 513
Score = 128 (45.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 29/74 (39%), Positives = 36/74 (48%), Frame = +1
Query: 268 PCQASLFPWFSRANKGSAQWAARGTG-PVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQD 444
P P + +G RG P+QQ QQP+P+MQQQM PRG GR + D
Sbjct: 460 PMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPD 519
Query: 445 FPLPICTGGMLSVP 486
P GGM S+P
Sbjct: 520 VAFPGVGGGMFSIP 533
Score = 51 (18.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 12/33 (36%), Positives = 17/33 (51%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPS 116
K +V AQ+K ER L+ +F Q A+ S
Sbjct: 274 KDWFVGRAQKKSEREMELKHRFEQSAKEAVDKS 306
>gi|7673357|gb|AAF66824.1|AF190656_1 (AF190656) poly(A)-binding protein
[Nicotiana tabacum]
Length = 330
Frame 3 hits (HSPs): ______________________
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 330
0 150 300
Plus Strand HSPs:
Score = 490 (172.5 bits), Expect = 8.9e-46, P = 8.9e-46
Identities = 96/137 (70%), Positives = 104/137 (75%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKEERRARLQAQFSQMRP+A+ SVAPRMP+YPPG PGLGQQ YGQ PA
Sbjct: 58 KPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPA 117
Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANAN 377
M+PPQAGFGYQQQLVPGM PGGGPMP+FF+PMVQQGQQGQRP G R +
Sbjct: 118 MLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRP-GSRRGGAVPLQQGQQPV 176
Query: 378 DAAADAS--KGTFYRYPP 425
+G YRYPP
Sbjct: 177 PLMQQQMFPRGRGYRYPP 194
Score = 129 (45.4 bits), Expect = 7.4e-07, P = 7.4e-07
Identities = 29/74 (39%), Positives = 37/74 (50%), Frame = +1
Query: 268 PCQASLFPWFSRANKGSAQWAARGTG-PVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQD 444
P P + +G + RG P+QQ QQP+P+MQQQM PRG GR + D
Sbjct: 141 PMPNFFMPMVQQGQQGQRPGSRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPD 200
Query: 445 FPLPICTGGMLSVP 486
P GGM S+P
Sbjct: 201 VAFPGVGGGMFSIP 214
>gi|1171978|sp|P42731|PAB2_ARATH POLYADENYLATE-BINDING PROTEIN 2 (POLY(A)
BINDING PROTEIN 2) (PABP 2) >gi|7439968|pir||T05425
polyadenylate-binding protein F28A23.130 - Arabidopsis thaliana
>gi|304109|gb|AAA61780.1| (L19418) poly(A)-binding protein
[Arabidopsis thaliana] >gi|2911051|emb|CAA17561.1| (AL021961)
poly(A)-binding protein [Arabidopsis thaliana]
>gi|7270360|emb|CAB80128.1| (AL161584) poly(A)-binding protein
[Arabidopsis thaliana]
Length = 629
Frame 3 hits (HSPs): ___ ____________
Frame 1 hits (HSPs): ___
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 629
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030A: Eukaryotic RNA-binding region 217..235
BLOCKS BL00030B: Eukaryotic RNA-binding region 255..264
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 31..115
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 117..204
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 206..291
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 313..392
DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 394..620
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 38..43
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 77..84
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 126..131
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 164..171
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 217..222
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 255..262
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 320..325
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 358..365
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 38..109
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 126..196
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 217..287
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 320..390
PFAM PABP: Poly-adenylate binding protein, un 540..611
PRODOM PD055999: PAB2_ARATH 1..37
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 39..75
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 78..121
PRODOM PD186424: 123..160
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 163..204
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 218..250
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 254..303
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 321..352
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 357..399
PRODOM PD066173: Q39953(2) 402..551
PRODOM PD002964: PABP(4) PAB1(2) 554..612
PROSITE RNP_1: Eukaryotic putative RNA-binding r 164..171
PROSITE RNP_1: Eukaryotic putative RNA-binding r 255..262
PROSITE RNP_1: Eukaryotic putative RNA-binding r 358..365
__________________
Plus Strand HSPs:
Score = 448 (157.7 bits), Expect = 2.5e-41, P = 2.5e-41
Identities = 86/135 (63%), Positives = 99/135 (73%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVA+AQRKE+RR RLQAQFSQ+RPVA+ PSV PRMP+YPPG PG+GQQ YGQ PPA
Sbjct: 386 KPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPA 445
Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANAN 377
M+PPQ G+GYQQQLVPGM PGGGP+PSFF+PMVQ QQ RP G R + N
Sbjct: 446 MIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQ--RPGGGRRPGGIQHSQQQNPM 503
Query: 378 DAAADASKGTFYRYP 422
+G +RYP
Sbjct: 504 MQQQMHPRGRMFRYP 518
Score = 72 (25.3 bits), Expect = 2.0, Sum P(2) = 0.87
Identities = 15/24 (62%), Positives = 16/24 (66%), Frame = +1
Query: 334 RGTGPVQQPQQPMPMMQQQMLPRG 405
R G +Q QQ PMMQQQM PRG
Sbjct: 489 RRPGGIQHSQQQNPMMQQQMHPRG 512
Score = 56 (19.7 bits), Expect = 2.0, Sum P(2) = 0.87
Identities = 11/28 (39%), Positives = 16/28 (57%), Frame = +3
Query: 6 RFAGKPLYVALAQRKEERRARLQAQFSQ 89
+F K YV AQ+K ER L+ ++ Q
Sbjct: 279 KFDDKEWYVGRAQKKSERETELRVRYEQ 306
>gi|7439964|pir||T00497 polyadenylate-binding protein T20D16.2 - Arabidopsis
thaliana >gi|2642429|gb|AAB87097.1| (AC002391) putative
poly(A)-binding protein [Arabidopsis thaliana]
Length = 662
Frame 3 hits (HSPs): ___ _________
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 662
0 150 300 450 600
Plus Strand HSPs:
Score = 364 (128.1 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 75/106 (70%), Positives = 82/106 (77%), Frame = +3
Query: 15 GKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPP 194
GKPLYVALAQRKEERRA+LQAQFSQMRP A P V PRMP++ GAPGLGQQ YGQGPP
Sbjct: 395 GKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPP 453
Query: 195 AMMPPQAGFGYQQQLVPGMXPGGGPMPSFFV-PMVQQGQQGQRPVGR 332
++P Q GFGYQ QLVPGM P +FF PM+Q GQQG RP GR
Sbjct: 454 PIIPHQPGFGYQPQLVPGMRP------AFFGGPMMQPGQQGPRPGGR 494
Score = 113 (39.8 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41
Identities = 31/71 (43%), Positives = 38/71 (53%), Frame = +1
Query: 289 PWFSRANKGSAQWAAR-GTGPVQ-QPQQPMPMMQQQMLPRGLSI-VTLLGRNMQDFPLPI 459
P +G R G GP++ Q QQPMP MQ QM+PRG GRNM D P+P
Sbjct: 480 PMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMP- 538
Query: 460 CTGGMLSVPXKLEV 501
GGM+ V + V
Sbjct: 539 --GGMVPVAYDMNV 550
Score = 53 (18.7 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 11/28 (39%), Positives = 15/28 (53%), Frame = +3
Query: 6 RFAGKPLYVALAQRKEERRARLQAQFSQ 89
+F K YV AQ+K ER L ++ Q
Sbjct: 289 KFDDKEWYVGKAQKKSERELELSRRYEQ 316
>gi|7528270|gb|AAF63202.1|AF240679_1 (AF240679) poly(A)-binding protein
[Cucumis sativus]
Length = 649
Frame 3 hits (HSPs): __ ___________
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 649
0 150 300 450 600
Plus Strand HSPs:
Score = 447 (157.4 bits), Expect = 4.1e-41, P = 4.1e-41
Identities = 89/136 (65%), Positives = 101/136 (74%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR-MPLYPPGAPGLGQQFLYGQGPP 194
KPLYVALAQRKE+R ARLQAQFSQM+P+A+ SVAPR MP+YPPG PG+GQQ YGQ PP
Sbjct: 379 KPLYVALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPP 438
Query: 195 AMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANA 374
++ Q GFGYQQQL+PGM PGGGPMP+FFVPMVQQGQQGQR GR R + T
Sbjct: 439 TIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGR-RAGAIQQTQQPVP 497
Query: 375 NDAAADASKGTFYRYPP 425
+G YRYPP
Sbjct: 498 LMQQQMLPRGRVYRYPP 514
Score = 144 (50.7 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 30/69 (43%), Positives = 39/69 (56%), Frame = +1
Query: 289 PWFSRANKGSAQWAARGTGPVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQDFPLPICTG 468
P + +G R G +QQ QQP+P+MQQQMLPRG GR + D P+P G
Sbjct: 470 PMVQQGQQGQRS-GGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAG 528
Query: 469 GMLSVPXKL 495
GM SVP ++
Sbjct: 529 GMFSVPYEM 537
Score = 61 (21.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 12/25 (48%), Positives = 16/25 (64%), Frame = +3
Query: 15 GKPLYVALAQRKEERRARLQAQFSQ 89
GK YV AQ+K ER L+++F Q
Sbjct: 275 GKEWYVGKAQKKSEREVELKSRFEQ 299
>gi|10120431|gb|AAG13056.1|AC011807_15 (AC011807) Putative Poly-A Binding
Protein [Arabidopsis thaliana]
Length = 671
Frame 3 hits (HSPs): ___ ____________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 671
0 150 300 450 600
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 3.3e-38, P = 3.3e-38
Identities = 88/154 (57%), Positives = 102/154 (66%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKE+R+ARLQAQFSQMRPV + P+V PRM +YPPG P +GQQ YGQGPPA
Sbjct: 395 KPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPA 454
Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVG---RPRNRSCATTPAA 368
M+P Q GFGYQQQLVPGM PGG PMP+FF+PM+QQGQQ Q+ RP P
Sbjct: 455 MIP-QPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQP 513
Query: 369 NANDAAADAS---KGTFYRYPPWPQHAR-FPTSNL 461
+G YRYP + PT N+
Sbjct: 514 QQPSPMMQQQMHPRGRMYRYPQRDVNTMPGPTQNM 548
Score = 100 (35.2 bits), Expect = 0.0015, Sum P(2) = 0.0015
Identities = 25/48 (52%), Positives = 29/48 (60%), Frame = +1
