BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FN1346
(200 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19704681|ref|NP_604243.1| Hypothetical cytosolic protein... 357 3e-97
gi|148324508|gb|EDK89758.1| hypothetical protein FNP_1991 [... 256 5e-67
gi|47565334|ref|ZP_00236376.1| hypothetical protein cytosol... 149 9e-35
gi|47569007|ref|ZP_00239697.1| hypothetical protein cytosol... 148 2e-34
gi|49477847|ref|YP_036837.1| hypothetical protein BT9727_25... 147 4e-34
gi|119877203|ref|ZP_01644224.1| conserved hypothetical prot... 145 1e-33
gi|126650277|ref|ZP_01722505.1| hypothetical protein BB1490... 140 3e-32
gi|89097237|ref|ZP_01170127.1| hypothetical protein B14911_... 139 6e-32
gi|78060086|ref|YP_366661.1| hypothetical protein Bcep18194... 129 1e-28
gi|34762936|ref|ZP_00143916.1| Hypothetical Cytosolic Prote... 74 6e-12
gi|116691579|ref|YP_837112.1| MoeA domain protein, domain I... 65 2e-09
gi|118712529|ref|ZP_01565099.1| MoeA-like, domain I and II ... 65 2e-09
>gi|19704681|ref|NP_604243.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19714991|gb|AAL95542.1| Hypothetical cytosolic protein [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 200
Score = 357 bits (915), Expect = 3e-97, Method: Composition-based stats.
Identities = 200/200 (100%), Positives = 200/200 (100%)
Query: 1 MNIAEKYIEELKKAYYKNDGKEYWDKFEKIKIGATEENIKKIKEEFPETPDSLIELLKIV 60
MNIAEKYIEELKKAYYKNDGKEYWDKFEKIKIGATEENIKKIKEEFPETPDSLIELLKIV
Sbjct: 1 MNIAEKYIEELKKAYYKNDGKEYWDKFEKIKIGATEENIKKIKEEFPETPDSLIELLKIV 60
Query: 61 DGTYHREYQGEKITFYFLGSDVMGYPYYLLSSSQILENKKDGYCLFGGYIDGVYEDVEVD 120
DGTYHREYQGEKITFYFLGSDVMGYPYYLLSSSQILENKKDGYCLFGGYIDGVYEDVEVD
Sbjct: 61 DGTYHREYQGEKITFYFLGSDVMGYPYYLLSSSQILENKKDGYCLFGGYIDGVYEDVEVD 120
Query: 121 EKITDDSEKIKWLHFSDCMNNGGTSQLFIDFLPSEKGVKGQIVRYLHDPDEIEVIADSFD 180
EKITDDSEKIKWLHFSDCMNNGGTSQLFIDFLPSEKGVKGQIVRYLHDPDEIEVIADSFD
Sbjct: 121 EKITDDSEKIKWLHFSDCMNNGGTSQLFIDFLPSEKGVKGQIVRYLHDPDEIEVIADSFD 180
Query: 181 EYLEKLMEHDLDFISKDTIY 200
EYLEKLMEHDLDFISKDTIY
Sbjct: 181 EYLEKLMEHDLDFISKDTIY 200
>gi|148324508|gb|EDK89758.1| hypothetical protein FNP_1991 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 204
Score = 256 bits (654), Expect = 5e-67, Method: Composition-based stats.
