BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query               position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence            begin  end (left)    repeat   class/family  begin  end (left)  ID

  234   0.0  0.0  0.0  SSH1H05.SEQ(1>234)    180  205    (6) +  (A)n     Simple_repeat     1   26    (0)      

Alignments:
234  0.00  0.00  0.00  SSH1H05.SEQ(1>234)  180  205  (6)  (A)n#Simple_repeat  1  26  (154)  5

  SSH1H05.SEQ(1>2    180 AAAAAAAAAAAAAAAAAAAAAAAAAA 205    
                                                   
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAAAAAA 26

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 26), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>SSH1H05.SEQ(1>234)
DSACGGATTTACAGGAATAGATTGCTTTTTGTGCTTTTGGCAAGTATTTT
GGAACACTTATTTTTAGAGTCTCATTGCTTCTTTATCCCCCATTTAATTT
GTAGTTGCTTTATATTCAACAAGACCATAAGACTTATTGATTGTTCACTT
GGTTTTATGACATTTATAGTTTATGGTTTNNNNNNNNNNNNNNNNNNNNN
NNNNNGCTTGT

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       211 bp
GC level:         27.49 %
bases masked:        26 bp ( 12.32 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           26 bp    12.32 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  SSH1H05.SEQ(1>234)
        (211 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 6 Sequences     : less than 6 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 2016 150 |=========================
   6310 1866 200 |=================================
   3980 1666 309 |===================================================
   2510 1357 321 |=====================================================
   1580 1036 249 |=========================================
   1000  787 212 |===================================
    631  575 192 |================================
    398  383  92 |===============
    251  291 109 |==================
    158  182  63 |==========
    100  119  40 |======
   63.1   79  13 |==
   39.8   66  16 |==
   25.1   50  14 |==
   15.8   36  15 |==
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 21  <<<<<<<<<<<<<<<<<
   10.0   21   5 |:
   6.31   16   1 |:
   3.98   15   5 |:
   2.51   10   2 |:
   1.58    8   3 |:
   1.00    5   0 |
   0.63    5   0 |
   0.40    5   4 |:
   0.25    1   0 |
   0.16    1   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|102039|pir||A25877cytochrome-c oxidase (EC 1.9.3.1... +1    61  0.11      2
gi|295783|emb|CAA32647.1|(X14485) ND3 gene product (A... +1    52  0.26      2
gi|128725|sp|P15580|NU3M_PODANNADH-UBIQUINONE OXIDORE... +1    52  0.31      2
gi|4512358|dbj|BAA75323.1|(AB011836) ORF13 [Bacillus ... +1    46  0.31      2
gi|343544|gb|AAA97428.1|(M33228) ATPase 6 [Trypanosom... +2    42  0.32      3
gi|567947|dbj|BAA06415.1|(D30753) 8K protein [Potato ... +1    41  0.69      2
gi|501027|gb|AAA62273.1|(U01849) ORF2 [Trypanosoma br... +1    47  0.71      2
gi|7461369|pir||T17717hypothetical protein A226R - Ch... +3    43  0.74      2
gi|7022000|dbj|BAA91458.1|(AK000996) unnamed protein ... +1    45  0.82      2
gi|4914642|emb|CAB43717.1|(AJ132423) hypothetical pro... +1    61  0.87      1
gi|6226715|sp|O05962|TLCE_RICPRADP,ATP CARRIER PROTEI... +1    53  0.96      2
gi|6968081|emb|CAB75250.1|(AL139075) putative phospha... +2    51  0.96      2
gi|140505|sp|P12174|MATK_MARPOPROBABLE INTRON MATURAS... +2    51  0.96      2
gi|6175535|gb|AAF05075.1|AF124565_1(AF124565) maturas... +1    49  0.96      2
gi|7496072|pir||T15519hypothetical protein C15H9.3 - ... +2    47  0.97      2
gi|2499254|sp|Q35141|NU3M_NEUCRNADH-UBIQUINONE OXIDOR... +1    57  0.996     1
gi|7458952|pir||H72494hypothetical protein APE2599 - ... +3    48  0.999     2
gi|6573761|gb|AAF17681.1|AC009243_8(AC009243) F28K19.... +1    56  0.9990    1
gi|4877757|gb|AAD31420.1|AF124381_1(AF124381) putativ... +3    64  0.9995    1
gi|7507164|pir||T16808hypothetical protein T05C1.2 - ... +1    58  0.9998    1
gi|6425367|emb|CAB60400.1|(AL117207) Y60A3A.15 [Caeno... +2    45  0.9998    2