Query: 343 GPVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQDFPLPICTGGMLSVP 486
G + QPQQP PMMQQQM PRG + R++ P P T MLSVP
Sbjct: 508 GALPQPQQPSPMMQQQMHPRG-RMYRYPQRDVNTMPGP--TQNMLSVP 552
Score = 52 (18.3 bits), Expect = 0.0015, Sum P(2) = 0.0015
Identities = 11/27 (40%), Positives = 15/27 (55%), Frame = +3
Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQ 89
F K +V AQ+K ER L+ +F Q
Sbjct: 289 FDDKEWFVGKAQKKSERETELKQKFEQ 315
>gi|7439967|pir||T06979 polyadenylate-binding protein - wheat
>gi|1737492|gb|AAB38974.1| (U81318) poly(A)-binding protein
[Triticum aestivum]
Length = 651
Frame 3 hits (HSPs): _________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 651
0 150 300 450 600
Plus Strand HSPs:
Score = 386 (135.9 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
Identities = 73/105 (69%), Positives = 84/105 (80%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKE+R+ARLQAQFSQMRPV + +V PRM + PPG P +GQQ YGQ PPA
Sbjct: 382 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQ-PPA 439
Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGR 332
+ PQ GFG+QQ +PGM PGG PMP+F +PMVQQGQQ QRP GR
Sbjct: 440 FINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGR 484
Score = 59 (20.8 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
Identities = 19/46 (41%), Positives = 24/46 (52%), Frame = +1
Query: 361 QQPMPMMQQQMLPRG--LSIVTLLGRNMQDFPLPICTGGMLSVPXKL 495
QQ M M QQQML RG GR M D P GG+++ P ++
Sbjct: 492 QQSMQMGQQQMLGRGGGRGYRYQTGRGMPD-PAMHGVGGVMTSPYEM 537
>gi|480602|pir||S37085 polyadenylate-binding protein - fern (Anemia
phyllitidis) >gi|398327|emb|CAA81127.1| (Z26042) poly(A)-mRNA
binding protein [Anemia phyllitidis]
Length = 638
Frame 3 hits (HSPs): _________
Annotated Domains: _____________________ __________________________
__________________________________________________
Database sequence: | | | | | | 638
0 150 300 450 600
__________________
Annotated Domains:
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 21..105
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 107..193
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 195..279
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 302..380
DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 382..620
Entrez domain: ribonucleoprotein repeat homolog 27..94
Entrez domain: ribonucleoprotein repeat homolog 115..181
Entrez domain: ribonucleoprotein repeat homolog 205..271
Entrez domain: ribonucleoprotein repeat homolog 308..374
PROSITE RNP_1: Eukaryotic putative RNA-binding r 154..161
__________________
Plus Strand HSPs:
Score = 310 (109.1 bits), Expect = 6.9e-26, P = 6.9e-26
Identities = 64/108 (59%), Positives = 78/108 (72%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAIT-PSVAPRMP-LYPPGAPGLGQQFLYGQGP 191
KPLYVALAQRKEERRARLQAQF+QM+ VA P +AP P +Y PG G+G Q YGQ
Sbjct: 375 KPLYVALAQRKEERRARLQAQFAQMQIVAPNAPPMAPNPPSMYHPGPQGMGHQMFYGQPA 434
Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGR 332
P ++P QA GFGYQQ +VP M P +P++F+P+ + GQQ QRPV R
Sbjct: 435 PGLLPSQANGFGYQQPMVPTMRPTSAGVPNYFMPVQRPGQQIQRPVNR 482
>gi|5007080|gb|AAD37807.1| (AF153689) poly(A)-binding protein [Oryza sativa]
Length = 183
Frame 3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 260 (91.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 47/65 (72%), Positives = 55/65 (84%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVALAQRKE+R+ARLQAQFSQ+RPV + PSV PRMP++PPG PG+GQQ YGQ PPA
Sbjct: 117 KPLYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPA 176
Query: 198 MMPPQ 212
+ Q
Sbjct: 177 FINTQ 181
>gi|1171979|sp|Q05196|PAB5_ARATH POLYADENYLATE-BINDING PROTEIN 5 (POLY(A)
BINDING PROTEIN 5) (PABP 5) >gi|166786|gb|AAA32832.1| (M97657)
poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Frame 3 hits (HSPs): _________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 668
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030B: Eukaryotic RNA-binding region 172..181
BLOCKS BL00030A: Eukaryotic RNA-binding region 330..348
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 40..123
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 125..213
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 215..300
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 323..401
DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 403..655
Entrez Domain: POLY-ALA. 13..16
Entrez Domain: POLY-ALA. 27..38
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 47..52
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 85..92
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 134..139
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 172..179
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 227..232
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 265..272
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 330..335
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 368..375
Entrez Domain: POLY-GLN. 514..521
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 47..117
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 134..204
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 227..297
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 330..400
PFAM PABP: Poly-adenylate binding protein, un 575..646
PRODOM PD186691: 40..83
PRODOM PD060589: PABP(4) PAB1(2) 85..129
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 135..169
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 171..218
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 228..258
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 264..312
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 331..361
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 366..412
PRODOM PD066173: Q39953(2) 414..510
PRODOM PD029581: PAB5_ARATH 512..591
PRODOM PD002964: PABP(4) PAB1(2) 593..647
PROSITE RNP_1: Eukaryotic putative RNA-binding r 172..179
PROSITE RNP_1: Eukaryotic putative RNA-binding r 368..375
__________________
Plus Strand HSPs:
Score = 212 (74.6 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 52/110 (47%), Positives = 68/110 (61%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMR-PVAITPSVAPRMPLY--PPGAPGLGQQ--FLYG 182
KPLYVALAQRKEER+A LQ+ F+Q+R P ++P +P + PPG P G G
Sbjct: 396 KPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIG 455
Query: 183 QGPPAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQRPVG 329
++P Q G+GYQ Q +PGM PG GP P+F +P + +Q Q G R VG
Sbjct: 456 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPR-VG 505
>gi|7239504|gb|AAF43230.1|AC012654_14 (AC012654) Identical to the
polyadenylate-binding protein 5 (PAB5) from Arabidopsis thaliana
gb|M97657
Length = 668
Frame 3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 668
0 150 300 450 600
Plus Strand HSPs:
Score = 212 (74.6 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 52/110 (47%), Positives = 68/110 (61%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMR-PVAITPSVAPRMPLY--PPGAPGLGQQ--FLYG 182
KPLYVALAQRKEER+A LQ+ F+Q+R P ++P +P + PPG P G G
Sbjct: 396 KPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIG 455
Query: 183 QGPPAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQRPVG 329
++P Q G+GYQ Q +PGM PG GP P+F +P + +Q Q G R VG
Sbjct: 456 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPR-VG 505
>gi|12643628|sp|O64380|PAB3_ARATH POLYADENYLATE-BINDING PROTEIN 3 (POLY(A)
BINDING PROTEIN 3) (PABP 3) >gi|2505869|emb|CAA72907.1| (Y12227)
polyA binding protein PAB3 [Arabidopsis thaliana]
Length = 660
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 660
0 150 300 450 600
Plus Strand HSPs:
Score = 205 (72.2 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 53/101 (52%), Positives = 66/101 (65%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191
KPLY+ALAQRKE+RRA LQA FSQ+R A P +PPG P G Q +Y GQ
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR--APGPMSGFH---HPPGGPMPGPPQHMYVGQNG 454
Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQR 320
+M+P Q G+G+Q Q +PGM PG GP +F VP + +Q Q G R
Sbjct: 455 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPR 499
Score = 180 (63.4 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 52/115 (45%), Positives = 63/115 (54%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191
KPLY+ALAQRKE+RRA LQA FSQ+R P +PPG P G Q +Y GQ
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR----APGPMSGFH-HPPGGPMPGPPQHMYVGQNG 454
Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTP 362
+M+P Q G+G+Q Q +PGM PG GP +F VP P R T P
Sbjct: 455 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPY-------------PLQRQPQTGP 498
>gi|9930616|gb|AAG02117.1|AF293840_1 (AF293840) poly(A) binding protein
[Arabidopsis thaliana]
Length = 660
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 660
0 150 300 450 600
Plus Strand HSPs:
Score = 205 (72.2 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 53/101 (52%), Positives = 66/101 (65%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191
KPLY+ALAQRKE+RRA LQA FSQ+R A P +PPG P G Q +Y GQ
Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR--APGPMSGFH---HPPGGPMPGPPQHMYVGQNG 454
Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQR 320
+M+P Q G+G+Q Q +PGM PG GP +F VP + +Q Q G R
Sbjct: 455 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYSLQRQPQTGPR 499
>gi|7439965|pir||T00768 polyadenylate-binding protein T22J18.7 - Arabidopsis
thaliana >gi|3287682|gb|AAC25510.1|AAC25510 (AC003979) Strong
similarity to gb|M97657 poly(A)-binding protein (PABP5) from A.