Identities = 151/199 (75%), Positives = 171/199 (85%)
Query: 1 MNIAEKYIEELKKAYYKNDGKEYWDKFEKIKIGATEENIKKIKEEFPETPDSLIELLKIV 60
+NIA+KYIEELKKAYYKN GKE WD EKIK GA+EENIKK+KEE+PE PDSLIELLKIV
Sbjct: 5 VNIAKKYIEELKKAYYKNGGKEVWDNIEKIKEGASEENIKKLKEEYPEVPDSLIELLKIV 64
Query: 61 DGTYHREYQGEKITFYFLGSDVMGYPYYLLSSSQILENKKDGYCLFGGYIDGVYEDVEVD 120
DGTY REY+G+ + YFLGSDV YPYYLLSSSQILE K + Y + Y+D YE+VE+D
Sbjct: 65 DGTYFREYKGKTVASYFLGSDVEEYPYYLLSSSQILETKNEAYDFYADYVDREYEEVEID 124
Query: 121 EKITDDSEKIKWLHFSDCMNNGGTSQLFIDFLPSEKGVKGQIVRYLHDPDEIEVIADSFD 180
E+I DS+K+KWLHFSDCMNNGGTSQLFIDF PSEKGVKGQIVR+LHDPDEI VIADSFD
Sbjct: 125 EEIISDSKKMKWLHFSDCMNNGGTSQLFIDFSPSEKGVKGQIVRFLHDPDEIGVIADSFD 184
Query: 181 EYLEKLMEHDLDFISKDTI 199
EYLE+L+E LDFIS+D I
Sbjct: 185 EYLEELIESGLDFISEDMI 203
>gi|47565334|ref|ZP_00236376.1| hypothetical protein cytosolic protein [Bacillus cereus G9241]
gi|47557688|gb|EAL16014.1| hypothetical protein cytosolic protein [Bacillus cereus G9241]
Length = 193
Score = 149 bits (376), Expect = 9e-35, Method: Composition-based stats.
Identities = 88/209 (42%), Positives = 129/209 (61%), Gaps = 29/209 (13%)
Query: 1 MNIAEKYIEELKKAYYKNDGKEYWDKFEKIKIGATEENIKKIKEEFPETPDSLIELLKIV 60
M++ K++ LK A D + + GAT+ +I ++ ++P P+SLI LLK +
Sbjct: 1 MDLVNKFLNGLKAALSTADLEALNKAY-----GATKGDIDILRTKYPNCPESLISLLKNI 55
Query: 61 DGTYHREYQGEKITFYFLGSDVMGYPYYLLSSSQILENKKDGYCLFGGYIDGVYEDVEVD 120
DGTY R+Y ++T LGSDV YPYYLLS+ +++E+ K+G EDV
Sbjct: 56 DGTYWRKYGEHEVTVCILGSDVEEYPYYLLSTQEMIESSKEG------------EDVSYL 103
Query: 121 EKITDDSEKI------------KWLHFSDCMNNGGTSQLFIDFLPSEKGVKGQIVRYLHD 168
+ DD + + ++HFSDCMNNGGTS+L+IDF PSE+GV GQI+R+LHD
Sbjct: 104 LEYQDDEDAVDPKINPEGLLPGTYIHFSDCMNNGGTSKLYIDFNPSEEGVCGQIIRFLHD 163
Query: 169 PDEIEVIADSFDEYLEKLMEHDLDFISKD 197
PDE EVIA+SFDEYL+ L++ + +F+ +
Sbjct: 164 PDEYEVIANSFDEYLQDLIDGNFNFLGAE 192
>gi|47569007|ref|ZP_00239697.1| hypothetical protein cytosolic protein [Bacillus cereus G9241]
gi|47554276|gb|EAL12637.1| hypothetical protein cytosolic protein [Bacillus cereus G9241]
Length = 192
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 93/203 (45%), Positives = 135/203 (66%), Gaps = 19/203 (9%)
Query: 1 MNIAEKYIEELKKAYYKNDGKEYWDKFEKIKIGATEENIKKIKEEFPETPDSLIELLKIV 60
M++ K+++ LK A +D + + GAT+E+I ++ ++P P+SLI LL+ +
Sbjct: 1 MDLVNKFLKGLKAALSTDDLEALNKAY-----GATKEDIDILRLKYPNCPESLICLLENI 55
Query: 61 DGTYHREYQGEKITFYFLGSDVMGYPYYLLSSSQILENKKDG----YCLFGGYIDGVYED 116
DGTY R+Y ++T LGSDV YPYYLLS+ +++E+ K+G Y L Y+D
Sbjct: 56 DGTYWRKYGETEVTVCILGSDVEEYPYYLLSTQEMIESSKEGEDVSYLL-------EYQD 108
Query: 117 VE--VDEKITDDSE-KIKWLHFSDCMNNGGTSQLFIDFLPSEKGVKGQIVRYLHDPDEIE 173
E VD KI + ++HFSDCMNNGGTS+L+IDF PS+KGV GQI+R+LHDPDE E
Sbjct: 109 EEDVVDSKINPEGLLPGTYIHFSDCMNNGGTSKLYIDFNPSDKGVCGQIIRFLHDPDEYE 168
Query: 174 VIADSFDEYLEKLMEHDLDFISK 196
VIA+SFDEYL+ L++ D +F+ +
Sbjct: 169 VIANSFDEYLQDLIDDDFNFLEE 191
>gi|49477847|ref|YP_036837.1| hypothetical protein BT9727_2511 [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49329403|gb|AAT60049.1| conserved hypothetical protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 198
Score = 147 bits (370), Expect = 4e-34, Method: Composition-based stats.
