BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract


RepeatMasker repeats found in sequence:
No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  M1C12_CONSENSUS
        (490 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 4 Sequences     : less than 4 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 954 232 |==========================================================
   6310 722 146 |====================================
   3980 576 150 |=====================================
   2510 426 147 |====================================
   1580 279  70 |=================
   1000 209  54 |=============
    631 155  33 |========
    398 122  34 |========
    251  88  18 |====
    158  70  10 |==
    100  60   7 |=
   63.1  53   5 |=
   39.8  48   4 |=
   25.1  44   2 |:
   15.8  42   2 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 40  <<<<<<<<<<<<<<<<<
   10.0  40   2 |:
   6.31  38   1 |:
   3.98  37   0 |
   2.51  37   0 |
   1.58  37   0 |
   1.00  37   0 |
   0.63  37   0 |
   0.40  37   0 |
   0.25  37   0 |
   0.16  37   0 |
   0.10  37   0 |
  0.063  37   0 |
  0.040  37   0 |
  0.025  37   1 |:
  0.016  36   0 |
  0.010  36   0 |
 0.0063  36   1 |:
 0.0040  35   0 |
 0.0025  35   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|12620883|gb|AAG61121.1|AF329935_1(AF329935) ribulo... +3   475  3.4e-44   1
gi|3687652|gb|AAC62207.1|(AF047352) rubisco activase ... +3   473  5.6e-44   1
gi|12620881|gb|AAG61120.1|(AF329934) ribulose-1,5-bis... +3   465  3.9e-43   1
gi|3914605|sp|Q40281|RCA_MALDORIBULOSE BISPHOSPHATE C... +3   461  1.0e-42   1
gi|10720248|sp|O64981|RCA_PHAVURIBULOSE BISPHOSPHATE ... +3   454  5.8e-42   1
gi|12643259|sp|P10896|RCA_ARATHRIBULOSE BISPHOSPHATE ... +3   453  7.4e-42   1
gi|7438144|pir||T01003ribulose-bisphosphate carboxyla... +3   453  7.4e-42   1
gi|10720249|sp|O98997|RCA_PHAAURIBULOSE BISPHOSPHATE ... +3   445  5.2e-41   1
gi|8918359|dbj|BAA97583.1|(AB034698) RuBisCO activase... +3   444  6.6e-41   1
gi|8918361|dbj|BAA97584.1|(AB034748) RuBisCO activase... +3   444  6.6e-41   1
gi|100614|pir||B23703ribulose-bisphosphate carboxylas... +3   441  1.4e-40   1
gi|100615|pir||C23703ribulose-bisphosphate carboxylas... +3   441  1.4e-40   1
gi|7438146|pir||T06177ribulose-bisphosphate carboxyla... +3   441  1.4e-40   1
gi|12643756|sp|Q40073|RCAA_HORVURIBULOSE BISPHOSPHATE... +3   441  1.4e-40   1
gi|445628|prf||1909374ARuBisCO activase [Nicotiana ta... +3   441  1.4e-40   1
gi|12643757|sp|Q40460|RCA1_TOBACRIBULOSE BISPHOSPHATE... +3   441  1.4e-40   1
gi|266893|sp|Q01587|RCA_CUCSARIBULOSE BISPHOSPHATE CA... +3   440  1.8e-40   1
gi|7960277|gb|AAF71272.1|AF251264_1(AF251264) ribulos... +3   440  1.8e-40   1
gi|10720247|sp|O49074|RCA_LYCPNRIBULOSE BISPHOSPHATE ... +3   435  5.9e-40   1
gi|12643758|sp|Q40565|RCA2_TOBACRIBULOSE BISPHOSPHATE... +3   435  5.9e-40   1
gi|6967045|emb|CAB72439.1|(AJ271896) rubisco activase... +3   433  9.7e-40   1
gi|3914603|sp|P93431|RCA_ORYSARIBULOSE BISPHOSPHATE C... +3   433  9.7e-40   1
gi|81660|pir||S04048ribulose-bisphosphate carboxylase... +3   432  1.2e-39   1
gi|10720253|sp|Q42450|RCAB_HORVURIBULOSE BISPHOSPHATE... +3   431  1.6e-39   1
gi|9832973|gb|AAC97932.2|(AF084478) ribulose-1,5-bisp... +3   417  4.8e-38   1
gi|10720252|sp|Q9ZT00|RCA_MAIZERIBULOSE BISPHOSPHATE ... +3   417  4.8e-38   1
gi|12643998|sp|P10871|RCA_SPIOLRIBULOSE BISPHOSPHATE ... +3   401  2.4e-36   1
gi|4261547|gb|AAD13841.1|S45033_11(S45033) rubisco ac... +3   401  2.4e-36   1
gi|81488|pir||A31082ribulose-bisphosphate carboxylase... +3   395  1.0e-35   1
gi|3687676|gb|AAC62215.1|(AF052424) rubisco activase ... +3   353  2.9e-31   1
gi|1805719|emb|CAA71667.1|(Y10657) Rubisco activase [... +3   334  3.0e-29   1
gi|132167|sp|P23489|RCA_CHLRERIBULOSE BISPHOSPHATE CA... +3   334  3.0e-29   1
gi|10719703|gb|AAG22094.1|(AF305876) ribulose 1,5-bis... +3   324  3.4e-28   1
gi|10720250|sp|Q06721|RCA_ANASCRIBULOSE BISPHOSPHATE ... +3   228  3.9e-24   2
gi|2130074|pir||S65513ribulose-bisphosphate carboxyla... +1    90  0.0022    1
gi|5903100|gb|AAD55658.1|AC008017_31(AC008017) Highly... +1    68  0.0043    3
gi|482299|pir||A37458ribulose-bisphosphate carboxylas... +3    82  0.018     1
gi|7438149|pir||A58840ribulose-bisphosphate carboxyla... +3    62  0.98      1
gi|5835165ref|NP_008229.1|ATP8_10553 ATP synthase F0 ... +1    59  0.9998    1
gi|7484791|pir||T05549adenylate kinase homolog F24A6.... +3    77  0.9999    1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|12620883            |____________________________________________      
gi|3687652             |____________________________________________      
gi|12620881            |____________________________________________      
gi|3914605             |____________________________________________      
gi|10720248            |____________________________________________      
gi|12643259            |____________________________________________      
gi|7438144             |____________________________________________      
gi|10720249            |____________________________________________      
gi|8918359             |____________________________________________      
gi|8918361             |____________________________________________      
gi|100614              |____________________________________________      
gi|100615              |____________________________________________      
gi|7438146             |____________________________________________      
gi|12643756            |____________________________________________      
gi|445628              |____________________________________________      
gi|12643757            |____________________________________________      
gi|266893              |____________________________________________      
gi|7960277             |____________________________________________      
gi|10720247            |____________________________________________      
gi|12643758            |____________________________________________      
gi|6967045             |____________________________________________      
gi|3914603             |____________________________________________      
gi|81660               |____________________________________________      
gi|10720253            |____________________________________________      
gi|9832973             |____________________________________________      
gi|10720252            |____________________________________________      
gi|12643998            |____________________________________________      
gi|4261547             |____________________________________________      
gi|81488               |____________________________________________      
gi|3687676             |        ____________________________________      
gi|1805719             |____________________________________________      
gi|132167              |____________________________________________      
gi|10719703            |        ____________________________________      
gi|10720250            |        _____________________                     
gi|5903100             |                        _____                     
gi|482299              |                     ________                     
gi|7438149             |______                                            
gi|7484791             |   __________________________                     
Prosite Hits:                                               __________    
                        __________________________________________________
Query sequence:        |              |               |              |    | 164
                       0             50             100            150
__________________
Prosite hits:
   LEUCINE_ZIPPER       Leucine zipper pattern.                  122..143
   BPD_TRANSP_INN_MEMBR Binding-protein-dependent transport syst 123..151
__________________


