BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

Checking for E. coli insertion elements
Checking for E. coli insertion elements
Masked Sequence:
>'E14F03_L03_12.ab1'
CCAGNGNAATTCGGCCATTACGGCCGGGGTTGCATATACTAGCAACAATC
AAATCCATCTCAGTGCAAGATACGTTGGAAACAATAAAGGGGACGTGAAA
ACAGAGATAACAGGTGTGCTGTACCATGAAATGGTGCACGTTTGGCAGTG
GAGTGGGAATGGTCGTGCTCCTGGTGGATTAATTGAAGGTATTGCGGACT
ATGTTAGGCTGAAGGCAAACTATGCACCTAGTCACTGGGTGAAAGCAGGG
CAAGGACAGAAATGGGACCAGGGTTATGATGTTACTGCACGCTTTTTGGA
CTATTGTGATAGTCTCAAAAGTGGGTTTGTGGCACAACTTAACAAGTTGA
TGAGAACTGGTTATAGTGATCAATACTTCGTTCAGTTACTGGGAAAACCG
GTTGATCAGCTCTGGCGAGACTACAAGGCCAAGTATGGCAATATTGCCTA
ATAACCTAAGAGCTTTTTCATTTAAAGAATAAGCGAGTATATCGCAATGT
TTTTCAATAAGATTGTATCAGCTCTAAGATTCTGCTATTACAAGTTTTGG
TGNNNNNNNNNNNNNNNNNNNNNNCTGAGTTTTTAACA


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'E14F03_L03_12.ab1'
        (588 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 5 Sequences     : less than 5 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1183 103 |====================
   6310 1080 126 |=========================
   3980  954 251 |==================================================
   2510  703 190 |======================================
   1580  513 141 |============================
   1000  372  79 |===============
    631  293  84 |================
    398  209  47 |=========
    251  162  61 |============
    158  101  30 |======
    100   71  17 |===
   63.1   54   8 |=
   39.8   46   9 |=
   25.1   37   8 |=
   15.8   29   8 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 21  <<<<<<<<<<<<<<<<<
   10.0   21   0 |
   6.31   21   6 |=
   3.98   15   1 |:
   2.51   14   2 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|5360263|dbj|BAA81904.1|(AB024600) NtPRp27 [Nicotia... +2   602  1.2e-57   1
gi|5669008|gb|AAD46133.1|AF079526_1(AF079526) secreto... +2   567  6.2e-54   1
gi|4585909|gb|AAD25570.1|AC006298_3(AC006298) hypothe... +2   566  7.9e-54   1
gi|7489381|pir||T06205hypothetical protein pBH6-17 - ... +2   553  1.9e-52   1
gi|10140695|gb|AAG13529.1|AC023240_2(AC023240) putati... +2   547  8.1e-52   1
gi|7489663|pir||T06278benzothiadiazole-induced protei... +2   534  1.9e-50   1
gi|4585916|gb|AAD25577.1|AC006298_10(AC006298) hypoth... +2   516  1.6e-48   1
gi|7489380|pir||T06204hypothetical protein pBH6-12 - ... +2   462  8.3e-43   1
gi|10140698|gb|AAG13532.1|AC023240_5(AC023240) putati... +2   462  8.3e-43   1
gi|10140718|gb|AAG13552.1|AC023240_25(AC023240) putat... +2   435  6.0e-40   1
gi|4585913|gb|AAD25574.1|AC006298_7(AC006298) hypothe... +2   188  9.0e-14   1
gi|4512665|gb|AAD21719.1|(AC006931) unknown protein [... +2   115  0.00053   1
gi|7650419|gb|AAF66033.1|(AF237834) immunoglobulin he... +2    67  0.82      1
gi|7573171|emb|CAB87537.1|(AJ275452) immunoglobulin h... +2    66  0.89      1
gi|1345200|gb|AAB36250.1|retrotransposon peptide {Ty1... +2    65  0.94      1
gi|546095|gb|AAB30327.1|anti-histone H1 WRI-170 antib... +2    69  0.98      1
gi|1345199|gb|AAB36249.1|retrotransposon peptide {Ty1... +2    62  0.998     1
gi|2951664|emb|CAA12726.1|(AJ227748) immunoglobulin h... +2    62  0.998     1
gi|7573244|emb|CAB87554.1|(AJ275469) immunoglobulin h... +2    62  0.998     1
gi|10636823|emb|CAC10732.1|(AJ406668) immunoglobulin ... +2    62  0.998     1
gi|11137416|emb|CAC15785.1|(AJ402498) immunoglobulin ... +2    62  0.998     1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|5360263|dbj|BAA81904.1|  (AB024600) NtPRp27 [Nicotiana tabacum]
            Length = 242