Identities = 89/198 (44%), Positives = 134/198 (67%), Gaps = 9/198 (4%)
Query: 1 MNIAEKYIEELKKAYYKNDGKEYWDKFEKIKIGATEENIKKIKEEFPETPDSLIELLKIV 60
M++ K++ LK A +D + + GAT+E+I ++ ++P P+SLI LL+ +
Sbjct: 6 MDLVNKFLNGLKAALSTDDLEALNKAY-----GATKEDIDILRLKYPNCPESLISLLENI 60
Query: 61 DGTYHREYQGEKITFYFLGSDVMGYPYYLLSSSQILENKKDGYCLFGGYIDGVYEDVEV- 119
DGTY R+Y ++T LGSDV YPYYLLS+ +++E+ K+G + Y+ +D +V
Sbjct: 61 DGTYWRKYGENEVTVCILGSDVEEYPYYLLSTQEMIESSKEGEDV--SYLLEYQDDEDVV 118
Query: 120 DEKITDDSE-KIKWLHFSDCMNNGGTSQLFIDFLPSEKGVKGQIVRYLHDPDEIEVIADS 178
D KI + ++HFSDCMNNGGTS+L+IDF PS++GV GQI+R+LHDPDE EVIA+S
Sbjct: 119 DSKINPEGLLPGTYIHFSDCMNNGGTSKLYIDFNPSDEGVCGQIIRFLHDPDEYEVIANS 178
Query: 179 FDEYLEKLMEHDLDFISK 196
FDEYL+ L++ D +F+ +
Sbjct: 179 FDEYLQDLIDGDFNFLEE 196
>gi|119877203|ref|ZP_01644224.1| conserved hypothetical protein [Stenotrophomonas maltophilia
R551-3]
gi|119820275|gb|EAX22890.1| conserved hypothetical protein [Stenotrophomonas maltophilia
R551-3]
Length = 198
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 82/205 (40%), Positives = 123/205 (60%), Gaps = 17/205 (8%)
Query: 1 MNIAEKYIEELKKAYYKNDGKEYWDKFEKIKIGATEENIKKIKEEFPETPDSLIELLKIV 60
MN+ ++++ L +D + W + GA+ E++++++ ++P+ PDSL+ LL V
Sbjct: 1 MNLVDRFLSGLIPRLPADDAPQ-WAHVQ----GASAEDLQRLRAQWPQVPDSLVALLSRV 55
Query: 61 DGTYHREYQGEKITFYFLGSDVMG--YPYYLLSSSQILENKKDGYCLFGGYIDGVYEDVE 118
+GT+ REY G ++ LGSDV G YPYYL S +Q+ E+++ + I +YE+
Sbjct: 56 NGTHFREYPGGEVCVLMLGSDVEGGGYPYYLRSVAQVFEDQRQ----WDDSIRSIYEEWL 111
Query: 119 VDEK------ITDDSEKIKWLHFSDCMNNGGTSQLFIDFLPSEKGVKGQIVRYLHDPDEI 172
DE I D + L FS CMNNGGTS L++DF P+ G GQ+VRYLHDPD
Sbjct: 112 DDEPEILGEGIDADLPMNRRLCFSHCMNNGGTSMLYLDFDPAPGGTVGQVVRYLHDPDSY 171
Query: 173 EVIADSFDEYLEKLMEHDLDFISKD 197
VIA SFD YL++L++ D FI +D
Sbjct: 172 AVIAPSFDAYLQQLIDRDYAFIDQD 196
>gi|126650277|ref|ZP_01722505.1| hypothetical protein BB14905_18025 [Bacillus sp. B14905]
gi|126592927|gb|EAZ86909.1| hypothetical protein BB14905_18025 [Bacillus sp. B14905]
Length = 210
Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats.