Locus_ID                Frame 2 Hits
gi|10720250            |                                   ____________   
gi|5903100             |                                     __________   
                        __________________________________________________
Query sequence:        |              |               |              |    | 164
                       0             50             100            150


Locus_ID                Frame 1 Hits
gi|12620883            |                            __________            
gi|3687652             |                            __________            
gi|12620881            |                            __________            
gi|3914605             |                            __________            
gi|10720248            |                            __________            
gi|12643259            |                            __________            
gi|7438144             |                            __________            
gi|10720249            |                            __________            
gi|8918359             |                            __________            
gi|8918361             |                            __________            
gi|100614              |                            __________            
gi|100615              |                            __________            
gi|7438146             |                            __________            
gi|12643756            |                            __________            
gi|445628              |                            __________            
gi|12643757            |                            __________            
gi|266893              |                            __________            
gi|7960277             |                            __________            
gi|10720247            |                            __________            
gi|12643758            |                            __________            
gi|6967045             |                            __________            
gi|3914603             |                            __________            
gi|81660               |                            __________            
gi|10720253            |                            __________            
gi|9832973             |                            __________            
gi|10720252            |                            __________            
gi|12643998            |                            __________            
gi|4261547             |                            __________            
gi|81488               |                            __________            
gi|3687676             |                            __________            
gi|1805719             |                            __________            
gi|132167              |                            __________            
gi|10719703            |                            __________            
gi|10720250            |                             _________            
gi|2130074             |                    _______________               
gi|5903100             |                             ________             
gi|5835165             |     ___________                                  
                        __________________________________________________
Query sequence:        |              |               |              |    | 164
                       0             50             100            150


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|12620883|gb|AAG61121.1|AF329935_1  (AF329935) ribulose-1,5-bisphosphate
            carboxylase/oxygenase activase 2 [Gossypium hirsutum]
            Length = 435

Frame  3 hits (HSPs):          _________________                          
Frame  1 hits (HSPs):                     ____                            
                        __________________________________________________
Database sequence:     |                 |                |               | 435
                       0               150              300

  Plus Strand HSPs:

 Score = 475 (167.2 bits), Expect = 3.4e-44, P = 3.4e-44
 Identities = 97/142 (68%), Positives = 107/142 (75%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTHYA+M SY Y+S GLK YNLDNNMDGFYIAPAFMDKLVVHISKNFM+LPNIKVPLILG
Sbjct:    64 GTHYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILG 123

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   124 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 183

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   184 CALFIND-LDAGAGRMGGTTQY 204

 Score = 118 (41.5 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 25/30 (83%), Positives = 26/30 (86%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREAA  IKKGKM C+L
Sbjct:   158 GNAGEPAKLIRQRYREAADIIKKGKM-CAL 186


 >gi|3687652|gb|AAC62207.1|  (AF047352) rubisco activase precursor [Datisca
            glomerata]
            Length = 373

Frame  3 hits (HSPs):                ____________________                 
Frame  1 hits (HSPs):                             ____                    
                        __________________________________________________
Database sequence:     |                   |                    |         | 373
                       0                 150                  300

  Plus Strand HSPs:

 Score = 473 (166.5 bits), Expect = 5.6e-44, P = 5.6e-44
 Identities = 99/142 (69%), Positives = 108/142 (76%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTHYA+M SY YLSTGL+QY LDNNMDGFYIAPAFMDKLVVHI+KNFMTLPNIKVPLILG
Sbjct:   104 GTHYAVMSSYEYLSTGLRQY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILG 162

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   163 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRCREAADIIKKGKM 222

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG LGGTT Y
Sbjct:   223 SCLFIND-LDAGAGRLGGTTQY 243

 Score = 111 (39.1 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 23/28 (82%), Positives = 23/28 (82%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR R REAA  IKKGKM C
Sbjct:   197 GNAGEPAKLIRQRCREAADIIKKGKMSC 224


 >gi|12620881|gb|AAG61120.1|  (AF329934) ribulose-1,5-bisphosphate
            carboxylase/oxygenase activase 1 [Gossypium hirsutum]
            Length = 438

Frame  3 hits (HSPs):              _________________                      
Frame  1 hits (HSPs):                         ____                        
                        __________________________________________________
Database sequence:     |                 |                |               | 438
                       0               150              300

  Plus Strand HSPs:

 Score = 465 (163.7 bits), Expect = 3.9e-43, P = 3.9e-43
 Identities = 94/142 (66%), Positives = 107/142 (75%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTHYA+M SY Y+S GL+ Y+LDNNMDGFYIAPAFMDKLVVHI+KN+MTLPNIKVPLILG
Sbjct:   106 GTHYAVMSSYEYISQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILG 165

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   166 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 225

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   226 CCLFIND-LDAGAGRMGGTTQY 246

 Score = 120 (42.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   200 GNAGEPAKLIRQRYREAADIIKKGKMCC 227


 >gi|3914605|sp|Q40281|RCA_MALDO  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|541930|pir||S39551 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-) - apple tree >gi|415852|emb|CAA79857.1| (Z21794)
            ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus
            domestica]
            Length = 437

Frame  3 hits (HSPs):              _________________                      
Frame  1 hits (HSPs):                         ____                        
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                 |                |               | 437
                       0               150              300
__________________

Annotated Domains:
   Entrez               np-binding site: ATP (POTENTIAL).        165..172
   PRODOM               PD007760: RCA(3)                         1..35
   PRODOM               PD003963: RCA(6)                         37..129
   PRODOM               PD003741: RCA(6)                         131..415
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  165..172
__________________


  Plus Strand HSPs:

 Score = 461 (162.3 bits), Expect = 1.0e-42, P = 1.0e-42
 Identities = 94/142 (66%), Positives = 107/142 (75%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH+AIM SY Y+STGL+QYN DNNMDG+YIAPAFMDKLVVHI+KNFMTLPN+KVPLILG
Sbjct:   103 GTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILG 162

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKM I+PIMMSAGELES      +K  +     +    ++GK 
Sbjct:   163 IWGGKGQGKSFQCELVFAKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKM 222

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG LGGTT Y
Sbjct:   223 CALFIND-LDAGAGRLGGTTQY 243

 Score = 115 (40.5 bits), Expect = 4.1e-05, P = 4.1e-05
 Identities = 24/30 (80%), Positives = 26/30 (86%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREAA  I+KGKM C+L
Sbjct:   197 GNAGEPAKLIRQRYREAADIIRKGKM-CAL 225


 >gi|10720248|sp|O64981|RCA_PHAVU  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|7438145|pir||T10815 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-) Rca1 - kidney bean >gi|3033513|gb|AAC12868.1|
            (AF041068) rubisco activase [Phaseolus vulgaris]
            Length = 441

Frame  3 hits (HSPs):               ________________                      
Frame  1 hits (HSPs):                         ____                        
                        __________________________________________________
Database sequence:     |                |                |                | 441
                       0              150              300

  Plus Strand HSPs:

 Score = 454 (159.8 bits), Expect = 5.8e-42, P = 5.8e-42
 Identities = 92/142 (64%), Positives = 106/142 (74%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTHYA++ S+ YLS GL+QYN DN  DGFYIAPAF+DKLVVHI+KNFMTLPNIKVPLILG
Sbjct:   107 GTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILG 166

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             +WGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   167 VWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKM 226

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
              +L  +  L   AG LGGTT Y
Sbjct:   227 CVLFIND-LDAGAGRLGGTTQY 247

 Score = 112 (39.4 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 24/30 (80%), Positives = 25/30 (83%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREA+  IKKGKM C L
Sbjct:   201 GNAGEPAKLIRQRYREASDLIKKGKM-CVL 229


 >gi|12643259|sp|P10896|RCA_ARATH  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|7438143|pir||T01002 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-) T5I7.3, splice form 1 - Arabidopsis thaliana
            >gi|166834|gb|AAA20202.1| (M86720) ribulose bisphosphate
            carboxylase/oxygenase activase [Arabidopsis thaliana]
            >gi|2642155|gb|AAB87122.1| (AC003000) Rubisco activase [Arabidopsis
            thaliana] >gi|11762250|gb|AAG40401.1|AF325049_1 (AF325049)
            At2g39730 [Arabidopsis thaliana]
            Length = 474

Frame  3 hits (HSPs):             ________________                        
Frame  1 hits (HSPs):                       ____                          
                        __________________________________________________
Database sequence:     |               |               |               |  | 474
                       0             150             300             450

  Plus Strand HSPs:

 Score = 453 (159.5 bits), Expect = 7.4e-42, P = 7.4e-42
 Identities = 92/142 (64%), Positives = 106/142 (74%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH+A++ SY Y+S GL+QYNLDN MDGFYIAPAFMDKLVVHI+KNF+TLPNIKVPLILG
Sbjct:   103 GTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILG 162

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELV AKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   163 IWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKM 222

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   223 CCLFIND-LDAGAGRMGGTTQY 243

 Score = 120 (42.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   197 GNAGEPAKLIRQRYREAADLIKKGKMCC 224


 >gi|7438144|pir||T01003  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            T5I7.3, splice form 2 - Arabidopsis thaliana
            >gi|166835|gb|AAA20203.1| (M86720) ribulose bisphosphate
            carboxylase/oxygenase activase [Arabidopsis thaliana]
            >gi|2642170|gb|AAB87137.1| (AC003000) Rubsico activase [Arabidopsis
            thaliana]
            Length = 446

Frame  3 hits (HSPs):              _________________                      
Frame  1 hits (HSPs):                        _____                        
                        __________________________________________________
Database sequence:     |                |                |                | 446
                       0              150              300

  Plus Strand HSPs:

 Score = 453 (159.5 bits), Expect = 7.4e-42, P = 7.4e-42
 Identities = 92/142 (64%), Positives = 106/142 (74%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH+A++ SY Y+S GL+QYNLDN MDGFYIAPAFMDKLVVHI+KNF+TLPNIKVPLILG
Sbjct:   103 GTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILG 162

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELV AKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   163 IWGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKM 222

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   223 CCLFIND-LDAGAGRMGGTTQY 243

 Score = 120 (42.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   197 GNAGEPAKLIRQRYREAADLIKKGKMCC 224


 >gi|10720249|sp|O98997|RCA_PHAAU  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|8954287|gb|AAD20019.2| (AF126870) rubisco activase [Vigna
            radiata]
            Length = 439

Frame  3 hits (HSPs):               ________________                      
Frame  1 hits (HSPs):                         ____                        
                        __________________________________________________
Database sequence:     |                |                 |               | 439
                       0              150               300

  Plus Strand HSPs:

 Score = 445 (156.6 bits), Expect = 5.2e-41, P = 5.2e-41
 Identities = 95/142 (66%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTHYA+M SY YLSTGL+Q  LDN  DGFYIAPAF+DKLVVHI+KNFMTLPNIKVPLILG
Sbjct:   107 GTHYAVMSSYEYLSTGLRQ--LDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILG 164

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +     +GK 
Sbjct:   165 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKM 224

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG LGGTT Y
Sbjct:   225 CALFIND-LDAGAGRLGGTTQY 245

 Score = 112 (39.4 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 24/30 (80%), Positives = 25/30 (83%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREAA  I KGKM C+L
Sbjct:   199 GNAGEPAKLIRQRYREAADLIAKGKM-CAL 227


 >gi|8918359|dbj|BAA97583.1|  (AB034698) RuBisCO activase large isoform precursor
            [Oryza sativa]
            Length = 466

Frame  3 hits (HSPs):            _________________                        
Frame  1 hits (HSPs):                       ___                           
                        __________________________________________________
Database sequence:     |               |                |               | | 466
                       0             150              300             450

  Plus Strand HSPs:

 Score = 444 (156.3 bits), Expect = 6.6e-41, P = 6.6e-41
 Identities = 92/142 (64%), Positives = 103/142 (72%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY YLS GL+ Y+ DN M GFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG
Sbjct:    94 GTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 153

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   214 CCLFIND-LDAGAGRMGGTTQY 234

 Score = 120 (42.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   188 GNAGEPAKLIRQRYREAADIIKKGKMCC 215


 >gi|8918361|dbj|BAA97584.1|  (AB034748) RuBisCO activase small isoform precursor
            [Oryza sativa]
            Length = 433

Frame  3 hits (HSPs):             _________________                       
Frame  1 hits (HSPs):                        ____                         
                        __________________________________________________
Database sequence:     |                 |                |               | 433
                       0               150              300

  Plus Strand HSPs:

 Score = 444 (156.3 bits), Expect = 6.6e-41, P = 6.6e-41
 Identities = 92/142 (64%), Positives = 103/142 (72%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY YLS GL+ Y+ DN M GFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG
Sbjct:    94 GTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 153

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 213

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   214 CCLFIND-LDAGAGRMGGTTQY 234

 Score = 120 (42.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   188 GNAGEPAKLIRQRYREAADIIKKGKMCC 215


 >gi|100614|pir||B23703  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            A long form precursor - barley (fragment) >gi|167089|gb|AAA62701.1|
            (M55446) ribulose 1,5-bisphosphate carboxylase activase [Hordeum
            vulgare]
            Length = 426

Frame  3 hits (HSPs):         _________________                           
Frame  1 hits (HSPs):                    ____                             
Annotated Domains:                   __                                   
                        __________________________________________________
Database sequence:     |                 |                 |              | 426
                       0               150               300
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  117..124
__________________


  Plus Strand HSPs:

 Score = 441 (155.2 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 89/142 (62%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY Y+S GL++Y+ DN M GFYIAPAFMDKLVVH+SKNFMTLPNIK+PLILG
Sbjct:    55 GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILG 114

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   115 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKM 174

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   175 CCLFIND-LDAGAGRMGGTTQY 195

 Score = 120 (42.2 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   149 GNAGEPAKLIRQRYREAADMIKKGKMCC 176


 >gi|100615|pir||C23703  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            A short form precursor - barley >gi|167091|gb|AAA62702.1| (M55447)
            ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
            Length = 427

Frame  3 hits (HSPs):             __________________                      
Frame  1 hits (HSPs):                        ____                         
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                 |              | 427
                       0               150               300
__________________

Annotated Domains:
   DOMO                 DM01630:                                 2..89
   DOMO                 DM01541:                                 91..285
   DOMO                 DM01443: RUBISCOACTIVASECHAIN            287..425
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  155..162
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  31..38
__________________


