R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 103 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|11465998 ref|NP_054540.1| ribosomal protein L2 [Nicotiana tabacum]
>gi|11466035 ref|NP_054577.1| ribosomal protein L2 [Nicotiana
tabacum] >gi|132866|sp|P06379|RK2_TOBAC CHLOROPLAST 50S RIBOSOMAL
PROTEIN L2 >gi|71086|pir||R5NT2 ribosomal protein L2 - common
tobacco chloroplast >gi|435269|emb|CAA77384.1| (Z00044) ribosomal
protein L2 [Nicotiana tabacum] >gi|1223691|emb|CAA77409.1| (Z00044)
ribosomal protein L2 [Nicotiana tabacum] >gi|225238|prf||1211235BW
ribosomal protein L2 [Nicotiana tabacum]
Length = 274
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
Plus Strand HSPs:
Score = 593 (208.7 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 110/117 (94%), Positives = 113/117 (96%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
VDSQVKSNPRN+LIYGQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRNEK+IYGRIV
Sbjct: 18 VDSQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIV 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
TIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPIKMGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMP 134
Score = 43 (15.1 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 134 PLGTAIHNI 142
>gi|132861|sp|P21434|RK2_NICDE CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
>gi|71087|pir||R5NT2D ribosomal protein L2 - Debney's tobacco
chloroplast >gi|5708092|emb|CAB52367.1| (X00798) L2 protein
[Nicotiana debneyi]
Length = 266
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): _______________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 266
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 40..245
PRODOM PD007392: RK2(9) 2..46
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 48..111
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 114..228
PRODOM PD033156: RK2(2) 231..265
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 216..227
__________________
Plus Strand HSPs:
Score = 593 (208.7 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 110/117 (94%), Positives = 113/117 (96%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
VDSQVKSNPRN+LIYGQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRNEK+IYGRIV
Sbjct: 18 VDSQVKSNPRNNLIYGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIV 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
TIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPIKMGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMP 134
Score = 43 (15.1 bits), Expect = 2.3e-59, Sum P(2) = 2.3e-59
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 134 PLGTAIHNI 142
>gi|132863|sp|P27107|RK2_SINAL CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
>gi|12214|emb|CAA46568.1| (X65615) ribosomal protein L2 [Sinapis
alba]
Length = 274
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): _______________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 40..274
PRODOM PD007392: RK2(9) 2..46
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 48..111
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 114..271
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 216..227
__________________
Plus Strand HSPs:
Score = 587 (206.6 bits), Expect = 1.0e-58, Sum P(2) = 1.0e-58
Identities = 109/118 (92%), Positives = 112/118 (94%), Frame = +2
Query: 2 AVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRI 181
AVDSQVKSNPRN+LIYGQH CGKGRNARGIIT HRGGGHKRLYRKIDFRRN K+IYGRI
Sbjct: 17 AVDSQVKSNPRNNLIYGQHHCGKGRNARGIITVRHRGGGHKRLYRKIDFRRNTKDIYGRI 76
Query: 182 VTIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
VTIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPIKMGNALPLTDMP
Sbjct: 77 VTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMP 134
Score = 43 (15.1 bits), Expect = 1.0e-58, Sum P(2) = 1.0e-58
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 134 PLGTAIHNI 142
>gi|7525074 ref|NP_051099.1| ribosomal protein L2 [Arabidopsis thaliana]
>gi|7525099 ref|NP_051123.1| ribosomal protein L2 [Arabidopsis
thaliana] >gi|6685857|sp|P56791|RK2_ARATH CHLOROPLAST 50S RIBOSOMAL
PROTEIN L2 >gi|5881735|dbj|BAA84426.1| (AP000423) ribosomal protein
L2 [Arabidopsis thaliana] >gi|5881760|dbj|BAA84451.1| (AP000423)
ribosomal protein L2 [Arabidopsis thaliana]
Length = 274
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
Plus Strand HSPs:
Score = 582 (204.9 bits), Expect = 3.4e-58, Sum P(2) = 3.4e-58
Identities = 109/118 (92%), Positives = 112/118 (94%), Frame = +2
Query: 2 AVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRI 181
AVDSQVKSNPRN+LI GQH CGKGRNARGIITA HRGGGHKRLYRKIDFRRN K+IYGRI
Sbjct: 17 AVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRI 76
Query: 182 VTIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
VTIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPIKMGNALPLTDMP
Sbjct: 77 VTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMP 134
Score = 43 (15.1 bits), Expect = 3.4e-58, Sum P(2) = 3.4e-58
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 134 PLGTAIHNI 142
>gi|132865|sp|P06509|RK2_SPIOL CHLOROPLAST 50S RIBOSOMAL PROTEIN L2 (RIBOSOMAL
PROTEIN CS-L4) >gi|71090|pir||R5SP2 ribosomal protein L2 - spinach
chloroplast >gi|12303|emb|CAA25377.1| (X00797) ribosomal protein L2
[Spinacia oleracea]
Length = 286
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ____________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | | | 286
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM00314: RIBOSOMALPROTEINL2 36..259
Entrez methylation site 2
PFAM Ribosomal_L2: Ribosomal Proteins L2 37..232
PRODOM PD007392: RK2(9) 1..43
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 45..108
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 111..225
PRODOM PD033156: RK2(2) 228..262
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 214..225
__________________
Plus Strand HSPs:
Score = 564 (198.5 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 105/114 (92%), Positives = 109/114 (95%), Frame = +2
Query: 14 QVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIE 193
QVKSNPRN+LI GQ RCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEK+IYG+IVTIE
Sbjct: 19 QVKSNPRNNLISGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIE 78
Query: 194 YDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
YDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPIKMGNALPLTDMP
Sbjct: 79 YDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMP 132
