R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 1388 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|1370180|emb|CAA98167.1| (Z73939) RAB5B [Lotus japonicus]
Length = 200
Frame 1 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 811 (285.5 bits), Expect = 8.6e-80, P = 8.6e-80
Identities = 159/165 (96%), Positives = 160/165 (96%), Frame = +1
Query: 193 MGCGSSLPDRDSRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 372
MGCGSSLPDRDSR GR N ENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1 MGCGSSLPDRDSRPFGRDNPENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 60
Query: 373 SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPES 552
SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPES
Sbjct: 61 SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPES 120
Query: 553 FSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
FSKAQYWVKELQKHG+PDIVMALVGNKADLLEKREVAVQDG DYA
Sbjct: 121 FSKAQYWVKELQKHGNPDIVMALVGNKADLLEKREVAVQDGIDYA 165
>gi|7438400|pir||T12437 small GTP-binding protein - common ice plant
>gi|3153154|emb|CAA06922.1| (AJ006225) small GTP-binding protein
[Mesembryanthemum crystallinum]
Length = 201
Frame 1 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 717 (252.4 bits), Expect = 7.8e-70, P = 7.8e-70
Identities = 143/166 (86%), Positives = 149/166 (89%), Frame = +1
Query: 193 MGCGSSLPDRD-SRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 369
MGC SS PDR SR NS N G DAKNL+VKLVLLGDSGVGKSCIVLRFVRGQFDP
Sbjct: 1 MGCASSAPDRTVSRGSSSLNSANEGASDAKNLKVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
Query: 370 TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE 549
TSKVTVGASFLSQTIALQDS+TVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE
Sbjct: 61 TSKVTVGASFLSQTIALQDSSTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPE 120
Query: 550 SFSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
SF+KAQYWVKELQKHGSPDI+MALVGNKADL E+REV QDG +YA
Sbjct: 121 SFTKAQYWVKELQKHGSPDIIMALVGNKADLQERREVPAQDGIEYA 166
>gi|7438434|pir||T06736 GTP-binding protein F28P10.180 - Arabidopsis thaliana
(fragment) >gi|4678309|emb|CAB41100.1| (AL049655) small GTP-binding
protein-like (fragment) [Arabidopsis thaliana]
Length = 224
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 224
0 50 100 150 200
Plus Strand HSPs:
Score = 671 (236.2 bits), Expect = 5.9e-65, P = 5.9e-65
Identities = 137/158 (86%), Positives = 141/158 (89%), Frame = +1
Query: 217 DRDSRQL-GRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA 393
DR+S L G NSEN DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD TSKVTVGA
Sbjct: 7 DRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDATSKVTVGA 66
Query: 394 SFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYW 573
SFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAVIVYDITSPESF KAQYW
Sbjct: 67 SFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPESFKKAQYW 126
Query: 574 VKELQKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
VKELQKHGSPDIVMALVGNKADL EKREV +DG + A
Sbjct: 127 VKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELA 164
>gi|11992279|gb|AAG42497.1|AF323991_1 (AF323991) small GTP-binding protein
RAB5B [Oryza sativa]
Length = 199
Frame 1 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 659 (232.0 bits), Expect = 1.1e-63, P = 1.1e-63
Identities = 129/165 (78%), Positives = 143/165 (86%), Frame = +1
Query: 193 MGCGSSLPDRDSRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 372
MGC SS+P R + L +++N D+K+LR KLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1 MGCSSSVPARSTGGLNNISNDNSA-TDSKDLRAKLVLLGDSGVGKSCIVLRFVRGQFDPT 59
Query: 373 SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPES 552
SKVTVGASFLSQT+AL+DST VKFEIWDTAGQERYAALAPLYYRGAA AV+VYDITSPES
Sbjct: 60 SKVTVGASFLSQTLALEDSTIVKFEIWDTAGQERYAALAPLYYRGAAAAVVVYDITSPES 119
Query: 553 FSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
FSKAQYWVKELQKHGSPDI+M LVGNKADL E R V+ Q+ +YA
Sbjct: 120 FSKAQYWVKELQKHGSPDIIMVLVGNKADLHENRHVSSQEAQEYA 164
>gi|5931625|dbj|BAA84717.1| (AB032761) rab5B [Oryza sativa]
>gi|10880926|gb|AAG24438.1|AF304518_1 (AF304518) small GTP-binding
protein RAB5B [Oryza sativa]
Length = 199
Frame 1 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 655 (230.6 bits), Expect = 2.9e-63, P = 2.9e-63
Identities = 128/165 (77%), Positives = 143/165 (86%), Frame = +1
Query: 193 MGCGSSLPDRDSRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT 372
MGC SS+P R + L +++N D+K+LR KLVLLGDSGVGKSCIVLRFVRGQFDPT
Sbjct: 1 MGCSSSVPARSTGGLNNISNDNSA-TDSKDLRAKLVLLGDSGVGKSCIVLRFVRGQFDPT 59
Query: 373 SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPES 552
SKVTVGASFLSQT+AL+DST VKFEIWDTAGQERYAALAPLYYRGAA AV+VYDITSPES
Sbjct: 60 SKVTVGASFLSQTLALEDSTIVKFEIWDTAGQERYAALAPLYYRGAAAAVVVYDITSPES 119
Query: 553 FSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
FSKAQYWVKELQKHGSPDI+M LVGNKADL + R V+ Q+ +YA
Sbjct: 120 FSKAQYWVKELQKHGSPDIIMVLVGNKADLHKNRHVSSQEAQEYA 164
>gi|1346958|sp|P20339|RB5A_HUMAN RAS-RELATED PROTEIN RAB-5A
>gi|12654847|gb|AAH01267.1|AAH01267 (BC001267) Unknown (protein for
MGC:5048) [Homo sapiens]
Length = 215
Frame 1 hits (HSPs): ____________________________________
Annotated Domains: ______________________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 27..34
Entrez np-binding site: GTP (BY SIMILARITY). 75..79
Entrez np-binding site: GTP (BY SIMILARITY). 133..136
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 49..57
Entrez lipid-binding site: GERANYL-GERANYL (BY 212
Entrez lipid-binding site: GERANYL-GERANYL (BY 213
PFAM ras: Ras family 22..215
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 21..42
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 44..60
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 62..84
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 124..137
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 159..181
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 21..184
PRODOM PD026052: RB5A(2) O88565(1) 186..214
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 27..34
__________________
Plus Strand HSPs:
Score = 462 (162.6 bits), Expect = 8.2e-43, P = 8.2e-43
Identities = 94/154 (61%), Positives = 115/154 (74%), Frame = +1
Query: 226 SRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS 405
SR RPN N G K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+
Sbjct: 3 SRGATRPNGPNTGN---KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT 59