  Plus Strand HSPs:

 Score = 441 (155.2 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 89/142 (62%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY Y+S GL++Y+ DN M GFYIAPAFMDKLVVH+SKNFMTLPNIK+PLILG
Sbjct:    93 GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILG 152

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   153 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKM 212

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   213 CCLFIND-LDAGAGRMGGTTQY 233

 Score = 120 (42.2 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   187 GNAGEPAKLIRQRYREAADMIKKGKMCC 214


 >gi|7438146|pir||T06177  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            A1 - barley >gi|167096|gb|AAA63163.1| (M55449) ribulose
            1,5-bisphosphate carboxylase activase [Hordeum vulgare]
            Length = 427

Frame  3 hits (HSPs):             __________________                      
Frame  1 hits (HSPs):                        ____                         
                        __________________________________________________
Database sequence:     |                 |                 |              | 427
                       0               150               300

  Plus Strand HSPs:

 Score = 441 (155.2 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 89/142 (62%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY Y+S GL++Y+ DN M GFYIAPAFMDKLVVH+SKNFMTLPNIK+PLILG
Sbjct:    93 GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILG 152

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   153 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKM 212

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   213 CCLFIND-LDAGAGRMGGTTQY 233

 Score = 120 (42.2 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   187 GNAGEPAKLIRQRYREAADMIKKGKMCC 214


 >gi|12643756|sp|Q40073|RCAA_HORVU  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE A, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE A) (RA A)
            >gi|7438147|pir||T06176 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-) A2 - barley >gi|167097|gb|AAA63164.1| (M55449)
            ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
            Length = 464

Frame  3 hits (HSPs):            _________________                        
Frame  1 hits (HSPs):                       ___                           
                        __________________________________________________
Database sequence:     |                |               |               | | 464
                       0              150             300             450

  Plus Strand HSPs:

 Score = 441 (155.2 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 89/142 (62%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY Y+S GL++Y+ DN M GFYIAPAFMDKLVVH+SKNFMTLPNIK+PLILG
Sbjct:    93 GTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILG 152

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   153 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKM 212

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   213 CCLFIND-LDAGAGRMGGTTQY 233

 Score = 120 (42.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   187 GNAGEPAKLIRQRYREAADMIKKGKMCC 214


 >gi|445628|prf||1909374A  RuBisCO activase [Nicotiana tabacum]
            Length = 383

Frame  3 hits (HSPs):         ___________________                         
Frame  1 hits (HSPs):                     ____                            
                        __________________________________________________
Database sequence:     |                   |                   |          | 383
                       0                 150                 300

  Plus Strand HSPs:

 Score = 441 (155.2 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 89/142 (62%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH+A++ SY Y+S GL+QYNLDN +DGFYIAPAFMDKLVVHI+KNF+ LPNIKVPLILG
Sbjct:    48 GTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILG 107

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVF KMGINPIMMSAGELES      +K  +     +    ++G  
Sbjct:   108 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 167

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   168 CCLFIND-LDAGAGRMGGTTQY 188

 Score = 112 (39.4 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  I+KG M C
Sbjct:   142 GNAGEPAKLIRQRYREAAEIIRKGNMCC 169


 >gi|12643757|sp|Q40460|RCA1_TOBAC  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE 1, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE 1) (RA 1)
            >gi|1006835|gb|AAA78277.1| (U35111) rubisco activase precursor
            [Nicotiana tabacum]
            Length = 442

Frame  3 hits (HSPs):              _________________                      
Frame  1 hits (HSPs):                         ____                        
                        __________________________________________________
Database sequence:     |                |                |                | 442
                       0              150              300

  Plus Strand HSPs:

 Score = 441 (155.2 bits), Expect = 1.4e-40, P = 1.4e-40
 Identities = 89/142 (62%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH+A++ SY Y+S GL+QYNLDN +DGFYIAPAFMDKLVVHI+KNF+ LPNIKVPLILG
Sbjct:   107 GTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILG 166

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVF KMGINPIMMSAGELES      +K  +     +    ++G  
Sbjct:   167 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 226

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   227 CCLFIND-LDAGAGRMGGTTQY 247

 Score = 112 (39.4 bits), Expect = 8.7e-05, P = 8.7e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  I+KG M C
Sbjct:   201 GNAGEPAKLIRQRYREAAEIIRKGNMCC 228


 >gi|266893|sp|Q01587|RCA_CUCSA  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|322416|pir||S28172 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-) - cucumber >gi|18284|emb|CAA47906.1| (X67674) rubisco
            activase [Cucumis sativus]
            Length = 413

Frame  3 hits (HSPs):              __________________                     
Frame  1 hits (HSPs):                          ____                       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 413
                       0                150               300
__________________

Annotated Domains:
   DOMO                 DM01630:                                 1..96
   DOMO                 DM01541:                                 98..292
   DOMO                 DM01443: RUBISCOACTIVASECHAIN            294..412
   Entrez               np-binding site: ATP (BY SIMILARITY).    162..169
   PRODOM               PD133488: RCA_CUCSA                      1..34
   PRODOM               PD003963: RCA(6)                         36..126
   PRODOM               PD003741: RCA(6)                         128..409
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  162..169
__________________


  Plus Strand HSPs:

 Score = 440 (154.9 bits), Expect = 1.8e-40, P = 1.8e-40
 Identities = 89/142 (62%), Positives = 103/142 (72%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY Y+S GL+ Y+ DNN+DGFYIAPAFMDKL VHI KNF+TLPNIKVPLILG
Sbjct:   100 GTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILG 159

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             +WGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   160 VWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 219

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG LGGTT Y
Sbjct:   220 CCLFIND-LDAGAGRLGGTTQY 240

 Score = 120 (42.2 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   194 GNAGEPAKLIRQRYREAADIIKKGKMCC 221


 >gi|7960277|gb|AAF71272.1|AF251264_1  (AF251264) ribulose bisphosphate
            carboxylase activase B [Triticum aestivum]
            Length = 432

Frame  3 hits (HSPs):              _________________                      
Frame  1 hits (HSPs):                        _____                        
                        __________________________________________________
Database sequence:     |                 |                |               | 432
                       0               150              300

  Plus Strand HSPs:

 Score = 440 (154.9 bits), Expect = 1.8e-40, P = 1.8e-40
 Identities = 89/142 (62%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH AI+ SY Y+S GL++Y+ DN MDG YIAPAFMDKL+VH++KNFMTLPNIKVPLILG
Sbjct:    97 GTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILG 156

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:   157 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 216

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   217 CCLFIND-LDAGAGRMGGTTQY 237

 Score = 120 (42.2 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 24/28 (85%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  IKKGKM C
Sbjct:   191 GNAGEPAKLIRQRYREAADIIKKGKMCC 218


 >gi|10720247|sp|O49074|RCA_LYCPN  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|2707330|gb|AAC15236.1| (AF037361) rubisco activase
            [Lycopersicon pennellii]
            Length = 459

Frame  3 hits (HSPs):              ________________                       
Frame  1 hits (HSPs):                        ____                         
                        __________________________________________________
Database sequence:     |                |               |               | | 459
                       0              150             300             450

  Plus Strand HSPs:

 Score = 435 (153.1 bits), Expect = 5.9e-40, P = 5.9e-40
 Identities = 89/142 (62%), Positives = 102/142 (71%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH+AIM SY Y+S  LK Y LDN +DGFYIAPAFMDKLVVHI+KNF+TLPNIKVPLILG
Sbjct:   102 GTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILG 161