Score = 43 (15.1 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 132 PLGTAIHNI 140
>gi|1334381|emb|CAA43983.1| (X62070) large ribosomal protein 2 [Zea mays]
Length = 150
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | 150
0 50 100
Plus Strand HSPs:
Score = 564 (198.5 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 104/117 (88%), Positives = 110/117 (94%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+K+I GRI+
Sbjct: 18 VDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRII 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
TIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMP 134
Score = 43 (15.1 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 134 PLGTAIHNI 142
>gi|11497599 ref|NP_055005.1| ribosomal protein l12 [Spinacia oleracea]
>gi|6682317|emb|CAB56543.3| (AJ244023) chloroplast ribosomal
protein L2 [Spinacia oleracea] >gi|7636180|emb|CAB88803.1|
(AJ400848) ribosomal protein l12 [Spinacia oleracea]
Length = 272
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | 272
0 50 100 150 200 250
Plus Strand HSPs:
Score = 564 (198.5 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 105/114 (92%), Positives = 109/114 (95%), Frame = +2
Query: 14 QVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIE 193
QVKSNPRN+LI GQ RCGKGRNARGIITA HRGGGHKRLYRKIDFRRNEK+IYG+IVTIE
Sbjct: 19 QVKSNPRNNLISGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIVTIE 78
Query: 194 YDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
YDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPIKMGNALPLTDMP
Sbjct: 79 YDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMP 132
Score = 43 (15.1 bits), Expect = 2.6e-56, Sum P(2) = 2.6e-56
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 132 PLGTAIHNI 140
>gi|400994|sp|P31163|RK2_PEA CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
>gi|81970|pir||S17442 ribosomal protein L2 - garden pea chloroplast
>gi|12176|emb|CAA41756.1| (X59015) ribosomal protein L2 [Pisum
sativum]
Length = 273
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): _______________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 40..273
PRODOM PD007392: RK2(9) 2..46
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 48..110
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 113..270
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 215..226
__________________
Plus Strand HSPs:
Score = 554 (195.0 bits), Expect = 3.0e-55, Sum P(2) = 3.0e-55
Identities = 104/118 (88%), Positives = 110/118 (93%), Frame = +2
Query: 2 AVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRI 181
AV+SQVKSN RN LI GQH CGKGRN RGIITAGHRGGGHKRLYRKIDFRRNEK+IYGRI
Sbjct: 17 AVNSQVKSNSRNRLISGQHHCGKGRNPRGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRI 76
Query: 182 VTIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
+TIEYDPNRNA+ICLIHYGDGEK+YILHP+ AIIGDTIV GT VPIKMGNALPLTDMP
Sbjct: 77 ITIEYDPNRNAHICLIHYGDGEKRYILHPK-AIIGDTIVYGTEVPIKMGNALPLTDMP 133
Score = 43 (15.1 bits), Expect = 3.0e-55, Sum P(2) = 3.0e-55
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 133 PLGTAIHNI 141
>gi|11467235 ref|NP_043066.1| ribosomal protein L2 [Zea mays] >gi|11467278
ref|NP_043110.1| ribosomal protein L2 [Zea mays]
>gi|132857|sp|P17788|RK2_MAIZE CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
>gi|71089|pir||R5ZM2 ribosomal protein L2 - maize chloroplast
>gi|2673858|emb|CAA60329.1| (X86563) ribosomal protein L2 [Zea
mays] >gi|2673859|emb|CAA60371.1| (X86563) ribosomal protein L2
[Zea mays]
Length = 273
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 566 (199.2 bits), Expect = 7.8e-54, P = 7.8e-54
Identities = 110/136 (80%), Positives = 118/136 (86%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+K+I GRI+
Sbjct: 18 VDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRII 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRX 364
TIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPL-- 135
Query: 365 GNT*HXKSPSR-KG*QL 412
G H +R +G QL
Sbjct: 136 GTAIHNIEITRGRGGQL 152
>gi|577558|emb|CAA55028.1| (X78185) rpl 2 [Hordeum vulgare]
Length = 273
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 566 (199.2 bits), Expect = 7.8e-54, P = 7.8e-54
Identities = 110/136 (80%), Positives = 119/136 (87%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
VD QVKSNPRN+LI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+K+I GRIV
Sbjct: 18 VDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIV 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRX 364
TIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPL-- 135
Query: 365 GNT*HXKSPSR-KG*QL 412
G H +R +G QL
Sbjct: 136 GTAMHNIEITRGRGGQL 152
>gi|730553|sp|P41096|RK2_HORVU CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
Length = 273
Frame 2 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 40..273
PRODOM PD007392: RK2(9) 2..46
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 48..111
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 114..272
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 216..227
__________________
Plus Strand HSPs:
Score = 566 (199.2 bits), Expect = 7.8e-54, P = 7.8e-54
Identities = 110/136 (80%), Positives = 119/136 (87%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
VD QVKSNPRN+LI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+K+I GRIV
Sbjct: 18 VDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIV 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRX 364
TIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPL-- 135
Query: 365 GNT*HXKSPSR-KG*QL 412
G H +R +G QL
Sbjct: 136 GTAMHNIEITRGRGGQL 152
>gi|3900977|emb|CAA37241.1| (X53066) ribosomal protein L2 [Zea mays]
Length = 273
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 566 (199.2 bits), Expect = 7.8e-54, P = 7.8e-54
Identities = 110/136 (80%), Positives = 118/136 (86%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
VD QVKSNPRN LI+G+HRCGKGRNARGIITA HRGGGHKRLYRKIDFRRN+K+I GRI+
Sbjct: 18 VDRQVKSNPRNKLIHGRHRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNQKDISGRII 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRX 364
TIEYDPNRNAYICLIHYGDGEK+YILHPR AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPL-- 135
Query: 365 GNT*HXKSPSR-KG*QL 412
G H +R +G QL
Sbjct: 136 GTAIHNIEITRGRGGQL 152
>gi|2769663|gb|AAD15254.1| (L40578) ribosomal protein L2 [Oryza sativa]
Length = 273
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 564 (198.5 bits), Expect = 1.3e-53, P = 1.3e-53
Identities = 110/136 (80%), Positives = 118/136 (86%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