Query: 406 QTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKEL 585
QT+ L D TTVKFEIWDTAGQERY +LAP+YYRGA A++VYDIT+ ESF++A+ WVKEL
Sbjct: 60 QTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 118
Query: 586 QKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
Q+ SP+IV+AL GNKADL KR V Q+ YA
Sbjct: 119 QRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 152
>gi|12083645 ref|NP_073183.1| small GTP-binding protein rab5 [Rattus
norvegicus] >gi|3309068|gb|AAC26004.1| (AF072935) small GTP-binding
protein rab5 [Rattus norvegicus]
Length = 215
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 462 (162.6 bits), Expect = 8.2e-43, P = 8.2e-43
Identities = 94/154 (61%), Positives = 115/154 (74%), Frame = +1
Query: 226 SRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS 405
+R RPN N G K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+
Sbjct: 3 NRGATRPNGPNTGN---KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT 59
Query: 406 QTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKEL 585
QT+ L D TTVKFEIWDTAGQERY +LAP+YYRGA A++VYDIT+ ESFS+A+ WVKEL
Sbjct: 60 QTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFSRAKNWVKEL 118
Query: 586 QKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
Q+ SP+IV+AL GNKADL KR V Q+ YA
Sbjct: 119 QRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 152
>gi|131794|sp|P18066|RB5A_CANFA RAS-RELATED PROTEIN RAB-5A
>gi|108110|pir||A30413 GTP-binding protein Rab5 - dog
>gi|164056|gb|AAA30889.1| (M35520) GTP-binding protein (rab5)
[Canis familiaris]
Length = 215
Frame 1 hits (HSPs): ____________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 17..162
Entrez np-binding site: GTP (BY SIMILARITY). 27..34
Entrez np-binding site: GTP (BY SIMILARITY). 75..79
Entrez np-binding site: GTP (BY SIMILARITY). 133..136
Entrez Domain: EFFECTOR REGION (POTENTIAL). 49..57
Entrez lipid-binding site: GERANYL-GERANYL (BY 212
Entrez lipid-binding site: GERANYL-GERANYL (BY 213
PFAM ras: Ras family 22..215
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 21..42
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 44..60
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 62..84
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 124..137
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 159..181
PRODOM PD044464: O88565(1) RB5A(1) 1..19
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 21..184
PRODOM PD026052: RB5A(2) O88565(1) 186..214
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 27..34
__________________
Plus Strand HSPs:
Score = 459 (161.6 bits), Expect = 1.7e-42, P = 1.7e-42
Identities = 93/154 (60%), Positives = 115/154 (74%), Frame = +1
Query: 226 SRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS 405
+R RPN N G K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+
Sbjct: 3 NRGATRPNGPNTGN---KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT 59
Query: 406 QTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKEL 585
QT+ L D TTVKFEIWDTAGQERY +LAP+YYRGA A++VYDIT+ ESF++A+ WVKEL
Sbjct: 60 QTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 118
Query: 586 QKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
Q+ SP+IV+AL GNKADL KR V Q+ YA
Sbjct: 119 QRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 152
>gi|6010031|emb|CAB57219.1| (AJ249865) GTP binding protein [Cichorium intybus X
Cichorium endivia subsp. endivia]
Length = 200
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 456 (160.5 bits), Expect = 3.6e-42, P = 3.6e-42
Identities = 88/136 (64%), Positives = 111/136 (81%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL KLVLLGD G GKS +VLRFV+GQF + T+GA+F SQT+ + D+T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLVVNDAT-VKFEIWDT 66
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKAD 126
Query: 640 LLEKREVAVQDGTDYA 687
L +KR+V V++ YA
Sbjct: 127 LEDKRKVTVEEARVYA 142
>gi|12311680|emb|CAC24475.1| (AJ296334) GTP binding protein [Cichorium intybus
x Cichorium endivia]
Length = 196
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 196
0 50 100 150
Plus Strand HSPs:
Score = 456 (160.5 bits), Expect = 3.6e-42, P = 3.6e-42
Identities = 88/136 (64%), Positives = 110/136 (80%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL K VLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D+T VKFEIWDT
Sbjct: 4 NLNAKFVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDAT-VKFEIWDT 62
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 63 AGQERYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKAD 122
Query: 640 LLEKREVAVQDGTDYA 687
L +KREV ++ YA
Sbjct: 123 LEDKREVTAEEARVYA 138
>gi|12311684|emb|CAC24477.1| (AJ296336) GTP binding protein [Cichorium intybus
x Cichorium endivia]
Length = 200
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 456 (160.5 bits), Expect = 3.6e-42, P = 3.6e-42
Identities = 88/136 (64%), Positives = 111/136 (81%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL KLVLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D+T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDAT-VKFEIWDT 66
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKAD 126
Query: 640 LLEKREVAVQDGTDYA 687
L +KR+V ++ YA
Sbjct: 127 LEDKRKVTAEEARVYA 142
>gi|4759004 ref|NP_004153.1| RAB5A, member RAS oncogene family; RAS-associated
protein RAB5A [Homo sapiens] >gi|106189|pir||F34323 GTP-binding
protein Rab5 - human >gi|550070|gb|AAA60245.1| (M28215) GTP-binding
protein [Homo sapiens]
Length = 215
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 455 (160.2 bits), Expect = 4.5e-42, P = 4.5e-42
Identities = 93/154 (60%), Positives = 114/154 (74%), Frame = +1
Query: 226 SRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS 405
SR RPN N G K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+
Sbjct: 3 SRGATRPNGPNTGN---KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT 59
Query: 406 QTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKEL 585
QT+ L D TTVKFEIWDTAGQE Y +LAP+YYRGA A++VYDIT+ ESF++A+ WVKEL
Sbjct: 60 QTVCLDD-TTVKFEIWDTAGQEGYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL 118
Query: 586 QKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
Q+ SP+IV+AL GNKADL KR V Q+ YA
Sbjct: 119 QRQASPNIVIALSGNKADLANKRAVDFQEAQSYA 152
>gi|1076545|pir||S49225 guanine nucleotide regulatory protein - fava bean
>gi|547478|emb|CAA85733.1| (Z37503) guanine nucleotide regulatory
protein [Vicia faba] >gi|1098297|prf||2115367E small GTP-binding
protein [Vicia faba]
Length = 200
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 17..24