thaliana. [Arabidopsis thaliana]
Length = 655
Frame 3 hits (HSPs): ___ ________
__________________________________________________
Database sequence: | | | | | | 655
0 150 300 450 600
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 47/101 (46%), Positives = 60/101 (59%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191
KPLY+ALAQRKE+RRA LQ + P +PPG P G Q +Y GQ
Sbjct: 400 KPLYIALAQRKEDRRAHLQIR---------APGPMSGFH-HPPGGPMPGPPQHMYVGQNG 449
Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQR 320
+M+P Q G+G+Q Q +PGM PG GP +F VP + +Q Q G R
Sbjct: 450 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPR 494
Score = 99 (34.8 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 30/75 (40%), Positives = 38/75 (50%), Frame = +3
Query: 138 YPPGAPGLGQ-QFLY-GQGPPAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQ 308
+PPG P G Q +Y GQ +M+P Q G+G+Q Q +PGM PG GP +F VP
Sbjct: 430 HPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPY----- 483
Query: 309 QGQRPVGRPRNRSCATTP 362
P R T P
Sbjct: 484 --------PLQRQPQTGP 493
Score = 57 (20.1 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 12/24 (50%), Positives = 15/24 (62%), Frame = +3
Query: 24 LYVALAQRKEERRARLQAQFSQMR 95
LYV AQ+K ER L+ +F Q R
Sbjct: 299 LYVGRAQKKSEREEELRRKFEQER 322
>gi|1616770|gb|AAB16848.1| (U70731) putative poly(A)-binding protein FabM
[Aspergillus nidulans]
Length = 705
Frame 3 hits (HSPs): ________
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 705
0 150 300 450 600
Plus Strand HSPs:
Score = 124 (43.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 42/105 (40%), Positives = 51/105 (48%), Frame = +3
Query: 15 GKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAP----RMPLYPPGAPGLGQQ-FLY 179
GKPLYVALAQRK+ RR++L+A + + A + + P G GQQ F+
Sbjct: 444 GKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIP 503
Query: 180 GQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVG 329
G M PPQ G PG PG P P GQQG R VG
Sbjct: 504 GAQRGGMFPPQPGMMMGMPGRPGQYPG--PFP---------GQQGGRGVG 542
Score = 50 (17.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 16/42 (38%), Positives = 21/42 (50%), Frame = +1
Query: 322 QWAARGTGPVQQ--PQ-QPMPM--MQQQMLPRGLSIVTLLGR 432
Q RG GP QQ P Q +PM MQ +P G+ + G+
Sbjct: 535 QQGGRGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQ 576
>gi|3123239|sp|P31209|PABP_SCHPO POLYADENYLATE-BINDING PROTEIN (POLY(A) BINDING
PROTEIN) (PABP) >gi|7492311|pir||T38950 polyadenylate-binding
protein - fission yeast (Schizosaccharomyces pombe)
>gi|2104439|emb|CAB08762.1| (Z95396) polyadenylate-binding protein
[Schizosaccharomyces pombe]
Length = 653
Frame 3 hits (HSPs): ____ ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 653
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030A: Eukaryotic RNA-binding region 82..100
BLOCKS BL00030B: Eukaryotic RNA-binding region 208..217
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 82..87
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 121..128
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 170..175
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 208..215
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 263..268
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 301..308
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 366..371
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 404..411
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 82..153
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 170..240
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 263..333
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 366..436
PFAM PABP: Poly-adenylate binding protein, un 570..641
PRODOM PD059909: PABP_SCHPO 1..81
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 83..119
PRODOM PD060589: PABP(4) PAB1(2) 121..165
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 171..201
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 208..249
PRODOM PD186873: PABP(2) O96606(1) Q92227(1) 257..298
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 301..349
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 367..397
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 403..448
PRODOM PD066162: PABP_SCHPO 450..583
PRODOM PD002964: PABP(4) PAB1(2) 585..641
PROSITE RNP_1: Eukaryotic putative RNA-binding r 208..215
PROSITE RNP_1: Eukaryotic putative RNA-binding r 301..308
PROSITE RNP_1: Eukaryotic putative RNA-binding r 404..411
__________________
Plus Strand HSPs:
Score = 142 (50.0 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 52/132 (39%), Positives = 65/132 (49%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR--MPLYPPGAPGLGQQFLYGQ 185
AGKPLYVALAQRKE RR++L+AQ + VA +P GA G +YG
Sbjct: 430 AGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATG---PLIYGP 486
Query: 186 G----PPAM----MPPQAGFGYQQQLVPGM---XPGGGPMPSFFVPMVQQGQQGQRPV-- 326
G P A+ MP G + PGM P GGP P + P G + PV
Sbjct: 487 GGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGY--P----GMNARGPVPA 540
Query: 327 -GRPRNRSCATTPAANANDAAA 389
GRP + P+A +A A
Sbjct: 541 QGRPMMMP-GSVPSAGPAEAEA 561
Score = 70 (24.6 bits), Expect = 0.29, Sum P(2) = 0.26
Identities = 13/29 (44%), Positives = 19/29 (65%), Frame = +3
Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQMR 95
+ GK LYV AQ+K ER L+ ++ QM+
Sbjct: 326 YKGKKLYVGRAQKKHEREEELRKRYEQMK 354
Score = 67 (23.6 bits), Expect = 0.29, Sum P(2) = 0.26
Identities = 19/58 (32%), Positives = 27/58 (46%), Frame = +3
Query: 123 PRMPL-YPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMV 296
P MP +P G P G + +GP +P Q + ++PG P GP + VP V
Sbjct: 514 PGMPTQFPAGGPAPGYPGMNARGP---VPAQG----RPMMMPGSVPSAGPAEAEAVPAV 565
>gi|538583|pir||DNZPPA polyadenylate-binding protein - fission yeast
(Schizosaccharomyces pombe) (fragment) >gi|173421|gb|AAA35320.1|
(M64603) poly(A)-binding protein [Schizosaccharomyces pombe]
Length = 628
Frame 3 hits (HSPs): ___ ___________
Annotated Domains: __ ______ ______ ______ _______
__________________________________________________
Database sequence: | | | | | | 628
0 150 300 450 600
__________________
Annotated Domains:
Entrez domain: ribonucleoprotein repeat homolog 67..134
Entrez region: RNA-binding RNP2 motif 68..73
Entrez region: RNA-binding RNP1 motif 107..114
Entrez domain: ribonucleoprotein repeat homolog 155..221
Entrez region: RNA-binding RNP2 motif 156..161
Entrez region: RNA-binding RNP1 motif 194..201
Entrez domain: ribonucleoprotein repeat homolog 248..314
Entrez region: RNA-binding RNP2 motif 249..254
Entrez region: RNA-binding RNP1 motif 287..294
Entrez domain: ribonucleoprotein repeat homolog 351..417
Entrez region: RNA-binding RNP2 motif 352..357
Entrez region: RNA-binding RNP1 motif 390..397
PROSITE G_BETA_REPEATS: Beta-transducin family T 8..22
PROSITE RNP_1: Eukaryotic putative RNA-binding r 194..201
PROSITE RNP_1: Eukaryotic putative RNA-binding r 287..294
PROSITE RNP_1: Eukaryotic putative RNA-binding r 390..397
__________________
Plus Strand HSPs:
Score = 132 (46.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 50/132 (37%), Positives = 63/132 (47%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR--MPLYPPGAPGLGQQFLYGQ 185
AGKPLYVALAQRKE RR++L+AQ + VA +P GA G +YG
Sbjct: 416 AGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATG---PLIYGP 472
Query: 186 GPPAMMPPQAGFGYQQQLVPG------MXPGGGPMPSFF-VPMVQQGQQGQRPV---GRP 335