Frame  2 hits (HSPs):                        _____________________________
                        __________________________________________________
Database sequence:     |          |         |         |          |        | 242
                       0         50       100       150        200

  Plus Strand HSPs:

 Score = 602 (211.9 bits), Expect = 1.2e-57, P = 1.2e-57
 Identities = 106/137 (77%), Positives = 120/137 (87%), Frame = +2

Query:    26 GVAYTSNNQIHLSARYVGNNKGDVKTEITGVLYHEMVHVWQWSGNGRAPGGLIEGIADYV 205
             GVAY SNN+IH+SA Y+    GDV+ EITGVLYHE  HVWQW+GNG APGGLIEGIADYV
Sbjct:   104 GVAYASNNEIHVSASYIQGYSGDVRREITGVLYHESTHVWQWNGNGGAPGGLIEGIADYV 163

Query:   206 RLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQYFVQ 385
             RLKA +APSHWVK GQG +WDQGYDVTARFLDYC+SL++GFVAQLNK MRTGYS+Q+F+ 
Sbjct:   164 RLKAGFAPSHWVKPGQGDRWDQGYDVTARFLDYCNSLRNGFVAQLNKKMRTGYSNQFFID 223

Query:   386 LLGKPVDQLWRDYKAKY 436
             LLGK VDQLW DYKAK+
Sbjct:   224 LLGKTVDQLWSDYKAKF 240


 >gi|5669008|gb|AAD46133.1|AF079526_1  (AF079526) secretory protein [Triticum
            aestivum]
            Length = 224

Frame  2 hits (HSPs):                     ________________________________
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 224
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 567 (199.6 bits), Expect = 6.2e-54, P = 6.2e-54
 Identities = 100/138 (72%), Positives = 116/138 (84%), Frame = +2

Query:    23 AGVAYTSNNQIHLSARYVGNNKGDVKTEITGVLYHEMVHVWQWSGNGRAPGGLIEGIADY 202
             +GVA+TS N IHLSA+YVG   GDVK E+TGVLYHE  HVWQW+G G+A GGLIEGIADY
Sbjct:    85 SGVAFTSANGIHLSAQYVGGISGDVKKEVTGVLYHEATHVWQWNGPGQANGGLIEGIADY 144

Query:   203 VRLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQYFV 382
             VRLKA +AP HWVK GQG +WDQGYDVTARFLDYCDSLK GFVA +N  M++GY+D +F 
Sbjct:   145 VRLKAGFAPGHWVKPGQGDRWDQGYDVTARFLDYCDSLKPGFVAHVNAKMKSGYTDDFFA 204

Query:   383 QLLGKPVDQLWRDYKAKY 436
             Q+LGK V QLW+DYKAK+
Sbjct:   205 QILGKNVQQLWKDYKAKF 222


 >gi|4585909|gb|AAD25570.1|AC006298_3  (AC006298) hypothetical protein
            [Arabidopsis thaliana]
            Length = 225

Frame  2 hits (HSPs):                      _______________________________
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 225
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 566 (199.2 bits), Expect = 7.9e-54, P = 7.9e-54
 Identities = 100/138 (72%), Positives = 115/138 (83%), Frame = +2

Query:    26 GVAYTSNNQIHLSARYVGNNKGDVKTEITGVLYHEMVHVWQWSGNGRAPGGLIEGIADYV 205
             GVAY S N+IH +  Y+    GDVK E TGV+YHE+VH WQW+G GRAPGGLIEGIADYV
Sbjct:    87 GVAYNSANEIHFNVGYLAGVSGDVKREFTGVVYHEVVHSWQWNGAGRAPGGLIEGIADYV 146