Identities = 79/164 (48%), Positives = 111/164 (67%), Gaps = 2/164 (1%)
Query: 33 GATEENIKKIKEEFPETPDSLIELLKIVDGTYHREYQGEKITFYFLGSDVMGYPYYLLSS 92
GAT+ I+ + E FP++P S IELL+ V+GTYH ++ E I+ LGSD+ YPYYL +
Sbjct: 42 GATDAQIESLLEIFPQSPQSFIELLQDVNGTYHCKHGQENISVLVLGSDLGDYPYYLKAV 101
Query: 93 SQILENKKDGY-CLFGGYIDGVYEDVEVDEKITDDSEKIKWLHFSDCMNNGGTSQLFIDF 151
QIL + ++ +F Y D E V++D++I + L F+DCMNNGGTS L++DF
Sbjct: 102 EQILADAQNQRETIFERYQD-FLEYVDIDKRINMHVPLNERLCFADCMNNGGTSCLYLDF 160
Query: 152 LPSEKGVKGQIVRYLHDPDEIEVIADSFDEYLEKLMEHDLDFIS 195
P+E G GQ+VRY+HDPD EVIA SFDEYL++L+E D +F +
Sbjct: 161 SPAEGGKMGQVVRYVHDPDSFEVIASSFDEYLQQLVEGDYEFTA 204
>gi|89097237|ref|ZP_01170127.1| hypothetical protein B14911_16700 [Bacillus sp. NRRL B-14911]
gi|89088060|gb|EAR67171.1| hypothetical protein B14911_16700 [Bacillus sp. NRRL B-14911]
Length = 193
Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats.
Identities = 80/168 (47%), Positives = 116/168 (69%), Gaps = 6/168 (3%)
Query: 33 GATEENIKKIKEEFPETPDSLIELLKIVDGTYHREYQGEKITFYFLGSDVMG--YPYYLL 90
GA +E + ++ +P P+SL+ LLK +DGTY R+Y ++I LGSDV YPYYLL
Sbjct: 28 GAAKEYLTTLQLHYPNCPESLLNLLKNIDGTYFRKYGEDQIAICILGSDVEDGTYPYYLL 87
Query: 91 SSSQILENKKDGYCLFGGYIDGVYEDVEVDEKITDDSE-KIKWLHFSDCMNNGGTSQLFI 149
S+ Q+LE+ K+ + Y+ YE+ VD KI +S +LHFSDCMNNGGTS L+I
Sbjct: 88 STQQMLESSKEEVDI--SYLSE-YEEEGVDPKINPESLLPGTYLHFSDCMNNGGTSSLYI 144
Query: 150 DFLPSEKGVKGQIVRYLHDPDEIEVIADSFDEYLEKLMEHDLDFISKD 197
DF P+++GV GQI+R+LHDPDE +VIA+ FDEYL+ L+++ ++ ++
Sbjct: 145 DFNPTDQGVSGQIIRFLHDPDEFKVIANCFDEYLQGLIDNGFRYVYEE 192
>gi|78060086|ref|YP_366661.1| hypothetical protein Bcep18194_C6971 [Burkholderia sp. 383]
gi|77964636|gb|ABB06017.1| hypothetical protein Bcep18194_C6971 [Burkholderia sp. 383]
Length = 197
Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 39 IKKIKEEFPETPDSLIELLKIVDGTYHREYQGEKITFYFLGSDVMGYPYYLLSSSQILEN 98
+ +++ +P+ P SL+ELL +DGTY R+Y G + LGSDV YPYYLLS+ Q+LE
Sbjct: 34 LDALRDAYPQCPASLLELLGKLDGTYWRDYGGTTVNVLVLGSDVYEYPYYLLSAGQMLEE 93
Query: 99 -KKDGYCLFGGYIDGVYEDVE-VDEKITDDSEKIKWLHFSDCMNNGGTSQLFIDFLPSEK 156
K + Y D +D E VD +I + L FS CMNNGGTSQL+IDF P+
Sbjct: 94 GAKYRDSIAEIYGDDANDDGELVDSRIDIALPMNRRLCFSHCMNNGGTSQLYIDFEPAPG 153
Query: 157 GVKGQIVRYLHDPDEIEVIADSFDEYLEKLMEHDLDFI 194
G GQ+VR+LHDPD VIAD FD YL KL++ F+
Sbjct: 154 GKVGQVVRFLHDPDSYAVIADDFDGYLRKLIDDGYAFV 191
>gi|34762936|ref|ZP_00143916.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887397|gb|EAA24487.1| Hypothetical Cytosolic Protein [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 55
Score = 73.6 bits (179), Expect = 6e-12, Method: Composition-based stats.