+D QVKSNPRN+LI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRNEK+I GRIV
Sbjct: 18 IDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNEKDISGRIV 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRX 364
TIEYDPNRNAYICLIHYGDGEK YILHPR AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPL-- 135
Query: 365 GNT*HXKSPSR-KG*QL 412
G H +R +G QL
Sbjct: 136 GTAIHNIEITRGRGGQL 152
>gi|6723791|emb|CAB67201.1| (AJ271079) ribosomal protein L2 [Oenothera elata
subsp. hookeri] >gi|6723832|emb|CAB67244.1| (AJ271079) ribosomal
protein L2 [Oenothera elata subsp. hookeri]
Length = 274
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
Plus Strand HSPs:
Score = 562 (197.8 bits), Expect = 2.1e-53, P = 2.1e-53
Identities = 111/137 (81%), Positives = 119/137 (86%), Frame = +2
Query: 2 AVDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRI 181
AVDSQVKSN R +LIYGQ RC KGRNARGIITAGHRGGGHKRLYRKIDFRRNE++IYGRI
Sbjct: 17 AVDSQVKSNTRKNLIYGQPRCSKGRNARGIITAGHRGGGHKRLYRKIDFRRNERDIYGRI 76
Query: 182 VTIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFR 361
V+IEYDPNRNA ICLIHYGDGEK+YILHPR AIIGDTIVSGT VPIKMGNALPLT+MP
Sbjct: 77 VSIEYDPNRNASICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTEMPL- 135
Query: 362 XGNT*HX-KSPSRKG*QL 412
G H ++ KG QL
Sbjct: 136 -GTALHNIENTLGKGGQL 152
>gi|132862|sp|P17351|RK2_ORYSA CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
>gi|71088|pir||R5RZ2 ribosomal protein L2 - rice chloroplast
Length = 273
Frame 2 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 40..273
PRODOM PD007392: RK2(9) 2..46
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 48..111
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 114..272
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 216..227
__________________
Plus Strand HSPs:
Score = 561 (197.5 bits), Expect = 2.7e-53, P = 2.7e-53
Identities = 109/136 (80%), Positives = 118/136 (86%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
+D QVKSNPRN+LI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+K+I GRIV
Sbjct: 18 IDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIV 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRX 364
TIEYDPNRNAYICLIHYGDGEK YILHPR AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPL-- 135
Query: 365 GNT*HXKSPSR-KG*QL 412
G H +R +G QL
Sbjct: 136 GTAIHNIEITRGRGGQL 152
>gi|11466866 ref|NP_039463.1| ribosomal protein L2 [Oryza sativa] >gi|11466870
ref|NP_039427.1| ribosomal protein L2 [Oryza sativa]
>gi|1213600|emb|CAA33924.1| (X15901) ribosomal protein L2 [Oryza
sativa] >gi|1213602|emb|CAA33928.1| (X15901) ribosomal protein L2
[Oryza sativa] >gi|226679|prf||1603356DG ribosomal protein L2
[Oryza sativa]
Length = 273
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | | 273
0 50 100 150 200 250
Plus Strand HSPs:
Score = 561 (197.5 bits), Expect = 2.7e-53, P = 2.7e-53
Identities = 109/136 (80%), Positives = 118/136 (86%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
+D QVKSNPRN+LI+G+HRCGKGRN+RGIITA HRGGGHKRLYRKIDFRRN+K+I GRIV
Sbjct: 18 IDRQVKSNPRNNLIHGRHRCGKGRNSRGIITARHRGGGHKRLYRKIDFRRNQKDISGRIV 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRX 364
TIEYDPNRNAYICLIHYGDGEK YILHPR AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGEKGYILHPRGAIIGDTIVSGTKVPISMGNALPLTDMPL-- 135
Query: 365 GNT*HXKSPSR-KG*QL 412
G H +R +G QL
Sbjct: 136 GTAIHNIEITRGRGGQL 152
>gi|11466971 ref|NP_054392.1| ribosomal protein L2 [Epifagus virginiana]
>gi|11466979 ref|NP_054398.1| ribosomal protein L2 [Epifagus
virginiana] >gi|266937|sp|P30065|RK2_EPIVI CHLOROPLAST 50S
RIBOSOMAL PROTEIN L2 >gi|7440621|pir||S78397 ribosomal protein L2,
plastid - beechdrops plastid >gi|336921|gb|AAA65866.1| (M81884)
ribosomal protein L2 [Epifagus virginiana]
>gi|336923|gb|AAA65874.1| (M81884) ribosomal protein L2 [Epifagus
virginiana]
Length = 274
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
Plus Strand HSPs:
Score = 535 (188.3 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 99/117 (84%), Positives = 105/117 (89%), Frame = +2
Query: 5 VDSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIV 184
V SQVKSNPR +LIYGQH CGKGRN RGIIT HRGGGHKRLYRKI F RNEK IYGRI+
Sbjct: 18 VYSQVKSNPRKNLIYGQHHCGKGRNVRGIITTRHRGGGHKRLYRKISFIRNEKYIYGRII 77
Query: 185 TIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
TIEYDPNRNAYICLIHYGDG+K+YILHPR AIIGDT+VSGT VPI +GNALPLTDMP
Sbjct: 78 TIEYDPNRNAYICLIHYGDGDKRYILHPRGAIIGDTLVSGTEVPIIIGNALPLTDMP 134
Score = 43 (15.1 bits), Expect = 3.0e-53, Sum P(2) = 3.0e-53
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 134 PLGTAIHNI 142
>gi|11022833|gb|AAG26146.1| (AF123798) ribosomal protein L2 [Trochodendron
aralioides]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 452 (159.1 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 83/88 (94%), Positives = 86/88 (97%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITAGHRGGGHKRLYRKIDFRRNEK+IYGRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
A+IGDTIVSGT VPIKMGNALPLTDMP
Sbjct: 61 GALIGDTIVSGTEVPIKMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 1.6e-44, Sum P(2) = 1.6e-44
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|11022817|gb|AAG26138.1| (AF123790) ribosomal protein L2 [Cercidiphyllum
japonicum]
Length = 188
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 188
0 50 100 150
Plus Strand HSPs:
Score = 446 (157.0 bits), Expect = 6.8e-44, Sum P(2) = 6.8e-44
Identities = 82/87 (94%), Positives = 85/87 (97%), Frame = +2
Query: 95 TAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRX 274
TAGHRGGGHKRLYRKIDFRRN+K+IYGRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 TAGHRGGGHKRLYRKIDFRRNKKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRG 60
Query: 275 AIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPIKMGNALPLTDMP
Sbjct: 61 AIIGDTIVSGTEVPIKMGNALPLTDMP 87
Score = 43 (15.1 bits), Expect = 6.8e-44, Sum P(2) = 6.8e-44
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 87 PLGTAIHNI 95
>gi|7524696 ref|NP_042450.1| ribosomal protein L2 [Pinus thunbergii]
>gi|7440632|pir||T07531 ribosomal protein L2 - Japanese black pine
chloroplast (fragment) >gi|2626947|dbj|BAA23474.1| (D17510)
ribosomal protein L2 [Pinus thunbergii]
Length = 276
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 445 (156.6 bits), Expect = 8.7e-44, Sum P(2) = 8.7e-44
Identities = 80/116 (68%), Positives = 96/116 (82%), Frame = +2
Query: 8 DSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVT 187