G + P A G +VPG M PG P+ S V G + PV GRP
Sbjct: 473 GGYPI--PAAVNGRGMPMVPGHNGPMPMYPGMPPLSSLLEVRPGYPGMNARGPVPAQGRP 530
Query: 336 RNRSCATTPAANANDAAA 389
+ P+A +A A
Sbjct: 531 MMMP-GSVPSAGPAEAEA 547
Score = 68 (23.9 bits), Expect = 0.46, Sum P(2) = 0.37
Identities = 13/29 (44%), Positives = 18/29 (62%), Frame = +3
Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQMR 95
+ GK LYV AQ+K ER L+ + QM+
Sbjct: 312 YKGKKLYVGRAQKKHEREEELRKAYEQMK 340
Score = 67 (23.6 bits), Expect = 0.46, Sum P(2) = 0.37
Identities = 22/68 (32%), Positives = 29/68 (42%), Frame = +3
Query: 93 RPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMP--PQAGFGYQQQLVPGMXPGGG 266
R + + P MP+YP G P L G P M P G + ++PG P G
Sbjct: 484 RGMPMVPGHNGPMPMYP-GMPPLSSLLEVRPGYPGMNARGPVPAQG-RPMMMPGSVPSAG 541
Query: 267 PMPSFFVPMV 296
P + VP V
Sbjct: 542 PAEAEAVPAV 551
>gi|7439963|pir||T07933 polyadenylate-binding protein RB47 precursor,
chloroplast - Chlamydomonas reinhardtii >gi|2935338|gb|AAC39368.1|
(AF043297) poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Frame 3 hits (HSPs): __ ___ _____________
__________________________________________________
Database sequence: | | | | | | 623
0 150 300 450 600
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 51/141 (36%), Positives = 68/141 (48%), Frame = +3
Query: 15 GKPLYVALAQRKEERRA-----RLQAQF---SQMRPVAITPSVAP---RMPLYPPGAPGL 161
GKPLYVALAQRK+ RRA +QA+ + RP ++P MP + PG G+
Sbjct: 375 GKPLYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGGM 434
Query: 162 GQ-QFLYGQGPPAMMPPQA----GFGYQQQLVPGMXPGGGPMPSFFVPMVQ-QGQQGQRP 323
G P MMPP+ G G + ++P GG PM PM +G+ G+ P
Sbjct: 435 AAGPRAPGMMYPPMMPPRGMPGPGRGPRGPMMPPQMMGG-PMMG--PPMGPGRGRGGRGP 491
Query: 324 VGRPRNRSCATTPAANANDAAADAS 398
GR + R PA AA A+
Sbjct: 492 SGRGQGRG-NNAPAQQPKPAAEPAA 515
Score = 87 (30.6 bits), Expect = 0.044, Sum P(2) = 0.043
Identities = 36/98 (36%), Positives = 42/98 (42%), Frame = +3
Query: 114 SVAPRMP--LYPPGAPGLGQQFLYGQGPPA-MMPPQAGFGYQQQLVPGMXPG---GGPMP 275
+ PR P +YPP P G G+GP MMPPQ G + P M PG GG P
Sbjct: 435 AAGPRAPGMMYPPMMPPRGMPGP-GRGPRGPMMPPQMMGG--PMMGPPMGPGRGRGGRGP 491
Query: 276 SFFVPMVQQGQQGQ--RPVGRPRNRSCATTPAANANDAAAD 392
S Q +P P A PAA A AAA+
Sbjct: 492 SGRGQGRGNNAPAQQPKPAAEPAAAPAAAAPAAAAPAAAAE 532
Score = 54 (19.0 bits), Expect = 0.044, Sum P(2) = 0.043
Identities = 11/28 (39%), Positives = 17/28 (60%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMR 95
+GK LY AQ+K ER A L+ + + +
Sbjct: 269 SGKTLYAGRAQKKTEREAMLRQKAEESK 296
Score = 40 (14.1 bits), Expect = 1.1, Sum P(2) = 0.68
Identities = 10/22 (45%), Positives = 15/22 (68%), Frame = +3
Query: 6 RFAGKPLYVALAQRKEER-RAR 68
+ GK +YVA Q++ +R RAR
Sbjct: 178 KIEGKIVYVAPFQKRADRPRAR 199
>gi|7509318|pir||T26427 hypothetical protein Y106G6H.2 - Caenorhabditis elegans
>gi|3880681|emb|CAA21572.1| (AL032631) predicted using
Genefinder~contains similarity to Pfam domain: PF00076 (RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)), Score=334.3,
E-value=4.3e-97, N=4; PF00658 (Poly-adenylate binding protein,
unique domain.), Score=104.3, E-val>
Length = 646
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 646
0 150 300 450 600
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 52/148 (35%), Positives = 67/148 (45%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVA+AQRKE+RRA+L +Q+ Q P +Y P PG G Y P
Sbjct: 385 KPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGY---YVANP-- 439
Query: 198 MMPPQAGFGYQQQLVPGMXPGG--GPMPSFFVP---MVQQGQQG-QRPVGRPRNRSCATT 359
M Q F QQ+V PGG G + V M+ QG Q +GRP+N+
Sbjct: 440 -MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGGPR 495
Query: 360 -PAANANDAAADASKGTFYRYPPWPQHARFPTSNL 461
P N A G + PP Q+ N+
Sbjct: 496 GPPQQYNQVAQG---GVRMQGPPRTQNPGVQQQNV 527
>gi|4335716|gb|AAD17394.1| (AC006248) putative poly(A)-binding protein
[Arabidopsis thaliana]
Length = 132
Frame 3 hits (HSPs): _____________ ___________
__________________________________________________
Database sequence: | | | | 132
0 50 100
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 16/28 (57%), Positives = 21/28 (75%), Frame = +3
Query: 99 VAITPSVAPRMPLYPPGAPGLGQQFLYG 182
VA+ PSV PRMP+YP G+PG+ + YG
Sbjct: 105 VAMPPSVGPRMPIYPLGSPGIRKSMFYG 132
Score = 42 (14.8 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 11/33 (33%), Positives = 17/33 (51%), Frame = +3
Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQ-MRPVA 104
F K V AQ+K ER L+ + Q ++ +A
Sbjct: 38 FDDKQWVVDRAQKKSEREMELKVPYEQSLKEIA 70
>gi|780291|gb|AAA65224.1| (U24123) polyadenylate-binding protein
[Caenorhabditis elegans]
Length = 646
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 646
0 150 300 450 600
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 9.9e-06, P = 9.9e-06
Identities = 51/148 (34%), Positives = 66/148 (44%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197
KPLYVA+ QRKE+RRA+L +Q+ Q P +Y P PG G Y P
Sbjct: 385 KPLYVAIGQRKEDRRAQLASQYMQRVASMRMHGNVPGAAMYNPTQPGPGY---YVANP-- 439
Query: 198 MMPPQAGFGYQQQLVPGMXPGG--GPMPSFFVP---MVQQGQQG-QRPVGRPRNRSCATT 359
M Q F QQ+V PGG G + V M+ QG Q +GRP+N+
Sbjct: 440 -MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGGPR 495
Query: 360 -PAANANDAAADASKGTFYRYPPWPQHARFPTSNL 461
P N A G + PP Q+ N+
Sbjct: 496 GPPQQYNQVAQG---GVRMQGPPRTQNPGVQQQNV 527
>gi|12655478|emb|CAC27591.1| (AJ406952) keratin associated protein 16.1 [Homo
sapiens]
Length = 105
Frame -1 hits (HSPs): ______________________________
Frame -3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 105
0 20 40 60 80 100
Minus Strand HSPs:
Score = 77 (27.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 20/57 (35%), Positives = 21/57 (36%), Frame = -1
Query: 238 SCCW*PNPACGGIMAGGPCPYKNCCPRP-GAPGG*RGIRGATEGVIATGLICENCAC 71
SCC CGG GG C +CC G GG G G G G C C
Sbjct: 34 SCCGCGGSGCGGSGCGGSCCGSSCCGSGCGGCGGCGGCGGGCCGSSCCGSSCCGSGC 90
Score = 64 (22.5 bits), Expect = 0.18, Sum P(2) = 0.16
Identities = 20/53 (37%), Positives = 22/53 (41%), Frame = -1
Query: 322 GRC-PCWPC*TMGTKKLGMGPPPGXIPGTSCCW*PNPACGGIMA-GGPCPYKNCC 164
G C C C G G G G G+SCC CGG GG C +CC
Sbjct: 30 GCCGSCCGCGGSGCGGSGCG---GSCCGSSCCGSGCGGCGGCGGCGGGCCGSSCC 81
Score = 48 (16.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 8/13 (61%), Positives = 8/13 (61%), Frame = -3
Query: 389 CCCIIGIGCWGCC 351
CCC GC GCC
Sbjct: 22 CCC--QPGCCGCC 32
>gi|64970|emb|CAA40721.1| (X57483) polyA binding protein [Xenopus laevis]
Length = 633
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 633
0 150 300 450 600
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 50/144 (34%), Positives = 60/144 (41%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAI-TPSVAPRMPLYPPGA-------PGLG 164
A KPLYVALAQRKEER+A L Q+ Q M V + P + P P PP + P
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQN 416
Query: 165 QQFLYGQGPPAMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326
+ Y G A + P Q + Q +PG P P F M Q R +
Sbjct: 417 RAAYYPPGQIAQLSPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVM 476
Query: 327 GRPR--NRSCATTPAANANDAAADAS 398
R N S T AAA AS
Sbjct: 477 SAQRVANTSTQTMGPRPTTAAAAAAS 502
>gi|7484631|pir||T12420 polyadenylate-binding protein - common ice plant
(fragment) >gi|2213871|gb|AAB61594.1| (AF003126) poly(A)-binding
protein [Mesembryanthemum crystallinum]
Length = 176
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 176
0 50 100 150