__________________
Plus Strand HSPs:
Score = 453 (159.5 bits), Expect = 7.4e-42, P = 7.4e-42
Identities = 87/136 (63%), Positives = 111/136 (81%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL KLVLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D+T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDAT-VKFEIWDT 66
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMAL GNK+D
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSSDSFTRAKKWVQELQKQGNPNMVMALTGNKSD 126
Query: 640 LLEKREVAVQDGTDYA 687
L +KR+V ++ YA
Sbjct: 127 LEDKRKVTAEEARVYA 142
>gi|4506371 ref|NP_002859.1| RAB5B, member RAS oncogene family [Homo sapiens]
>gi|6755262 ref|NP_035359.1| RAB5B, member RAS oncogene family [Mus
musculus] >gi|11435129 ref|XP_006725.1| RAB5B, member RAS oncogene
family [Homo sapiens] >gi|464570|sp|P35239|RB5B_HUMAN RAS-RELATED
PROTEIN RAB-5B >gi|284376|pir||A43925 GTP-binding protein Rab5b -
human >gi|2118483|pir||I48730 rab5b - mouse >gi|7438415|pir||S65932
GTP-binding protein Rab5b - mouse >gi|35839|emb|CAA38653.1|
(X54871) ras related protein Rab5b [Homo sapiens]
>gi|871435|emb|CAA59016.1| (X84239) rab5b [Mus musculus]
Length = 215
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 452 (159.1 bits), Expect = 9.5e-42, P = 9.5e-42
Identities = 91/154 (59%), Positives = 115/154 (74%), Frame = +1
Query: 226 SRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS 405
SR RPN G Q +K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+
Sbjct: 3 SRSTARPN---GQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 59
Query: 406 QTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKEL 585
Q++ L D TTVKFEIWDTAGQERY +LAP+YYRGA A++VYDIT+ E+F++A+ WVKEL
Sbjct: 60 QSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKEL 118
Query: 586 QKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
Q+ SP IV+AL GNKADL KR V ++ YA
Sbjct: 119 QRQASPSIVIALAGNKADLANKRMVEYEEAQAYA 152
>gi|4741844|gb|AAD28731.1|AF112964_1 (AF112964) small GTP-binding protein
[Triticum aestivum]
Length = 209
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
Plus Strand HSPs:
Score = 452 (159.1 bits), Expect = 9.5e-42, P = 9.5e-42
Identities = 88/143 (61%), Positives = 111/143 (77%), Frame = +1
Query: 259 GGGQDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 435
G G +R KLVLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D T
Sbjct: 6 GAGAGGSKIRNAKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDET- 64
Query: 436 VKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVM 615
VKFEIWDTAGQERY +LAP+YYRGAA A++VYDIT+ SF++A+ WV+ELQ G+P+ VM
Sbjct: 65 VKFEIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNPNTVM 124
Query: 616 ALVGNKADLLEKREVAVQDGTDYA 687
AL GNKAD+LE R+V V++ T YA
Sbjct: 125 ALAGNKADMLEARQVPVEEATTYA 148
>gi|12311682|emb|CAC24476.1| (AJ296335) GTP binding protein [Cichorium intybus
x Cichorium endivia]
Length = 200
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 452 (159.1 bits), Expect = 9.5e-42, P = 9.5e-42
Identities = 87/136 (63%), Positives = 110/136 (80%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL K VLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D+T VKFEIWDT
Sbjct: 8 NLNAKFVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDAT-VKFEIWDT 66
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKAD 126
Query: 640 LLEKREVAVQDGTDYA 687
L +KR+V ++ YA
Sbjct: 127 LEDKRKVTAEEARVYA 142
>gi|11426181 ref|XP_008401.1| RAB5C, member RAS oncogene family [Homo sapiens]
Length = 261
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 450 (158.4 bits), Expect = 1.5e-41, P = 1.5e-41
Identities = 98/186 (52%), Positives = 125/186 (67%), Frame = +1
Query: 157 PSVPTSKSSPLAMGCGSSLPDRDS---RQLGRPNSENGG-----GQDAKN--LRVKLVLL 306
P P SPL+ S+ P + GR + GG G A N + KLVLL
Sbjct: 13 PEPPWRSPSPLSASLHSTSPHPHALWTTTAGRAMAGRGGAARPNGPAAGNKICQFKLVLL 72
Query: 307 GDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL 486
G+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +L
Sbjct: 73 GESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSL 131
Query: 487 APLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAV 666
AP+YYRGA A++VYDIT+ ++F++A+ WVKELQ+ SP+IV+AL GNKADL KR V
Sbjct: 132 APMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEF 191
Query: 667 QDGTDYA 687
Q+ YA
Sbjct: 192 QEAQAYA 198
>gi|6010033|emb|CAB57220.1| (AJ249866) GTP binding protein [Cichorium intybus X
Cichorium endivia subsp. endivia]
Length = 200
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 449 (158.1 bits), Expect = 2.0e-41, P = 2.0e-41
Identities = 87/136 (63%), Positives = 110/136 (80%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL KLVLLGD G GKS +VL FV+GQF + T+GA+F SQT+A+ D+T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVLLFVKGQFLEFQESTIGAAFFSQTLAVNDAT-VKFEIWDT 66
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKAD 126
Query: 640 LLEKREVAVQDGTDYA 687
L +KR+V ++ YA
Sbjct: 127 LEDKRKVTAEEARVYA 142
>gi|12311678|emb|CAC24474.1| (AJ296333) GTP binding protein [Cichorium intybus
x Cichorium endivia]
Length = 196
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 196
0 50 100 150
Plus Strand HSPs:
Score = 449 (158.1 bits), Expect = 2.0e-41, P = 2.0e-41
Identities = 87/136 (63%), Positives = 109/136 (80%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL K VLLGD G GKS +VLRFV+GQF T+GA+F SQT+A+ D+T VKFEIWDT
Sbjct: 4 NLNAKFVLLGDMGAGKSSLVLRFVKGQFLEFQVSTIGAAFFSQTLAVNDAT-VKFEIWDT 62
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 63 AGQERYHSLAPMYYRGAAAAIIVYDITSADSFTRAKKWVQELQKQGNPNMVMALAGNKAD 122
Query: 640 LLEKREVAVQDGTDYA 687
L +KR+V ++ YA
Sbjct: 123 LEDKRKVTAEEARVYA 138
>gi|1710027|sp|P51147|RB5C_CANFA RAS-RELATED PROTEIN RAB-5C
>gi|481437|pir||S38625 Rab5c protein - dog >gi|7438414|pir||S65933
GTP-binding protein Rab5c - dog >gi|415377|emb|CAA81626.1| (Z27110)
Rab5c protein [Canis familiaris]
Length = 216
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 28..35
Entrez np-binding site: GTP (BY SIMILARITY). 76..80
Entrez np-binding site: GTP (BY SIMILARITY). 134..137
Entrez Domain: EFFECTOR REGION (POTENTIAL). 50..58
Entrez lipid-binding site: GERANYL-GERANYL (BY 213
Entrez lipid-binding site: GERANYL-GERANYL (BY 214
PFAM ras: Ras family 23..216
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 22..43
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 45..61
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 63..85
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 125..138