D +V+ +P+ L GQH CGKGRN RGIITA HRGGGHKRLYR+IDFRRN+++I G IVT
Sbjct: 22 DGRVQLDPQKKLTSGQHHCGKGRNGRGIITARHRGGGHKRLYRQIDFRRNKEHISGEIVT 81
Query: 188 IEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
IEYDPNR+AYIC +HY +G+K YILHPR +IGDTI+SG PI +GNALPLT+MP
Sbjct: 82 IEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMP 137
Score = 43 (15.1 bits), Expect = 8.7e-44, Sum P(2) = 8.7e-44
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 137 PLGTAIHNI 145
>gi|11022809|gb|AAG26134.1| (AF123786) ribosomal protein L2 [Asarum canadense]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 440 (154.9 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 82/88 (93%), Positives = 84/88 (95%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITAGHRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTIVSGTEVPISMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|11022821|gb|AAG26140.1| (AF123792) ribosomal protein L2 [Drimys winteri]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 440 (154.9 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 82/88 (93%), Positives = 84/88 (95%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITAGHRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTIVSGTEVPISMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|11022827|gb|AAG26143.1| (AF123795) ribosomal protein L2 [Lactoris
fernandeziana]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 440 (154.9 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 82/88 (93%), Positives = 84/88 (95%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITAGHRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTIVSGTEVPISMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|12005305|gb|AAG44384.1| (AF235047) ribosomal protein L2 [Amborella
trichopoda]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 440 (154.9 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 82/88 (93%), Positives = 84/88 (95%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITAGHRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTIVSGTEVPISMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|11022815|gb|AAG26137.1| (AF123789) ribosomal protein L2 [Ceratophyllum
demersum]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 439 (154.5 bits), Expect = 4.7e-43, Sum P(2) = 4.7e-43
Identities = 81/88 (92%), Positives = 84/88 (95%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITAGHRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDT+VSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTVVSGTEVPISMGNALPLTDMP 88
Score = 42 (14.8 bits), Expect = 4.7e-43, Sum P(2) = 4.7e-43
Identities = 7/9 (77%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHN+
Sbjct: 88 PLGTAIHNV 96
>gi|11022807|gb|AAG26133.1| (AF123785) ribosomal protein L2 [Acorus calamus]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 436 (153.5 bits), Expect = 7.6e-43, Sum P(2) = 7.6e-43
Identities = 81/88 (92%), Positives = 84/88 (95%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITAGHRGGGHKRLYRKIDFRRN+K+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITAGHRGGGHKRLYRKIDFRRNKKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTIVSGTEVPISMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 7.6e-43, Sum P(2) = 7.6e-43
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|11022831|gb|AAG26145.1| (AF123797) ribosomal protein L2 [Saururus cernuus]
Length = 197
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Plus Strand HSPs:
Score = 436 (153.5 bits), Expect = 7.6e-43, Sum P(2) = 7.6e-43
Identities = 81/87 (93%), Positives = 83/87 (95%), Frame = +2
Query: 95 TAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRX 274
TAGHRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 TAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRG 60
Query: 275 AIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 AIIGDTIVSGTEVPISMGNALPLTDMP 87
Score = 43 (15.1 bits), Expect = 7.6e-43, Sum P(2) = 7.6e-43
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 87 PLGTAIHNI 95
>gi|11022829|gb|AAG26144.1| (AF123796) ribosomal protein L2 [Liriodendron
tulipifera]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 435 (153.1 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 81/88 (92%), Positives = 83/88 (94%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITAGHRGGGHKRLYRKIDFRRNEK+ GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITAGHRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTIVSGTEVPISMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|9081961|gb|AAF82677.1| (AF188855) ribosomal protein L2 [Nymphaea odorata]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 432 (152.1 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 81/88 (92%), Positives = 83/88 (94%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITA HRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTIVSGTEVPISMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|11022819|gb|AAG26139.1| (AF123791) ribosomal protein L2 [Dioscorea
bulbifera]
Length = 190
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 190
0 50 100 150
Plus Strand HSPs:
Score = 431 (151.7 bits), Expect = 2.6e-42, Sum P(2) = 2.6e-42
Identities = 80/86 (93%), Positives = 82/86 (95%), Frame = +2
Query: 98 AGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRXA 277
AGHRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR A
Sbjct: 1 AGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA 60
Query: 278 IIGDTIVSGTXVPIKMGNALPLTDMP 355
IIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 IIGDTIVSGTEVPISMGNALPLTDMP 86
Score = 43 (15.1 bits), Expect = 2.6e-42, Sum P(2) = 2.6e-42
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 86 PLGTAIHNI 94
>gi|11022811|gb|AAG26135.1| (AF123787) ribosomal protein L2 [Cabomba
caroliniana]
Length = 200
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 426 (150.0 bits), Expect = 8.6e-42, Sum P(2) = 8.6e-42
Identities = 80/88 (90%), Positives = 82/88 (93%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITA HRGGGHKRLYRKIDFRRNE +I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR
Sbjct: 1 ITARHRGGGHKRLYRKIDFRRNEXDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
AIIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 GAIIGDTIVSGTEVPISMGNALPLTDMP 88
Score = 43 (15.1 bits), Expect = 8.6e-42, Sum P(2) = 8.6e-42
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|11022813|gb|AAG26136.1| (AF123788) ribosomal protein L2 [Calycanthus
floridus]
Length = 199