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             +WGG GQG SFQCELVF KMGINPIMMSAGELES      +K  +     +    ++G  
Sbjct:   162 VWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 221

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   222 CCLFIND-LDAGAGRMGGTTQY 242

 Score = 112 (39.4 bits), Expect = 9.3e-05, P = 9.3e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  I+KG M C
Sbjct:   196 GNAGEPAKLIRQRYREAAEIIRKGNMCC 223


 >gi|12643758|sp|Q40565|RCA2_TOBAC  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE 2, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE 2) (RA 2)
            >gi|100381|pir||S25483 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-)  (clone JQ4) - common tobacco
            >gi|19990|emb|CAA78703.1| (Z14980) ribulose bisphosphate
            carboxylase activase [Nicotiana tabacum]
            Length = 439

Frame  3 hits (HSPs):               _________________                     
Frame  1 hits (HSPs):                         ____                        
                        __________________________________________________
Database sequence:     |                |                 |               | 439
                       0              150               300

  Plus Strand HSPs:

 Score = 435 (153.1 bits), Expect = 5.9e-40, P = 5.9e-40
 Identities = 86/142 (60%), Positives = 104/142 (73%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH+A++ SY Y+S GL+QYN+DN +DGFYIAP+FMDKLVVHI+KNF+ LPNIKVPLILG
Sbjct:   107 GTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILG 166

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             +WGG GQG SFQCELVF KMGINPIMMSAGELES      +K  +     +    ++G  
Sbjct:   167 VWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNI 226

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   227 CCLFIND-LDAGAGRMGGTTQY 247

 Score = 108 (38.0 bits), Expect = 0.00070, P = 0.00070
 Identities = 21/28 (75%), Positives = 23/28 (82%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREAA  I+KG + C
Sbjct:   201 GNAGEPAKLIRQRYREAAEIIRKGNICC 228


 >gi|6967045|emb|CAB72439.1|  (AJ271896) rubisco activase [Pinus halepensis]
            Length = 226

Frame  3 hits (HSPs):        ________________________________             
Frame  1 hits (HSPs):                            ________                 
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Plus Strand HSPs:

 Score = 433 (152.4 bits), Expect = 9.7e-40, P = 9.7e-40
 Identities = 90/142 (63%), Positives = 103/142 (72%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH AIM SY Y+ST  + Y+LDN MDG+YIAPAFMDKLVVHISKNFM LPNIKVPLILG
Sbjct:    24 GTHNAIMSSYDYISTAQRTYSLDNMMDGYYIAPAFMDKLVVHISKNFMNLPNIKVPLILG 83

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAK+GINPIMMSAGELES      +K  +     +    ++GK 
Sbjct:    84 IWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPAKLIRKRYREAADIVKKGKM 143

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
              +L  +  L   AG +G TT Y
Sbjct:   144 CVLFIND-LDAGAGRMGSTTQY 164

 Score = 109 (38.4 bits), Expect = 9.8e-05, P = 9.8e-05
 Identities = 23/30 (76%), Positives = 25/30 (83%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             G+AGEPAKLIR RYREAA  +KKGKM C L
Sbjct:   118 GDAGEPAKLIRKRYREAADIVKKGKM-CVL 146


 >gi|3914603|sp|P93431|RCA_ORYSA  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|7438148|pir||T04160 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-) precursor - rice >gi|1778414|gb|AAC28134.1| (U74321)
            ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
            sativa]
            Length = 432

Frame  3 hits (HSPs):             _________________                       
Frame  1 hits (HSPs):                        ____                         
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                |               | 432
                       0               150              300
__________________

Annotated Domains:
   Entrez               np-binding site: ATP (POTENTIAL).        156..163
   PRODOM               PD017953: Q40072(1) Q40073(1) RCA(1)     1..22
   PRODOM               PD003963: RCA(6)                         24..120
   PRODOM               PD003741: RCA(6)                         122..405
   PRODOM               PD133483: RCA_ORYSA                      407..431
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  156..163
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  31..38
   PROSITE              HOMEOBOX_1: 'Homeobox' domain signature. 336..359
__________________


  Plus Strand HSPs:

 Score = 433 (152.4 bits), Expect = 9.7e-40, P = 9.7e-40
 Identities = 92/142 (64%), Positives = 103/142 (72%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY YLS GL+ Y+ DN M GFYIAP+FMDKLVVHISKNFMTLPNIKVPLILG
Sbjct:    94 GTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPSFMDKLVVHISKNFMTLPNIKVPLILG 153

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES     A K  +     +    ++GK 
Sbjct:   154 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNGEPA-KLIRQRYREAADIIKKGKM 212

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   213 CCLFIND-LDAGAGRMGGTTQY 233

 Score = 107 (37.7 bits), Expect = 0.0012, P = 0.0012
 Identities = 23/28 (82%), Positives = 23/28 (82%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GN GEPAKLIR RYREAA  IKKGKM C
Sbjct:   188 GN-GEPAKLIRQRYREAADIIKKGKMCC 214


 >gi|81660|pir||S04048  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            precursor - Arabidopsis thaliana >gi|16471|emb|CAA32429.1| (X14212)
            rubisco activase (AA 1 - 473) [Arabidopsis thaliana]
            Length = 473

Frame  3 hits (HSPs):             ________________                        
Frame  1 hits (HSPs):                       ____                          
Annotated Domains:                       __                               
                        __________________________________________________
Database sequence:     |               |               |               |  | 473
                       0             150             300             450
__________________

Annotated Domains:
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  165..172
__________________


  Plus Strand HSPs:

 Score = 432 (152.1 bits), Expect = 1.2e-39, P = 1.2e-39
 Identities = 90/142 (63%), Positives = 103/142 (72%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH+A++ SY Y+S GL+QYNLDN MDGFYIAPAFMDKLVVHI+KNF+TLPNIKVPLILG
Sbjct:   103 GTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILG 162

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
               GG GQG SFQCELV AKMGINPIMMSAGELES       K  +     +    ++GK 
Sbjct:   163 SRGGKGQGKSFQCELVMAKMGINPIMMSAGELESGNAGEVRKLIRQRYREAADLIKKGKM 222

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   223 CCLFIND-LDAGAGRMGGTTQY 243

 Score = 106 (37.3 bits), Expect = 0.0026, P = 0.0026
 Identities = 22/28 (78%), Positives = 22/28 (78%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGE  KLIR RYREAA  IKKGKM C
Sbjct:   197 GNAGEVRKLIRQRYREAADLIKKGKMCC 224


 >gi|10720253|sp|Q42450|RCAB_HORVU  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE B, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE B) (RA B)
            >gi|100616|pir||A23703 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-) B precursor - barley >gi|167093|gb|AAA62703.1|
            (M55448) ribulose 1,5-bisphosphate carboxylase activase [Hordeum
            vulgare] >gi|167095|gb|AAA63162.1| (M55449) ribulose
            1,5-bisphosphate carboxylase activase [Hordeum vulgare]
            Length = 425

Frame  3 hits (HSPs):             _________________                       
Frame  1 hits (HSPs):                        ____                         
                        __________________________________________________
Database sequence:     |                 |                 |              | 425
                       0               150               300

  Plus Strand HSPs:

 Score = 431 (151.7 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 90/142 (63%), Positives = 103/142 (72%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH AI+ SY Y+S GL++Y+ DN MDG YIAPAFMDKL+VH++KNFMTLPNIKVPLILG
Sbjct:    91 GTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILG 150