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 160..182
PRODOM PD025778: Q98932(1) RB5C(1) 1..20
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 22..185
PRODOM PD014655: RB5C(2) Q98932(1) RB5B(1) 187..215
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 28..35
__________________
Plus Strand HSPs:
Score = 447 (157.4 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 89/149 (59%), Positives = 112/149 (75%), Frame = +1
Query: 241 RPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL 420
RPN G K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L
Sbjct: 9 RPNGPAAGN---KICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL 65
Query: 421 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGS 600
D TTVKFEIWDTAGQERY +LAP+YYRGA A++VYDIT+ ++F++A+ WVKELQ+ S
Sbjct: 66 DD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 124
Query: 601 PDIVMALVGNKADLLEKREVAVQDGTDYA 687
P+IV+AL GNKADL KR V Q+ YA
Sbjct: 125 PNIVIALAGNKADLASKRAVEFQEAQAYA 153
>gi|4759020 ref|NP_004574.1| RAB5C, member RAS oncogene family; RAB, member of
RAS oncogene family-like; RAB5C, member of RAS oncogene family
[Homo sapiens] >gi|1710028|sp|P51148|RB5C_HUMAN RAS-RELATED PROTEIN
RAB-5C (RAB5L) (L1880) >gi|2118482|pir||I38703 ras-related small
GTP binding protein Rab5 - human >gi|508285|gb|AAA74081.1| (U11293)
Rab5c-like protein, similar to Canis familiaris Rab5c protein, PIR
Accession Number S38625 [Homo sapiens] >gi|642532|gb|AAB08927.1|
(U18420) ras-related small GTP binding protein Rab5 [Homo sapiens]
Length = 216
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 447 (157.4 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 89/149 (59%), Positives = 112/149 (75%), Frame = +1
Query: 241 RPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL 420
RPN G K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L
Sbjct: 9 RPNGPAAGN---KICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL 65
Query: 421 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGS 600
D TTVKFEIWDTAGQERY +LAP+YYRGA A++VYDIT+ ++F++A+ WVKELQ+ S
Sbjct: 66 DD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 124
Query: 601 PDIVMALVGNKADLLEKREVAVQDGTDYA 687
P+IV+AL GNKADL KR V Q+ YA
Sbjct: 125 PNIVIALAGNKADLASKRAVEFQEAQAYA 153
>gi|1370178|emb|CAA98166.1| (Z73938) RAB5A [Lotus japonicus]
Length = 200
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 447 (157.4 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 86/136 (63%), Positives = 109/136 (80%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL KLVLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D+T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVLRFVKGQFLEFQESTIGAAFFSQTLAVNDAT-VKFEIWDT 66
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMA GNK+D
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSSDSFTRAKKWVQELQKQGNPNMVMAFAGNKSD 126
Query: 640 LLEKREVAVQDGTDYA 687
L +KR+V + YA
Sbjct: 127 LEDKRKVTADEARVYA 142
>gi|1531769|emb|CAA69142.1| (Y07811) rab5C-like protein [Gallus gallus]
Length = 216
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 447 (157.4 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 90/149 (60%), Positives = 111/149 (74%), Frame = +1
Query: 241 RPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL 420
RPN G K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L
Sbjct: 9 RPNGPAAGN---KICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL 65
Query: 421 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGS 600
D TTVKFEIWDTAGQERY +LAP+YYRGA A++VYDIT+ ++F +A+ WVKELQ+ S
Sbjct: 66 DD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQAS 124
Query: 601 PDIVMALVGNKADLLEKREVAVQDGTDYA 687
P+IV+AL GNKADL KR V QD YA
Sbjct: 125 PNIVIALAGNKADLATKRAVDFQDAQTYA 153
>gi|7672665|gb|AAF66594.1|AF141304_1 (AF141304) small GTPase [Homo sapiens]
Length = 216
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 216
0 50 100 150 200
Plus Strand HSPs:
Score = 447 (157.4 bits), Expect = 3.2e-41, P = 3.2e-41
Identities = 89/149 (59%), Positives = 112/149 (75%), Frame = +1
Query: 241 RPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL 420
RPN G K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L
Sbjct: 9 RPNGPAAGN---KICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL 65
Query: 421 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGS 600
D TTVKFEIWDTAGQERY +LAP+YYRGA A++VYDIT+ ++F++A+ WVKELQ+ S
Sbjct: 66 DD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQAS 124
Query: 601 PDIVMALVGNKADLLEKREVAVQDGTDYA 687
P+IV+AL GNKADL KR V Q+ YA
Sbjct: 125 PNIVIALAGNKADLASKRAVEFQEAQAYA 153
>gi|7499980|pir||T21442 hypothetical protein F26H9.6 - Caenorhabditis elegans
>gi|3876435|emb|CAB04205.1| (Z81516) Similarity to Human
RAS-related protein RAB-5A (SW:P20339), contains similarity to Pfam
domain: PF00071 (Ras family), Score=340.5, E-value=6.2e-99,
N=1~cDNA EST EMBL:T00417 comes from this gene~cDNA EST EMBL:T01542
comes from this gene~cDNA ES>
Length = 208
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
Plus Strand HSPs:
Score = 444 (156.3 bits), Expect = 6.7e-41, P = 6.7e-41
Identities = 86/142 (60%), Positives = 110/142 (77%), Frame = +1
Query: 262 GGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 441
GG + + + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D+T +K
Sbjct: 12 GGPN-RTCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDAT-IK 69
Query: 442 FEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMAL 621
FEIWDTAGQERY +LAP+YYRGA A++VYDIT+ ESF KA+ WVKELQ+ SP+IVMAL
Sbjct: 70 FEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQESFQKAKNWVKELQRQASPNIVMAL 129
Query: 622 VGNKADLLEKREVAVQDGTDYA 687
GNKAD+ KR V ++ YA
Sbjct: 130 AGNKADVANKRTVEYEEANAYA 151
>gi|421941|pir||S33160 GTP-binding protein, ras-related - common tobacco
>gi|296878|emb|CAA50609.1| (X71609) ras-related GTP-binding protein
[Nicotiana tabacum]
Length = 200
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 17..24
__________________
Plus Strand HSPs:
Score = 442 (155.6 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 84/137 (61%), Positives = 109/137 (79%), Frame = +1
Query: 277 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 456
KN+ KLVLLGD G GKS ++LRFV+GQF + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 7 KNMNAKLVLLGDVGAGKSSLLLRFVKGQFIEFQESTIGAAFFSQTVAVNDAT-VKFEIWD 65
Query: 457 TAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKA 636
TAGQERY +L P+YYRGAA A+IV+DIT+ SF +A+ WV+ELQ G+P++VMAL GNKA