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 79/86 (91%), Positives = 81/86 (94%), Frame = +2
Query: 98 AGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRXA 277
A HRGGGHKRLYRKIDFRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR A
Sbjct: 1 ARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGA 60
Query: 278 IIGDTIVSGTXVPIKMGNALPLTDMP 355
IIGDTIVSGT VPI MGNALPLTDMP
Sbjct: 61 IIGDTIVSGTEVPISMGNALPLTDMP 86
Score = 43 (15.1 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 86 PLGTAIHNI 94
>gi|6093986|sp|O62954|RK2_PICAB CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
>gi|7440635|pir||T11810 ribosomal protein L2 - Norway spruce
chloroplast >gi|2959586|gb|AAC95500.1| (U92462) ribosomal protein
L2 [Picea abies]
Length = 275
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 275
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 42..275
PRODOM PD002637: RL2(17) RK2(9) 2..48
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 50..113
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 116..273
__________________
Plus Strand HSPs:
Score = 422 (148.6 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
Identities = 77/116 (66%), Positives = 95/116 (81%), Frame = +2
Query: 8 DSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVT 187
D +V+ +P+ L GQH CG RN RGIITA HRGGGHKRLYR+IDFRR++++I G+IVT
Sbjct: 22 DGRVQLDPQKKLTSGQHHCGS-RNGRGIITARHRGGGHKRLYRQIDFRRDKEHISGKIVT 80
Query: 188 IEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
IEYDPNR+AYIC +HY +G+K YILHPR +IGDTI+SG PI +GNALPLT+MP
Sbjct: 81 IEYDPNRSAYICKVHYKNGDKMYILHPRGVMIGDTILSGPKAPISIGNALPLTNMP 136
Score = 43 (15.1 bits), Expect = 2.3e-41, Sum P(2) = 2.3e-41
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 136 PLGTAIHNI 144
>gi|11466745 ref|NP_039341.1| ORF203 [Marchantia polymorpha]
>gi|132858|sp|P06378|RK2_MARPO CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
>gi|71085|pir||R5LV2 ribosomal protein L2 - liverwort (Marchantia
polymorpha) chloroplast >gi|456520|emb|CAA28127.1| (X04465) ORF203
[Marchantia polymorpha]
Length = 277
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | 277
0 50 100 150 200 250
Plus Strand HSPs:
Score = 391 (137.6 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 75/116 (64%), Positives = 88/116 (75%), Frame = +2
Query: 8 DSQVKSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVT 187
D VK P+ L Y +H KGRN RGIIT+ HRGGGHKRLYRKIDF+RN+K I G+I T
Sbjct: 22 DEIVKCQPQKKLTYNKH-IKKGRNNRGIITSQHRGGGHKRLYRKIDFQRNKKYITGKIKT 80
Query: 188 IEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
IEYDPNRN YICLI+Y DGEK+YIL+PR + DTI+S PI +GN LPLT+MP
Sbjct: 81 IEYDPNRNTYICLINYEDGEKRYILYPRGIKLDDTIISSEEAPILIGNTLPLTNMP 136
Score = 45 (15.8 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 9/13 (69%), Positives = 9/13 (69%), Frame = +3
Query: 354 PLGXAIHNIXNPP 392
PLG AIHNI P
Sbjct: 136 PLGTAIHNIEITP 148
>gi|11022825|gb|AAG26142.1| (AF123794) ribosomal protein L2 [Illicium
parviflorum]
Length = 185
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 185
0 50 100 150
Plus Strand HSPs:
Score = 377 (132.7 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 71/79 (89%), Positives = 74/79 (93%), Frame = +2
Query: 116 GHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTI 295
GHKRLYRKI+FRRNEK+I GRIVTIEYDPNRNAYICLIHYGDGEK+YILHPR A IGDTI
Sbjct: 1 GHKRLYRKINFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGARIGDTI 60
Query: 296 VSGTXVPIKMGNALPLTDM 352
VSGT VPI MGNALPLTDM
Sbjct: 61 VSGTEVPISMGNALPLTDM 79
Score = 36 (12.7 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 7/8 (87%), Positives = 7/8 (87%), Frame = +3
Query: 357 LGXAIHNI 380
LG AIHNI
Sbjct: 81 LGTAIHNI 88
>gi|8132551|gb|AAF73305.1| (AF188849) ribosomal protein L2 [Zamia furfuracea]
Length = 201
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 354 (124.6 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 66/88 (75%), Positives = 71/88 (80%), Frame = +2
Query: 92 ITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPR 271
ITA HRGGGHKRLYR+IDFRRNEK G IVTIEYDPNR+AYICL+HY +GEK YILHPR
Sbjct: 1 ITARHRGGGHKRLYRQIDFRRNEKYTSGEIVTIEYDPNRSAYICLVHYRNGEKNYILHPR 60
Query: 272 XAIIGDTIVSGTXVPIKMGNALPLTDMP 355
IGDTI SG PI MGNA PLT +P
Sbjct: 61 GVAIGDTITSGLRAPISMGNAPPLTSVP 88
Score = 43 (15.1 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 88 PLGTAIHNI 96
>gi|11465777 ref|NP_053921.1| 50S ribosomal protein L2 [Porphyra purpurea]
>gi|1710466|sp|P51311|RK2_PORPU CHLOROPLAST 50S RIBOSOMAL PROTEIN
L2 >gi|2147049|pir||S73232 ribosomal protein L2, chloroplast - red
alga (Porphyra purpurea) chloroplast >gi|1276777|gb|AAC08197.1|
(U38804) 50S ribosomal protein L2 [Porphyra purpurea]
Length = 294
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | 294
0 50 100 150 200 250
Plus Strand HSPs:
Score = 348 (122.5 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 65/115 (56%), Positives = 84/115 (73%), Frame = +2
Query: 11 SQVKSN-PRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVT 187
S++ ++ P LI H C KGRN RG+IT H+GGGHK+ YR IDF+RN NI ++ +
Sbjct: 22 SEITTDKPEKSLINKHHFC-KGRNNRGVITCRHKGGGHKQRYRLIDFKRNRHNIIAKVAS 80
Query: 188 IEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
IEYDPNRNA I L+HY DGEK+YILHPR +G +VSG PI++GNALPL+ +P
Sbjct: 81 IEYDPNRNARIALLHYLDGEKRYILHPRSLSVGAIVVSGPMAPIEVGNALPLSTIP 136
Score = 43 (15.1 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 8/13 (61%), Positives = 9/13 (69%), Frame = +3
Query: 354 PLGXAIHNIXNPP 392
PLG A+HNI P
Sbjct: 136 PLGTAVHNIELRP 148
>gi|4007868|gb|AAC95308.1| (AF050665) ribosomal protein L2 [Spirogyra maxima]
Length = 277
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 277
0 50 100 150 200 250
Plus Strand HSPs:
Score = 344 (121.1 bits), Expect = 5.6e-33, Sum P(2) = 5.6e-33
Identities = 67/112 (59%), Positives = 82/112 (73%), Frame = +2
Query: 20 KSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYD 199
KS P L + +GRN RG+IT+ HRGGGHKRLYR IDFRR+++ + G I+TIEYD
Sbjct: 26 KSRPEKRLTSKVSK-HQGRNNRGVITSRHRGGGHKRLYRDIDFRRDKQGVNGTILTIEYD 84
Query: 200 PNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
PNRNA ICL Y DGEK+YILH R +IG+ I+SG PI GNALPLT++P
Sbjct: 85 PNRNARICLTSYEDGEKRYILHSRGVMIGNQILSGPDAPIVPGNALPLTNIP 136
Score = 41 (14.4 bits), Expect = 5.6e-33, Sum P(2) = 5.6e-33
Identities = 7/13 (53%), Positives = 9/13 (69%), Frame = +3
Query: 354 PLGXAIHNIXNPP 392
PLG ++HNI P
Sbjct: 136 PLGTSVHNIELQP 148
>gi|3122719|sp|O24692|RL2_SYNP6 50S RIBOSOMAL PROTEIN L2
>gi|2446893|dbj|BAA22452.1| (AB000111) 50S ribosomal protein L2
[Synechococcus sp.]