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG SFQCELVFAKMGINPIMMSAGELES     A K  +     +     +GK 
Sbjct:   151 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNGEPA-KLIRQRYREAADIINKGKM 209

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   210 CCLFIND-LDAGAGRMGGTTQY 230

 Score = 102 (35.9 bits), Expect = 0.011, P = 0.011
 Identities = 22/28 (78%), Positives = 22/28 (78%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GN GEPAKLIR RYREAA  I KGKM C
Sbjct:   185 GN-GEPAKLIRQRYREAADIINKGKMCC 211


 >gi|9832973|gb|AAC97932.2|  (AF084478) ribulose-1,5-bisphosphate
            carboxylase/oxygenase activase precursor [Zea mays]
            Length = 433

Frame  3 hits (HSPs):              _________________                      
Frame  1 hits (HSPs):                         ____                        
                        __________________________________________________
Database sequence:     |                 |                |               | 433
                       0               150              300

  Plus Strand HSPs:

 Score = 417 (146.8 bits), Expect = 4.8e-38, P = 4.8e-38
 Identities = 88/142 (61%), Positives = 99/142 (69%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY Y+S G K YN DN MDGFYIA  FMDKLVVH+SKNFMTLPNIKVPLILG
Sbjct:    99 GTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILG 158

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             I GG GQG SFQCELVFAKMGI PIMMSAGELES      +K  +     +    ++GK 
Sbjct:   159 IVGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKM 218

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   219 CCLFIND-LDAGAGRMGGTTQY 239

 Score = 117 (41.2 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 23/28 (82%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREA+  IKKGKM C
Sbjct:   193 GNAGEPAKLIRQRYREASDLIKKGKMCC 220


 >gi|10720252|sp|Q9ZT00|RCA_MAIZE  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            Length = 433

Frame  3 hits (HSPs):              _________________                      
Frame  1 hits (HSPs):                         ____                        
                        __________________________________________________
Database sequence:     |                 |                |               | 433
                       0               150              300

  Plus Strand HSPs:

 Score = 417 (146.8 bits), Expect = 4.8e-38, P = 4.8e-38
 Identities = 88/142 (61%), Positives = 99/142 (69%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ SY Y+S G K YN DN MDGFYIA  FMDKLVVH+SKNFMTLPNIKVPLILG
Sbjct:    99 GTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILG 158

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             I GG GQG SFQCELVFAKMGI PIMMSAGELES      +K  +     +    ++GK 
Sbjct:   159 IVGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKM 218

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   219 CCLFIND-LDAGAGRMGGTTQY 239

 Score = 117 (41.2 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 23/28 (82%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREA+  IKKGKM C
Sbjct:   193 GNAGEPAKLIRQRYREASDLIKKGKMCC 220


 >gi|12643998|sp|P10871|RCA_SPIOL  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|4261546|gb|AAD13840.1|S45033_1 (S45033) ribulosebisphosphate
            carboxylase/oxygenase activase [Spinacia oleracea]
            Length = 472

Frame  3 hits (HSPs):             ________________                        
Frame  1 hits (HSPs):                       ____                          
                        __________________________________________________
Database sequence:     |               |               |               |  | 472
                       0             150             300             450

  Plus Strand HSPs:

 Score = 401 (141.2 bits), Expect = 2.4e-36, P = 2.4e-36
 Identities = 82/142 (57%), Positives = 99/142 (69%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH  I  S+ Y S GL++Y++DN +  FYIAPAFMDKLVVHI+KNF+ LPNIK+PLILG
Sbjct:   101 GTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILG 160

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             +WGG GQG SFQCELVFAK+GINPIMMSAGELES      +K  +     +     +GK 
Sbjct:   161 VWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKM 220

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   221 CALFIND-LEPGAGRMGGTTQY 241

 Score = 112 (39.4 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 24/30 (80%), Positives = 25/30 (83%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREAA  I KGKM C+L
Sbjct:   195 GNAGEPAKLIRQRYREAADLIAKGKM-CAL 223


 >gi|4261547|gb|AAD13841.1|S45033_11  (S45033) rubisco activase [Spinacia
            oleracea]
            Length = 435

Frame  3 hits (HSPs):              _________________                      
Frame  1 hits (HSPs):                         ____                        
                        __________________________________________________
Database sequence:     |                 |                |               | 435
                       0               150              300

  Plus Strand HSPs:

 Score = 401 (141.2 bits), Expect = 2.4e-36, P = 2.4e-36
 Identities = 82/142 (57%), Positives = 99/142 (69%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH  I  S+ Y S GL++Y++DN +  FYIAPAFMDKLVVHI+KNF+ LPNIK+PLILG
Sbjct:   101 GTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILG 160

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             +WGG GQG SFQCELVFAK+GINPIMMSAGELES      +K  +     +     +GK 
Sbjct:   161 VWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKM 220

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   221 CALFIND-LEPGAGRMGGTTQY 241

 Score = 112 (39.4 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 24/30 (80%), Positives = 25/30 (83%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREAA  I KGKM C+L
Sbjct:   195 GNAGEPAKLIRQRYREAADLIAKGKM-CAL 223


 >gi|81488|pir||A31082  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            precursor - spinach >gi|170129|gb|AAA34038.1| (J03610) rubisco
            activase precursor [Spinacia oleracea]
            Length = 472

Frame  3 hits (HSPs):             ________________                        
Frame  1 hits (HSPs):                       ____                          
Annotated Domains:      _______          _                                
                        __________________________________________________
Database sequence:     |               |               |               |  | 472
                       0             150             300             450
__________________

Annotated Domains:
   Entrez               domain: transit peptide (chloroplast)    1..58
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  163..170
__________________


  Plus Strand HSPs:

 Score = 395 (139.0 bits), Expect = 1.0e-35, P = 1.0e-35
 Identities = 81/142 (57%), Positives = 98/142 (69%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH  I  S+ Y S GL++Y++DN +   YIAPAFMDKLVVHI+KNF+ LPNIK+PLILG
Sbjct:   101 GTHVPIQSSFEYESQGLRKYDIDNMLGDLYIAPAFMDKLVVHITKNFLNLPNIKIPLILG 160

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             +WGG GQG SFQCELVFAK+GINPIMMSAGELES      +K  +     +     +GK 
Sbjct:   161 VWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKM 220

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +GGTT Y
Sbjct:   221 CALFIND-LEPGAGRMGGTTQY 241

 Score = 112 (39.4 bits), Expect = 9.6e-05, P = 9.6e-05
 Identities = 24/30 (80%), Positives = 25/30 (83%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREAA  I KGKM C+L
Sbjct:   195 GNAGEPAKLIRQRYREAADLIAKGKM-CAL 223


 >gi|3687676|gb|AAC62215.1|  (AF052424) rubisco activase precursor [Datisca
            glomerata]
            Length = 244

Frame  3 hits (HSPs):   ________________________                          
Frame  1 hits (HSPs):                _______                              
                        __________________________________________________
Database sequence:     |          |         |         |         |         | 244
                       0         50       100       150       200

  Plus Strand HSPs:

 Score = 353 (124.3 bits), Expect = 2.9e-31, P = 2.9e-31
 Identities = 76/115 (66%), Positives = 83/115 (72%), Frame = +3

Query:    84 GFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGXGQGXSFQCELVFAKMGINPIMM 263
             GFYIAPAFMDKLVVHI+KNFMT PNIKVPLILGIWGG GQG SFQCELVFAKMGINPIMM
Sbjct:     1 GFYIAPAFMDKLVVHITKNFMTFPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 60