Sbjct: 66 TAGQERYHSLPPMYYRGAAAAIIVFDITNQASFDRAKKWVQELQAQGNPNMVMALAGNKA 125
Query: 637 DLLEKREVAVQDGTDYA 687
DLL+ R+VA ++ YA
Sbjct: 126 DLLDARKVAAEEAQTYA 142
>gi|400977|sp|P31583|RHN1_NICPL RAS-RELATED PROTEIN RHN1 >gi|100274|pir||S20445
GTP-binding protein, 21.8K - curled-leaved tobacco
>gi|19691|emb|CAA46112.1| (X64941) small GTP binding protein
[Nicotiana plumbaginifolia]
Length = 200
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 17..24
Entrez np-binding site: GTP (BY SIMILARITY). 65..69
Entrez np-binding site: GTP (BY SIMILARITY). 123..126
Entrez Domain: EFFECTOR REGION (POTENTIAL). 39..47
Entrez lipid-binding site: GERANYL-GERANYL (BY 198
Entrez lipid-binding site: GERANYL-GERANYL (BY 199
PFAM ras: Ras family 12..200
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 11..32
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 34..50
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 52..74
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 114..127
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 149..171
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 12..172
PRODOM PD014645: Q40209(1) Q41668(1) RHN1(1) 174..199
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 17..24
__________________
Plus Strand HSPs:
Score = 440 (154.9 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 84/136 (61%), Positives = 110/136 (80%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL KLVLLGD G GKS +V+RFV+GQF + T+GA+F S T+A+ ++T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNAT-VKFEIWDT 66
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS +SF++A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKAD 126
Query: 640 LLEKREVAVQDGTDYA 687
L ++R+V ++ YA
Sbjct: 127 LEDRRKVTAEEARLYA 142
>gi|266879|sp|P29687|RAB5_TOBAC RAS-RELATED PROTEIN RAB5 >gi|100333|pir||S23524
GTP-binding protein Nt-rab5 - common tobacco
>gi|19986|emb|CAA45352.1| (X63875) Nt-rab5 [Nicotiana tabacum]
Length = 200
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 7..152
Entrez np-binding site: GTP (BY SIMILARITY). 17..24
Entrez np-binding site: GTP (BY SIMILARITY). 65..69
Entrez np-binding site: GTP (BY SIMILARITY). 123..126
Entrez Domain: EFFECTOR REGION (POTENTIAL). 39..47
Entrez lipid-binding site: GERANYL-GERANYL (BY 198
Entrez lipid-binding site: GERANYL-GERANYL (BY 199
PFAM ras: Ras family 12..200
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 11..32
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 34..50
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 52..74
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 114..127
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 149..171
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 12..172
PRODOM PD014645: Q40209(1) Q41668(1) RHN1(1) 174..199
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 17..24
__________________
Plus Strand HSPs:
Score = 438 (154.2 bits), Expect = 2.9e-40, P = 2.9e-40
Identities = 84/136 (61%), Positives = 109/136 (80%), Frame = +1
Query: 280 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 459
NL KLVLLGD G GKS +V+RFV+GQF + T+GA+F S T+++ ++T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNAT-VKFEIWDT 66
Query: 460 AGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKAD 639
AGQERY +LAP+YYRGAA A+IVYDITS ES ++A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKAD 126
Query: 640 LLEKREVAVQDGTDYA 687
L +KR+V ++ YA
Sbjct: 127 LEDKRKVTAEEARLYA 142
>gi|400976|sp|P31582|RHA1_ARATH RAS-RELATED PROTEIN RHA1 >gi|478671|pir||S23727
GTP-binding protein RHA1 - Arabidopsis thaliana
>gi|16484|emb|CAA41863.1| (X59152) RHA1 [Arabidopsis thaliana]
>gi|397594|emb|CAA80534.1| (Z22958) GTP-binding protein
[Arabidopsis thaliana] >gi|9758988|dbj|BAB09498.1| (AB019224)
ras-related GTP-binding protein RHA1 [Arabidopsis thaliana]
Length = 200
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 7..152
Entrez np-binding site: GTP (BY SIMILARITY). 17..24
Entrez np-binding site: GTP (BY SIMILARITY). 65..69
Entrez np-binding site: GTP (BY SIMILARITY). 123..126
Entrez Domain: EFFECTOR REGION (POTENTIAL). 39..47
Entrez lipid-binding site: GERANYL-GERANYL (BY 198
Entrez lipid-binding site: GERANYL-GERANYL (BY 199
PFAM ras: Ras family 12..200
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 11..32
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 34..50
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 52..74
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 114..127
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 149..171
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 12..172
PRODOM PD045796: RHA1_ARATH 174..199
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 17..24
__________________
Plus Strand HSPs:
Score = 437 (153.8 bits), Expect = 3.7e-40, P = 3.7e-40
Identities = 84/137 (61%), Positives = 109/137 (79%), Frame = +1
Query: 277 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 456
KN+ KLVLLGD G GKS +VLRFV+ QF + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 7 KNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VKFEIWD 65
Query: 457 TAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKA 636
TAGQERY +LAP+YYRGAA A+IV+DIT+ SF +A+ WV+ELQ G+P++VMAL GNKA
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKA 125
Query: 637 DLLEKREVAVQDGTDYA 687
DLL+ R+V+ ++ YA
Sbjct: 126 DLLDARKVSAEEAEIYA 142
>gi|7438427|pir||T06157 GTP-binding protein F24J7.190 - Arabidopsis thaliana
>gi|2853090|emb|CAA16940.1| (AL021768) small GTP-binding
protein-like [Arabidopsis thaliana] >gi|7268760|emb|CAB78966.1|
(AL161551) small GTP-binding protein-like [Arabidopsis thaliana]
Length = 200
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Plus Strand HSPs:
Score = 433 (152.4 bits), Expect = 9.7e-40, P = 9.7e-40
Identities = 82/137 (59%), Positives = 108/137 (78%), Frame = +1
Query: 277 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 456
K++ KLVLLGD G GKS +VLRFV+ QF + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 7 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VKFEIWD 65
Query: 457 TAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKA 636
TAGQERY +LAP+YYRGAA A+IV+D+T+ SF +A+ WV+ELQ G+P++VMAL GNK+
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 125
Query: 637 DLLEKREVAVQDGTDYA 687
DLL+ R+V +D YA
Sbjct: 126 DLLDARKVTAEDAQTYA 142
>gi|12057010|emb|CAC19792.1| (AJ292320) RAB5A protein [Oryza sativa]
Length = 203
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | || 203