Length = 287
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): _____________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | | 287
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 42..276
PRODOM PD002637: RL2(17) RK2(9) 3..48
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 50..112
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 116..269
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 218..229
__________________
Plus Strand HSPs:
Score = 347 (122.2 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
Identities = 65/120 (54%), Positives = 88/120 (73%), Frame = +2
Query: 20 KSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYD 199
++ P L+ +HR KGRN RG+IT HRGGGHKRLYR IDF+R+++N+ G+IV+IEYD
Sbjct: 26 RNEPEKSLLVSKHR-RKGRNNRGVITCRHRGGGHKRLYRIIDFKRDKRNVPGKIVSIEYD 84
Query: 200 PNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRXGNT*H 379
PNRNA I L++Y DGEK+YIL P +G I++G PI++GNA+PL ++P G T H
Sbjct: 85 PNRNARISLVYYEDGEKRYILTPAGVHVGTPIIAGDETPIEVGNAMPLQNIPL--GTTVH 142
Score = 37 (13.0 bits), Expect = 7.2e-33, Sum P(2) = 7.2e-33
Identities = 5/9 (55%), Positives = 7/9 (77%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG +HN+
Sbjct: 136 PLGTTVHNV 144
>gi|11467468 ref|NP_043614.1| 50S ribosomal protein L2 [Odontella sinensis]
>gi|1350640|sp|P49545|RK2_ODOSI CHLOROPLAST 50S RIBOSOMAL PROTEIN
L2 >gi|7440622|pir||S78273 ribosomal protein L2, chloroplast -
Odontella sinensis chloroplast >gi|1185163|emb|CAA91646.1| (Z67753)
50S ribosomal protein L2 [Odontella sinensis]
Length = 275
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 275
0 50 100 150 200 250
Plus Strand HSPs:
Score = 335 (117.9 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
Identities = 64/112 (57%), Positives = 76/112 (67%), Frame = +2
Query: 20 KSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYD 199
K+ P LI HR KGRN RG+IT HRGGGHKR YR IDF R + N+ G + IEYD
Sbjct: 26 KTKPEKSLIQKNHR-SKGRNNRGVITIRHRGGGHKRRYRIIDFGRKKHNVEGVVAAIEYD 84
Query: 200 PNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
PNRNA I L+HY DGEK+YILHP +GD +VSG + +GNALPL +P
Sbjct: 85 PNRNARIALLHYTDGEKRYILHPNNLNVGDRVVSGMEAELVIGNALPLEKIP 136
Score = 39 (13.7 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
Identities = 6/9 (66%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG ++HNI
Sbjct: 136 PLGASVHNI 144
>gi|11467006 ref|NP_041913.1| 50S ribosomal protein L2 [Euglena gracilis]
>gi|132855|sp|P19165|RK2_EUGGR CHLOROPLAST 50S RIBOSOMAL PROTEIN L2
>gi|282715|pir||S26081 ribosomal protein L2 - Euglena gracilis
chloroplast >gi|14367|emb|CAA77917.1| (Z11874) ribosomal protein L2
[Euglena gracilis] >gi|415756|emb|CAA50100.1| (X70810) 50S
ribosomal protein L2 [Euglena gracilis] >gi|497698|gb|AAA84224.1|
(M37463) rpl2 gene product [Euglena gracilis]
Length = 277
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 277
0 50 100 150 200 250
Plus Strand HSPs:
Score = 334 (117.6 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 60/112 (53%), Positives = 84/112 (75%), Frame = +2
Query: 20 KSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYD 199
KSNP +L + HR KGRN+RG+IT GGGHKRLYR+I+F+RN+ I G++++IEYD
Sbjct: 26 KSNPEKYLTFFVHR-SKGRNSRGVITCRTLGGGHKRLYRRIEFKRNKLGILGKVISIEYD 84
Query: 200 PNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
PNRNA I LI+Y +G+K YI+HP +G+ I+S PIK+GN+LP++ +P
Sbjct: 85 PNRNARIALIYYKNGDKSYIIHPFDLCVGNNIISDFFSPIKIGNSLPISKIP 136
Score = 39 (13.7 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 7/13 (53%), Positives = 8/13 (61%), Frame = +3
Query: 354 PLGXAIHNIXNPP 392
PLG IHN+ P
Sbjct: 136 PLGTIIHNVEFEP 148
>gi|11022823|gb|AAG26141.1| (AF123793) ribosomal protein L2 [Ginkgo biloba]
Length = 182
Frame 3 hits (HSPs): ____
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
Plus Strand HSPs:
Score = 329 (115.8 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 59/77 (76%), Positives = 68/77 (88%), Frame = +2
Query: 125 RLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSG 304
RLYR+IDFRR+EK+I G+IVTI YDPNR+AY+CL+HYGDGEKKYILHPR IIGDTI+SG
Sbjct: 1 RLYRRIDFRRDEKDISGKIVTIXYDPNRSAYLCLVHYGDGEKKYILHPRGVIIGDTIISG 60
Query: 305 TXVPIKMGNALPLTDMP 355
PI +GNA PLTDMP
Sbjct: 61 PRAPISVGNAPPLTDMP 77
Score = 43 (15.1 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 8/9 (88%), Positives = 8/9 (88%), Frame = +3
Query: 354 PLGXAIHNI 380
PLG AIHNI
Sbjct: 77 PLGTAIHNI 85
>gi|11467776 ref|NP_050827.1| ribosomal protein L2 [Nephroselmis olivacea]
>gi|5880705|gb|AAD54798.1|AF137379_21 (AF137379) ribosomal protein
L2 [Nephroselmis olivacea]
Length = 275
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 275
0 50 100 150 200 250
Plus Strand HSPs:
Score = 323 (113.7 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 60/111 (54%), Positives = 76/111 (68%), Frame = +2
Query: 23 SNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDP 202
S P L + HR +GRN G IT RGGGHKRLYR+IDFRR++ + R+ T+EYDP
Sbjct: 27 STPTKSLTHANHRA-RGRNHSGSITTRWRGGGHKRLYRQIDFRRDKVGVLARVATVEYDP 85
Query: 203 NRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
NR+A I L+HY DG K+YILHP+ IG ++S PI +GNALPL +MP
Sbjct: 86 NRSARIALLHYQDGSKRYILHPQGLAIGAEVMSSPEAPISIGNALPLVNMP 136
Score = 38 (13.4 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
Identities = 7/13 (53%), Positives = 8/13 (61%), Frame = +3
Query: 354 PLGXAIHNIXNPP 392
PLG +HNI P
Sbjct: 136 PLGTEVHNIELRP 148
>gi|11467720 ref|NP_050772.1| ribosomal protein L2 [Guillardia theta]
>gi|3914662|sp|O46897|RK2_GUITH CHLOROPLAST 50S RIBOSOMAL PROTEIN
L2 >gi|3603045|gb|AAC35706.1| (AF041468) ribosomal protein L2
[Guillardia theta]
Length = 275
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | | 275
0 50 100 150 200 250
Plus Strand HSPs:
Score = 331 (116.5 bits), Expect = 6.3e-29, P = 6.3e-29
Identities = 65/128 (50%), Positives = 86/128 (67%), Frame = +2
Query: 20 KSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYD 199
KS P L+ + C GRN RG+IT H+GGGHK+ YR +DF+RN+ +I + ++EYD
Sbjct: 26 KSKPEKSLLRKKLSCA-GRNNRGLITVRHKGGGHKQRYRLVDFKRNKLDIPAIVASVEYD 84
Query: 200 PNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRXGNT*H 379
PNRNA I L+HY DGEK+YILHP+ +GD I SG VPI++GNA+PL ++P G H
Sbjct: 85 PNRNARIALLHYQDGEKRYILHPKKLAVGDKIYSGINVPIEIGNAMPLYNVPL--GTAVH 142
Query: 380 XKS--PSRKG 403
P R G
Sbjct: 143 NVELIPGRGG 152
>gi|7524931 ref|NP_045933.1| 50S ribosomal protein L2 [Chlorella vulgaris]
>gi|3024535|sp|P56367|RK2_CHLVU CHLOROPLAST 50S RIBOSOMAL PROTEIN
L2 >gi|7440617|pir||T07361 ribosomal protein L2 - Chlorella
vulgaris chloroplast >gi|2224525|dbj|BAA58009.1| (AB001684) 50S
ribosomal protein L2 [Chlorella vulgaris]
Length = 275
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | 275
0 50 100 150 200 250
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 8.7e-29, Sum P(2) = 8.7e-29
Identities = 57/96 (59%), Positives = 70/96 (72%), Frame = +2
Query: 68 KGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNRNAYICLIHYGDGE 247
KGRN RGIIT+ HRGGGHKRLYR+IDF R + N+ ++ IEYDPNRNA I L++Y DGE
Sbjct: 41 KGRNNRGIITSRHRGGGHKRLYREIDFARAKVNVPAKVAYIEYDPNRNARIALVNYQDGE 100
Query: 248 KKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
KKYILHP +G TI++ I +GN LPL +P
Sbjct: 101 KKYILHPVGLQVGQTIIASPEASIAIGNCLPLVKIP 136
Score = 39 (13.7 bits), Expect = 8.7e-29, Sum P(2) = 8.7e-29
Identities = 7/13 (53%), Positives = 8/13 (61%), Frame = +3
Query: 354 PLGXAIHNIXNPP 392
PLG +HNI P
Sbjct: 136 PLGTEVHNIELQP 148
>gi|7674262|sp|Q9Z9L1|RL2_BACHD 50S RIBOSOMAL PROTEIN L2
>gi|11276683|pir||T44386 ribosomal protein L2 [imported] - Bacillus
halodurans >gi|4512407|dbj|BAA75274.1| (AB017508) rplB homologue
(identity of 86% to B. subtilis ) [Bacillus halodurans]
>gi|10172749|dbj|BAB03856.1| (AP001507) 50S ribosomal protein L2
[Bacillus halodurans]
Length = 276
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 304 (107.0 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 61/109 (55%), Positives = 77/109 (70%), Frame = +2
Query: 29 PRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNR 208
P L+ H+ G GRN +G +T H+GGGHKR YR IDF+RN+ I GR+ TIEYDPNR
Sbjct: 29 PEKSLLAPLHKKG-GRNNQGKMTVRHQGGGHKRQYRIIDFKRNKDGIPGRVATIEYDPNR 87
Query: 209 NAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
+A I LI+Y DGEK+YIL P+ +G TI SG IK+GNALPL ++P
Sbjct: 88 SANIALINYVDGEKRYILAPKGLKVGMTIESGPEADIKVGNALPLKNIP 136
Score = 38 (13.4 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
Identities = 7/13 (53%), Positives = 8/13 (61%), Frame = +3
Query: 354 PLGXAIHNIXNPP 392
P+G IHNI P
Sbjct: 136 PVGTVIHNIELKP 148
>gi|11466368 ref|NP_038371.1| ribosomal protein L2 [Mesostigma viride]
>gi|7259511|gb|AAF43812.1|AF166114_24 (AF166114) ribosomal protein
L2 [Mesostigma viride]
Length = 276
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 326 (114.8 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 67/128 (52%), Positives = 82/128 (64%), Frame = +2
Query: 20 KSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYD 199
K+NP L Y +HR KGRN RGIIT HRGGGHKRL R IDF R EKNI + +IEYD
Sbjct: 26 KTNPEKSLTYHRHR-SKGRNNRGIITIRHRGGGHKRLCRLIDFTR-EKNIPATVASIEYD 83
Query: 200 PNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMPFRXGNT*H 379
PNRN I L++Y +G K+YI+HPR +G IVS P+ +GN+LPL +P G
Sbjct: 84 PNRNCRIALLYYKNGIKRYIIHPRGLSVGKEIVSSVEAPLSVGNSLPLNKIPLGTGIHNI 143
Query: 380 XKSPSRKG 403
SP + G
Sbjct: 144 ELSPGQGG 151
>gi|2500224|sp|P73317|RL2_SYNY3 50S RIBOSOMAL PROTEIN L2
>gi|7440623|pir||S77499 ribosomal protein L2 - Synechocystis sp.
