WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract
RepeatMasker repeats found in sequence:No Repeats Found.Reference: Gish, Warren (1994-1997). unpublished. Gish, Warren and David J. States (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-72.Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame in the query sequence codes for protein and that significant alignments will involve only coding reading frames.
Query= A08F01_2_CONSENSUS (502 letters)
Translating both strands of query sequence in all 6 reading framesDatabase: nr 625,274 sequences; 197,782,623 total letters.Observed Numbers of Database Sequences Satisfying Various EXPECTation Thresholds (E parameter values) Histogram units: = 10 Sequences : less than 10 sequences EXPECTation Threshold (E parameter) | V Observed Counts--> 10000 4056 600 |============================================================ 6310 3456 509 |================================================== 3980 2947 476 |=============================================== 2510 2471 469 |============================================== 1580 2002 368 |==================================== 1000 1634 360 |==================================== 631 1274 202 |==================== 398 1072 225 |====================== 251 847 161 |================ 158 686 104 |========== 100 582 89 |======== 63.1 493 80 |======== 39.8 413 54 |===== 25.1 359 55 |===== 15.8 304 67 |====== >>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 237 <<<<<<<<<<<<<<<<< 10.0 237 44 |==== 6.31 193 30 |=== 3.98 163 24 |== 2.51 139 20 |== 1.58 119 23 |== 1.00 96 13 |= 0.63 83 12 |= 0.40 71 3 |: 0.25 68 9 |: 0.16 59 3 |: 0.10 56 5 |: 0.063 51 4 |: 0.040 47 3 |: 0.025 44 3 |: 0.016 41 4 |: 0.010 37 2 |: 0.0063 35 2 |: 0.0040 33 2 |: 0.0025 31 1 |: 0.0016 30 3 |: Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N gi|7673359|gb|AAF66825.1|(AF190657) poly(A)-binding p... +3 506 1.8e-47 1 gi|7673355|gb|AAF66823.1|AF190655_1(AF190655) poly(A)... +3 495 2.6e-46 1 gi|7673357|gb|AAF66824.1|AF190656_1(AF190656) poly(A)... +3 490 8.9e-46 1 gi|1171978|sp|P42731|PAB2_ARATHPOLYADENYLATE-BINDING ... +3 448 2.5e-41 1 gi|7439964|pir||T00497polyadenylate-binding protein T... +3 364 3.1e-41 2 gi|7528270|gb|AAF63202.1|AF240679_1(AF240679) poly(A)... +3 447 4.1e-41 1 gi|10120431|gb|AAG13056.1|AC011807_15(AC011807) Putat... +3 423 3.3e-38 1 gi|7439967|pir||T06979polyadenylate-binding protein -... +3 386 4.0e-38 2 gi|480602|pir||S37085polyadenylate-binding protein - ... +3 310 6.9e-26 1 gi|5007080|gb|AAD37807.1|(AF153689) poly(A)-binding p... +3 260 2.1e-21 1 gi|1171979|sp|Q05196|PAB5_ARATHPOLYADENYLATE-BINDING ... +3 212 2.9e-15 1 gi|7239504|gb|AAF43230.1|AC012654_14(AC012654) Identi... +3 212 2.9e-15 1 gi|12643628|sp|O64380|PAB3_ARATHPOLYADENYLATE-BINDING... +3 205 1.6e-14 1 gi|9930616|gb|AAG02117.1|AF293840_1(AF293840) poly(A)... +3 205 1.6e-14 1 gi|7439965|pir||T00768polyadenylate-binding protein T... +3 172 5.6e-11 1 gi|1616770|gb|AAB16848.1|(U70731) putative poly(A)-bi... +3 124 1.3e-08 2 gi|3123239|sp|P31209|PABP_SCHPOPOLYADENYLATE-BINDING ... +3 142 9.2e-08 1 gi|538583|pir||DNZPPApolyadenylate-binding protein - ... +3 132 1.0e-06 1 gi|7439963|pir||T07933polyadenylate-binding protein R... +3 131 1.3e-06 1 gi|7509318|pir||T26427hypothetical protein Y106G6H.2 ... +3 128 2.9e-06 1 gi|4335716|gb|AAD17394.1|(AC006248) putative poly(A)-... +3 94 7.9e-06 2 gi|780291|gb|AAA65224.1|(U24123) polyadenylate-bindin... +3 123 9.9e-06 1 gi|12655478|emb|CAC27591.1|(AJ406952) keratin associa... -1 77 2.0e-05 2 gi|64970|emb|CAA40721.1|(X57483) polyA binding protei... +3 119 2.6e-05 1 gi|7484631|pir||T12420polyadenylate-binding protein -... +1 114 3.9e-05 1 gi|1352709|sp|P20965|PABP_XENLAPOLYADENYLATE-BINDING ... +3 118 0.00010 1 gi|172092|gb|AAA34838.1|(M12780) polyadenylate-bindin... +3 114 0.00063 1 gi|4504715ref|NP_003810.1| poly(A)-binding protein, c... +3 113 0.0010 1 gi|206716|gb|AAA42066.1|(M64791) salivary proline-ric... +3 98 0.0012 2 gi|4508017ref|NP_003448.1| zinc finger protein 207 [H... +3 111 0.0015 1 gi|6321013ref|NP_011092.1| Poly(A) binding protein, c... +3 111 0.0020 1 gi|7499382|pir||T21096hypothetical protein F18H3.3b -... +3 110 0.0027 1 gi|7499381|pir||T21095hypothetical protein F18H3.3a -... +3 110 0.0035 1 gi|6756051ref|NP_035881.1| zinc finger protein 207 [M... +3 107 0.0055 1 gi|7212794|dbj|BAA92375.1|(AB032196) zinc finger tran... +3 107 0.0061 1 gi|112206|pir||A39066proline-rich protein 4 - rat +3 93 0.0067 2 gi|12188891|emb|CAC21554.1|(AJ298278) poly(A) binding... +3 107 0.0085 1 gi|4505575ref|NP_002559.1| poly(A)-binding protein, c... +3 106 0.012 1 gi|11424065ref|XP_005098.1| poly(A)-binding protein, ... +3 106 0.012 1 gi|6679197ref|NP_032800.1| poly A binding protein, cy... +3 106 0.012 1 gi|3183544|sp|P11940|PAB1_HUMANPOLYADENYLATE-BINDING ... +3 106 0.012 1 gi|7413501|emb|CAB85692.1|(AJ271699) hypothetical pro... +3 83 0.018 1 gi|481728|pir||S39206proline-rich protein V-beta 1 pr... +3 79 0.022 2 gi|12229876|sp|Q15097|PAB2_HUMANPOLYADENYLATE-BINDING... +3 103 0.024 1 gi|2665654|gb|AAB88449.1|(AF032896) polyadenylate bin... +3 103 0.030 1 gi|11602912ref|NP_062603.1| proline-rich protein B, s... +3 92 0.033 1 gi|12229883|sp|Q9ZQA8|PABX_ARATHPROBABLE POLYADENYLAT... +3 102 0.038 1 gi|7481762|pir||T42100serine/threonine protein kinase... +3 101 0.047 1 gi|112205|pir||B39066proline-rich protein 15 - rat +3 89 0.054 2 gi|6981414ref|NP_036764.1| proline-rich protein, sali... +3 92 0.057 1 Locally-aligned regions (HSPs) with respect to query sequence: Locus_ID Frame 3 Hits gi|7673359 |__________________________________________ gi|7673355 | _________________________________________ gi|7673357 | _________________________________________ gi|1171978 |__________________________________________ gi|7439964 |_________________________________ gi|7528270 | _________________________________________ gi|10120431 |______________________________________________ gi|7439967 | ________________________________ gi|480602 | ________________________________ gi|5007080 | ____________________ gi|1171979 | ________________________________ gi|7239504 | ________________________________ gi|12643628 | ___________________________________ gi|9930616 | _______________________________ gi|7439965 | ___________________________________ gi|1616770 | ________________________________ gi|3123239 |_______________________________________ gi|538583 |_______________________________________ gi|7439963 |________________________________________ gi|7509318 | _____________________________________________ gi|4335716 |__________________ gi|780291 | _____________________________________________ gi|64970 |________________________________________ gi|1352709 |________________________________________ gi|172092 |__________________________________ gi|4504715 |________________________________________ gi|206716 | ___________________________ gi|4508017 | _________________________________ gi|6321013 |__________________________________ gi|7499382 | ____________________________________ gi|7499381 | ____________________________________ gi|6756051 | ______________________________ gi|7212794 | ______________________________ gi|112206 | ________________________ gi|12188891 |______________________________________________ gi|4505575 |______________________________________________ gi|11424065 |______________________________________________ gi|6679197 |______________________________________________ gi|3183544 |______________________________________________ gi|7413501 | _______________________ gi|481728 | _________________________ gi|12229876 |_______________ gi|2665654 |_____________________________________________ gi|11602912 | ___________________________________ gi|12229883 |_________________ gi|7481762 | _______________________________________ gi|112205 | __________________________ gi|6981414 | ______________________________________ __________________________________________________ Query sequence: | | | | | 168 0 50 100 150 Locus_ID Frame 1 Hits gi|7673359 | ______________________ gi|7673355 | ______________________ gi|7673357 | ______________________ gi|1171978 | _______ gi|7439964 | ______________________ gi|7528270 | _____________________ gi|10120431 | _______________ gi|7439967 | ______________ gi|1616770 | ____________ gi|7484631 | _______________ gi|206716 | _______ gi|112206 | _______ gi|481728 | __________ gi|112205 | __________ __________________________________________________ Query sequence: | | | | | 168 0 50 100 150 Locus_ID Frame -1 Hits gi|12655478 | __________________________ __________________________________________________ Query sequence: | | | | | 168 0 50 100 150 Locus_ID Frame -3 Hits gi|12655478 | _____ __________________________________________________ Query sequence: | | | | | 168 0 50 100 150
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WARNING: Descriptions of 187 database sequences were not reported due to the limiting value of parameter V = 50.>gi|7673359|gb|AAF66825.1| (AF190657) poly(A)-binding protein [Nicotiana tabacum] Length = 479 Frame 3 hits (HSPs): _____ _______________ Frame 1 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | | 479 0 150 300 450 Plus Strand HSPs: Score = 506 (178.1 bits), Expect = 1.8e-47, P = 1.8e-47 Identities = 95/136 (69%), Positives = 107/136 (78%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVALAQRKEERRA+L+AQFSQ+RPVA+ PS+APRMP+YPPGAPG+GQQ YGQGPPA Sbjct: 210 KPLYVALAQRKEERRAKLRAQFSQLRPVAMPPSLAPRMPIYPPGAPGIGQQLFYGQGPPA 269 Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANAN 377 M+PPQAGFGYQQQLVPGM PGG PMP+FF+P+VQQGQQGQRP GR T Sbjct: 270 MIPPQAGFGYQQQLVPGMRPGGAPMPNFFMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPL 329 Query: 378 DAAADASKGTFYRYPP 425 +G YRYPP Sbjct: 330 MQQQMLPRGRMYRYPP 345 Score = 166 (58.4 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15 Identities = 36/73 (49%), Positives = 41/73 (56%), Frame = +1 Query: 268 PCQASLFPWFSRANKGSAQWAARGTGPVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQDF 447 P P + +G RG GPVQQ QQPMP+MQQQMLPRG GRN + Sbjct: 293 PMPNFFMPLVQQGQQGQRPGGRRGAGPVQQTQQPMPLMQQQMLPRGRMYRYPPGRNGPEG 352 Query: 448 PLPICTGGMLSVP 486 P+P GGMLSVP Sbjct: 353 PMPGVPGGMLSVP 365 Score = 61 (21.5 bits), Expect = 9.9e-15, Sum P(2) = 9.9e-15 Identities = 13/34 (38%), Positives = 19/34 (55%), Frame = +3 Query: 6 RFAGKPLYVALAQRKEERRARLQAQFSQMRPVAI 107 +F K YV AQ+K ER L+++F Q A+ Sbjct: 103 KFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAV 136