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 27/47 (57%), Positives = 31/47 (65%), Frame = +1
Query: 337 GTGPVQQPQQ-PMPMMQQQMLPRGLSIVTLLGRNMQDFPLPICTGGML 477
G PVQQ QQ P+PMMQQQM+PRG R + D PLP TGG+L
Sbjct: 7 GGAPVQQSQQQPIPMMQQQMMPRGRYRYPP-ARGLPDAPLPGVTGGVL 53
>gi|1352709|sp|P20965|PABP_XENLA POLYADENYLATE-BINDING PROTEIN (POLY(A) BINDING
PROTEIN) (PABP) >gi|538582|pir||DNXLPA polyadenylate-binding
protein - African clawed frog >gi|623598|gb|AAA60936.1| (M27072)
poly(A)-binding protein [Xenopus laevis]
Length = 633
Frame 3 hits (HSPs): ____________
Annotated Domains: ______________________ ___________________________
__________________________________________________
Database sequence: | | | | | | 633
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030A: Eukaryotic RNA-binding region 13..31
BLOCKS BL00030B: Eukaryotic RNA-binding region 333..342
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 13..18
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 52..59
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 101..106
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 138..145
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 193..198
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 231..238
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 296..301
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 333..340
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 13..84
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 101..170
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 193..263
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 296..365
PFAM PABP: Poly-adenylate binding protein, un 541..612
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 14..50
PRODOM PD060589: PABP(4) PAB1(2) 52..96
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 102..132
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 137..186
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 194..228
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 230..278
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 297..330
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 332..381
PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 383..456
PRODOM PD012528: PAB1(2) PABP(1) Q62029(1) 458..525
PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 527..553
PRODOM PD002964: PABP(4) PAB1(2) 555..622
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 253..260
PROSITE RNP_1: Eukaryotic putative RNA-binding r 138..145
PROSITE RNP_1: Eukaryotic putative RNA-binding r 231..238
PROSITE RNP_1: Eukaryotic putative RNA-binding r 333..340
__________________
Plus Strand HSPs:
Score = 118 (41.5 bits), Expect = 0.00010, P = 0.00010
Identities = 50/144 (34%), Positives = 60/144 (41%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAI-TPSVAPRMPLYPPGA-------PGLG 164
A KPLYVALAQRKEER+A L Q+ Q M V + P + P P PP + P
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQN 416
Query: 165 QQFLYGQGPPAMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326
+ Y G A + P Q + Q +PG P P F M Q R +
Sbjct: 417 RAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVM 476
Query: 327 GRPR--NRSCATTPAANANDAAADAS 398
R N S T AAA AS
Sbjct: 477 SAQRVANTSTQTMGPRPTTAAAAAAS 502
>gi|172092|gb|AAA34838.1| (M12780) polyadenylate-binding protein [Saccharomyces
cerevisiae]
Length = 577
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 577
0 150 300 450
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.00063, P = 0.00063
Identities = 41/110 (37%), Positives = 53/110 (48%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGP 191
AGKPLYVA+AQRK+ RR++L Q + + A R G PG QF+ P
Sbjct: 388 AGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAARAAA-AAGMPG---QFM----P 439
Query: 192 P---AMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQ-QGQRPVGR-PRN 341
P +MPP+ G + M P GG + P + G G P G PRN
Sbjct: 440 PMFYGVMPPR-GVPFNGPNPQQMNPMGGMPKNGMPPQFRNGPVYGVPPQGGFPRN 493
>gi|4504715 ref|NP_003810.1| poly(A)-binding protein, cytoplasmic 4 (inducible
form); inducible poly(A)-binding protein [Homo sapiens]
>gi|11427851 ref|XP_002105.1| poly(A)-binding protein, cytoplasmic
4 (inducible form) [Homo sapiens] >gi|12229875|sp|Q13310|PAB4_HUMAN
POLYADENYLATE-BINDING PROTEIN 4 (POLY(A) BINDING PROTEIN 4) (PABP
4) (INDUCIBLE POLY(A)-BINDING PROTEIN) (IPABP) (ACTIVATED-PLATELET
PROTEIN-1) (APP-1) >gi|1163177|gb|AAC50350.1| (U33818) inducible
poly(A)-binding protein [Homo sapiens] >gi|2801403|gb|AAB97309.1|
(U75686) polyadenylate binding protein [Homo sapiens]
>gi|1585757|prf||2201474A inducible poly(A)-binding protein [Homo
sapiens]
Length = 644
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 644
0 150 300 450 600
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 0.0010, P = 0.0010
Identities = 49/134 (36%), Positives = 62/134 (46%), Frame = +3
Query: 6 RFAG-KPLYVALAQRKEERRARLQAQFSQ-MRPVAITPSVAPRMPLYPPGAPGLGQQFL- 176
R G KPLYVALAQRKEER+A L Q+ Q + + P+ A + + P A G +
Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI-LNQFQPAAGGYFVPAVP 414
Query: 177 YGQG-PPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGR---PRNR 344
QG PP P Q Q + P GG P +P + Q G RP R P
Sbjct: 415 QAQGRPPYYTPNQLA---QMRPNPRWQQGGRPQGFQGMPSAIR-QSGPRPTLRHLAPTGS 470
Query: 345 SCATTPAANANDAAADASKG 404
C A + A A A +G
Sbjct: 471 ECPDRLAMDFGGAGA-AQQG 489
>gi|206716|gb|AAA42066.1| (M64791) salivary proline-rich protein [Rattus
norvegicus]
Length = 202
Frame 3 hits (HSPs): _____________________
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | || 202
0 50 100 150 200
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.0012, Sum P(2) = 0.0012
Identities = 32/90 (35%), Positives = 41/90 (45%), Frame = +3
Query: 75 AQFSQMRPVAITPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGM 251
AQ +++ + TP+ P P +PP P G QQ QG P PPQ G + Q G
Sbjct: 16 AQEPELQSLDQTPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GP 69
Query: 252 XPGGGPMPSFFVPMVQQGQQGQRPVGRPRNR 344
P GGP P QQG P G P+ +
Sbjct: 70 TPPGGPQQK---PPQPGNQQGPPPPGGPQQK 97
Score = 39 (13.7 bits), Expect = 0.0012, Sum P(2) = 0.0012
Identities = 10/21 (47%), Positives = 12/21 (57%), Frame = +1
Query: 343 GPVQQPQQPMPMMQQQMLPRG 405
GP Q+P QP QQ P+G
Sbjct: 169 GPQQRPPQPG---NQQSPPQG 186
>gi|4508017 ref|NP_003448.1| zinc finger protein 207 [Homo sapiens]
>gi|11426532 ref|XP_008462.1| zinc finger protein 207 [Homo
sapiens] >gi|6137311|sp|O43670|Z207_HUMAN ZINC FINGER PROTEIN 207
>gi|2895870|gb|AAC78561.1| (AF046001) zinc finger transcription
factor [Homo sapiens]
Length = 478
Frame 3 hits (HSPs): __________ ___________
__________________________________________________
Database sequence: | | | | | 478
0 150 300 450
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.0015, P = 0.0015
Identities = 41/97 (42%), Positives = 50/97 (51%), Frame = +3
Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218
EERRA+L + Q + RP I P V P + PP PG+ QQ G PP MPP
Sbjct: 373 EERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPP-QPGIPQQ--QGMRPP--MPPHGQ 427
Query: 219 FGYQQQLVPGMXPGGGPMPSFFVPMVQ--QGQQGQRPVG-RP 335
+G Q +PG PG P PMV QG + P+G RP
Sbjct: 428 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRP 469
Score = 98 (34.5 bits), Expect = 0.096, P = 0.091
Identities = 33/87 (37%), Positives = 42/87 (48%), Frame = +3
Query: 105 ITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPG-GGPMPSF 281