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|343544              |                              ____________        
gi|567947              |      _________                                   
gi|7461369             |                        _________________         
gi|7022000             |           ___________                            
gi|6226715             |                              ____________        
gi|7496072             |            _____________________________         
gi|7458952             |               _________    ____________          
gi|4877757             |       ___________________________________        
                        __________________________________________________
Query sequence:        |             |             |             |        | 71
                       0            20            40            60


Locus_ID                Frame 2 Hits
gi|102039              | _________                                        
gi|343544              | _________________                                
gi|501027              |    _____                                         
gi|6968081             |         __________________                       
gi|140505              |    ___________                                   
gi|7496072             |   __________                                     
gi|6425367             |     _______                                      
                        __________________________________________________
Query sequence:        |             |             |             |        | 71
                       0            20            40            60


Locus_ID                Frame 1 Hits
gi|102039              |    _____________________________________         
gi|295783              |     _________________            _______         
gi|128725              |     _________________            _______         
gi|4512358             | ________________________________________         
gi|343544              |                  ________                        
gi|567947              |                      ___________________         
gi|501027              |      _____________________                       
gi|7461369             |    ___________                                   
gi|7022000             |                      __________________          
gi|4914642             |             ____________________________         
gi|6226715             |     ______________________                       
gi|6968081             |                          ______________          
gi|140505              |                     _______________              
gi|6175535             |  ____________________ ________________           
gi|2499254             |  ____________________                            
gi|6573761             |        _________________________________         
gi|7507164             |       ________________________                   
gi|6425367             |                    _____________                 
Prosite Hits:                            ________                         
                        __________________________________________________
Query sequence:        |             |             |             |        | 71
                       0            20            40            60
__________________
Prosite hits:
   PROKAR_LIPOPROTEIN   Prokaryotic membrane lipoprotein lipid a 26..36
__________________


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|102039|pir||A25877  cytochrome-c oxidase (EC 1.9.3.1) chain III - Crithidia
            fasciculata mitochondrion (fragment)
            Length = 287

Frame  2 hits (HSPs):          ___                                        
Frame  1 hits (HSPs):                                 ____________        
                        __________________________________________________
Database sequence:     |        |        |       |        |        |      | 287
                       0       50      100     150      200      250

  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 0.12, Sum P(2) = 0.11
 Identities = 23/62 (37%), Positives = 33/62 (53%), Frame = +1

Query:    22 LLFVLLASIL-EHLFLESHC--FFIPHLICSCFIFNKTIRLIDCS------LG-FMTFIV 171
             +LFVL ++IL   LFL +    F +  + CSC +F   + LID        LG F+ FI 
Sbjct:   178 VLFVLWSAILFGFLFLWNQVWEFALLFVTCSCGVFGSILFLIDLLHFSHVLLGIFLLFIC 237

Query:   172 YG 177
             +G
Sbjct:   238 FG 239

 Score = 36 (12.7 bits), Expect = 0.12, Sum P(2) = 0.11
 Identities = 7/12 (58%), Positives = 9/12 (75%), Frame = +2

Query:     8 FTGID-CFLCFW 40
             F  ID CF+CF+
Sbjct:    42 FVFIDYCFVCFF 53


 >gi|295783|emb|CAA32647.1|  (X14485) ND3 gene product (AA 1 - 130) [Podospora
            anserina]
            Length = 130

Frame  1 hits (HSPs):    __________                        ____           
                        __________________________________________________
Database sequence:     |                  |                   |           | 130
                       0                 50                 100

  Plus Strand HSPs:

 Score = 52 (18.3 bits), Expect = 0.30, Sum P(2) = 0.26
 Identities = 11/23 (47%), Positives = 14/23 (60%), Frame = +1