Query:   264 SAGELESWKCRRASKTDQTEIP*SRXHXQEGKDVLLSSSTILMXEAGPLGGTTXY 428
             SAGELES      +K  +     +    ++GK   L  +  L   AG LGGTT Y
Sbjct:    61 SAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFIND-LDAGAGRLGGTTQY 114

 Score = 111 (39.1 bits), Expect = 3.6e-05, P = 3.6e-05
 Identities = 23/28 (82%), Positives = 23/28 (82%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR R REAA  IKKGKM C
Sbjct:    68 GNAGEPAKLIRQRCREAADIIKKGKMSC 95


 >gi|1805719|emb|CAA71667.1|  (Y10657) Rubisco activase [Chlorococcum littorale]
            Length = 403

Frame  3 hits (HSPs):           __________________                        
Frame  1 hits (HSPs):                       ____                          
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300

  Plus Strand HSPs:

 Score = 334 (117.6 bits), Expect = 3.0e-29, P = 3.0e-29
 Identities = 70/142 (49%), Positives = 92/142 (64%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ S  YLST  + +N  N  DGFYI+PAF+DK+ +H++KNFM LP IKVPLILG
Sbjct:    72 GTHSAVLSSEDYLSTASRNFN--NVEDGFYISPAFLDKMTIHVAKNFMDLPKIKVPLILG 129

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG +FQC L + K+GI+PI+MSAGELES      +K  +     +    ++GK 
Sbjct:   130 IWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDSVKKGKM 189

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +G  T Y
Sbjct:   190 CSLFIND-LDAGAGRMGMGTQY 210

 Score = 118 (41.5 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 24/30 (80%), Positives = 26/30 (86%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREA+  +KKGKM CSL
Sbjct:   164 GNAGEPAKLIRQRYREASDSVKKGKM-CSL 192


 >gi|132167|sp|P23489|RCA_CHLRE  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
            >gi|320539|pir||A45507 ribulose-bisphosphate carboxylase activase
            (EC 6.3.4.-) precursor - Chlamydomonas reinhardtii
            >gi|167434|gb|AAA33091.1| (M62962) ribulose 1,5-bisphosphate
            carboxylase/oxygenase activase [Chlamydomonas reinhardtii]
            >gi|227783|prf||1710353A RuBisCO activase [Chlamydomonas
            reinhardtii]
            Length = 408

Frame  3 hits (HSPs):            __________________                       
Frame  1 hits (HSPs):                       _____                         
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                 |             | 408
                       0                150               300
__________________

Annotated Domains:
   DOMO                 DM01630:                                 1..62
   DOMO                 DM01541:                                 64..268
   DOMO                 DM01443: RUBISCOACTIVASECHAIN            270..407
   Entrez               np-binding site: ATP (POTENTIAL).        138..145
   PRODOM               PD003963: RCA(6)                         1..102
   PRODOM               PD003741: RCA(6)                         104..387
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  138..145
__________________


  Plus Strand HSPs:

 Score = 334 (117.6 bits), Expect = 3.0e-29, P = 3.0e-29
 Identities = 71/142 (50%), Positives = 91/142 (64%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILG 182
             GTH A++ S  YLS     +N  N  DGFYI+PAF+DK+ +HI+KNFM LP IKVPLILG
Sbjct:    78 GTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILG 135

Query:   183 IWGGXGQGXSFQCELVFAKMGINPIMMSAGELESWKCRRASKTDQTEIP*SRXHXQEGKD 362
             IWGG GQG +FQC L + K+GI PI+MSAGELES      +K  +T    +    ++G+ 
Sbjct:   136 IWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRM 195

Query:   363 VLLSSSTILMXEAGPLGGTTXY 428
               L  +  L   AG +G TT Y
Sbjct:   196 CSLFIND-LDAGAGRMGDTTQY 216

 Score = 116 (40.8 bits), Expect = 2.8e-05, P = 2.8e-05
 Identities = 24/30 (80%), Positives = 26/30 (86%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFCSL 375
             GNAGEPAKLIR RYREA+  IKKG+M CSL
Sbjct:   170 GNAGEPAKLIRTRYREASDIIKKGRM-CSL 198


 >gi|10719703|gb|AAG22094.1|  (AF305876) ribulose 1,5-bisphosphate
            carboxylase/oxygenase activase precursor [Zea mays]
            Length = 308

Frame  3 hits (HSPs):   ___________________                               
Frame  1 hits (HSPs):             ______                                  
                        __________________________________________________
Database sequence:     |       |        |       |       |       |       | | 308
                       0      50      100     150     200     250     300

  Plus Strand HSPs:

 Score = 324 (114.1 bits), Expect = 3.4e-28, P = 3.4e-28
 Identities = 72/115 (62%), Positives = 80/115 (69%), Frame = +3

Query:    84 GFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGXGQGXSFQCELVFAKMGINPIMM 263
             GFYIA  FMDKLVVH+SKNFMTLPNIKVPLILGI GG GQG SFQCELVFAKMGI PIMM
Sbjct:     1 GFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIVGGKGQGKSFQCELVFAKMGITPIMM 60

Query:   264 SAGELESWKCRRASKTDQTEIP*SRXHXQEGKDVLLSSSTILMXEAGPLGGTTXY 428
             SAGELES      +K  +     +    ++GK   L  +  L   AG +GGTT Y
Sbjct:    61 SAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFIND-LDAGAGRMGGTTQY 114

 Score = 117 (41.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 23/28 (82%), Positives = 24/28 (85%), Frame = +1

Query:   286 GNAGEPAKLIRXRYREAAXXIKKGKMFC 369
             GNAGEPAKLIR RYREA+  IKKGKM C
Sbjct:    68 GNAGEPAKLIRQRYREASDLIKKGKMSC 95


 >gi|10720250|sp|Q06721|RCA_ANASC  RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
            ACTIVASE (RUBISCO ACTIVASE) (RA) >gi|485516|pir||S33627
            ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
            sp. (strain CA) >gi|296414|emb|CAA48129.1| (X67942) ribulose
            1,5-bisphosphate  carboxylase/oxygenase activase [Anabaena sp.]
            Length = 415

Frame  3 hits (HSPs):   _________                                         
Frame  2 hits (HSPs):             ______                                  
Frame  1 hits (HSPs):           ____                                      
                        __________________________________________________
Database sequence:     |                 |                  |             | 415
                       0               150                300

  Plus Strand HSPs:

 Score = 228 (80.3 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 41/66 (62%), Positives = 52/66 (78%), Frame = +3

Query:    87 FYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGXGQGXSFQCELVFAKMGINPIMMS 266
             +YIAP F+DKL VHI+KNF+ LP ++VPLILGI G  G+G +FQCEL F KMG+   ++S
Sbjct:     3 YYIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLIS 62

Query:   267 AGELES 284
              GELES
Sbjct:    63 GGELES 68

 Score = 82 (28.9 bits), Expect = 3.9e-24, Sum P(2) = 3.9e-24
 Identities = 19/29 (65%), Positives = 23/29 (79%), Frame = +1

Query:   289 NAGEPAKLIRXRYREAAXXIK-KGKMFCSL 375
             +AG+PA+LIR RYRE A  IK +GKM C L
Sbjct:    70 DAGDPARLIRLRYRETAELIKVRGKM-CVL 98