0 50 100 150 200
Plus Strand HSPs:
Score = 431 (151.7 bits), Expect = 1.6e-39, P = 1.6e-39
Identities = 83/141 (58%), Positives = 108/141 (76%), Frame = +1
Query: 265 GQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 444
G +N KLVLLGD G GKS +VLRFV+GQF + T+GA+F SQT+A+ D T VKF
Sbjct: 6 GNKIRN--AKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDET-VKF 62
Query: 445 EIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALV 624
EIWDTAGQERY +LAP+YYRGAA A++VYDIT+ SF++A+ WV+ELQ G+P+ +MAL
Sbjct: 63 EIWDTAGQERYHSLAPMYYRGAAAAIVVYDITNAASFTRAKKWVQELQAQGNPNTIMALA 122
Query: 625 GNKADLLEKREVAVQDGTDYA 687
GNKAD++E R+V ++ YA
Sbjct: 123 GNKADMVEARQVPAEEAKTYA 143
>gi|6517198|dbj|BAA87879.1| (AB035353) Drab5 [Drosophila melanogaster]
>gi|6561903|dbj|BAA88244.1| (AB035671) Rab5 protein [Drosophila
melanogaster] >gi|7295967|gb|AAF51265.1| (AE003583) Rab5 gene
product [Drosophila melanogaster]
Length = 219
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 429 (151.0 bits), Expect = 2.6e-39, P = 2.6e-39
Identities = 86/150 (57%), Positives = 109/150 (72%), Frame = +1
Query: 238 GRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA 417
G NG Q+ K+ + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QTI
Sbjct: 14 GTAQRPNGTSQN-KSCQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTIC 72
Query: 418 LQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHG 597
++D T VKFEIWDTAGQERY +LAP+YYRGA A++VYDI + +SF +A+ WVKEL K
Sbjct: 73 IED-TVVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDIQNQDSFQRAKTWVKELHKQA 131
Query: 598 SPDIVMALVGNKADLLEKREVAVQDGTDYA 687
SP+IV+AL GNKADL R V + YA
Sbjct: 132 SPNIVIALAGNKADLSNIRVVEFDEAKQYA 161
>gi|11420467 ref|XP_009454.1| RAB22A, member RAS oncogene family [Homo sapiens]
Length = 275
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | | 275
0 50 100 150 200 250
Plus Strand HSPs:
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 88/171 (51%), Positives = 117/171 (68%), Frame = +1
Query: 175 KSSPLAMGCGSSLPDRDSRQLGRPNSENGGGQDAKNLR-VKLVLLGDSGVGKSCIVLRFV 351
+++ A G + P LGR + G + A LR +K+ LLGD+GVGKS IV RFV
Sbjct: 49 RAAAAAPGDALAGPGLSLLNLGRRRARAPGSR-AMALRELKVCLLGDTGVGKSSIVWRFV 107
Query: 352 RGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVY 531
FDP T+GASF+++T+ Q+ KF IWDTAGQER+ ALAP+YYRG+A A+IVY
Sbjct: 108 EDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQERFRALAPMYYRGSAAAIIVY 166
Query: 532 DITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
DIT E+FS + WVKEL++HG P+IV+A+ GNK DL++ REV +D DYA
Sbjct: 167 DITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYA 218
>gi|3256092|emb|CAA80473.1| (Z22820) Rab22a protein [Canis familiaris]
Length = 194
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 3.4e-37, P = 3.4e-37
Identities = 78/133 (58%), Positives = 101/133 (75%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+ ALAP+YYRG+A A+IVYDIT E+FS + WVKEL++HG P+IV+A+ GNK DL++
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 649 KREVAVQDGTDYA 687
REV +D DYA
Sbjct: 125 VREVMERDAKDYA 137
>gi|10190714 ref|NP_065724.1| RAB22A, member RAS oncogene family; GTP-binding
protein RAB22A [Homo sapiens] >gi|9961232|gb|AAF00047.2|AF091034_1
(AF091034) GTP-binding protein RAB22A [Homo sapiens]
>gi|11125136|emb|CAC15020.1| (AL035455) dJ1018E9.2 (GTP-binding
protein) [Homo sapiens]
Length = 194
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 3.4e-37, P = 3.4e-37
Identities = 78/133 (58%), Positives = 101/133 (75%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+ ALAP+YYRG+A A+IVYDIT E+FS + WVKEL++HG P+IV+A+ GNK DL++
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 649 KREVAVQDGTDYA 687
REV +D DYA
Sbjct: 125 VREVMERDAKDYA 137
>gi|10636479|emb|CAC10538.1| (AJ276210) GTP-binding protein RAB22A [Homo
sapiens]
Length = 194
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
Plus Strand HSPs:
Score = 409 (144.0 bits), Expect = 3.4e-37, P = 3.4e-37
Identities = 78/133 (58%), Positives = 101/133 (75%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+ ALAP+YYRG+A A+IVYDIT E+FS + WVKEL++HG P+IV+A+ GNK DL++
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 649 KREVAVQDGTDYA 687
REV +D DYA
Sbjct: 125 VREVMERDAKDYA 137
>gi|1710019|sp|P51154|RB22_CANFA RAS-RELATED PROTEIN RAB-22
>gi|631514|pir||S40208 rab22 protein - dog
Length = 194
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
__________________
Annotated Domains:
DOMO DM00006: RASTRANSFORMINGPROTEIN 2..147
Entrez np-binding site: GTP (BY SIMILARITY). 12..19
Entrez np-binding site: GTP (BY SIMILARITY). 60..64
Entrez np-binding site: GTP (BY SIMILARITY). 118..121
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 34..42
Entrez lipid-binding site: GERANYL-GERANYL (BY 193
Entrez lipid-binding site: GERANYL-GERANYL (BY 194
PFAM ras: Ras family 7..194
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 6..27
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 29..45
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 47..69
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 109..122
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 144..166
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..165
PRODOM PD045963: RB22_CANFA 167..193
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 12..19
__________________
Plus Strand HSPs:
Score = 403 (141.9 bits), Expect = 1.5e-36, P = 1.5e-36
Identities = 77/133 (57%), Positives = 100/133 (75%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
E + ALAP+YYRG+A A+IVYDIT E+FS + WVKEL++HG P+IV+A+ GNK DL++
Sbjct: 65 EAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 649 KREVAVQDGTDYA 687
REV +D DYA
Sbjct: 125 VREVMERDAKDYA 137
>gi|9988838|gb|AAG10794.1|AF296447_1 (AF296447) Rab5 [Toxoplasma gondii]
Length = 240
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 395 (139.0 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 84/170 (49%), Positives = 114/170 (67%), Frame = +1
Query: 178 SSPLAMGCGSSLPDRDSRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRG 357
S P G + D DSR + R G+ K L KLVLLGD+ VGKSC+V+RF +
Sbjct: 13 SRPGQSGASGNASDLDSRAVDRTP-----GELPKTLHFKLVLLGDTSVGKSCLVVRFAKD 67
Query: 358 QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDI 537
+F + T+GA+F++Q++ L S VKFEIWDTAGQERY +LAP+YYRGAA AV+VYDI
Sbjct: 68 EFYEYQESTIGAAFMTQSVNL-GSCIVKFEIWDTAGQERYRSLAPMYYRGAAAAVVVYDI 126
Query: 538 TSPESFSKAQYWVKELQK-HGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
++ +SF A+ WV+ELQ + ++V+AL GNK DL +R+V Q+ YA