Query:   206 RLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQYFVQ 385
             RLKA YAPSHWV  G+G +WDQGYDVTARFLDYC+ L++GFVA+LNK MR GYSD +FV 
Sbjct:   147 RLKAGYAPSHWVGPGRGDRWDQGYDVTARFLDYCNGLRNGFVAELNKKMRNGYSDGFFVD 206

Query:   386 LLGKPVDQLWRDYKAKYG 439
             LLGK V+QLWR+YKAKYG
Sbjct:   207 LLGKDVNQLWREYKAKYG 224


 >gi|7489381|pir||T06205  hypothetical protein pBH6-17 - barley
            >gi|2266666|emb|CAA74594.1| (Y14202) hypothetical protein [Hordeum
            vulgare]
            Length = 225

Frame  2 hits (HSPs):                      _______________________________
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 225
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 553 (194.7 bits), Expect = 1.9e-52, P = 1.9e-52
 Identities = 98/138 (71%), Positives = 110/138 (79%), Frame = +2

Query:    26 GVAYTSNNQIHLSARYVGNNKGDVKTEITGVLYHEMVHVWQWSGNGRAPGGLIEGIADYV 205
             GVA+ S N IHLSA+YVG   GDVK E+TGVLYHE  HVWQW+G G A GGLIEGIADYV
Sbjct:    87 GVAFASGNGIHLSAKYVGGYSGDVKKEVTGVLYHEATHVWQWNGRGTANGGLIEGIADYV 146

Query:   206 RLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQYFVQ 385
             RLKA  AP HW   G G +WDQGYD+TARFLDYCDSL  GFVAQLN  M++GYSD +F Q
Sbjct:   147 RLKAGLAPGHWRPQGSGDRWDQGYDITARFLDYCDSLMPGFVAQLNAKMKSGYSDDFFAQ 206

Query:   386 LLGKPVDQLWRDYKAKYG 439
             +LGK V QLW+DYKAK+G
Sbjct:   207 ILGKNVQQLWKDYKAKFG 224


 >gi|10140695|gb|AAG13529.1|AC023240_2  (AC023240) putative secretory protein
            [Oryza sativa]
            Length = 260

Frame  2 hits (HSPs):                         ____________________________
                        __________________________________________________
Database sequence:     |         |         |        |         |        |  | 260
                       0        50       100      150       200      250

  Plus Strand HSPs:

 Score = 547 (192.6 bits), Expect = 8.1e-52, P = 8.1e-52
 Identities = 100/142 (70%), Positives = 114/142 (80%), Frame = +2

Query:    26 GVAYTSNNQIHLSARYVGNNK--GDVKTEITGVLYHEMVHVWQWSGNGRAPGGLIEGIAD 199
             GVA+TS + IHLSARYVG     GDV+ E+TGVLYHE  HVWQW G G A GGLIEGIAD
Sbjct:   118 GVAFTSGDGIHLSARYVGGYSAAGDVRAEVTGVLYHEATHVWQWDGRGGADGGLIEGIAD 177

Query:   200 YVRLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDS--LKSGFVAQLNKLMRTGYSDQ 373
             +VRL+A YAP HWV+ GQG +WDQGYDVTARFLDYCDS  +  GFVAQLN  M+ GYSD 
Sbjct:   178 FVRLRAGYAPPHWVQPGQGDRWDQGYDVTARFLDYCDSPAVVQGFVAQLNGKMKDGYSDD 237

Query:   374 YFVQLLGKPVDQLWRDYKAKYG 439
             +FVQ+ GK +DQLW+DYKAKYG
Sbjct:   238 FFVQISGKTIDQLWQDYKAKYG 259


 >gi|7489663|pir||T06278  benzothiadiazole-induced protein (clone WCI-5) - wheat
            >gi|1323750|gb|AAC49288.1| (U32431) unknown [Triticum aestivum]
            Length = 231

Frame  2 hits (HSPs):                      ______________________________ 
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 231
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 534 (188.0 bits), Expect = 1.9e-50, P = 1.9e-50
 Identities = 96/137 (70%), Positives = 112/137 (81%), Frame = +2