+ P V P MP PP PG+ + G MMPP G L+PGM PG P+P
Sbjct: 163 LMPGVPPLMPGMPPVMPGMPPGMMPMGG---MMPPGPGI---PPLMPGMPPGMPPPVPRP 216
Query: 282 FVPMVQQGQQGQRP--VGRPRNRSCATTPA 365
+P + Q Q P + RP + AT PA
Sbjct: 217 GIPPMTQAQAVSAPGILNRPPAPT-ATVPA 245
>gi|6321013 ref|NP_011092.1| Poly(A) binding protein, cytoplasmic and nuclear;
Pab1p [Saccharomyces cerevisiae] >gi|417441|sp|P04147|PABP_YEAST
POLYADENYLATE-BINDING PROTEIN, CYTOPLASMIC AND NUCLEAR (PABP) (ARS
CONSENSUS BINDING PROTEIN ACBP-67) (POLYADENYLATE TAIL-BINDING
PROTEIN) >gi|1070599|pir||DNBYPA polyadenylate-binding protein -
yeast (Saccharomyces cerevisiae) >gi|171967|gb|AAA34787.1| (M13371)
poly (A)-binding protein [Saccharomyces cerevisiae]
>gi|218386|dbj|BAA00017.1| (D00023) polyadenylate-binding protein
[Saccharomyces cerevisiae] >gi|603406|gb|AAB64692.1| (U18922)
Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 577
0 150 300 450
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.0020, P = 0.0020
Identities = 44/110 (40%), Positives = 56/110 (50%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQF---SQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYG 182
AGKPLYVA+AQRK+ RR++L Q +QMR T + A G PG QF+
Sbjct: 388 AGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAA----GMPG---QFM-- 438
Query: 183 QGPP---AMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQ-QGQRPVGR-PRN 341
PP +MPP+ G + M P GG + P + G G P G PRN
Sbjct: 439 --PPMFYGVMPPR-GVPFNGPNPQQMNPMGGMPKNGMPPQFRNGPVYGVPPQGGFPRN 493
>gi|7499382|pir||T21096 hypothetical protein F18H3.3b - Caenorhabditis elegans
>gi|3876087|emb|CAA90446.1| (Z50110) contains similarity to Pfam
domain: PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)), Score=332.7, E-value=1.4e-96, N=4~cDNA EST EMBL:Z14771
comes from this gene~cDNA EST yk42f11.5 comes from this gene~cDNA
EST yk42f11.3 comes>
Length = 566
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 566
0 150 300 450
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.0027, P = 0.0027
Identities = 47/123 (38%), Positives = 57/123 (46%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMP----LYPPGAPG-LGQQFLYG 182
KPLYVALAQRKE+RRA+L +Q+ Q A +P LY PG G +
Sbjct: 411 KPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNA 470
Query: 183 QGPPAMMPPQAGFGYQQQLVPGMXPGGGPM----PSFFVPMVQQGQQGQRPV----GRPR 338
QG P P A Q + PG M P F V QQG+ P+ GRP+
Sbjct: 471 QGRPGFQPQSA----QIRGPPGQRVFQNQMFMQYP-FNQRQVYPQQQGRPPMRTNDGRPQ 525
Query: 339 NRSCATTPA 365
A PA
Sbjct: 526 Y-GMAPRPA 533
>gi|7499381|pir||T21095 hypothetical protein F18H3.3a - Caenorhabditis elegans
>gi|3876085|emb|CAA90444.1| (Z50110) contains similarity to Pfam
domain: PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)), Score=332.7, E-value=1.4e-96, N=4; PF00658
(Poly-adenylate binding protein, unique domain.), Score=108.5,
E-value=4.2e-29, N=1~cDNA EST yk11>
Length = 692
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 692
0 150 300 450 600
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.0035, P = 0.0035
Identities = 47/123 (38%), Positives = 57/123 (46%), Frame = +3
Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMP----LYPPGAPG-LGQQFLYG 182
KPLYVALAQRKE+RRA+L +Q+ Q A +P LY PG G +
Sbjct: 411 KPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNA 470
Query: 183 QGPPAMMPPQAGFGYQQQLVPGMXPGGGPM----PSFFVPMVQQGQQGQRPV----GRPR 338
QG P P A Q + PG M P F V QQG+ P+ GRP+
Sbjct: 471 QGRPGFQPQSA----QIRGPPGQRVFQNQMFMQYP-FNQRQVYPQQQGRPPMRTNDGRPQ 525
Query: 339 NRSCATTPA 365
A PA
Sbjct: 526 Y-GMAPRPA 533
>gi|6756051 ref|NP_035881.1| zinc finger protein 207 [Mus musculus]
>gi|7513880|pir||JE0367 zinc finger protein - mouse
>gi|4153886|dbj|BAA37094.1| (AB013357) 49 kDa zinc finger protein
[Mus musculus]
Length = 460
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0055, P = 0.0055
Identities = 41/97 (42%), Positives = 49/97 (50%), Frame = +3
Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218
EERRA+L + Q + RP I P V P + PP PGL QQ PP MPP
Sbjct: 355 EERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPP-QPGLPQQ--QAMRPP--MPPHGQ 409
Query: 219 FGYQQQLVPGMXPGGGPMPSFFVPMVQ--QGQQGQRPVG-RP 335
+G Q +PG PG P PMV QG + P+G RP
Sbjct: 410 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRP 451
>gi|7212794|dbj|BAA92375.1| (AB032196) zinc finger transcription factor ZNF207
[Mus musculus]
Length = 495
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 495
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0061, P = 0.0061
Identities = 41/97 (42%), Positives = 49/97 (50%), Frame = +3
Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218
EERRA+L + Q + RP I P V P + PP PGL QQ PP MPP
Sbjct: 390 EERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPP-QPGLPQQ--QAMRPP--MPPHGQ 444
Query: 219 FGYQQQLVPGMXPGGGPMPSFFVPMVQ--QGQQGQRPVG-RP 335
+G Q +PG PG P PMV QG + P+G RP
Sbjct: 445 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRP 486
>gi|112206|pir||A39066 proline-rich protein 4 - rat
Length = 204
Frame 3 hits (HSPs): ___________________
Frame 1 hits (HSPs): _____
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM03894: PROLINE-RICHPROTEIN 1..159
__________________
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.0067, Sum P(2) = 0.0067
Identities = 30/79 (37%), Positives = 35/79 (44%), Frame = +3
Query: 108 TPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFF 284
TP+ P P +PP P G QQ QG P PPQ G + Q G P GGP
Sbjct: 29 TPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GPTPPGGPQQK-- 80
Query: 285 VPMVQQGQQGQRPVGRPRNR 344
P QQG P G P+ +
Sbjct: 81 -PPQPGNQQGPPPPGGPQQK 99
Score = 39 (13.7 bits), Expect = 0.0067, Sum P(2) = 0.0067
Identities = 10/21 (47%), Positives = 12/21 (57%), Frame = +1
Query: 343 GPVQQPQQPMPMMQQQMLPRG 405
GP Q+P QP QQ P+G
Sbjct: 171 GPQQRPPQPG---NQQSPPQG 188
>gi|12188891|emb|CAC21554.1| (AJ298278) poly(A) binding protein [Rattus
norvegicus]
Length = 636
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 636
0 150 300 450 600
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0086, P = 0.0085
Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173
A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418
Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326
PP A + P Q + Q +PG P P F M Q R +
Sbjct: 419 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 477
Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464
R + +T AAA A+ P + A R P +L+
Sbjct: 478 STQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLN 525
>gi|4505575 ref|NP_002559.1| poly(A)-binding protein, cytoplasmic 1 [Homo
sapiens] >gi|538581|pir||DNHUPA polyadenylate-binding protein -
human >gi|35570|emb|CAA68428.1| (Y00345) polyA binding protein (AA
1-633) [Homo sapiens]
Length = 633
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 633
0 150 300 450 600
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.012, P = 0.012
Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173
A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q
Sbjct: 356 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 415
Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326
PP A + P Q + Q +PG P P F M Q R +
Sbjct: 416 RAAYYPPSQVAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 474
Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464
R + +T AAA A+ P + A R P +L+
Sbjct: 475 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 522