>gi|7673355|gb|AAF66823.1|AF190655_1 (AF190655) poly(A)-binding protein [Nicotiana tabacum] Length = 649 Frame 3 hits (HSPs): ___ ____________ Frame 1 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | | | 649 0 150 300 450 600 Plus Strand HSPs: Score = 495 (174.2 bits), Expect = 2.6e-46, P = 2.6e-46 Identities = 97/137 (70%), Positives = 105/137 (76%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVALAQRKEERRARLQAQFSQMRP+A+ SVAPRMP+YPPG PGLGQQ YGQ PA Sbjct: 377 KPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPA 436 Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANAN 377 M+PPQAGFGYQQQLVPGM PGGGPMP+FF+PMVQQGQQGQRP GR R + Sbjct: 437 MLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRPGGR-RGGAVPLQQGQQPV 495 Query: 378 DAAADAS--KGTFYRYPP 425 +G YRYPP Sbjct: 496 PLMQQQMFPRGRGYRYPP 513 Score = 128 (45.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09 Identities = 29/74 (39%), Positives = 36/74 (48%), Frame = +1 Query: 268 PCQASLFPWFSRANKGSAQWAARGTG-PVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQD 444 P P + +G RG P+QQ QQP+P+MQQQM PRG GR + D Sbjct: 460 PMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPD 519 Query: 445 FPLPICTGGMLSVP 486 P GGM S+P Sbjct: 520 VAFPGVGGGMFSIP 533 Score = 51 (18.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09 Identities = 12/33 (36%), Positives = 17/33 (51%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPS 116 K +V AQ+K ER L+ +F Q A+ S Sbjct: 274 KDWFVGRAQKKSEREMELKHRFEQSAKEAVDKS 306
>gi|7673357|gb|AAF66824.1|AF190656_1 (AF190656) poly(A)-binding protein [Nicotiana tabacum] Length = 330 Frame 3 hits (HSPs): ______________________ Frame 1 hits (HSPs): ____________ __________________________________________________ Database sequence: | | | | 330 0 150 300 Plus Strand HSPs: Score = 490 (172.5 bits), Expect = 8.9e-46, P = 8.9e-46 Identities = 96/137 (70%), Positives = 104/137 (75%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVALAQRKEERRARLQAQFSQMRP+A+ SVAPRMP+YPPG PGLGQQ YGQ PA Sbjct: 58 KPLYVALAQRKEERRARLQAQFSQMRPIAMASSVAPRMPMYPPGGPGLGQQIFYGQPQPA 117 Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANAN 377 M+PPQAGFGYQQQLVPGM PGGGPMP+FF+PMVQQGQQGQRP G R + Sbjct: 118 MLPPQAGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQQGQRP-GSRRGGAVPLQQGQQPV 176 Query: 378 DAAADAS--KGTFYRYPP 425 +G YRYPP Sbjct: 177 PLMQQQMFPRGRGYRYPP 194 Score = 129 (45.4 bits), Expect = 7.4e-07, P = 7.4e-07 Identities = 29/74 (39%), Positives = 37/74 (50%), Frame = +1 Query: 268 PCQASLFPWFSRANKGSAQWAARGTG-PVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQD 444 P P + +G + RG P+QQ QQP+P+MQQQM PRG GR + D Sbjct: 141 PMPNFFMPMVQQGQQGQRPGSRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPGRGLPD 200 Query: 445 FPLPICTGGMLSVP 486 P GGM S+P Sbjct: 201 VAFPGVGGGMFSIP 214
>gi|1171978|sp|P42731|PAB2_ARATH POLYADENYLATE-BINDING PROTEIN 2 (POLY(A) BINDING PROTEIN 2) (PABP 2) >gi|7439968|pir||T05425 polyadenylate-binding protein F28A23.130 - Arabidopsis thaliana >gi|304109|gb|AAA61780.1| (L19418) poly(A)-binding protein [Arabidopsis thaliana] >gi|2911051|emb|CAA17561.1| (AL021961) poly(A)-binding protein [Arabidopsis thaliana] >gi|7270360|emb|CAB80128.1| (AL161584) poly(A)-binding protein [Arabidopsis thaliana] Length = 629 Frame 3 hits (HSPs): ___ ____________ Frame 1 hits (HSPs): ___ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | 629 0 150 300 450 600 __________________ Annotated Domains: BLOCKS BL00030A: Eukaryotic RNA-binding region 217..235 BLOCKS BL00030B: Eukaryotic RNA-binding region 255..264 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 31..115 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 117..204 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 206..291 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 313..392 DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 394..620 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 38..43 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 77..84 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 126..131 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 164..171 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 217..222 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 255..262 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 320..325 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 358..365 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 38..109 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 126..196 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 217..287 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 320..390 PFAM PABP: Poly-adenylate binding protein, un 540..611 PRODOM PD055999: PAB2_ARATH 1..37 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 39..75 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 78..121 PRODOM PD186424: 123..160 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 163..204 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 218..250 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 254..303 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 321..352 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 357..399 PRODOM PD066173: Q39953(2) 402..551 PRODOM PD002964: PABP(4) PAB1(2) 554..612 PROSITE RNP_1: Eukaryotic putative RNA-binding r 164..171 PROSITE RNP_1: Eukaryotic putative RNA-binding r 255..262 PROSITE RNP_1: Eukaryotic putative RNA-binding r 358..365 __________________ Plus Strand HSPs: Score = 448 (157.7 bits), Expect = 2.5e-41, P = 2.5e-41 Identities = 86/135 (63%), Positives = 99/135 (73%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVA+AQRKE+RR RLQAQFSQ+RPVA+ PSV PRMP+YPPG PG+GQQ YGQ PPA Sbjct: 386 KPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPA 445 Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANAN 377 M+PPQ G+GYQQQLVPGM PGGGP+PSFF+PMVQ QQ RP G R + N Sbjct: 446 MIPPQPGYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQ--RPGGGRRPGGIQHSQQQNPM 503 Query: 378 DAAADASKGTFYRYP 422 +G +RYP Sbjct: 504 MQQQMHPRGRMFRYP 518 Score = 72 (25.3 bits), Expect = 2.0, Sum P(2) = 0.87 Identities = 15/24 (62%), Positives = 16/24 (66%), Frame = +1 Query: 334 RGTGPVQQPQQPMPMMQQQMLPRG 405 R G +Q QQ PMMQQQM PRG Sbjct: 489 RRPGGIQHSQQQNPMMQQQMHPRG 512 Score = 56 (19.7 bits), Expect = 2.0, Sum P(2) = 0.87 Identities = 11/28 (39%), Positives = 16/28 (57%), Frame = +3 Query: 6 RFAGKPLYVALAQRKEERRARLQAQFSQ 89 +F K YV AQ+K ER L+ ++ Q Sbjct: 279 KFDDKEWYVGRAQKKSERETELRVRYEQ 306
>gi|7439964|pir||T00497 polyadenylate-binding protein T20D16.2 - Arabidopsis thaliana >gi|2642429|gb|AAB87097.1| (AC002391) putative poly(A)-binding protein [Arabidopsis thaliana] Length = 662 Frame 3 hits (HSPs): ___ _________ Frame 1 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | | | 662 0 150 300 450 600 Plus Strand HSPs: Score = 364 (128.1 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41 Identities = 75/106 (70%), Positives = 82/106 (77%), Frame = +3 Query: 15 GKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPP 194 GKPLYVALAQRKEERRA+LQAQFSQMRP A P V PRMP++ GAPGLGQQ YGQGPP Sbjct: 395 GKPLYVALAQRKEERRAKLQAQFSQMRP-AFIPGVGPRMPIFTGGAPGLGQQIFYGQGPP 453 Query: 195 AMMPPQAGFGYQQQLVPGMXPGGGPMPSFFV-PMVQQGQQGQRPVGR 332 ++P Q GFGYQ QLVPGM P +FF PM+Q GQQG RP GR Sbjct: 454 PIIPHQPGFGYQPQLVPGMRP------AFFGGPMMQPGQQGPRPGGR 494 Score = 113 (39.8 bits), Expect = 3.1e-41, Sum P(2) = 3.1e-41 Identities = 31/71 (43%), Positives = 38/71 (53%), Frame = +1 Query: 289 PWFSRANKGSAQWAAR-GTGPVQ-QPQQPMPMMQQQMLPRGLSI-VTLLGRNMQDFPLPI 459 P +G R G GP++ Q QQPMP MQ QM+PRG GRNM D P+P Sbjct: 480 PMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYMQPQMMPRGRGYRYPSGGRNMPDGPMP- 538 Query: 460 CTGGMLSVPXKLEV 501 GGM+ V + V Sbjct: 539 --GGMVPVAYDMNV 550 Score = 53 (18.7 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06 Identities = 11/28 (39%), Positives = 15/28 (53%), Frame = +3 Query: 6 RFAGKPLYVALAQRKEERRARLQAQFSQ 89 +F K YV AQ+K ER L ++ Q Sbjct: 289 KFDDKEWYVGKAQKKSERELELSRRYEQ 316
>gi|7528270|gb|AAF63202.1|AF240679_1 (AF240679) poly(A)-binding protein [Cucumis sativus] Length = 649 Frame 3 hits (HSPs): __ ___________ Frame 1 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | | | 649 0 150 300 450 600 Plus Strand HSPs: Score = 447 (157.4 bits), Expect = 4.1e-41, P = 4.1e-41 Identities = 89/136 (65%), Positives = 101/136 (74%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR-MPLYPPGAPGLGQQFLYGQGPP 194 KPLYVALAQRKE+R ARLQAQFSQM+P+A+ SVAPR MP+YPPG PG+GQQ YGQ PP Sbjct: 379 KPLYVALAQRKEDRIARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPP 438 Query: 195 AMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANA 374 ++ Q GFGYQQQL+PGM PGGGPMP+FFVPMVQQGQQGQR GR R + T Sbjct: 439 TIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGR-RAGAIQQTQQPVP 497 Query: 375 NDAAADASKGTFYRYPP 425 +G YRYPP Sbjct: 498 LMQQQMLPRGRVYRYPP 514 Score = 144 (50.7 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12 Identities = 30/69 (43%), Positives = 39/69 (56%), Frame = +1 Query: 289 PWFSRANKGSAQWAARGTGPVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQDFPLPICTG 468 P + +G R G +QQ QQP+P+MQQQMLPRG GR + D P+P G Sbjct: 470 PMVQQGQQGQRS-GGRRAGAIQQTQQPVPLMQQQMLPRGRVYRYPPGRGLPDLPMPGVAG 528 Query: 469 GMLSVPXKL 495 GM SVP ++ Sbjct: 529 GMFSVPYEM 537 Score = 61 (21.5 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12 Identities = 12/25 (48%), Positives = 16/25 (64%), Frame = +3 Query: 15 GKPLYVALAQRKEERRARLQAQFSQ 89 GK YV AQ+K ER L+++F Q Sbjct: 275 GKEWYVGKAQKKSEREVELKSRFEQ 299