Query:    29 VAYTSNNQIHLSARYV-GNNKGDVKTEITGVLYHEMVHVWQWSGNGRAPGGLIEGIADYV 205
             VA TS N I L A+YV G ++GDVK E+ GVLYHE  HVWQW+G GRA GGLIEGIADYV
Sbjct:    90 VAQTSGNAIQLRAQYVAGFDEGDVKKEVKGVLYHEATHVWQWNGQGRANGGLIEGIADYV 149

Query:   206 RLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQYFVQ 385
             RLKA+ AP+HW   G G +WD+GYDVTA+FLDYCDSLK+GFVA++N  ++ GYSD YFVQ
Sbjct:   150 RLKADLAPTHWRPQGSGDRWDEGYDVTAKFLDYCDSLKAGFVAEMNSKLKDGYSDDYFVQ 209

Query:   386 LLGKPVDQLWRDYKAKY 436
             +LGK VDQLW DYKAKY
Sbjct:   210 ILGKSVDQLWNDYKAKY 226


 >gi|4585916|gb|AAD25577.1|AC006298_10  (AC006298) hypothetical protein
            [Arabidopsis thaliana]
            Length = 225

Frame  2 hits (HSPs):                      _______________________________
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 225
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 516 (181.6 bits), Expect = 1.6e-48, P = 1.6e-48
 Identities = 90/138 (65%), Positives = 114/138 (82%), Frame = +2

Query:    26 GVAYTSNNQIHLSARYVGNNKGDVKTEITGVLYHEMVHVWQWSGNGRAPGGLIEGIADYV 205
             G+AY+S ++IH +A  + ++KG V+   TGV+YHE+VH WQW+G GRAPGGLIEGIADYV
Sbjct:    87 GIAYSSQDEIHYNAGSLVDDKGYVRRGFTGVVYHEVVHSWQWNGAGRAPGGLIEGIADYV 146

Query:   206 RLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQYFVQ 385
             RLKA Y  SHWV+ G G +WDQGYDVTARFL+YC+ L++GFVA+LNK MR+ Y+D +FV 
Sbjct:   147 RLKAGYVASHWVRPGGGDRWDQGYDVTARFLEYCNDLRNGFVAELNKKMRSDYNDGFFVD 206

Query:   386 LLGKPVDQLWRDYKAKYG 439
             LLGK V+QLWR+YKA YG
Sbjct:   207 LLGKDVNQLWREYKANYG 224


 >gi|7489380|pir||T06204  hypothetical protein pBH6-12 - barley
            >gi|2266664|emb|CAA74593.1| (Y14201) hypothetical protein [Hordeum
            vulgare]
            Length = 229

Frame  2 hits (HSPs):                     ________________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 229
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 462 (162.6 bits), Expect = 8.3e-43, P = 8.3e-43
 Identities = 86/141 (60%), Positives = 104/141 (73%), Frame = +2

Query:    20 TAGVAYTSNNQIHLSARYVGNNKGD-VKTEITGVLYHEMVHVWQWS-GNGRAPGGLIEGI 193
             T G+A TS + I LSAR VG   GD +K ++ GVLYHE+VHVWQW   +     G+ EGI
Sbjct:    86 TNGIASTSGSTIELSARSVGGITGDNLKEQVDGVLYHEVVHVWQWGLQDYHEHHGIFEGI 145

Query:   194 ADYVRLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQ 373
             ADYVRLKA Y  ++WVK G G +WD+GYDVTARFLDYCDS K GFVA++N  ++ GY+D 
Sbjct:   146 ADYVRLKAGYVAANWVKEGGGSRWDEGYDVTARFLDYCDSRKPGFVAEMNGKLKDGYNDD 205

Query:   374 YFVQLLGKPVDQLWRDYKAKY 436
             YFVQ+LG   DQLW DYKAKY
Sbjct:   206 YFVQILGTSADQLWNDYKAKY 226


 >gi|10140698|gb|AAG13532.1|AC023240_5  (AC023240) putative secretory protein
            [Oryza sativa]
            Length = 233

Frame  2 hits (HSPs):                      _______________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200

  Plus Strand HSPs:

 Score = 462 (162.6 bits), Expect = 8.3e-43, P = 8.3e-43
 Identities = 85/143 (59%), Positives = 104/143 (72%), Frame = +2