(strain PCC 6803) >gi|1652424|dbj|BAA17346.1| (D90905) 50S
ribosomal protein L2 [Synechocystis sp.]
Length = 276
Frame 2 hits (HSPs): _____________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 42..276
PRODOM PD002637: RL2(17) RK2(9) 3..48
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 50..112
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 119..273
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 218..229
__________________
Plus Strand HSPs:
Score = 324 (114.1 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 61/112 (54%), Positives = 79/112 (70%), Frame = +2
Query: 20 KSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYD 199
KS P L +H KGRN RG+IT+ HRGGGHK+LYR IDF+RN++NI R+ IEYD
Sbjct: 26 KSKPEKSLTTNRHD-QKGRNNRGVITSRHRGGGHKKLYRIIDFKRNKQNIPARVAAIEYD 84
Query: 200 PNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
PNRNA I L+ Y DGEK+YIL P +G T+++G P ++GN LPL+ +P
Sbjct: 85 PNRNARIALLFYTDGEKRYILAPAGLQVGMTVIAGEEAPFEIGNTLPLSRIP 136
>gi|1173019|sp|P42919|RL2_BACSU 50S RIBOSOMAL PROTEIN L2 (BL2)
>gi|7440626|pir||F69694 ribosomal protein L2 (BL2) rplB - Bacillus
subtilis >gi|786156|dbj|BAA08834.1| (D50302) Ribosomal Protein L2
[Bacillus subtilis] >gi|2632386|emb|CAB11895.1| (Z99104) ribosomal
protein L2 (BL2) [Bacillus subtilis]
Length = 277
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ____________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 277
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM Ribosomal_L2: Ribosomal Proteins L2 41..275
PRODOM PD002637: RL2(17) RK2(9) 1..46
PRODOM PD000954: RL2(32) RK2(18) RM02(4) 49..111
PRODOM PD000953: RL2(32) RK2(18) RM02(5) 114..273
PROSITE RIBOSOMAL_L2: Ribosomal protein L2 signa 218..229
__________________
Plus Strand HSPs:
Score = 302 (106.3 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 58/109 (53%), Positives = 77/109 (70%), Frame = +2
Query: 29 PRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYDPNR 208
P L+ H+ G GRN +G +T H+GGGHKR YR IDF+R++ I GR+ T+EYDPNR
Sbjct: 29 PEKSLLAPLHKKG-GRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNR 87
Query: 209 NAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
+A I LI+Y DGEK+YIL P+ +G I+SG IK+GNALPL ++P
Sbjct: 88 SANIALINYADGEKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIP 136
Score = 37 (13.0 bits), Expect = 3.7e-28, Sum P(2) = 3.7e-28
Identities = 6/13 (46%), Positives = 8/13 (61%), Frame = +3
Query: 354 PLGXAIHNIXNPP 392
P+G +HNI P
Sbjct: 136 PVGTVVHNIELKP 148
>gi|11467342 ref|NP_043199.1| ribosomal protein L2 [Cyanophora paradoxa]
>gi|132852|sp|P15764|RK2_CYAPA CYANELLE 50S RIBOSOMAL PROTEIN L2
>gi|71084|pir||R5KT2 ribosomal protein L2, cyanelle - Cyanophora
paradoxa cyanelle >gi|11404|emb|CAA35537.1| (X17498) L2 ribosomal
protein (AA 1-275) [Cyanophora paradoxa] >gi|1016143|gb|AAA81230.1|
(U30821) ribosomal protein L2 [Cyanophora paradoxa]
Length = 275
Frame 2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 275
0 50 100 150 200 250
Plus Strand HSPs:
Score = 323 (113.7 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 61/112 (54%), Positives = 80/112 (71%), Frame = +2
Query: 20 KSNPRNHLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKNIYGRIVTIEYD 199
KS P L + +HR KGRN RGIIT H+GGG KRLYR IDF+R+ K + ++ IEYD
Sbjct: 26 KSEPEKSLTFLKHR-KKGRNNRGIITTAHKGGGSKRLYRIIDFKRDLKLVPAKVAAIEYD 84
Query: 200 PNRNAYICLIHYGDGEKKYILHPRXAIIGDTIVSGTXVPIKMGNALPLTDMP 355
PNRNA I L+HY +GEK YILH R +G+ + SG PI++GN+LPL+++P
Sbjct: 85 PNRNARIALLHYQNGEKGYILHARGLAVGNMVYSGPNAPIEVGNSLPLSEIP 136
WARNING: HSPs involving 103 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.354 0.163 0.556
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.329 0.148 0.468
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.365 0.161 0.699
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.342 0.153 0.509
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.356 0.164 0.592
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.357 0.164 0.671
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 136 132 10. 72 3 12 22 0.11 33
30 0.096 36
+2 0 137 133 10. 72 3 12 22 0.11 33
30 0.097 36
+1 0 137 134 10. 73 3 12 22 0.11 33
30 0.098 36
-1 0 137 134 10. 73 3 12 22 0.11 33
30 0.098 36
-2 0 137 133 10. 72 3 12 22 0.11 33
30 0.097 36
-3 0 136 133 10. 72 3 12 22 0.11 33
30 0.097 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 153
No. of states in DFA: 591 (58 KB)
Total size of DFA: 182 KB (192 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 139.87u 1.18s 141.05t Elapsed: 00:00:26
Total cpu time: 139.95u 1.19s 141.14t Elapsed: 00:00:26
Start: Wed Oct 3 11:23:56 2001 End: Wed Oct 3 11:24:22 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000