>gi|10120431|gb|AAG13056.1|AC011807_15 (AC011807) Putative Poly-A Binding Protein [Arabidopsis thaliana] Length = 671 Frame 3 hits (HSPs): ___ ____________ Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | | 671 0 150 300 450 600 Plus Strand HSPs: Score = 423 (148.9 bits), Expect = 3.3e-38, P = 3.3e-38 Identities = 88/154 (57%), Positives = 102/154 (66%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVALAQRKE+R+ARLQAQFSQMRPV + P+V PRM +YPPG P +GQQ YGQGPPA Sbjct: 395 KPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGPPA 454 Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVG---RPRNRSCATTPAA 368 M+P Q GFGYQQQLVPGM PGG PMP+FF+PM+QQGQQ Q+ RP P Sbjct: 455 MIP-QPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQP 513 Query: 369 NANDAAADAS---KGTFYRYPPWPQHAR-FPTSNL 461 +G YRYP + PT N+ Sbjct: 514 QQPSPMMQQQMHPRGRMYRYPQRDVNTMPGPTQNM 548 Score = 100 (35.2 bits), Expect = 0.0015, Sum P(2) = 0.0015 Identities = 25/48 (52%), Positives = 29/48 (60%), Frame = +1 Query: 343 GPVQQPQQPMPMMQQQMLPRGLSIVTLLGRNMQDFPLPICTGGMLSVP 486 G + QPQQP PMMQQQM PRG + R++ P P T MLSVP Sbjct: 508 GALPQPQQPSPMMQQQMHPRG-RMYRYPQRDVNTMPGP--TQNMLSVP 552 Score = 52 (18.3 bits), Expect = 0.0015, Sum P(2) = 0.0015 Identities = 11/27 (40%), Positives = 15/27 (55%), Frame = +3 Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQ 89 F K +V AQ+K ER L+ +F Q Sbjct: 289 FDDKEWFVGKAQKKSERETELKQKFEQ 315
>gi|7439967|pir||T06979 polyadenylate-binding protein - wheat >gi|1737492|gb|AAB38974.1| (U81318) poly(A)-binding protein [Triticum aestivum] Length = 651 Frame 3 hits (HSPs): _________ Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | | 651 0 150 300 450 600 Plus Strand HSPs: Score = 386 (135.9 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38 Identities = 73/105 (69%), Positives = 84/105 (80%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVALAQRKE+R+ARLQAQFSQMRPV + +V PRM + PPG P +GQQ YGQ PPA Sbjct: 382 KPLYVALAQRKEDRKARLQAQFSQMRPVPMAQTVGPRMQMLPPGVP-VGQQMFYGQ-PPA 439 Query: 198 MMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGR 332 + PQ GFG+QQ +PGM PGG PMP+F +PMVQQGQQ QRP GR Sbjct: 440 FINPQPGFGFQQPFMPGMRPGGAPMPNFMMPMVQQGQQPQRPAGR 484 Score = 59 (20.8 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38 Identities = 19/46 (41%), Positives = 24/46 (52%), Frame = +1 Query: 361 QQPMPMMQQQMLPRG--LSIVTLLGRNMQDFPLPICTGGMLSVPXKL 495 QQ M M QQQML RG GR M D P GG+++ P ++ Sbjct: 492 QQSMQMGQQQMLGRGGGRGYRYQTGRGMPD-PAMHGVGGVMTSPYEM 537
>gi|480602|pir||S37085 polyadenylate-binding protein - fern (Anemia phyllitidis) >gi|398327|emb|CAA81127.1| (Z26042) poly(A)-mRNA binding protein [Anemia phyllitidis] Length = 638 Frame 3 hits (HSPs): _________ Annotated Domains: _____________________ __________________________ __________________________________________________ Database sequence: | | | | | | 638 0 150 300 450 600 __________________ Annotated Domains: DOMO DM00012: RIBONUCLEOPROTEINREPEAT 21..105 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 107..193 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 195..279 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 302..380 DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 382..620 Entrez domain: ribonucleoprotein repeat homolog 27..94 Entrez domain: ribonucleoprotein repeat homolog 115..181 Entrez domain: ribonucleoprotein repeat homolog 205..271 Entrez domain: ribonucleoprotein repeat homolog 308..374 PROSITE RNP_1: Eukaryotic putative RNA-binding r 154..161 __________________ Plus Strand HSPs: Score = 310 (109.1 bits), Expect = 6.9e-26, P = 6.9e-26 Identities = 64/108 (59%), Positives = 78/108 (72%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAIT-PSVAPRMP-LYPPGAPGLGQQFLYGQGP 191 KPLYVALAQRKEERRARLQAQF+QM+ VA P +AP P +Y PG G+G Q YGQ Sbjct: 375 KPLYVALAQRKEERRARLQAQFAQMQIVAPNAPPMAPNPPSMYHPGPQGMGHQMFYGQPA 434 Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGR 332 P ++P QA GFGYQQ +VP M P +P++F+P+ + GQQ QRPV R Sbjct: 435 PGLLPSQANGFGYQQPMVPTMRPTSAGVPNYFMPVQRPGQQIQRPVNR 482
>gi|5007080|gb|AAD37807.1| (AF153689) poly(A)-binding protein [Oryza sativa] Length = 183 Frame 3 hits (HSPs): ___________________ __________________________________________________ Database sequence: | | | | | 183 0 50 100 150 Plus Strand HSPs: Score = 260 (91.5 bits), Expect = 2.1e-21, P = 2.1e-21 Identities = 47/65 (72%), Positives = 55/65 (84%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVALAQRKE+R+ARLQAQFSQ+RPV + PSV PRMP++PPG PG+GQQ YGQ PPA Sbjct: 117 KPLYVALAQRKEDRKARLQAQFSQLRPVPLAPSVGPRMPMFPPGVPGVGQQLFYGQPPPA 176 Query: 198 MMPPQ 212 + Q Sbjct: 177 FINTQ 181
>gi|1171979|sp|Q05196|PAB5_ARATH POLYADENYLATE-BINDING PROTEIN 5 (POLY(A) BINDING PROTEIN 5) (PABP 5) >gi|166786|gb|AAA32832.1| (M97657) poly(A)-binding protein [Arabidopsis thaliana] Length = 668 Frame 3 hits (HSPs): _________ Annotated Domains: _________________________________________________ __________________________________________________ Database sequence: | | | | | | 668 0 150 300 450 600 __________________ Annotated Domains: BLOCKS BL00030B: Eukaryotic RNA-binding region 172..181 BLOCKS BL00030A: Eukaryotic RNA-binding region 330..348 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 40..123 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 125..213 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 215..300 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 323..401 DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 403..655 Entrez Domain: POLY-ALA. 13..16 Entrez Domain: POLY-ALA. 27..38 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 47..52 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 85..92 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 134..139 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 172..179 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 227..232 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 265..272 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 330..335 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 368..375 Entrez Domain: POLY-GLN. 514..521 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 47..117 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 134..204 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 227..297 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 330..400 PFAM PABP: Poly-adenylate binding protein, un 575..646 PRODOM PD186691: 40..83 PRODOM PD060589: PABP(4) PAB1(2) 85..129 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 135..169 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 171..218 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 228..258 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 264..312 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 331..361 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 366..412 PRODOM PD066173: Q39953(2) 414..510 PRODOM PD029581: PAB5_ARATH 512..591 PRODOM PD002964: PABP(4) PAB1(2) 593..647 PROSITE RNP_1: Eukaryotic putative RNA-binding r 172..179 PROSITE RNP_1: Eukaryotic putative RNA-binding r 368..375 __________________ Plus Strand HSPs: Score = 212 (74.6 bits), Expect = 2.9e-15, P = 2.9e-15 Identities = 52/110 (47%), Positives = 68/110 (61%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMR-PVAITPSVAPRMPLY--PPGAPGLGQQ--FLYG 182 KPLYVALAQRKEER+A LQ+ F+Q+R P ++P +P + PPG P G G Sbjct: 396 KPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIG 455 Query: 183 QGPPAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQRPVG 329 ++P Q G+GYQ Q +PGM PG GP P+F +P + +Q Q G R VG Sbjct: 456 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPR-VG 505
>gi|7239504|gb|AAF43230.1|AC012654_14 (AC012654) Identical to the polyadenylate-binding protein 5 (PAB5) from Arabidopsis thaliana gb|M97657 Length = 668 Frame 3 hits (HSPs): _________ __________________________________________________ Database sequence: | | | | | | 668 0 150 300 450 600 Plus Strand HSPs: Score = 212 (74.6 bits), Expect = 2.9e-15, P = 2.9e-15 Identities = 52/110 (47%), Positives = 68/110 (61%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMR-PVAITPSVAPRMPLY--PPGAPGLGQQ--FLYG 182 KPLYVALAQRKEER+A LQ+ F+Q+R P ++P +P + PPG P G G Sbjct: 396 KPLYVALAQRKEERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIG 455 Query: 183 QGPPAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQRPVG 329 ++P Q G+GYQ Q +PGM PG GP P+F +P + +Q Q G R VG Sbjct: 456 HNGQGLVPSQPMGYGYQVQFMPGMRPGAGP-PNFMMPFPLQRQTQPGPR-VG 505