Query:    26 GVAYTSNNQIHLSARYVG---NNKGDVKTEITGVLYHEMVHVWQWSGNGRAPGGLI-EGI 193
             GVA+TS + IHLSARYVG   ++ GDV+TE+TGVLYHE  HVWQW     A    + EGI
Sbjct:    91 GVAFTSGDGIHLSARYVGGYSSSSGDVRTEVTGVLYHEATHVWQWGLQDYAAHSWVYEGI 150

Query:   194 ADYVRLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQ 373
             AD+VRL+A Y  + WV+ GQG  W+  Y VTARF DYCDS+K GFVA +N  ++ GY+  
Sbjct:   151 ADFVRLRAGYVAAGWVQPGQGNSWEDSYSVTARFFDYCDSVKPGFVADINAKLKDGYNVD 210

Query:   374 YFVQLLGKPVDQLWRDYKAKYGN 442
             YFVQ+ GK V QLW+DYKAKYGN
Sbjct:   211 YFVQITGKTVQQLWQDYKAKYGN 233


 >gi|10140718|gb|AAG13552.1|AC023240_25  (AC023240) putative basic secretory
            protein [Oryza sativa]
            Length = 229

Frame  2 hits (HSPs):                      _______________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 229
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 435 (153.1 bits), Expect = 6.0e-40, P = 6.0e-40
 Identities = 82/141 (58%), Positives = 99/141 (70%), Frame = +2

Query:    26 GVAYTSNNQIHLSARYVGNNKG-DVKTEITGVLYHEMVHVWQWS-GNGRAPGGLIEGIAD 199
             G+A TS N I L A YV    G D KT++TGVLYHE+VHVWQW   +  A   + EGIAD
Sbjct:    89 GIASTSGNTITLGAGYVAGVTGNDFKTQVTGVLYHEVVHVWQWGLQDYGAHSWVYEGIAD 148

Query:   200 YVRLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQYF 379
             +VRL+A Y  + WV+ GQG  W+  Y VTARF DYCDS+K GFVA LN  ++ GY+  YF
Sbjct:   149 FVRLRAGYPAAGWVQPGQGNSWEDSYSVTARFFDYCDSVKPGFVADLNAKLKNGYNVDYF 208

Query:   380 VQLLGKPVDQLWRDYKAKYGN 442
             VQ+ GK V QLW+DYKAKYGN
Sbjct:   209 VQITGKTVQQLWQDYKAKYGN 229


 >gi|4585913|gb|AAD25574.1|AC006298_7  (AC006298) hypothetical protein
            [Arabidopsis thaliana]
            Length = 134

Frame  2 hits (HSPs):                             _____________________   
                        __________________________________________________
Database sequence:     |                  |                 |             | 134
                       0                 50               100

  Plus Strand HSPs:

 Score = 188 (66.2 bits), Expect = 9.0e-14, P = 9.0e-14
 Identities = 35/55 (63%), Positives = 40/55 (72%), Frame = +2

Query:    62 SARYVGNNKGDVKTEITGVLYHEMVHVWQWSGNG-RAPGGLIEGIADYVRLKANY 223
             +AR +  N GDV+   TGV+YHE+ H WQW G   R PGGLIEGIADYVRLKA Y
Sbjct:    71 NARSLAGNSGDVRVGFTGVIYHEVAHSWQWFGAADRVPGGLIEGIADYVRLKAGY 125


 >gi|4512665|gb|AAD21719.1|  (AC006931) unknown protein [Arabidopsis thaliana]
            Length = 276

Frame  2 hits (HSPs):                          _____________________      
                        __________________________________________________
Database sequence:     |        |        |        |         |        |    | 276
                       0       50      100      150       200      250

  Plus Strand HSPs:

 Score = 115 (40.5 bits), Expect = 0.00053, P = 0.00053
 Identities = 30/120 (25%), Positives = 51/120 (42%), Frame = +2

Query:    14 AITAGVAYTSNNQIHLSARYVGNNKGDVKTEITGVLYHEMVHVWQWSGNGRAPGGLIEGI 193
             ++T+G ++     I LS       K      +   L   MV +W W     A   L+ G+
Sbjct:   128 SVTSGASH-GEYVIRLSPSLTERKK--FSNAVESALRRSMVRIWLWGDESGASPELVAGM 184