>gi|11424065 ref|XP_005098.1| poly(A)-binding protein, cytoplasmic 1 [Homo
sapiens]
Length = 633
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 633
0 150 300 450 600
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.012, P = 0.012
Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173
A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q
Sbjct: 356 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 415
Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326
PP A + P Q + Q +PG P P F M Q R +
Sbjct: 416 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 474
Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464
R + +T AAA A+ P + A R P +L+
Sbjct: 475 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 522
>gi|6679197 ref|NP_032800.1| poly A binding protein, cytoplasmic 1; poly A
binding protein 1 [Mus musculus] >gi|129535|sp|P29341|PAB1_MOUSE
POLYADENYLATE-BINDING PROTEIN 1 (POLY(A)-BINDING PROTEIN 1) (PABP
1) (PABP1) >gi|2119041|pir||I48718 poly(A) binding protein - mouse
>gi|53754|emb|CAA46522.1| (X65553) poly(A) binding protein [Mus
musculus]
Length = 636
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 636
0 150 300 450 600
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.012, P = 0.012
Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173
A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418
Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326
PP A + P Q + Q +PG P P F M Q R +
Sbjct: 419 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 477
Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464
R + +T AAA A+ P + A R P +L+
Sbjct: 478 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 525
>gi|3183544|sp|P11940|PAB1_HUMAN POLYADENYLATE-BINDING PROTEIN 1
(POLY(A)-BINDING PROTEIN 1) (PABP 1) (PABP1)
>gi|1562511|gb|AAD08718.1| (U68105) poly(A)-binding protein [Homo
sapiens] >gi|8979741|emb|CAB96752.1| (AJ401269)
polyadenylate-binding protein 1 [Bos taurus]
Length = 636
Frame 3 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 636
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00030A: Eukaryotic RNA-binding region 13..31
BLOCKS BL00030B: Eukaryotic RNA-binding region 333..342
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 6..90
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 92..179
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 181..264
DOMO DM00012: RIBONUCLEOPROTEINREPEAT 286..363
DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 365..620
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 13..18
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 52..59
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 101..106
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 138..145
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 193..198
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 231..238
Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 296..301
Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 333..340
Entrez Domain: POLY-ALA. 495..501
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 13..84
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 101..170
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 193..263
PFAM rrm: RNA recognition motif. (a.k.a. RRM, 296..365
PFAM PABP: Poly-adenylate binding protein, un 543..614
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 14..50
PRODOM PD060589: PABP(4) PAB1(2) 52..96
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 102..132
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 137..186
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 194..228
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 230..278
PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 297..330
PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 332..381
PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 383..451
PRODOM PD012528: PAB1(2) PABP(1) Q62029(1) 460..527
PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 534..555
PRODOM PD002964: PABP(4) PAB1(2) 557..625
PROSITE RNP_1: Eukaryotic putative RNA-binding r 138..145
PROSITE RNP_1: Eukaryotic putative RNA-binding r 231..238
PROSITE RNP_1: Eukaryotic putative RNA-binding r 333..340
__________________
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.012, P = 0.012
Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173
A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q
Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418
Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326
PP A + P Q + Q +PG P P F M Q R +
Sbjct: 419 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 477
Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464
R + +T AAA A+ P + A R P +L+
Sbjct: 478 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 525
>gi|7413501|emb|CAB85692.1| (AJ271699) hypothetical protein [Agaricus bisporus]
Length = 109
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | | 109
0 20 40 60 80 100
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.018, P = 0.018
Identities = 29/74 (39%), Positives = 33/74 (44%), Frame = +3
Query: 48 KEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGY 227
K E++A+ Q P P P YP P QQ Y QGPP PPQ G+G
Sbjct: 1 KNEQQAQQPPQGGYYPPPQGPP---PGQGYYPQQPPQSYQQGGYYQGPP-QGPPQPGYGP 56
Query: 228 QQQLVPGMXPG-GGP 269
Q PG P GGP
Sbjct: 57 PQ---PGYGPQPGGP 68
>gi|481728|pir||S39206 proline-rich protein V-beta 1 precursor - rat
>gi|2144037|pir||A53118 ORF1 - black rat >gi|433617|emb|CAA52300.1|
(X74229) ORF1 [Rattus rattus] >gi|471332|emb|CAA54831.1| (X77816)
PR-Vbeta1 [Rattus norvegicus]
Length = 148
Frame 3 hits (HSPs): ___________________________
Frame 1 hits (HSPs): ____________
Annotated Domains: ________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
DOMO DM01427: 1..70
__________________
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.022, Sum P(2) = 0.022
Identities = 29/80 (36%), Positives = 31/80 (38%), Frame = +3
Query: 123 PRMPLYPPGAPGLGQ----QFLYGQGPPAMMPPQAG-FGYQQQLVPGMXPGGGPMPSFFV 287
P P PP PG+GQ F G GPP PP FG PG P P P F
Sbjct: 38 PPPPPPPPFGPGIGQPPPPHFGPGFGPPPPPPPPPPPFG------PGFGPPPPPPPFGFY 91
Query: 288 PMVQQGQQGQRPVGRPRNRSCATTP 362
P RP P R + P
Sbjct: 92 PPYIPHPPHHRPPANPPTRPPPSNP 116
Score = 46 (16.2 bits), Expect = 0.022, Sum P(2) = 0.022
Identities = 10/34 (29%), Positives = 16/34 (47%), Frame = +1
Query: 346 PVQQPQQPMPMMQQQMLPRG-LSIVTLLGRNMQD 444
P P +P P +Q +P +S+ T + N D
Sbjct: 113 PSNPPSRPPPTVQANTIPAANISVTTGIAPNSTD 146
>gi|12229876|sp|Q15097|PAB2_HUMAN POLYADENYLATE-BINDING PROTEIN 2 (POLY(A)
BINDING PROTEIN 2) (PABP 2) >gi|1082703|pir||S52491 polyadenylate
binding protein II - human >gi|693937|emb|CAA88401.1| (Z48501)
polyadenylate binding protein II [Homo sapiens]
Length = 522
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 522
0 150 300 450
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.024, P = 0.024
Identities = 26/49 (53%), Positives = 30/49 (61%), Frame = +3
Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG 149
A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G
Sbjct: 334 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 382
>gi|2665654|gb|AAB88449.1| (AF032896) polyadenylate binding protein [Petromyzon
marinus]
Length = 630
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 630
0 150 300 450 600