>gi|12643628|sp|O64380|PAB3_ARATH POLYADENYLATE-BINDING PROTEIN 3 (POLY(A) BINDING PROTEIN 3) (PABP 3) >gi|2505869|emb|CAA72907.1| (Y12227) polyA binding protein PAB3 [Arabidopsis thaliana] Length = 660 Frame 3 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | | | 660 0 150 300 450 600 Plus Strand HSPs: Score = 205 (72.2 bits), Expect = 1.6e-14, P = 1.6e-14 Identities = 53/101 (52%), Positives = 66/101 (65%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191 KPLY+ALAQRKE+RRA LQA FSQ+R A P +PPG P G Q +Y GQ Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR--APGPMSGFH---HPPGGPMPGPPQHMYVGQNG 454 Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQR 320 +M+P Q G+G+Q Q +PGM PG GP +F VP + +Q Q G R Sbjct: 455 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPR 499 Score = 180 (63.4 bits), Expect = 7.9e-12, P = 7.9e-12 Identities = 52/115 (45%), Positives = 63/115 (54%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191 KPLY+ALAQRKE+RRA LQA FSQ+R P +PPG P G Q +Y GQ Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR----APGPMSGFH-HPPGGPMPGPPQHMYVGQNG 454 Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTP 362 +M+P Q G+G+Q Q +PGM PG GP +F VP P R T P Sbjct: 455 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPY-------------PLQRQPQTGP 498
>gi|9930616|gb|AAG02117.1|AF293840_1 (AF293840) poly(A) binding protein [Arabidopsis thaliana] Length = 660 Frame 3 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | | | 660 0 150 300 450 600 Plus Strand HSPs: Score = 205 (72.2 bits), Expect = 1.6e-14, P = 1.6e-14 Identities = 53/101 (52%), Positives = 66/101 (65%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191 KPLY+ALAQRKE+RRA LQA FSQ+R A P +PPG P G Q +Y GQ Sbjct: 400 KPLYIALAQRKEDRRAHLQALFSQIR--APGPMSGFH---HPPGGPMPGPPQHMYVGQNG 454 Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQR 320 +M+P Q G+G+Q Q +PGM PG GP +F VP + +Q Q G R Sbjct: 455 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYSLQRQPQTGPR 499
>gi|7439965|pir||T00768 polyadenylate-binding protein T22J18.7 - Arabidopsis thaliana >gi|3287682|gb|AAC25510.1|AAC25510 (AC003979) Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from A. thaliana. [Arabidopsis thaliana] Length = 655 Frame 3 hits (HSPs): ___ ________ __________________________________________________ Database sequence: | | | | | | 655 0 150 300 450 600 Plus Strand HSPs: Score = 172 (60.5 bits), Expect = 5.6e-11, P = 5.6e-11 Identities = 47/101 (46%), Positives = 60/101 (59%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQ-QFLY-GQGP 191 KPLY+ALAQRKE+RRA LQ + P +PPG P G Q +Y GQ Sbjct: 400 KPLYIALAQRKEDRRAHLQIR---------APGPMSGFH-HPPGGPMPGPPQHMYVGQNG 449 Query: 192 PAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVP--MVQQGQQGQR 320 +M+P Q G+G+Q Q +PGM PG GP +F VP + +Q Q G R Sbjct: 450 ASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPYPLQRQPQTGPR 494 Score = 99 (34.8 bits), Expect = 0.00056, Sum P(2) = 0.00056 Identities = 30/75 (40%), Positives = 38/75 (50%), Frame = +3 Query: 138 YPPGAPGLGQ-QFLY-GQGPPAMMPPQA-GFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQ 308 +PPG P G Q +Y GQ +M+P Q G+G+Q Q +PGM PG GP +F VP Sbjct: 430 HPPGGPMPGPPQHMYVGQNGASMVPSQPIGYGFQPQFMPGMRPGSGP-GNFIVPY----- 483 Query: 309 QGQRPVGRPRNRSCATTP 362 P R T P Sbjct: 484 --------PLQRQPQTGP 493 Score = 57 (20.1 bits), Expect = 0.00056, Sum P(2) = 0.00056 Identities = 12/24 (50%), Positives = 15/24 (62%), Frame = +3 Query: 24 LYVALAQRKEERRARLQAQFSQMR 95 LYV AQ+K ER L+ +F Q R Sbjct: 299 LYVGRAQKKSEREEELRRKFEQER 322
>gi|1616770|gb|AAB16848.1| (U70731) putative poly(A)-binding protein FabM [Aspergillus nidulans] Length = 705 Frame 3 hits (HSPs): ________ Frame 1 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | | | 705 0 150 300 450 600 Plus Strand HSPs: Score = 124 (43.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08 Identities = 42/105 (40%), Positives = 51/105 (48%), Frame = +3 Query: 15 GKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAP----RMPLYPPGAPGLGQQ-FLY 179 GKPLYVALAQRK+ RR++L+A + + A + + P G GQQ F+ Sbjct: 444 GKPLYVALAQRKDVRRSQLEASIQARNNIRQQQAAAAAGMGQAYMAPAVFYGPGQQGFIP 503 Query: 180 GQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVG 329 G M PPQ G PG PG P P GQQG R VG Sbjct: 504 GAQRGGMFPPQPGMMMGMPGRPGQYPG--PFP---------GQQGGRGVG 542 Score = 50 (17.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08 Identities = 16/42 (38%), Positives = 21/42 (50%), Frame = +1 Query: 322 QWAARGTGPVQQ--PQ-QPMPM--MQQQMLPRGLSIVTLLGR 432 Q RG GP QQ P Q +PM MQ +P G+ + G+ Sbjct: 535 QQGGRGVGPNQQIPPNFQGLPMGAMQGPGIPNGMGYPMVQGQ 576
>gi|3123239|sp|P31209|PABP_SCHPO POLYADENYLATE-BINDING PROTEIN (POLY(A) BINDING PROTEIN) (PABP) >gi|7492311|pir||T38950 polyadenylate-binding protein - fission yeast (Schizosaccharomyces pombe) >gi|2104439|emb|CAB08762.1| (Z95396) polyadenylate-binding protein [Schizosaccharomyces pombe] Length = 653 Frame 3 hits (HSPs): ____ ____________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | 653 0 150 300 450 600 __________________ Annotated Domains: BLOCKS BL00030A: Eukaryotic RNA-binding region 82..100 BLOCKS BL00030B: Eukaryotic RNA-binding region 208..217 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 82..87 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 121..128 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 170..175 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 208..215 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 263..268 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 301..308 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 366..371 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 404..411 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 82..153 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 170..240 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 263..333 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 366..436 PFAM PABP: Poly-adenylate binding protein, un 570..641 PRODOM PD059909: PABP_SCHPO 1..81 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 83..119 PRODOM PD060589: PABP(4) PAB1(2) 121..165 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 171..201 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 208..249 PRODOM PD186873: PABP(2) O96606(1) Q92227(1) 257..298 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 301..349 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 367..397 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 403..448 PRODOM PD066162: PABP_SCHPO 450..583 PRODOM PD002964: PABP(4) PAB1(2) 585..641 PROSITE RNP_1: Eukaryotic putative RNA-binding r 208..215 PROSITE RNP_1: Eukaryotic putative RNA-binding r 301..308 PROSITE RNP_1: Eukaryotic putative RNA-binding r 404..411 __________________ Plus Strand HSPs: Score = 142 (50.0 bits), Expect = 9.2e-08, P = 9.2e-08 Identities = 52/132 (39%), Positives = 65/132 (49%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR--MPLYPPGAPGLGQQFLYGQ 185 AGKPLYVALAQRKE RR++L+AQ + VA +P GA G +YG Sbjct: 430 AGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATG---PLIYGP 486 Query: 186 G----PPAM----MPPQAGFGYQQQLVPGM---XPGGGPMPSFFVPMVQQGQQGQRPV-- 326 G P A+ MP G + PGM P GGP P + P G + PV Sbjct: 487 GGYPIPAAVNGRGMPMVPGHNGPMPMYPGMPTQFPAGGPAPGY--P----GMNARGPVPA 540 Query: 327 -GRPRNRSCATTPAANANDAAA 389 GRP + P+A +A A Sbjct: 541 QGRPMMMP-GSVPSAGPAEAEA 561 Score = 70 (24.6 bits), Expect = 0.29, Sum P(2) = 0.26 Identities = 13/29 (44%), Positives = 19/29 (65%), Frame = +3 Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQMR 95 + GK LYV AQ+K ER L+ ++ QM+ Sbjct: 326 YKGKKLYVGRAQKKHEREEELRKRYEQMK 354 Score = 67 (23.6 bits), Expect = 0.29, Sum P(2) = 0.26 Identities = 19/58 (32%), Positives = 27/58 (46%), Frame = +3 Query: 123 PRMPL-YPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMV 296 P MP +P G P G + +GP +P Q + ++PG P GP + VP V Sbjct: 514 PGMPTQFPAGGPAPGYPGMNARGP---VPAQG----RPMMMPGSVPSAGPAEAEAVPAV 565
>gi|538583|pir||DNZPPA polyadenylate-binding protein - fission yeast (Schizosaccharomyces pombe) (fragment) >gi|173421|gb|AAA35320.1| (M64603) poly(A)-binding protein [Schizosaccharomyces pombe] Length = 628 Frame 3 hits (HSPs): ___ ___________ Annotated Domains: __ ______ ______ ______ _______ __________________________________________________ Database sequence: | | | | | | 628 0 150 300 450 600 __________________ Annotated Domains: Entrez domain: ribonucleoprotein repeat homolog 67..134 Entrez region: RNA-binding RNP2 motif 68..73 Entrez region: RNA-binding RNP1 motif 107..114 Entrez domain: ribonucleoprotein repeat homolog 155..221 Entrez region: RNA-binding RNP2 motif 156..161 Entrez region: RNA-binding RNP1 motif 194..201 Entrez domain: ribonucleoprotein repeat homolog 248..314 Entrez region: RNA-binding RNP2 motif 249..254 Entrez region: RNA-binding RNP1 motif 287..294 Entrez domain: ribonucleoprotein repeat homolog 351..417 Entrez region: RNA-binding RNP2 motif 352..357 Entrez region: RNA-binding RNP1 motif 390..397 PROSITE G_BETA_REPEATS: Beta-transducin family T 8..22 PROSITE RNP_1: Eukaryotic putative RNA-binding r 194..201 PROSITE RNP_1: Eukaryotic putative RNA-binding r 287..294 PROSITE RNP_1: Eukaryotic putative RNA-binding r 390..397 __________________ Plus Strand HSPs: Score = 132 (46.5 bits), Expect = 1.0e-06, P = 1.0e-06 Identities = 50/132 (37%), Positives = 63/132 (47%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPR--MPLYPPGAPGLGQQFLYGQ 185 AGKPLYVALAQRKE RR++L+AQ + VA +P GA G +YG Sbjct: 416 AGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATG---PLIYGP 472 Query: 186 GPPAMMPPQAGFGYQQQLVPG------MXPGGGPMPSFF-VPMVQQGQQGQRPV---GRP 335 G + P A G +VPG M PG P+ S V G + PV GRP Sbjct: 473 GGYPI--PAAVNGRGMPMVPGHNGPMPMYPGMPPLSSLLEVRPGYPGMNARGPVPAQGRP 530 Query: 336 RNRSCATTPAANANDAAA 389 + P+A +A A Sbjct: 531 MMMP-GSVPSAGPAEAEA 547 Score = 68 (23.9 bits), Expect = 0.46, Sum P(2) = 0.37 Identities = 13/29 (44%), Positives = 18/29 (62%), Frame = +3 Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQMR 95 + GK LYV AQ+K ER L+ + QM+ Sbjct: 312 YKGKKLYVGRAQKKHEREEELRKAYEQMK 340 Score = 67 (23.6 bits), Expect = 0.46, Sum P(2) = 0.37 Identities = 22/68 (32%), Positives = 29/68 (42%), Frame = +3 Query: 93 RPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMP--PQAGFGYQQQLVPGMXPGGG 266 R + + P MP+YP G P L G P M P G + ++PG P G Sbjct: 484 RGMPMVPGHNGPMPMYP-GMPPLSSLLEVRPGYPGMNARGPVPAQG-RPMMMPGSVPSAG 541 Query: 267 PMPSFFVPMV 296 P + VP V Sbjct: 542 PAEAEAVPAV 551