Query:   194 ADYVRLKANYAPSHWVKAGQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQ 373
              +Y+ +++     H+ K G   K  +        LDYC+    GF+ +LN  MR  + D+
Sbjct:   185 VEYLAVESRKR-RHFEKFGGNWKDKEKSVYVVSLLDYCERRSEGFIRRLNHGMRLRWDDR 243


 >gi|7650419|gb|AAF66033.1|  (AF237834) immunoglobulin heavy chain variable
            region [Homo sapiens]
            Length = 84

Frame  2 hits (HSPs):   ___________________________                       
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 84
                       0          20          40          60          80

  Plus Strand HSPs:

 Score = 67 (23.6 bits), Expect = 1.7, P = 0.82
 Identities = 16/45 (35%), Positives = 20/45 (44%), Frame = +2

Query:   236 WVKA--GQGQKWDQGYDVTARFLDYCDSLKSGFVAQLNKLMRTGY 364
             WV+   GQG KW     V+ R   Y DS+K  F    +    T Y
Sbjct:     1 WVRQAPGQGLKWVSSISVSGRTTYYADSVKGRFTVSRDSSKNTLY 45


 >gi|7573171|emb|CAB87537.1|  (AJ275452) immunoglobulin heavy chain variable
            region [Homo sapiens]
            Length = 82

Frame  2 hits (HSPs):      ________________________________________       
                        __________________________________________________
Database sequence:     |           |           |           |            | | 82
                       0          20          40          60           80

  Plus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 2.2, P = 0.89
 Identities = 21/65 (32%), Positives = 30/65 (46%), Frame = +2

Query:   233 HWVKA--GQGQKWDQG--YDVTARFLDYCDSLKSGFVAQLNKLMRTGYSDQYFVQLLGKP 400
             HWV+   G+G +W  G  YD + R   Y DS+K  F    +    T Y +   ++   K 
Sbjct:     6 HWVRQAPGKGLEWVAGIRYDGSER--SYTDSVKGRFTISRDNFKNTVYLEMNSLRADDKA 63

Query:   401 VDQLWRD 421
             V    RD
Sbjct:    64 VYYCARD 70


 >gi|1345200|gb|AAB36250.1|  retrotransposon peptide {Ty1-copia retrotransposon
            element, clone Mel 68} [Vicia melanops, leaves, Peptide Transposon
            Partial, 76 aa]
            Length = 76

Frame  2 hits (HSPs):        ___________________________________          
                        __________________________________________________
Database sequence:     |            |            |            |           | 76
                       0           20           40           60

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 2.8, P = 0.94
 Identities = 22/53 (41%), Positives = 26/53 (49%), Frame = +2

Query:   164 RAPGGL-IEGIADYV-RL-KANY----APSHWVKAGQGQKWDQGYDVTARFLDYC 307
             + P G   +G  DYV RL K+ Y    AP  W K  +    DQGY  T    DYC
Sbjct:     9 KKPDGFQFKGKEDYVCRLRKSLYGLKQAPRQWYKKFESVMCDQGYQKTTS--DYC 61


 >gi|546095|gb|AAB30327.1|  anti-histone H1 WRI-170 antibody heavy chain variable
            region [human, systemic lupus erythematosus (Wri) patient, Peptide
            Partial, 98 aa]
            Length = 98

Frame  2 hits (HSPs):                 _____________________               
                        __________________________________________________
Database sequence:     |         |         |          |         |         | 98
                       0        20        40         60        80

  Plus Strand HSPs:

 Score = 69 (24.3 bits), Expect = 4.0, P = 0.98
 Identities = 14/39 (35%), Positives = 20/39 (51%), Frame = +2

Query:   218 NYAPSHWVKA--GQGQKWDQGYDVTARFLDYCDSLKSGF 328
             N  P HWV+   G+G +W  G    +  + Y DS+K  F
Sbjct:    30 NDYPLHWVRQPPGKGLEWSSGISWNSGSIGYADSVKGRF 68