Sbjct: 127 SNRDSFQGAKSWVQELQSVNDRSNVVIALAGNKEDLAAERQVPKQEAQQYA 177
>gi|6324663 ref|NP_014732.1| small GTP-binding protein; geranylgeranylated;
geranylgeranylation required for membrane association; also
involved in endocytosis post vesicle internalization; Vps21p
[Saccharomyces cerevisiae] >gi|549795|sp|P36017|YP51_YEAST
GTP-BINDING PROTEIN YPT51/VPS21 >gi|626166|pir||S43399 GTP-binding
protein VPS21 - yeast (Saccharomyces cerevisiae)
>gi|441477|emb|CAA82543.1| (Z29338) VPS21 product [Saccharomyces
cerevisiae] >gi|483567|emb|CAA53769.1| (X76173) ypt51p
[Saccharomyces cerevisiae] >gi|1164935|emb|CAA64010.1| (X94335)
YOR3154c [Saccharomyces cerevisiae] >gi|1420257|emb|CAA99285.1|
(Z74997) ORF YOR089c [Saccharomyces cerevisiae]
Length = 210
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 394 (138.7 bits), Expect = 1.3e-35, P = 1.3e-35
Identities = 76/135 (56%), Positives = 104/135 (77%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+KLVLLG++ VGKS IVLRFV F + T+GA+FL+Q + + + T VKFEIWDTAGQ
Sbjct: 8 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQ 66
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+A+LAP+YYR A A++VYD+T P+SF KA++WVKEL + S DI++ALVGNK D+L+
Sbjct: 67 ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 126
Query: 649 K---REVAVQDGTDYA 687
+ R+VA ++G A
Sbjct: 127 EGGERKVAREEGEKLA 142
>gi|549812|sp|P36586|YPT5_SCHPO YPT1-RELATED PROTEIN 5 >gi|422065|pir||S34729
GTP-binding protein ypt5 - fission yeast (Schizosaccharomyces
pombe) >gi|396079|emb|CAA80223.1| (Z22220) ypt5 protein
[Schizosaccharomyces pombe] >gi|2389005|emb|CAB11737.1| (Z98981)
endocytic rab protein [Schizosaccharomyces pombe]
Length = 211
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 211
0 50 100 150 200
Plus Strand HSPs:
Score = 393 (138.3 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 78/147 (53%), Positives = 102/147 (69%), Frame = +1
Query: 250 SENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS 429
+ N ++ + KLVLLGDS VGKS +VLRFV+ QFD + T+GA+FL+QT+ + ++
Sbjct: 2 ASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN 61
Query: 430 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDI 609
T+VK EIWDTAGQERY +LAP+YYR A A++VYDIT S KA+ W+KELQ+ I
Sbjct: 62 TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGI 121
Query: 610 VMALVGNKADLL-EKREVAVQDGTDYA 687
V+AL GNK DL E+R V D YA
Sbjct: 122 VIALAGNKLDLAQERRAVEKADAEAYA 148
>gi|7767071|pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Frame 1 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | 170
0 50 100 150
Plus Strand HSPs:
Score = 388 (136.6 bits), Expect = 5.7e-35, P = 5.7e-35
Identities = 76/135 (56%), Positives = 102/135 (75%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+KLVLLG++ VGKS IVLRFV F + T+GA+FL+Q + + + T VKFEIWDTAGQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQ 62
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+A+LAP YYR A A++VYD+T P+SF KA++WVKEL + S DI++ALVGNK D L+
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 649 K---REVAVQDGTDYA 687
+ R+VA ++G A
Sbjct: 123 EGGERKVAREEGEKLA 138
>gi|542218|pir||A47733 GTP-binding protein ypt5 - fission yeast
(Schizosaccharomyces pombe)
Length = 210
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 21..28
__________________
Plus Strand HSPs:
Score = 385 (135.5 bits), Expect = 1.2e-34, P = 1.2e-34
Identities = 78/146 (53%), Positives = 102/146 (69%), Frame = +1
Query: 250 SENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS 429
+ N ++ + KLVLLGDS VGKS +VLRFV+ QFD + T+GA+FL+QT+ + ++
Sbjct: 2 ASNTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDEN 61
Query: 430 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDI 609
T+VK EIWDTAGQERY +LAP+YYR A A++VYDIT S KA+ W+KELQ+ I
Sbjct: 62 TSVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQA-SLEKAKSWIKELQRQAPEGI 120
Query: 610 VMALVGNKADLL-EKREVAVQDGTDYA 687
V+AL GNK DL E+R V D YA
Sbjct: 121 VIALAGNKLDLAQERRAVEKADAEAYA 147
>gi|5803131 ref|NP_006859.1| RAB31, member RAS oncogene family [Homo sapiens]
>gi|2500069|sp|Q13636|RB31_HUMAN RAS-RELATED PROTEIN RAB-31
>gi|1388195|gb|AAB02832.1| (U59877) low-Mr GTP-binding protein
Rab31 [Homo sapiens] >gi|10179679|gb|AAG13847.1|AF234995_1
(AF234995) small GTPase RAB22B [Homo sapiens]
Length = 194
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
Plus Strand HSPs:
Score = 376 (132.4 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 74/133 (55%), Positives = 98/133 (73%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+ +LAP+YYRG+A AVIVYDIT +SF + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 124
Query: 649 KREVAVQDGTDYA 687
REV ++D +YA
Sbjct: 125 IREVPLKDAKEYA 137
>gi|6093878|sp|Q15770|R22B_HUMAN RAS-RELATED PROTEIN RAB-22B
>gi|2118484|pir||JC4961 rab protein 22B - human
>gi|1457954|gb|AAC50773.1| (U57091) Rab22b [Homo sapiens]
Length = 194
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 12..19
Entrez np-binding site: GTP (BY SIMILARITY). 60..64
Entrez np-binding site: GTP (BY SIMILARITY). 118..121
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 34..42
Entrez lipid-binding site: GERANYL-GERANYL (BY 193
Entrez lipid-binding site: GERANYL-GERANYL (BY 194
PFAM ras: Ras family 7..194
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 7..165
PRODOM PD025985: R22B(1) RB31(1) 167..193
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 12..19
__________________
Plus Strand HSPs:
Score = 376 (132.4 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 74/133 (55%), Positives = 98/133 (73%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+ +LAP+YYRG+A AVIVYDIT +SF + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 124
Query: 649 KREVAVQDGTDYA 687
REV ++D +YA
Sbjct: 125 IREVPLKDAKEYA 137
>gi|9963781|gb|AAG09690.1|AF183421_1 (AF183421) small GTP-binding protein
rab22b [Homo sapiens] >gi|12654623|gb|AAH01148.1|AAH01148
(BC001148) Unknown (protein for MGC:1258) [Homo sapiens]
Length = 195
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 195
0 50 100 150
Plus Strand HSPs:
Score = 376 (132.4 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 74/133 (55%), Positives = 98/133 (73%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 7 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 65
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+ +LAP+YYRG+A AVIVYDIT +SF + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 66 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 125
Query: 649 KREVAVQDGTDYA 687