>gi|7439963|pir||T07933 polyadenylate-binding protein RB47 precursor, chloroplast - Chlamydomonas reinhardtii >gi|2935338|gb|AAC39368.1| (AF043297) poly(A) binding protein RB47 [Chlamydomonas reinhardtii] Length = 623 Frame 3 hits (HSPs): __ ___ _____________ __________________________________________________ Database sequence: | | | | | | 623 0 150 300 450 600 Plus Strand HSPs: Score = 131 (46.1 bits), Expect = 1.3e-06, P = 1.3e-06 Identities = 51/141 (36%), Positives = 68/141 (48%), Frame = +3 Query: 15 GKPLYVALAQRKEERRA-----RLQAQF---SQMRPVAITPSVAP---RMPLYPPGAPGL 161 GKPLYVALAQRK+ RRA +QA+ + RP ++P MP + PG G+ Sbjct: 375 GKPLYVALAQRKDVRRATQLEANMQARMGMGAMSRPPNPMAGMSPYPGAMPFFAPGPGGM 434 Query: 162 GQ-QFLYGQGPPAMMPPQA----GFGYQQQLVPGMXPGGGPMPSFFVPMVQ-QGQQGQRP 323 G P MMPP+ G G + ++P GG PM PM +G+ G+ P Sbjct: 435 AAGPRAPGMMYPPMMPPRGMPGPGRGPRGPMMPPQMMGG-PMMG--PPMGPGRGRGGRGP 491 Query: 324 VGRPRNRSCATTPAANANDAAADAS 398 GR + R PA AA A+ Sbjct: 492 SGRGQGRG-NNAPAQQPKPAAEPAA 515 Score = 87 (30.6 bits), Expect = 0.044, Sum P(2) = 0.043 Identities = 36/98 (36%), Positives = 42/98 (42%), Frame = +3 Query: 114 SVAPRMP--LYPPGAPGLGQQFLYGQGPPA-MMPPQAGFGYQQQLVPGMXPG---GGPMP 275 + PR P +YPP P G G+GP MMPPQ G + P M PG GG P Sbjct: 435 AAGPRAPGMMYPPMMPPRGMPGP-GRGPRGPMMPPQMMGG--PMMGPPMGPGRGRGGRGP 491 Query: 276 SFFVPMVQQGQQGQ--RPVGRPRNRSCATTPAANANDAAAD 392 S Q +P P A PAA A AAA+ Sbjct: 492 SGRGQGRGNNAPAQQPKPAAEPAAAPAAAAPAAAAPAAAAE 532 Score = 54 (19.0 bits), Expect = 0.044, Sum P(2) = 0.043 Identities = 11/28 (39%), Positives = 17/28 (60%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMR 95 +GK LY AQ+K ER A L+ + + + Sbjct: 269 SGKTLYAGRAQKKTEREAMLRQKAEESK 296 Score = 40 (14.1 bits), Expect = 1.1, Sum P(2) = 0.68 Identities = 10/22 (45%), Positives = 15/22 (68%), Frame = +3 Query: 6 RFAGKPLYVALAQRKEER-RAR 68 + GK +YVA Q++ +R RAR Sbjct: 178 KIEGKIVYVAPFQKRADRPRAR 199
>gi|7509318|pir||T26427 hypothetical protein Y106G6H.2 - Caenorhabditis elegans >gi|3880681|emb|CAA21572.1| (AL032631) predicted using Genefinder~contains similarity to Pfam domain: PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)), Score=334.3, E-value=4.3e-97, N=4; PF00658 (Poly-adenylate binding protein, unique domain.), Score=104.3, E-val> Length = 646 Frame 3 hits (HSPs): ____________ __________________________________________________ Database sequence: | | | | | | 646 0 150 300 450 600 Plus Strand HSPs: Score = 128 (45.1 bits), Expect = 2.9e-06, P = 2.9e-06 Identities = 52/148 (35%), Positives = 67/148 (45%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVA+AQRKE+RRA+L +Q+ Q P +Y P PG G Y P Sbjct: 385 KPLYVAIAQRKEDRRAQLASQYMQRLASMRMHGNVPGAAMYNPTQPGPGY---YVANP-- 439 Query: 198 MMPPQAGFGYQQQLVPGMXPGG--GPMPSFFVP---MVQQGQQG-QRPVGRPRNRSCATT 359 M Q F QQ+V PGG G + V M+ QG Q +GRP+N+ Sbjct: 440 -MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGGPR 495 Query: 360 -PAANANDAAADASKGTFYRYPPWPQHARFPTSNL 461 P N A G + PP Q+ N+ Sbjct: 496 GPPQQYNQVAQG---GVRMQGPPRTQNPGVQQQNV 527
>gi|4335716|gb|AAD17394.1| (AC006248) putative poly(A)-binding protein [Arabidopsis thaliana] Length = 132 Frame 3 hits (HSPs): _____________ ___________ __________________________________________________ Database sequence: | | | | 132 0 50 100 Plus Strand HSPs: Score = 94 (33.1 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06 Identities = 16/28 (57%), Positives = 21/28 (75%), Frame = +3 Query: 99 VAITPSVAPRMPLYPPGAPGLGQQFLYG 182 VA+ PSV PRMP+YP G+PG+ + YG Sbjct: 105 VAMPPSVGPRMPIYPLGSPGIRKSMFYG 132 Score = 42 (14.8 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06 Identities = 11/33 (33%), Positives = 17/33 (51%), Frame = +3 Query: 9 FAGKPLYVALAQRKEERRARLQAQFSQ-MRPVA 104 F K V AQ+K ER L+ + Q ++ +A Sbjct: 38 FDDKQWVVDRAQKKSEREMELKVPYEQSLKEIA 70
>gi|780291|gb|AAA65224.1| (U24123) polyadenylate-binding protein [Caenorhabditis elegans] Length = 646 Frame 3 hits (HSPs): ____________ __________________________________________________ Database sequence: | | | | | | 646 0 150 300 450 600 Plus Strand HSPs: Score = 123 (43.3 bits), Expect = 9.9e-06, P = 9.9e-06 Identities = 51/148 (34%), Positives = 66/148 (44%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPA 197 KPLYVA+ QRKE+RRA+L +Q+ Q P +Y P PG G Y P Sbjct: 385 KPLYVAIGQRKEDRRAQLASQYMQRVASMRMHGNVPGAAMYNPTQPGPGY---YVANP-- 439 Query: 198 MMPPQAGFGYQQQLVPGMXPGG--GPMPSFFVP---MVQQGQQG-QRPVGRPRNRSCATT 359 M Q F QQ+V PGG G + V M+ QG Q +GRP+N+ Sbjct: 440 -MQQQRNFAGGQQMV---RPGGRWGMQNQYPVQNQYMMAQGPGVYQNRMGRPQNQQGGPR 495 Query: 360 -PAANANDAAADASKGTFYRYPPWPQHARFPTSNL 461 P N A G + PP Q+ N+ Sbjct: 496 GPPQQYNQVAQG---GVRMQGPPRTQNPGVQQQNV 527
>gi|12655478|emb|CAC27591.1| (AJ406952) keratin associated protein 16.1 [Homo sapiens] Length = 105 Frame -1 hits (HSPs): ______________________________ Frame -3 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | | | 105 0 20 40 60 80 100 Minus Strand HSPs: Score = 77 (27.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05 Identities = 20/57 (35%), Positives = 21/57 (36%), Frame = -1 Query: 238 SCCW*PNPACGGIMAGGPCPYKNCCPRP-GAPGG*RGIRGATEGVIATGLICENCAC 71 SCC CGG GG C +CC G GG G G G G C C Sbjct: 34 SCCGCGGSGCGGSGCGGSCCGSSCCGSGCGGCGGCGGCGGGCCGSSCCGSSCCGSGC 90 Score = 64 (22.5 bits), Expect = 0.18, Sum P(2) = 0.16 Identities = 20/53 (37%), Positives = 22/53 (41%), Frame = -1 Query: 322 GRC-PCWPC*TMGTKKLGMGPPPGXIPGTSCCW*PNPACGGIMA-GGPCPYKNCC 164 G C C C G G G G G+SCC CGG GG C +CC Sbjct: 30 GCCGSCCGCGGSGCGGSGCG---GSCCGSSCCGSGCGGCGGCGGCGGGCCGSSCC 81 Score = 48 (16.9 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05 Identities = 8/13 (61%), Positives = 8/13 (61%), Frame = -3 Query: 389 CCCIIGIGCWGCC 351 CCC GC GCC Sbjct: 22 CCC--QPGCCGCC 32
>gi|64970|emb|CAA40721.1| (X57483) polyA binding protein [Xenopus laevis] Length = 633 Frame 3 hits (HSPs): ____________ __________________________________________________ Database sequence: | | | | | | 633 0 150 300 450 600 Plus Strand HSPs: Score = 119 (41.9 bits), Expect = 2.6e-05, P = 2.6e-05 Identities = 50/144 (34%), Positives = 60/144 (41%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAI-TPSVAPRMPLYPPGA-------PGLG 164 A KPLYVALAQRKEER+A L Q+ Q M V + P + P P PP + P Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQN 416 Query: 165 QQFLYGQGPPAMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326 + Y G A + P Q + Q +PG P P F M Q R + Sbjct: 417 RAAYYPPGQIAQLSPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVM 476 Query: 327 GRPR--NRSCATTPAANANDAAADAS 398 R N S T AAA AS Sbjct: 477 SAQRVANTSTQTMGPRPTTAAAAAAS 502
>gi|7484631|pir||T12420 polyadenylate-binding protein - common ice plant (fragment) >gi|2213871|gb|AAB61594.1| (AF003126) poly(A)-binding protein [Mesembryanthemum crystallinum] Length = 176 Frame 1 hits (HSPs): ______________ __________________________________________________ Database sequence: | | | | | 176 0 50 100 150 Plus Strand HSPs: Score = 114 (40.1 bits), Expect = 3.9e-05, P = 3.9e-05 Identities = 27/47 (57%), Positives = 31/47 (65%), Frame = +1 Query: 337 GTGPVQQPQQ-PMPMMQQQMLPRGLSIVTLLGRNMQDFPLPICTGGML 477 G PVQQ QQ P+PMMQQQM+PRG R + D PLP TGG+L Sbjct: 7 GGAPVQQSQQQPIPMMQQQMMPRGRYRYPP-ARGLPDAPLPGVTGGVL 53
>gi|1352709|sp|P20965|PABP_XENLA POLYADENYLATE-BINDING PROTEIN (POLY(A) BINDING PROTEIN) (PABP) >gi|538582|pir||DNXLPA polyadenylate-binding protein - African clawed frog >gi|623598|gb|AAA60936.1| (M27072) poly(A)-binding protein [Xenopus laevis] Length = 633 Frame 3 hits (HSPs): ____________ Annotated Domains: ______________________ ___________________________ __________________________________________________ Database sequence: | | | | | | 633 0 150 300 450 600 __________________ Annotated Domains: BLOCKS BL00030A: Eukaryotic RNA-binding region 13..31 BLOCKS BL00030B: Eukaryotic RNA-binding region 333..342 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 13..18 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 52..59 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 101..106 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 138..145 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 193..198 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 231..238 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 296..301 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 333..340 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 13..84 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 101..170 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 193..263 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 296..365 PFAM PABP: Poly-adenylate binding protein, un 541..612 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 14..50 PRODOM PD060589: PABP(4) PAB1(2) 52..96 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 102..132 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 137..186 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 194..228 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 230..278 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 297..330 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 332..381 PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 383..456 PRODOM PD012528: PAB1(2) PABP(1) Q62029(1) 458..525 PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 527..553 PRODOM PD002964: PABP(4) PAB1(2) 555..622 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 253..260 PROSITE RNP_1: Eukaryotic putative RNA-binding r 138..145 PROSITE RNP_1: Eukaryotic putative RNA-binding r 231..238 PROSITE RNP_1: Eukaryotic putative RNA-binding r 333..340 __________________ Plus Strand HSPs: Score = 118 (41.5 bits), Expect = 0.00010, P = 0.00010 Identities = 50/144 (34%), Positives = 60/144 (41%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAI-TPSVAPRMPLYPPGA-------PGLG 164 A KPLYVALAQRKEER+A L Q+ Q M V + P + P P PP + P Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPNPVINPYQP--PPSSYFMAAIPPAQN 416 Query: 165 QQFLYGQGPPAMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326 + Y G A + P Q + Q +PG P P F M Q R + Sbjct: 417 RAAYYPPGQIAQLRPSPRWTAQGARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVM 476 Query: 327 GRPR--NRSCATTPAANANDAAADAS 398 R N S T AAA AS Sbjct: 477 SAQRVANTSTQTMGPRPTTAAAAAAS 502