Identities = 41/48 (85%), Positives = 44/48 (91%)
Query: 153 PSEKGVKGQIVRYLHDPDEIEVIADSFDEYLEKLMEHDLDFISKDTIY 200
PSEKG KGQIVRYLHD +EIEVIADSFDEYLEK ME+ LDFIS+DTIY
Sbjct: 8 PSEKGKKGQIVRYLHDSNEIEVIADSFDEYLEKFMEYGLDFISEDTIY 55
>gi|116691579|ref|YP_837112.1| MoeA domain protein, domain I and II [Burkholderia cenocepacia
HI2424]
gi|116649579|gb|ABK10219.1| MoeA domain protein, domain I and II [Burkholderia cenocepacia
HI2424]
Length = 693
Score = 65.1 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 24/154 (15%)
Query: 34 ATEENIKKIKEEFPET-PDSLIELLKIVDGTYHREYQGEKITFYFLGSDVMGYPYYLLSS 92
A++++I ++ T PD+L++ L+I DG + GE F GSD LLS+
Sbjct: 550 ASDDDIAALQVALGATLPDALVDSLRIHDG---QAALGEA----FSGSDA------LLSA 596
Query: 93 SQILENKKDGYCLFGGYID-GVYEDV--EVDEKITDDSEKIKWLHFSDCMNNGGTSQLFI 149
+IL + ++ G +D G + D+ E D I DD +KW+ F+ ++G + L +
Sbjct: 597 REILAQWR----IWKGLVDAGDFGDMTSEPDAGIADDWYNLKWIPFT---HDGSGNHLCV 649
Query: 150 DFLPSEKGVKGQIVRYLHDPDEIEVIADSFDEYL 183
D P+E GV GQ++R HD E IA SF E+L
Sbjct: 650 DLDPAEGGVAGQVIRVWHDDARRERIARSFPEWL 683
>gi|118712529|ref|ZP_01565099.1| MoeA-like, domain I and II [Burkholderia cenocepacia MC0-3]
gi|118649981|gb|EAV56776.1| MoeA-like, domain I and II [Burkholderia cenocepacia MC0-3]
Length = 691
Score = 65.1 bits (157), Expect = 2e-09, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 24/154 (15%)
Query: 34 ATEENIKKIKEEFPET-PDSLIELLKIVDGTYHREYQGEKITFYFLGSDVMGYPYYLLSS 92
A++++I ++ T PD+L++ L+I DG + GE F GSD LLS+
Sbjct: 548 ASDDDIAALQVALGATLPDALVDSLRIHDG---QAALGEA----FSGSDA------LLSA 594
Query: 93 SQILENKKDGYCLFGGYID-GVYEDV--EVDEKITDDSEKIKWLHFSDCMNNGGTSQLFI 149
+IL + ++ G +D G + D+ E D I DD +KW+ F+ ++G + L +
Sbjct: 595 REILAQWR----IWKGLVDAGDFGDMTSEPDAGIADDWYNLKWIPFT---HDGSGNHLCV 647
Query: 150 DFLPSEKGVKGQIVRYLHDPDEIEVIADSFDEYL 183
D P+E GV GQ++R HD E IA SF E+L
Sbjct: 648 DLDPAEGGVAGQVIRVWHDDARRERIARSFPEWL 681
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.316 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 826,329,434
Number of Sequences: 5470121
Number of extensions: 37297635
Number of successful extensions: 88866
Number of sequences better than 1.0e-05: 14
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 88845
Number of HSP's gapped (non-prelim): 14
length of query: 200
length of database: 1,894,087,724
effective HSP length: 126
effective length of query: 74
effective length of database: 1,204,852,478
effective search space: 89159083372
effective search space used: 89159083372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)