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.031, P = 0.030
Identities = 55/148 (37%), Positives = 67/148 (45%), Frame = +3
Query: 6 RFAG-KPLYVALAQRKEERRARLQAQFSQ----MRPVAITPSVAPRMPLYPPGAPGLGQQ 170
R G KPLYVALAQRKEER+ L +QF Q MR A+ PS + Y P A G
Sbjct: 357 RIIGSKPLYVALAQRKEERKMHLTSQFMQRLAGMR--AVPPSAI--IGQYQPAAAS-GY- 410
Query: 171 FLYGQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQG---QRPVGRPRN 341
F+ A MP QA G P P P + + + QG Q G R
Sbjct: 411 FM------AAMPQQAQ-GRTAYYTPSPMAPMRPNPRWPLQVRPQGAHAAGFQAITGPMRQ 463
Query: 342 RSCATTPAANANDAAAD----ASKGTFYRYPPWPQHARFP 449
+ T N A+ AS+G R P +P A P
Sbjct: 464 PAPRPTQMRTVNPASVPQVPRASQGMMPR-PTFPTQAAGP 502
>gi|11602912 ref|NP_062603.1| proline-rich protein B, salivary; proline-rich
salivary protein [Mus musculus] >gi|91204|pir||A29149 proline-rich
protein - mouse >gi|200539|gb|AAA40000.1| (M11900) 15-kDa
proline-rich salivary protein [Mus musculus]
Length = 147
Frame 3 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.033, P = 0.033
Identities = 37/114 (32%), Positives = 45/114 (39%), Frame = +3
Query: 108 TPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFF 284
TP+ P P +PP P G QQ QG P PPQ G + Q G P GGP
Sbjct: 29 TPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GPPPPGGPQQK-- 80
Query: 285 VPMVQQGQQGQRPVGRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHARFP 449
P QQG P G P+ + P + G R PP P + + P
Sbjct: 81 -PPQPGNQQGPPPPGGPQQK-----PPQSGKPQGPPPPGGPQQR-PPQPGNQQSP 128
>gi|12229883|sp|Q9ZQA8|PABX_ARATH PROBABLE POLYADENYLATE-BINDING PROTEIN
(POLY(A) BINDING PROTEIN) (PABP) >gi|4415911|gb|AAD20142.1|
(AC006282) putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 609
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | || 609
0 150 300 450 600
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.039, P = 0.038
Identities = 27/60 (45%), Positives = 36/60 (60%), Frame = +3
Query: 9 FAGKPLYVALAQRKEERRARLQAQFS---QMRPVAITPSVAPRM--PLYPPGA-PGLGQQ 170
F GKPLYVA+AQ+KE+R+ +LQ QF + R + + SV P PLY PG+ Q
Sbjct: 369 FHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPGMVYQ 428
>gi|7481762|pir||T42100 serine/threonine protein kinase (EC 2.7.1.-) -
Streptomyces coelicolor >gi|3766230|gb|AAC64406.1| (AF094711)
serine/threonine protein kinase [Streptomyces coelicolor A3(2)]
Length = 556
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 556
0 150 300 450
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.048, P = 0.047
Identities = 42/133 (31%), Positives = 54/133 (40%), Frame = +3
Query: 33 ALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAP-----GLGQQFL--YGQGP 191
AL + ER +A + VA + AP P PGA G+G GQG
Sbjct: 267 ALKKNPNERFPSAEAMRDECLRVAASFQAAP--PSIVPGAQTSSGAGVGSAVFPPVGQGT 324
Query: 192 PAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQG--QRPVGRP--RNRSCATT 359
PA P YQ L PG P G P P+ P QQ Q P P + ++ AT
Sbjct: 325 PAPTGP-VQTPYQPTLSPGPNPYGTPAPAAHSPAYGYPQQAGYQTPAPAPYAQQQAAATP 383
Query: 360 PAANANDAAADASKGT 407
P N +A + G+
Sbjct: 384 PPYNLTPSAQGSGSGS 399
>gi|112205|pir||B39066 proline-rich protein 15 - rat
Length = 278
Frame 3 hits (HSPs): ____________________________
Frame 1 hits (HSPs): _____ _______
Annotated Domains: ___________________________ ________________
__________________________________________________
Database sequence: | | | | | | | 278
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM03894: PROLINE-RICHPROTEIN 1..111
DOMO DM00250: 112..148
DOMO DM01369: PROLINE-RICHPROTEIN 172..256
__________________
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.056, Sum P(2) = 0.054
Identities = 36/84 (42%), Positives = 38/84 (45%), Frame = +3
Query: 87 QMRPVAITPSVAP--RMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPG 260
Q +P P P R P PP PG G Q QGPP PP G QQ G P
Sbjct: 73 QQKPQGPPPPGGPQQRPPQGPP-PPG-GPQ----QGPPQGPPPPGG---PQQRPQGPPPP 123
Query: 261 GGPM--PSFFVPM--VQQGQQGQRPVGRPR 338
GGP P P QQG QG P G P+
Sbjct: 124 GGPQQGPQGPPPPGGPQQGPQGPPPPGGPQ 153
Score = 85 (29.9 bits), Expect = 0.29, Sum P(2) = 0.26
Identities = 32/82 (39%), Positives = 34/82 (41%), Frame = +3
Query: 111 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGF--GYQQQLVPGMXPGGGPM--PS 278
P P+ P PPG P G Q G P PPQ G QQ G P GGP P
Sbjct: 126 PQQGPQGPP-PPGGPQQGPQGPPPPGGPQQSPPQGPPPPGGPQQGPQGPPPPGGPQQSPP 184
Query: 279 FFVPMV---QQGQQGQRPVGRPR 338
P QQG QG P G P+
Sbjct: 185 QGPPPPGGPQQGPQGPPPPGGPQ 207
Score = 83 (29.2 bits), Expect = 0.54, Sum P(2) = 0.42
Identities = 29/76 (38%), Positives = 32/76 (42%), Frame = +3
Query: 111 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGF--GYQQQLVPGMXPGGGPMPSFF 284
P +P PPG P G Q G P PPQ G QQ G P GGP
Sbjct: 152 PQQSPPQGPPPPGGPQQGPQGPPPPGGPQQSPPQGPPPPGGPQQGPQGPPPPGGP----- 206
Query: 285 VPMVQQGQQGQRPVGRPR 338
QQG+QG P G P+
Sbjct: 207 ----QQGRQGPPPPGGPQ 220
Score = 41 (14.4 bits), Expect = 0.056, Sum P(2) = 0.054
Identities = 11/22 (50%), Positives = 12/22 (54%), Frame = +1
Query: 343 GPVQQPQQPMPMM-QQQMLPRG 405
GP Q PQ P P QQ P+G
Sbjct: 165 GPQQGPQGPPPPGGPQQSPPQG 186
Score = 39 (13.7 bits), Expect = 0.089, Sum P(2) = 0.085
Identities = 12/32 (37%), Positives = 15/32 (46%), Frame = +1
Query: 313 GSAQWAARGTGPVQQPQQPMPMM-QQQMLPRG 405
G Q +G P +PQQ P QQ P+G
Sbjct: 232 GPQQRPPQGPPPPGRPQQRPPQPGNQQGPPQG 263
>gi|6981414 ref|NP_036764.1| proline-rich protein, salivary [Rattus norvegicus]
>gi|92651|pir||A30496 proline-rich protein 13 - rat
>gi|206710|gb|AAA42063.1| (M64792) salivary proline-rich protein
[Rattus norvegicus]
Length = 164
Frame 3 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | 164
0 50 100 150
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.059, P = 0.057
Identities = 42/130 (32%), Positives = 54/130 (41%), Frame = +3
Query: 75 AQFSQMRPVAITPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGF-------GYQ 230
AQ ++++ + TP+ P P +PP P G QQ QG P PPQ G G
Sbjct: 16 AQEAELQSLDQTPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPGKPQGPPPPGGP 75
Query: 231 QQLVP------GMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANANDAAAD 392
QQ P G P GGP P QQG P G P+ + P +
Sbjct: 76 QQKPPQPGKPQGPPPPGGPQQK---PPQPGNQQGPPPPGGPQQK-----PPQSGKPQGPP 127
Query: 393 ASKGTFYRYPPWPQHARFP 449
G R PP P + + P
Sbjct: 128 PPGGPQQR-PPQPGNQQSP 145
WARNING: HSPs involving 187 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.323 0.138 0.457
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.324 0.131 0.500
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.341 0.151 0.510
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.338 0.152 0.568
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.319 0.132 0.427
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.334 0.144 0.518
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 166 163 10. 75 3 12 22 0.10 34
30 0.10 37
+2 0 167 164 10. 75 3 12 22 0.10 34
30 0.10 37
+1 0 167 165 10. 75 3 12 22 0.10 34
30 0.10 37
-1 0 167 164 10. 75 3 12 22 0.10 34
30 0.10 37
-2 0 167 165 10. 75 3 12 22 0.10 34
30 0.10 37
-3 0 166 164 10. 75 3 12 22 0.10 34
30 0.10 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 237
No. of states in DFA: 582 (57 KB)
Total size of DFA: 230 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 214.04u 1.05s 215.09t Elapsed: 00:00:38
Total cpu time: 214.10u 1.11s 215.21t Elapsed: 00:00:38
Start: Mon Oct 1 20:50:15 2001 End: Mon Oct 1 20:50:53 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000