>gi|172092|gb|AAA34838.1| (M12780) polyadenylate-binding protein [Saccharomyces cerevisiae] Length = 577 Frame 3 hits (HSPs): __________ __________________________________________________ Database sequence: | | | | | 577 0 150 300 450 Plus Strand HSPs: Score = 114 (40.1 bits), Expect = 0.00063, P = 0.00063 Identities = 41/110 (37%), Positives = 53/110 (48%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGP 191 AGKPLYVA+AQRK+ RR++L Q + + A R G PG QF+ P Sbjct: 388 AGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAARAAA-AAGMPG---QFM----P 439 Query: 192 P---AMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQ-QGQRPVGR-PRN 341 P +MPP+ G + M P GG + P + G G P G PRN Sbjct: 440 PMFYGVMPPR-GVPFNGPNPQQMNPMGGMPKNGMPPQFRNGPVYGVPPQGGFPRN 493
>gi|4504715 ref|NP_003810.1| poly(A)-binding protein, cytoplasmic 4 (inducible form); inducible poly(A)-binding protein [Homo sapiens] >gi|11427851 ref|XP_002105.1| poly(A)-binding protein, cytoplasmic 4 (inducible form) [Homo sapiens] >gi|12229875|sp|Q13310|PAB4_HUMAN POLYADENYLATE-BINDING PROTEIN 4 (POLY(A) BINDING PROTEIN 4) (PABP 4) (INDUCIBLE POLY(A)-BINDING PROTEIN) (IPABP) (ACTIVATED-PLATELET PROTEIN-1) (APP-1) >gi|1163177|gb|AAC50350.1| (U33818) inducible poly(A)-binding protein [Homo sapiens] >gi|2801403|gb|AAB97309.1| (U75686) polyadenylate binding protein [Homo sapiens] >gi|1585757|prf||2201474A inducible poly(A)-binding protein [Homo sapiens] Length = 644 Frame 3 hits (HSPs): ___________ __________________________________________________ Database sequence: | | | | | | 644 0 150 300 450 600 Plus Strand HSPs: Score = 113 (39.8 bits), Expect = 0.0010, P = 0.0010 Identities = 49/134 (36%), Positives = 62/134 (46%), Frame = +3 Query: 6 RFAG-KPLYVALAQRKEERRARLQAQFSQ-MRPVAITPSVAPRMPLYPPGAPGLGQQFL- 176 R G KPLYVALAQRKEER+A L Q+ Q + + P+ A + + P A G + Sbjct: 356 RIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPANAI-LNQFQPAAGGYFVPAVP 414 Query: 177 YGQG-PPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPVGR---PRNR 344 QG PP P Q Q + P GG P +P + Q G RP R P Sbjct: 415 QAQGRPPYYTPNQLA---QMRPNPRWQQGGRPQGFQGMPSAIR-QSGPRPTLRHLAPTGS 470 Query: 345 SCATTPAANANDAAADASKG 404 C A + A A A +G Sbjct: 471 ECPDRLAMDFGGAGA-AQQG 489
>gi|206716|gb|AAA42066.1| (M64791) salivary proline-rich protein [Rattus norvegicus] Length = 202 Frame 3 hits (HSPs): _____________________ Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | || 202 0 50 100 150 200 Plus Strand HSPs: Score = 98 (34.5 bits), Expect = 0.0012, Sum P(2) = 0.0012 Identities = 32/90 (35%), Positives = 41/90 (45%), Frame = +3 Query: 75 AQFSQMRPVAITPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGM 251 AQ +++ + TP+ P P +PP P G QQ QG P PPQ G + Q G Sbjct: 16 AQEPELQSLDQTPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GP 69 Query: 252 XPGGGPMPSFFVPMVQQGQQGQRPVGRPRNR 344 P GGP P QQG P G P+ + Sbjct: 70 TPPGGPQQK---PPQPGNQQGPPPPGGPQQK 97 Score = 39 (13.7 bits), Expect = 0.0012, Sum P(2) = 0.0012 Identities = 10/21 (47%), Positives = 12/21 (57%), Frame = +1 Query: 343 GPVQQPQQPMPMMQQQMLPRG 405 GP Q+P QP QQ P+G Sbjct: 169 GPQQRPPQPG---NQQSPPQG 186
>gi|4508017 ref|NP_003448.1| zinc finger protein 207 [Homo sapiens] >gi|11426532 ref|XP_008462.1| zinc finger protein 207 [Homo sapiens] >gi|6137311|sp|O43670|Z207_HUMAN ZINC FINGER PROTEIN 207 >gi|2895870|gb|AAC78561.1| (AF046001) zinc finger transcription factor [Homo sapiens] Length = 478 Frame 3 hits (HSPs): __________ ___________ __________________________________________________ Database sequence: | | | | | 478 0 150 300 450 Plus Strand HSPs: Score = 111 (39.1 bits), Expect = 0.0015, P = 0.0015 Identities = 41/97 (42%), Positives = 50/97 (51%), Frame = +3 Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218 EERRA+L + Q + RP I P V P + PP PG+ QQ G PP MPP Sbjct: 373 EERRAQLPKYQRNLPRPGQAPIGNPPVGPIGGMMPP-QPGIPQQ--QGMRPP--MPPHGQ 427 Query: 219 FGYQQQLVPGMXPGGGPMPSFFVPMVQ--QGQQGQRPVG-RP 335 +G Q +PG PG P PMV QG + P+G RP Sbjct: 428 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRP 469 Score = 98 (34.5 bits), Expect = 0.096, P = 0.091 Identities = 33/87 (37%), Positives = 42/87 (48%), Frame = +3 Query: 105 ITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPG-GGPMPSF 281 + P V P MP PP PG+ + G MMPP G L+PGM PG P+P Sbjct: 163 LMPGVPPLMPGMPPVMPGMPPGMMPMGG---MMPPGPGI---PPLMPGMPPGMPPPVPRP 216 Query: 282 FVPMVQQGQQGQRP--VGRPRNRSCATTPA 365 +P + Q Q P + RP + AT PA Sbjct: 217 GIPPMTQAQAVSAPGILNRPPAPT-ATVPA 245
>gi|6321013 ref|NP_011092.1| Poly(A) binding protein, cytoplasmic and nuclear; Pab1p [Saccharomyces cerevisiae] >gi|417441|sp|P04147|PABP_YEAST POLYADENYLATE-BINDING PROTEIN, CYTOPLASMIC AND NUCLEAR (PABP) (ARS CONSENSUS BINDING PROTEIN ACBP-67) (POLYADENYLATE TAIL-BINDING PROTEIN) >gi|1070599|pir||DNBYPA polyadenylate-binding protein - yeast (Saccharomyces cerevisiae) >gi|171967|gb|AAA34787.1| (M13371) poly (A)-binding protein [Saccharomyces cerevisiae] >gi|218386|dbj|BAA00017.1| (D00023) polyadenylate-binding protein [Saccharomyces cerevisiae] >gi|603406|gb|AAB64692.1| (U18922) Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae] Length = 577 Frame 3 hits (HSPs): __________ __________________________________________________ Database sequence: | | | | | 577 0 150 300 450 Plus Strand HSPs: Score = 111 (39.1 bits), Expect = 0.0020, P = 0.0020 Identities = 44/110 (40%), Positives = 56/110 (50%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQF---SQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYG 182 AGKPLYVA+AQRK+ RR++L Q +QMR T + A G PG QF+ Sbjct: 388 AGKPLYVAIAQRKDVRRSQLAQQIQARNQMRYQQATAAAAAAAA----GMPG---QFM-- 438 Query: 183 QGPP---AMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQ-QGQRPVGR-PRN 341 PP +MPP+ G + M P GG + P + G G P G PRN Sbjct: 439 --PPMFYGVMPPR-GVPFNGPNPQQMNPMGGMPKNGMPPQFRNGPVYGVPPQGGFPRN 493
>gi|7499382|pir||T21096 hypothetical protein F18H3.3b - Caenorhabditis elegans >gi|3876087|emb|CAA90446.1| (Z50110) contains similarity to Pfam domain: PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)), Score=332.7, E-value=1.4e-96, N=4~cDNA EST EMBL:Z14771 comes from this gene~cDNA EST yk42f11.5 comes from this gene~cDNA EST yk42f11.3 comes> Length = 566 Frame 3 hits (HSPs): ___________ __________________________________________________ Database sequence: | | | | | 566 0 150 300 450 Plus Strand HSPs: Score = 110 (38.7 bits), Expect = 0.0027, P = 0.0027 Identities = 47/123 (38%), Positives = 57/123 (46%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMP----LYPPGAPG-LGQQFLYG 182 KPLYVALAQRKE+RRA+L +Q+ Q A +P LY PG G + Sbjct: 411 KPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNA 470 Query: 183 QGPPAMMPPQAGFGYQQQLVPGMXPGGGPM----PSFFVPMVQQGQQGQRPV----GRPR 338 QG P P A Q + PG M P F V QQG+ P+ GRP+ Sbjct: 471 QGRPGFQPQSA----QIRGPPGQRVFQNQMFMQYP-FNQRQVYPQQQGRPPMRTNDGRPQ 525 Query: 339 NRSCATTPA 365 A PA Sbjct: 526 Y-GMAPRPA 533
>gi|7499381|pir||T21095 hypothetical protein F18H3.3a - Caenorhabditis elegans >gi|3876085|emb|CAA90444.1| (Z50110) contains similarity to Pfam domain: PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)), Score=332.7, E-value=1.4e-96, N=4; PF00658 (Poly-adenylate binding protein, unique domain.), Score=108.5, E-value=4.2e-29, N=1~cDNA EST yk11> Length = 692 Frame 3 hits (HSPs): __________ __________________________________________________ Database sequence: | | | | | | 692 0 150 300 450 600 Plus Strand HSPs: Score = 110 (38.7 bits), Expect = 0.0035, P = 0.0035 Identities = 47/123 (38%), Positives = 57/123 (46%), Frame = +3 Query: 18 KPLYVALAQRKEERRARLQAQFSQMRPVAITPSVAPRMP----LYPPGAPG-LGQQFLYG 182 KPLYVALAQRKE+RRA+L +Q+ Q A +P LY PG G + Sbjct: 411 KPLYVALAQRKEDRRAQLASQYMQRLATLRMGQQASGVPAMTQLYQPGQQGYFVPNPMNA 470 Query: 183 QGPPAMMPPQAGFGYQQQLVPGMXPGGGPM----PSFFVPMVQQGQQGQRPV----GRPR 338 QG P P A Q + PG M P F V QQG+ P+ GRP+ Sbjct: 471 QGRPGFQPQSA----QIRGPPGQRVFQNQMFMQYP-FNQRQVYPQQQGRPPMRTNDGRPQ 525 Query: 339 NRSCATTPA 365 A PA Sbjct: 526 Y-GMAPRPA 533
>gi|6756051 ref|NP_035881.1| zinc finger protein 207 [Mus musculus] >gi|7513880|pir||JE0367 zinc finger protein - mouse >gi|4153886|dbj|BAA37094.1| (AB013357) 49 kDa zinc finger protein [Mus musculus] Length = 460 Frame 3 hits (HSPs): ___________ __________________________________________________ Database sequence: | | | | | 460 0 150 300 450 Plus Strand HSPs: Score = 107 (37.7 bits), Expect = 0.0055, P = 0.0055 Identities = 41/97 (42%), Positives = 49/97 (50%), Frame = +3 Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218 EERRA+L + Q + RP I P V P + PP PGL QQ PP MPP Sbjct: 355 EERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPP-QPGLPQQ--QAMRPP--MPPHGQ 409 Query: 219 FGYQQQLVPGMXPGGGPMPSFFVPMVQ--QGQQGQRPVG-RP 335 +G Q +PG PG P PMV QG + P+G RP Sbjct: 410 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRP 451