REV ++D +YA
Sbjct: 126 IREVPLKDAKEYA 138
>gi|9663385|emb|CAB95235.2| (AL359774) probable RAB5B [Leishmania major]
Length = 212
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 212
0 50 100 150 200
Plus Strand HSPs:
Score = 373 (131.3 bits), Expect = 2.2e-33, P = 2.2e-33
Identities = 73/151 (48%), Positives = 101/151 (66%), Frame = +1
Query: 235 LGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI 414
+ R ++ G A + KLVLLG+SGVGKS +V R ++ F TVGASF T
Sbjct: 4 ISRASTTTKAGGSASTRKFKLVLLGESGVGKSSVVQRLMKNAFSEKLNSTVGASFFRYTC 63
Query: 415 ALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKH 594
+ D T V F+IWDTAGQER+ +LA +YYRGAA A++V+DI S ++F KA+YW++ELQ +
Sbjct: 64 NVDDDTAVHFDIWDTAGQERFKSLASMYYRGAAAALVVFDIVSADTFEKARYWIRELQAN 123
Query: 595 GSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
SP+ ++ LVGNK DL +R+V+V D A
Sbjct: 124 -SPETIVMLVGNKKDLESERQVSVADAQQCA 153
>gi|7689359|gb|AAF67746.1|AF254800_1 (AF254800) GTP-binding protein Rab0
[Rattus norvegicus]
Length = 194
Frame 1 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
Plus Strand HSPs:
Score = 371 (130.6 bits), Expect = 3.6e-33, P = 3.6e-33
Identities = 73/133 (54%), Positives = 98/133 (73%), Frame = +1
Query: 289 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 468
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 469 ERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLE 648
ER+ +LAP+YYRG+A AVIVYDIT +SF + WVKEL+++G +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEYGPENIVMAIAGNKCDLSD 124
Query: 649 KREVAVQDGTDYA 687
REV ++D +YA
Sbjct: 125 IREVPLKDAKEYA 137
>gi|1195467|gb|AAC46991.1| (U24678) ras-related protein RAB-5 [Trypanosoma
brucei rhodesiense]
Length = 230
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | | 230
0 50 100 150 200
Plus Strand HSPs:
Score = 357 (125.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 76/152 (50%), Positives = 102/152 (67%), Frame = +1
Query: 268 QDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA----LQD--- 426
QDA + + VLLG+S VGKS I LRF R +F + T+GA+FLS+++ LQ
Sbjct: 11 QDA--ITARTVLLGESAVGKSSIALRFARNEFSSNQETTIGAAFLSRSVTVSATLQSGGG 68
Query: 427 -------STTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKEL 585
S T+KFEIWDTAGQERY +LAP+YYRGA A++VYDITS ES KAQ W++EL
Sbjct: 69 GAVANAASGTIKFEIWDTAGQERYRSLAPIYYRGACGALVVYDITSAESLKKAQMWMREL 128
Query: 586 QKHGSPDIVMALVGNKADLLEKREVAVQDGTDYA 687
+ + P +++ LVGNK D+ R+V+ +DG A
Sbjct: 129 RANADPTLLIILVGNKKDMESLRQVSYEDGAAVA 162
>gi|6324236 ref|NP_014306.1| Ypt53p [Saccharomyces cerevisiae]
>gi|549797|sp|P36019|YP53_YEAST GTP-BINDING PROTEIN YPT53
>gi|626167|pir||S45168 GTP-binding protein YPT53 - yeast
(Saccharomyces cerevisiae) >gi|483436|emb|CAA53771.1| (X76175)
ypt53p [Saccharomyces cerevisiae] >gi|758295|emb|CAA59824.1|
(X85811) ORF N2223 [Saccharomyces cerevisiae]
>gi|1301998|emb|CAA95969.1| (Z71369) ORF YNL093w [Saccharomyces
cerevisiae]
Length = 220
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 353 (124.3 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 70/121 (57%), Positives = 91/121 (75%), Frame = +1
Query: 283 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 462
L +K+VLLG+S VGKS IVLRFV F + + T+GA+FL++ I +D +KFEIWDTA
Sbjct: 11 LTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRIT-RDGKVIKFEIWDTA 69
Query: 463 GQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADL 642
GQER+A LAP+YYR A A++V+D+T+ SF KAQ WV+EL + DIV+ALVGNK DL
Sbjct: 70 GQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDL 129
Query: 643 L 645
L
Sbjct: 130 L 130
>gi|3024500|sp|Q40191|R11A_LOTJA RAS-RELATED PROTEIN RAB11A
>gi|1370142|emb|CAA98177.1| (Z73949) RAB11A [Lotus japonicus]
Length = 226
Frame 1 hits (HSPs): _________________________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | | 226
0 50 100 150 200
__________________
Annotated Domains:
Entrez np-binding site: GTP (BY SIMILARITY). 24..31
Entrez np-binding site: GTP (BY SIMILARITY). 72..76
Entrez np-binding site: GTP (BY SIMILARITY). 130..133
Entrez Domain: EFFECTOR REGION (BY SIMILARITY). 46..54
Entrez lipid-binding site: GERANYL-GERANYL (BY 222
Entrez lipid-binding site: GERANYL-GERANYL (BY 223
PFAM ras: Ras family 19..226
PRINTS RASTRNSFRMNG1: P21 RAS motif I - 3 18..39
PRINTS RASTRNSFRMNG2: P21 RAS motif II - 3 41..57
PRINTS RASTRNSFRMNG3: P21 RAS motif III - 3 59..81
PRINTS RASTRNSFRMNG4: P21 RAS motif IV - 3 121..134
PRINTS RASTRNSFRMNG5: P21 RAS motif V - 3 156..178
PRODOM PD000015: GBA1(22) IF2(15) ARF1(14) 16..178
PRODOM PD012080: 180..225
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 24..31
__________________
Plus Strand HSPs:
Score = 348 (122.5 bits), Expect = 9.9e-31, P = 9.9e-31
Identities = 68/147 (46%), Positives = 98/147 (66%), Frame = +1
Query: 256 NGGGQDAKNLRV----KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ 423
+GGG N ++ K+VL+GDS VGKS I+ RF R +F SK T+G F ++T+ +
Sbjct: 3 SGGGYGDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVI- 61
Query: 424 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSP 603
D TVK +IWDTAGQERY A+ YYRGA A++VYDIT ++F W++EL+ H
Sbjct: 62 DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADK 121
Query: 604 DIVMALVGNKADLLEKREVAVQDGTDYA 687
+IV+ L+GNK DL+ +R+V +D ++A
Sbjct: 122 NIVIILIGNKCDLVNQRDVPTEDAKEFA 149
WARNING: HSPs involving 1388 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.354 0.154 0.648
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.153 0.500
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.320 0.136 0.410
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.351 0.156 0.597
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.155 0.545
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.145 0.487
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 229 227 10. 78 3 12 22 0.11 35
32 0.12 38
+2 0 230 228 10. 78 3 12 22 0.11 35
32 0.12 38
+1 0 230 228 10. 78 3 12 22 0.11 35
32 0.12 38
-1 0 230 228 10. 78 3 12 22 0.11 35
32 0.12 38
-2 0 230 229 10. 78 3 12 22 0.11 35
32 0.12 38
-3 0 229 227 10. 78 3 12 22 0.11 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 1438
No. of states in DFA: 592 (58 KB)
Total size of DFA: 264 KB (320 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:01
No. of threads or processors used: 6
Search cpu time: 244.60u 0.94s 245.54t Elapsed: 00:01:24
Total cpu time: 244.67u 0.97s 245.64t Elapsed: 00:01:25
Start: Thu Jan 17 03:27:18 2002 End: Thu Jan 17 03:28:43 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000