 Score = 58 (20.4 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
 Identities = 18/37 (48%), Positives = 22/37 (59%), Frame = +2

Query:   350 RRERCFALFINDLDAGS--WSSWWNYTIPVXNXMVNATL 460
             R + C  L INDLDAG+  +     YT  V   +VNATL
Sbjct:    92 RGKMC-VLMINDLDAGAGRFDEGTQYT--VNTQLVNATL 127


 >gi|2130074|pir||S65513  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            - rice (fragments) >gi|1478008|gb|AAB36380.1| gibberellin A-binding
            protein, GABP=47 kda ribulose-1,5-bisphosphate
            carboxylase/oxygenase activase homolog [Oryza sativa=rice, leaves,
            Peptide, 56 aa]
            Length = 56

Frame  1 hits (HSPs):   _____________________________________             
                        __________________________________________________
Database sequence:     |                |                 |               | 56
                       0               20                40

  Plus Strand HSPs:

 Score = 90 (31.7 bits), Expect = 0.0022, P = 0.0022
 Identities = 24/46 (52%), Positives = 27/46 (58%), Frame = +1

Query:   202 KEXPSNASLSLPRWESTLS**VLESWKVGNAGEPAKLIRXRYREAA 339
             KE          RW+  L+  + ES   GNAGEPAKLIR RYREAA
Sbjct:     1 KELDEGKQTDQDRWKG-LAYDISES---GNAGEPAKLIRQRYREAA 42


 >gi|5903100|gb|AAD55658.1|AC008017_31  (AC008017) Highly similar to
            ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            [Arabidopsis thaliana]
            Length = 245

Frame  3 hits (HSPs):   ___                                               
Frame  2 hits (HSPs):           _______                                   
Frame  1 hits (HSPs):      ______                                         
                        __________________________________________________
Database sequence:     |          |         |         |         |         | 245
                       0         50       100       150       200

  Plus Strand HSPs:

 Score = 68 (23.9 bits), Expect = 0.0043, Sum P(3) = 0.0043
 Identities = 15/25 (60%), Positives = 19/25 (76%), Frame = +1

Query:   292 AGEPAKLIRXRYREAAXXIK-KGKM 363
             AGEP +LIR RYR A+  I+ +GKM
Sbjct:    18 AGEPGRLIRDRYRTASQVIQNQGKM 42

 Score = 62 (21.8 bits), Expect = 0.0043, Sum P(3) = 0.0043
 Identities = 11/15 (73%), Positives = 14/15 (93%), Frame = +3

Query:   240 MGINPIMMSAGELES 284
             MG+ P++MSAGELES
Sbjct:     1 MGVEPVIMSAGELES 15

 Score = 41 (14.4 bits), Expect = 0.0043, Sum P(3) = 0.0043
 Identities = 12/30 (40%), Positives = 16/30 (53%), Frame = +2

Query:   371 LFINDLDAGSWSSWWNYTIPVXNXMVNATL 460
             L IND+DAG    +    + V N +V  TL
Sbjct:    45 LMINDIDAGL-GRFGETQMTVNNQIVVGTL 73


 >gi|482299|pir||A37458  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            - common tobacco (fragments)
            Length = 40

Frame  3 hits (HSPs):   ___________________________                       
                        __________________________________________________
Database sequence:     |                       |                          | 40
                       0                      20

  Plus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 0.018, P = 0.018
 Identities = 20/24 (83%), Positives = 20/24 (83%), Frame = +3

Query:   210 SFQCELVFAKMGINPIMMSAGELE 281
             SFQ ELVF  MGIN IMMSAGELE
Sbjct:     1 SFQXELVF--MGINXIMMSAGELE 22


 >gi|7438149|pir||A58840  ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
            II - rice (fragment)
            Length = 25

Frame  3 hits (HSPs):                 ____________________________________
                        __________________________________________________
Database sequence:     |                                      |           | 25
                       0                                     20

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 4.0, P = 0.98
 Identities = 11/18 (61%), Positives = 14/18 (77%), Frame = +3

Query:     3 GTHYAIMXSYXYLSTGLK 56
             GTH A++ SY YLS GL+
Sbjct:     8 GTHEAVLSSYEYLSQGLR 25


 >gi|5835165  ref|NP_008229.1|ATP8_10553 ATP synthase F0 subunit 8 [Pongo
            pygmaeus] >gi|2493084|sp|Q35584|ATP8_PONPY ATP SYNTHASE PROTEIN 8
            (ATPASE SUBUNIT 8) (A6L) >gi|7512257|pir||T14143 H+-transporting
            ATP synthase (EC 3.6.1.34) protein 8 - orangutan mitochondrion
            >gi|644496|dbj|BAA07309.1| (D38115) ATPase subunit 8 [Pongo
            pygmaeus]
            Length = 68

Frame  1 hits (HSPs):     __________________________                      
                        __________________________________________________
Database sequence:     |             |              |              |      | 68
                       0            20             40             60

  Plus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 8.7, P = 1.0
 Identities = 14/35 (40%), Positives = 18/35 (51%), Frame = +1

Query:    52 LNSTTWITTWTVFTLLLLLWTSLLFTSARTS*PCP 156
             LN+TTW+T  T   L L L T L   ++    P P
Sbjct:     4 LNTTTWLTVITPTLLALFLITQLKLLNSHLHPPTP 38


 >gi|7484791|pir||T05549  adenylate kinase homolog F24A6.120 - Arabidopsis
            thaliana >gi|4454016|emb|CAA23069.1| (AL035396) UMP/CMP kinase like
            protein [Arabidopsis thaliana] >gi|7269379|emb|CAB81339.1|
            (AL161563) UMP/CMP kinase like protein [Arabidopsis thaliana]
            Length = 227

Frame  3 hits (HSPs):   _________________                                 
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 77 (27.1 bits), Expect = 8.8, P = 1.0
 Identities = 20/80 (25%), Positives = 35/80 (43%), Frame = +3

Query:    39 LSTGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGXGQGXSFQ 218
             +S+  +   L     G  +  +F   ++    +  ++ P  K P I  + GG G G   Q
Sbjct:     2 ISSSSRSLKLSQAASGLKVGESFATDIISQEER--VSPPKEKAPFITFVLGGPGSGKGTQ 59

Query:   219 CELVFAKMGINPIMMSAGEL 278
             CE +    G+  +  SAG+L
Sbjct:    60 CEKIVETFGLQHL--SAGDL 77


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.93

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.330   0.144   0.469  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.342   0.147   0.582  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.339   0.143   0.484  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.351   0.156   0.530  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.361   0.157   0.676  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.327   0.137   0.410  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      162       152       10.  74 3  12 22  0.094   34
                                                    30  0.12    36
   +2      0      163       152       10.  74 3  12 22  0.094   34
                                                    30  0.12    36
   +1      0      163       150       10.  74 3  12 22  0.092   34
                                                    30  0.12    36
   -1      0      163       152       10.  74 3  12 22  0.094   34
                                                    30  0.12    36
   -2      0      163       153       10.  74 3  12 22  0.095   34
                                                    30  0.12    36
   -3      0      162       149       10.  74 3  12 22  0.092   34
                                                    30  0.12    36


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  40
  No. of states in DFA:  589 (58 KB)
  Total size of DFA:  199 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  153.51u 1.09s 154.60t  Elapsed: 00:00:26
  Total cpu time:  153.55u 1.14s 154.69t  Elapsed: 00:00:26
  Start:  Wed Oct  3 13:02:42 2001   End:  Wed Oct  3 13:03:08 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000