>gi|7212794|dbj|BAA92375.1| (AB032196) zinc finger transcription factor ZNF207 [Mus musculus] Length = 495 Frame 3 hits (HSPs): __________ __________________________________________________ Database sequence: | | | | | 495 0 150 300 450 Plus Strand HSPs: Score = 107 (37.7 bits), Expect = 0.0061, P = 0.0061 Identities = 41/97 (42%), Positives = 49/97 (50%), Frame = +3 Query: 51 EERRARL-QAQFSQMRP--VAI-TPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAG 218 EERRA+L + Q + RP I P V P + PP PGL QQ PP MPP Sbjct: 390 EERRAQLPKYQRNLPRPGQTPIGNPPVGPIGGMMPP-QPGLPQQ--QAMRPP--MPPHGQ 444 Query: 219 FGYQQQLVPGMXPGGGPMPSFFVPMVQ--QGQQGQRPVG-RP 335 +G Q +PG PG P PMV QG + P+G RP Sbjct: 445 YGGHHQGMPGYLPGAMPPYGQGPPMVPPYQGGPPRPPMGMRP 486
>gi|112206|pir||A39066 proline-rich protein 4 - rat Length = 204 Frame 3 hits (HSPs): ___________________ Frame 1 hits (HSPs): _____ Annotated Domains: _______________________________________ __________________________________________________ Database sequence: | | | | | | 204 0 50 100 150 200 __________________ Annotated Domains: DOMO DM03894: PROLINE-RICHPROTEIN 1..159 __________________ Plus Strand HSPs: Score = 93 (32.7 bits), Expect = 0.0067, Sum P(2) = 0.0067 Identities = 30/79 (37%), Positives = 35/79 (44%), Frame = +3 Query: 108 TPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFF 284 TP+ P P +PP P G QQ QG P PPQ G + Q G P GGP Sbjct: 29 TPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GPTPPGGPQQK-- 80 Query: 285 VPMVQQGQQGQRPVGRPRNR 344 P QQG P G P+ + Sbjct: 81 -PPQPGNQQGPPPPGGPQQK 99 Score = 39 (13.7 bits), Expect = 0.0067, Sum P(2) = 0.0067 Identities = 10/21 (47%), Positives = 12/21 (57%), Frame = +1 Query: 343 GPVQQPQQPMPMMQQQMLPRG 405 GP Q+P QP QQ P+G Sbjct: 171 GPQQRPPQPG---NQQSPPQG 188
>gi|12188891|emb|CAC21554.1| (AJ298278) poly(A) binding protein [Rattus norvegicus] Length = 636 Frame 3 hits (HSPs): ______________ __________________________________________________ Database sequence: | | | | | | 636 0 150 300 450 600 Plus Strand HSPs: Score = 107 (37.7 bits), Expect = 0.0086, P = 0.0085 Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173 A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418 Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326 PP A + P Q + Q +PG P P F M Q R + Sbjct: 419 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 477 Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464 R + +T AAA A+ P + A R P +L+ Sbjct: 478 STQRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLN 525
>gi|4505575 ref|NP_002559.1| poly(A)-binding protein, cytoplasmic 1 [Homo sapiens] >gi|538581|pir||DNHUPA polyadenylate-binding protein - human >gi|35570|emb|CAA68428.1| (Y00345) polyA binding protein (AA 1-633) [Homo sapiens] Length = 633 Frame 3 hits (HSPs): ______________ __________________________________________________ Database sequence: | | | | | | 633 0 150 300 450 600 Plus Strand HSPs: Score = 106 (37.3 bits), Expect = 0.012, P = 0.012 Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173 A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q Sbjct: 356 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 415 Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326 PP A + P Q + Q +PG P P F M Q R + Sbjct: 416 RAAYYPPSQVAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 474 Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464 R + +T AAA A+ P + A R P +L+ Sbjct: 475 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 522
>gi|11424065 ref|XP_005098.1| poly(A)-binding protein, cytoplasmic 1 [Homo sapiens] Length = 633 Frame 3 hits (HSPs): ______________ __________________________________________________ Database sequence: | | | | | | 633 0 150 300 450 600 Plus Strand HSPs: Score = 106 (37.3 bits), Expect = 0.012, P = 0.012 Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173 A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q Sbjct: 356 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 415 Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326 PP A + P Q + Q +PG P P F M Q R + Sbjct: 416 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 474 Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464 R + +T AAA A+ P + A R P +L+ Sbjct: 475 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 522
>gi|6679197 ref|NP_032800.1| poly A binding protein, cytoplasmic 1; poly A binding protein 1 [Mus musculus] >gi|129535|sp|P29341|PAB1_MOUSE POLYADENYLATE-BINDING PROTEIN 1 (POLY(A)-BINDING PROTEIN 1) (PABP 1) (PABP1) >gi|2119041|pir||I48718 poly(A) binding protein - mouse >gi|53754|emb|CAA46522.1| (X65553) poly(A) binding protein [Mus musculus] Length = 636 Frame 3 hits (HSPs): ______________ __________________________________________________ Database sequence: | | | | | | 636 0 150 300 450 600 Plus Strand HSPs: Score = 106 (37.3 bits), Expect = 0.012, P = 0.012 Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173 A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418 Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326 PP A + P Q + Q +PG P P F M Q R + Sbjct: 419 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 477 Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464 R + +T AAA A+ P + A R P +L+ Sbjct: 478 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 525
>gi|3183544|sp|P11940|PAB1_HUMAN POLYADENYLATE-BINDING PROTEIN 1 (POLY(A)-BINDING PROTEIN 1) (PABP 1) (PABP1) >gi|1562511|gb|AAD08718.1| (U68105) poly(A)-binding protein [Homo sapiens] >gi|8979741|emb|CAB96752.1| (AJ401269) polyadenylate-binding protein 1 [Bos taurus] Length = 636 Frame 3 hits (HSPs): ______________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | | | 636 0 150 300 450 600 __________________ Annotated Domains: BLOCKS BL00030A: Eukaryotic RNA-binding region 13..31 BLOCKS BL00030B: Eukaryotic RNA-binding region 333..342 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 6..90 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 92..179 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 181..264 DOMO DM00012: RIBONUCLEOPROTEINREPEAT 286..363 DOMO DM02879: POLYADENYLATE-BINDINGPROTEIN 365..620 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 13..18 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 52..59 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 101..106 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 138..145 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 193..198 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 231..238 Entrez Domain: RNA-BINDING (RNP2) (BY SIMILARIT 296..301 Entrez Domain: RNA-BINDING (RNP1) (BY SIMILARIT 333..340 Entrez Domain: POLY-ALA. 495..501 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 13..84 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 101..170 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 193..263 PFAM rrm: RNA recognition motif. (a.k.a. RRM, 296..365 PFAM PABP: Poly-adenylate binding protein, un 543..614 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 14..50 PRODOM PD060589: PABP(4) PAB1(2) 52..96 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 102..132 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 137..186 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 194..228 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 230..278 PRODOM PD020858: ROA1(14) PABP(12) PAB1(8) 297..330 PRODOM PD000013: NUCL(15) PABP(12) RO31(6) 332..381 PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 383..451 PRODOM PD012528: PAB1(2) PABP(1) Q62029(1) 460..527 PRODOM PD001195: PAB1(4) Q13310(2) PABP(2) 534..555 PRODOM PD002964: PABP(4) PAB1(2) 557..625 PROSITE RNP_1: Eukaryotic putative RNA-binding r 138..145 PROSITE RNP_1: Eukaryotic putative RNA-binding r 231..238 PROSITE RNP_1: Eukaryotic putative RNA-binding r 333..340 __________________ Plus Strand HSPs: Score = 106 (37.3 bits), Expect = 0.012, P = 0.012 Identities = 53/167 (31%), Positives = 68/167 (40%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG--APGLGQ-QF 173 A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G + Q Q Sbjct: 359 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQN 418 Query: 174 LYGQGPP---AMMPP------QAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQGQRPV 326 PP A + P Q + Q +PG P P F M Q R + Sbjct: 419 RAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFST-MRPASSQVPRVM 477 Query: 327 GRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHA--RFPTSNLH 464 R + +T AAA A+ P + A R P +L+ Sbjct: 478 STQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLN 525
>gi|7413501|emb|CAB85692.1| (AJ271699) hypothetical protein [Agaricus bisporus] Length = 109 Frame 3 hits (HSPs): _______________________________ __________________________________________________ Database sequence: | | | | | | | 109 0 20 40 60 80 100 Plus Strand HSPs: Score = 83 (29.2 bits), Expect = 0.018, P = 0.018 Identities = 29/74 (39%), Positives = 33/74 (44%), Frame = +3 Query: 48 KEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGY 227 K E++A+ Q P P P YP P QQ Y QGPP PPQ G+G Sbjct: 1 KNEQQAQQPPQGGYYPPPQGPP---PGQGYYPQQPPQSYQQGGYYQGPP-QGPPQPGYGP 56 Query: 228 QQQLVPGMXPG-GGP 269 Q PG P GGP Sbjct: 57 PQ---PGYGPQPGGP 68
>gi|481728|pir||S39206 proline-rich protein V-beta 1 precursor - rat >gi|2144037|pir||A53118 ORF1 - black rat >gi|433617|emb|CAA52300.1| (X74229) ORF1 [Rattus rattus] >gi|471332|emb|CAA54831.1| (X77816) PR-Vbeta1 [Rattus norvegicus] Length = 148 Frame 3 hits (HSPs): ___________________________ Frame 1 hits (HSPs): ____________ Annotated Domains: ________________________ __________________________________________________ Database sequence: | | | | 148 0 50 100 __________________ Annotated Domains: DOMO DM01427: 1..70 __________________ Plus Strand HSPs: Score = 79 (27.8 bits), Expect = 0.022, Sum P(2) = 0.022 Identities = 29/80 (36%), Positives = 31/80 (38%), Frame = +3 Query: 123 PRMPLYPPGAPGLGQ----QFLYGQGPPAMMPPQAG-FGYQQQLVPGMXPGGGPMPSFFV 287 P P PP PG+GQ F G GPP PP FG PG P P P F Sbjct: 38 PPPPPPPPFGPGIGQPPPPHFGPGFGPPPPPPPPPPPFG------PGFGPPPPPPPFGFY 91 Query: 288 PMVQQGQQGQRPVGRPRNRSCATTP 362 P RP P R + P Sbjct: 92 PPYIPHPPHHRPPANPPTRPPPSNP 116 Score = 46 (16.2 bits), Expect = 0.022, Sum P(2) = 0.022 Identities = 10/34 (29%), Positives = 16/34 (47%), Frame = +1 Query: 346 PVQQPQQPMPMMQQQMLPRG-LSIVTLLGRNMQD 444 P P +P P +Q +P +S+ T + N D Sbjct: 113 PSNPPSRPPPTVQANTIPAANISVTTGIAPNSTD 146