 >gi|1345199|gb|AAB36249.1|  retrotransposon peptide {Ty1-copia retrotransposon
            element, clone Mel 17} [Vicia melanops, leaves, Peptide Transposon
            Partial, 76 aa]
            Length = 76

Frame  2 hits (HSPs):        ___________________________________          
                        __________________________________________________
Database sequence:     |            |            |            |           | 76
                       0           20           40           60

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 6.1, P = 1.0
 Identities = 21/53 (39%), Positives = 28/53 (52%), Frame = +2

Query:   164 RAPGGL-IEGIADYV-RL-KANY----APSHWVKAGQGQKWDQGYDVTARFLDYC 307
             + PGG  ++G  D+V RL K+ Y    AP  W K  +    DQGY  T    D+C
Sbjct:     9 KQPGGFQVKGKEDHVCRLRKSLYGFKQAPRQWYKKFEFVMCDQGYQKTTS--DHC 61


 >gi|2951664|emb|CAA12726.1|  (AJ227748) immunoglobulin heavy chain variable
            region [Homo sapiens]
            Length = 75

Frame  2 hits (HSPs):       _________________________                     
                        __________________________________________________
Database sequence:     |            |             |            |          | 75
                       0           20            40           60

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 6.1, P = 1.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Frame = +2

Query:   218 NYAPSHWVKA--GQGQKWDQGYDVTARFLDYCDSLKSGF 328
             +YA  HWV+   G+G +W  G    +  + Y DS+K  F
Sbjct:     7 DYA-MHWVRQVPGKGLEWVSGISWNSGSIGYADSVKGRF 44


 >gi|7573244|emb|CAB87554.1|  (AJ275469) immunoglobulin heavy chain variable
            region [Homo sapiens]
            Length = 74

Frame  2 hits (HSPs):   __________________________                        
                        __________________________________________________
Database sequence:     |            |             |            |          | 74
                       0           20            40           60

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 6.1, P = 1.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Frame = +2

Query:   218 NYAPSHWVKA--GQGQKWDQGYDVTARFLDYCDSLKSGF 328
             +YA  HWV+   G+G +W  G    +  + Y DS+K  F
Sbjct:     2 DYA-MHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRF 39


 >gi|10636823|emb|CAC10732.1|  (AJ406668) immunoglobulin heavy chain variable
            region [Homo sapiens]
            Length = 78

Frame  2 hits (HSPs):   ________________________                          
                        __________________________________________________
Database sequence:     |            |            |           |            | 78
                       0           20           40          60

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 6.1, P = 1.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Frame = +2

Query:   218 NYAPSHWVKA--GQGQKWDQGYDVTARFLDYCDSLKSGF 328
             +YA  HWV+   G+G +W  G    +  + Y DS+K  F
Sbjct:     1 DYA-MHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRF 38


 >gi|11137416|emb|CAC15785.1|  (AJ402498) immunoglobulin heavy chain variable
            region [Homo sapiens]
            Length = 81

Frame  2 hits (HSPs):   _______________________                           
                        __________________________________________________
Database sequence:     |           |            |           |           | | 81
                       0          20           40          60          80

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 6.1, P = 1.0
 Identities = 14/38 (36%), Positives = 21/38 (55%), Frame = +2

Query:   218 NYAPSHWVKA--GQGQKWDQGYDVTARFLDYCDSLKSGF 328
             +YA  HWV+   G+G +W  G    +  + Y DS+K  F
Sbjct:     1 DYA-MHWVRQAPGKGLEWVSGISWNSGSIGYADSVKGRF 38


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.99

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.355   0.156   0.532  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.334   0.145   0.486  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.363   0.162   0.668  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.369   0.165   0.638  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.354   0.154   0.578  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.339   0.147   0.474  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      195       185       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +2      0      195       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +1      0      196       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -1      0      196       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -2      0      195       185       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -3      0      195       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  21
  No. of states in DFA:  596 (59 KB)
  Total size of DFA:  227 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  186.65u 0.92s 187.57t  Elapsed: 00:01:37
  Total cpu time:  186.70u 0.93s 187.63t  Elapsed: 00:01:37
  Start:  Wed Jan 23 19:44:31 2002   End:  Wed Jan 23 19:46:08 2002


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000