>gi|12229876|sp|Q15097|PAB2_HUMAN POLYADENYLATE-BINDING PROTEIN 2 (POLY(A) BINDING PROTEIN 2) (PABP 2) >gi|1082703|pir||S52491 polyadenylate binding protein II - human >gi|693937|emb|CAA88401.1| (Z48501) polyadenylate binding protein II [Homo sapiens] Length = 522 Frame 3 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | | 522 0 150 300 450 Plus Strand HSPs: Score = 103 (36.3 bits), Expect = 0.024, P = 0.024 Identities = 26/49 (53%), Positives = 30/49 (61%), Frame = +3 Query: 12 AGKPLYVALAQRKEERRARLQAQFSQ-MRPVAITPS--VAPRMPLYPPG 149 A KPLYVALAQRKEER+A L Q+ Q M V P+ + P P P G Sbjct: 334 ATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 382
>gi|2665654|gb|AAB88449.1| (AF032896) polyadenylate binding protein [Petromyzon marinus] Length = 630 Frame 3 hits (HSPs): ____________ __________________________________________________ Database sequence: | | | | | | 630 0 150 300 450 600 Plus Strand HSPs: Score = 103 (36.3 bits), Expect = 0.031, P = 0.030 Identities = 55/148 (37%), Positives = 67/148 (45%), Frame = +3 Query: 6 RFAG-KPLYVALAQRKEERRARLQAQFSQ----MRPVAITPSVAPRMPLYPPGAPGLGQQ 170 R G KPLYVALAQRKEER+ L +QF Q MR A+ PS + Y P A G Sbjct: 357 RIIGSKPLYVALAQRKEERKMHLTSQFMQRLAGMR--AVPPSAI--IGQYQPAAAS-GY- 410 Query: 171 FLYGQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQG---QRPVGRPRN 341 F+ A MP QA G P P P + + + QG Q G R Sbjct: 411 FM------AAMPQQAQ-GRTAYYTPSPMAPMRPNPRWPLQVRPQGAHAAGFQAITGPMRQ 463 Query: 342 RSCATTPAANANDAAAD----ASKGTFYRYPPWPQHARFP 449 + T N A+ AS+G R P +P A P Sbjct: 464 PAPRPTQMRTVNPASVPQVPRASQGMMPR-PTFPTQAAGP 502
>gi|11602912 ref|NP_062603.1| proline-rich protein B, salivary; proline-rich salivary protein [Mus musculus] >gi|91204|pir||A29149 proline-rich protein - mouse >gi|200539|gb|AAA40000.1| (M11900) 15-kDa proline-rich salivary protein [Mus musculus] Length = 147 Frame 3 hits (HSPs): ___________________________________ __________________________________________________ Database sequence: | | | | 147 0 50 100 Plus Strand HSPs: Score = 92 (32.4 bits), Expect = 0.033, P = 0.033 Identities = 37/114 (32%), Positives = 45/114 (39%), Frame = +3 Query: 108 TPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPGGGPMPSFF 284 TP+ P P +PP P G QQ QG P PPQ G + Q G P GGP Sbjct: 29 TPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPG---KPQ---GPPPPGGPQQK-- 80 Query: 285 VPMVQQGQQGQRPVGRPRNRSCATTPAANANDAAADASKGTFYRYPPWPQHARFP 449 P QQG P G P+ + P + G R PP P + + P Sbjct: 81 -PPQPGNQQGPPPPGGPQQK-----PPQSGKPQGPPPPGGPQQR-PPQPGNQQSP 128
>gi|12229883|sp|Q9ZQA8|PABX_ARATH PROBABLE POLYADENYLATE-BINDING PROTEIN (POLY(A) BINDING PROTEIN) (PABP) >gi|4415911|gb|AAD20142.1| (AC006282) putative poly(A)-binding protein [Arabidopsis thaliana] Length = 609 Frame 3 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | || 609 0 150 300 450 600 Plus Strand HSPs: Score = 102 (35.9 bits), Expect = 0.039, P = 0.038 Identities = 27/60 (45%), Positives = 36/60 (60%), Frame = +3 Query: 9 FAGKPLYVALAQRKEERRARLQAQFS---QMRPVAITPSVAPRM--PLYPPGA-PGLGQQ 170 F GKPLYVA+AQ+KE+R+ +LQ QF + R + + SV P PLY PG+ Q Sbjct: 369 FHGKPLYVAIAQKKEDRKMQLQVQFGNRVEARKSSSSASVNPGTYAPLYYTNTHPGMVYQ 428
>gi|7481762|pir||T42100 serine/threonine protein kinase (EC 2.7.1.-) - Streptomyces coelicolor >gi|3766230|gb|AAC64406.1| (AF094711) serine/threonine protein kinase [Streptomyces coelicolor A3(2)] Length = 556 Frame 3 hits (HSPs): _____________ __________________________________________________ Database sequence: | | | | | 556 0 150 300 450 Plus Strand HSPs: Score = 101 (35.6 bits), Expect = 0.048, P = 0.047 Identities = 42/133 (31%), Positives = 54/133 (40%), Frame = +3 Query: 33 ALAQRKEERRARLQAQFSQMRPVAITPSVAPRMPLYPPGAP-----GLGQQFL--YGQGP 191 AL + ER +A + VA + AP P PGA G+G GQG Sbjct: 267 ALKKNPNERFPSAEAMRDECLRVAASFQAAP--PSIVPGAQTSSGAGVGSAVFPPVGQGT 324 Query: 192 PAMMPPQAGFGYQQQLVPGMXPGGGPMPSFFVPMVQQGQQG--QRPVGRP--RNRSCATT 359 PA P YQ L PG P G P P+ P QQ Q P P + ++ AT Sbjct: 325 PAPTGP-VQTPYQPTLSPGPNPYGTPAPAAHSPAYGYPQQAGYQTPAPAPYAQQQAAATP 383 Query: 360 PAANANDAAADASKGT 407 P N +A + G+ Sbjct: 384 PPYNLTPSAQGSGSGS 399
>gi|112205|pir||B39066 proline-rich protein 15 - rat Length = 278 Frame 3 hits (HSPs): ____________________________ Frame 1 hits (HSPs): _____ _______ Annotated Domains: ___________________________ ________________ __________________________________________________ Database sequence: | | | | | | | 278 0 50 100 150 200 250 __________________ Annotated Domains: DOMO DM03894: PROLINE-RICHPROTEIN 1..111 DOMO DM00250: 112..148 DOMO DM01369: PROLINE-RICHPROTEIN 172..256 __________________ Plus Strand HSPs: Score = 89 (31.3 bits), Expect = 0.056, Sum P(2) = 0.054 Identities = 36/84 (42%), Positives = 38/84 (45%), Frame = +3 Query: 87 QMRPVAITPSVAP--RMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGFGYQQQLVPGMXPG 260 Q +P P P R P PP PG G Q QGPP PP G QQ G P Sbjct: 73 QQKPQGPPPPGGPQQRPPQGPP-PPG-GPQ----QGPPQGPPPPGG---PQQRPQGPPPP 123 Query: 261 GGPM--PSFFVPM--VQQGQQGQRPVGRPR 338 GGP P P QQG QG P G P+ Sbjct: 124 GGPQQGPQGPPPPGGPQQGPQGPPPPGGPQ 153 Score = 85 (29.9 bits), Expect = 0.29, Sum P(2) = 0.26 Identities = 32/82 (39%), Positives = 34/82 (41%), Frame = +3 Query: 111 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGF--GYQQQLVPGMXPGGGPM--PS 278 P P+ P PPG P G Q G P PPQ G QQ G P GGP P Sbjct: 126 PQQGPQGPP-PPGGPQQGPQGPPPPGGPQQSPPQGPPPPGGPQQGPQGPPPPGGPQQSPP 184 Query: 279 FFVPMV---QQGQQGQRPVGRPR 338 P QQG QG P G P+ Sbjct: 185 QGPPPPGGPQQGPQGPPPPGGPQ 207 Score = 83 (29.2 bits), Expect = 0.54, Sum P(2) = 0.42 Identities = 29/76 (38%), Positives = 32/76 (42%), Frame = +3 Query: 111 PSVAPRMPLYPPGAPGLGQQFLYGQGPPAMMPPQAGF--GYQQQLVPGMXPGGGPMPSFF 284 P +P PPG P G Q G P PPQ G QQ G P GGP Sbjct: 152 PQQSPPQGPPPPGGPQQGPQGPPPPGGPQQSPPQGPPPPGGPQQGPQGPPPPGGP----- 206 Query: 285 VPMVQQGQQGQRPVGRPR 338 QQG+QG P G P+ Sbjct: 207 ----QQGRQGPPPPGGPQ 220 Score = 41 (14.4 bits), Expect = 0.056, Sum P(2) = 0.054 Identities = 11/22 (50%), Positives = 12/22 (54%), Frame = +1 Query: 343 GPVQQPQQPMPMM-QQQMLPRG 405 GP Q PQ P P QQ P+G Sbjct: 165 GPQQGPQGPPPPGGPQQSPPQG 186 Score = 39 (13.7 bits), Expect = 0.089, Sum P(2) = 0.085 Identities = 12/32 (37%), Positives = 15/32 (46%), Frame = +1 Query: 313 GSAQWAARGTGPVQQPQQPMPMM-QQQMLPRG 405 G Q +G P +PQQ P QQ P+G Sbjct: 232 GPQQRPPQGPPPPGRPQQRPPQPGNQQGPPQG 263
>gi|6981414 ref|NP_036764.1| proline-rich protein, salivary [Rattus norvegicus] >gi|92651|pir||A30496 proline-rich protein 13 - rat >gi|206710|gb|AAA42063.1| (M64792) salivary proline-rich protein [Rattus norvegicus] Length = 164 Frame 3 hits (HSPs): ________________________________________ __________________________________________________ Database sequence: | | | | | 164 0 50 100 150 Plus Strand HSPs: Score = 92 (32.4 bits), Expect = 0.059, P = 0.057 Identities = 42/130 (32%), Positives = 54/130 (41%), Frame = +3 Query: 75 AQFSQMRPVAITPSVAPRMPLYPPGAPGLG-QQFLYGQGPPAMMPPQAGF-------GYQ 230 AQ ++++ + TP+ P P +PP P G QQ QG P PPQ G G Sbjct: 16 AQEAELQSLDQTPNQKPPPPGFPPRPPANGSQQGPPPQGGPQQKPPQPGKPQGPPPPGGP 75 Query: 231 QQLVP------GMXPGGGPMPSFFVPMVQQGQQGQRPVGRPRNRSCATTPAANANDAAAD 392 QQ P G P GGP P QQG P G P+ + P + Sbjct: 76 QQKPPQPGKPQGPPPPGGPQQK---PPQPGNQQGPPPPGGPQQK-----PPQSGKPQGPP 127 Query: 393 ASKGTFYRYPPWPQHARFP 449 G R PP P + + P Sbjct: 128 PPGGPQQR-PPQPGNQQSP 145 WARNING: HSPs involving 187 database sequences were not reported due to the limiting value of parameter B = 50. Parameters: filter=none matrix=BLOSUM62 V=50 B=50 E=10 gi H=1 sort_by_pvalue echofilter ctxfactor=5.97 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H Std. 0 BLOSUM62 0.318 0.135 0.401 +3 0 BLOSUM62 0.318 0.135 0.401 0.323 0.138 0.457 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +2 0 BLOSUM62 0.318 0.135 0.401 0.324 0.131 0.500 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +1 0 BLOSUM62 0.318 0.135 0.401 0.341 0.151 0.510 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -1 0 BLOSUM62 0.318 0.135 0.401 0.338 0.152 0.568 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -2 0 BLOSUM62 0.318 0.135 0.401 0.319 0.132 0.427 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -3 0 BLOSUM62 0.318 0.135 0.401 0.334 0.144 0.518 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +3 0 166 163 10. 75 3 12 22 0.10 34 30 0.10 37 +2 0 167 164 10. 75 3 12 22 0.10 34 30 0.10 37 +1 0 167 165 10. 75 3 12 22 0.10 34 30 0.10 37 -1 0 167 164 10. 75 3 12 22 0.10 34 30 0.10 37 -2 0 167 165 10. 75 3 12 22 0.10 34 30 0.10 37 -3 0 166 164 10. 75 3 12 22 0.10 34 30 0.10 37 Statistics: Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr Title: nr Release date: unknown Posted date: 4:06 PM CST Feb 28, 2001 Format: BLAST # of letters in database: 197,782,623 # of sequences in database: 625,274 # of database sequences satisfying E: 237 No. of states in DFA: 582 (57 KB) Total size of DFA: 230 KB (256 KB) Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00 No. of threads or processors used: 6 Search cpu time: 214.04u 1.05s 215.09t Elapsed: 00:00:38 Total cpu time: 214.10u 1.11s 215.21t Elapsed: 00:00:38 Start: Mon Oct 1 20:50:15 2001 End: Mon Oct 1 20:50:53 2001 WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000