Query:    25 LFVLLASILEHLFLESHCFFIPH 93
             LF+L  SI+  LFL  +  F PH
Sbjct:     6 LFILFVSIIALLFLFINLIFAPH 28

 Score = 31 (10.9 bits), Expect = 0.30, Sum P(2) = 0.26
 Identities = 6/10 (60%), Positives = 7/10 (70%), Frame = +1

Query:   148 LGFMTFIVYG 177
             LGF+T I  G
Sbjct:    93 LGFITIITIG 102


 >gi|128725|sp|P15580|NU3M_PODAN  NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3
            >gi|83834|pir||S02155 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3)
            chain 3 - Podospora anserina mitochondrion
            >gi|14032|emb|CAA38766.1| (X55026) NADH-ubiquinone oxidoreductase
            subunit 3 [Podospora anserina]
            Length = 137

Frame  1 hits (HSPs):    _________                       ____             
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                 |                  |             | 137
                       0                50                100
__________________

Annotated Domains:
   DOMO                 DM00232: NADHDEHYDROGENASE(UBIQUINONE)CH 1..113
   PFAM                 oxidored_q4: NADH-ubiquinone/plastoquino 33..114
   PRODOM               PD012757: NU3M(4) Q9ZZ39(1) YMN3(1)      1..60
   PRODOM               PD001357: NU3M(24) NU3C(8) NQO7(2)       68..111
   PRODOM               PD159245: NU3M_PODAN                     113..136
__________________


  Plus Strand HSPs:

 Score = 52 (18.3 bits), Expect = 0.37, Sum P(2) = 0.31
 Identities = 11/23 (47%), Positives = 14/23 (60%), Frame = +1

Query:    25 LFVLLASILEHLFLESHCFFIPH 93
             LF+L  SI+  LFL  +  F PH
Sbjct:     6 LFILFVSIIALLFLFINLIFAPH 28

 Score = 31 (10.9 bits), Expect = 0.37, Sum P(2) = 0.31
 Identities = 6/10 (60%), Positives = 7/10 (70%), Frame = +1

Query:   148 LGFMTFIVYG 177
             LGF+T I  G
Sbjct:    93 LGFITIITIG 102


 >gi|4512358|dbj|BAA75323.1|  (AB011836) ORF13 [Bacillus halodurans]
            Length = 201

Frame  1 hits (HSPs):     __________           ______                     
                        __________________________________________________
Database sequence:     |            |           |            |           || 201
                       0           50         100          150         200

  Plus Strand HSPs:

 Score = 46 (16.2 bits), Expect = 0.37, Sum P(2) = 0.31
 Identities = 9/22 (40%), Positives = 14/22 (63%), Frame = +1

Query:   109 FIFNKTIRLIDCSLGFMTFIVY 174
             FIFNK   L D ++G   F+++
Sbjct:    95 FIFNKPFALSDIAIGGGLFLLF 116

 Score = 43 (15.1 bits), Expect = 0.37, Sum P(2) = 0.31
 Identities = 13/38 (34%), Positives = 21/38 (55%), Frame = +1

Query:     7 IYRNRLLFVLLASILEHLFLESHCFFIPHLICSCFI-FN 120
             I + ++L   +  I   +F++SH   I  L+ S FI FN
Sbjct:    10 ILQKKMLLTFIPFIGFFIFMDSHPALI-FLVASIFIPFN 47


 >gi|343544|gb|AAA97428.1|  (M33228) ATPase 6 [Trypanosoma brucei]
            Length = 231

Frame  3 hits (HSPs):                                      ____           
Frame  2 hits (HSPs):              _____                                  
Frame  1 hits (HSPs):                             ___                     
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 231
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 42 (14.8 bits), Expect = 0.39, Sum P(3) = 0.32
 Identities = 10/23 (43%), Positives = 13/23 (56%), Frame = +2

Query:     8 FTGIDCFLCFWQVFWNTYF*SLI 76
             F G+  FL  W + +N Y  SLI
Sbjct:    52 FVGLCLFLLLWFMLFNLY--SLI 72

 Score = 36 (12.7 bits), Expect = 0.39, Sum P(3) = 0.32
 Identities = 6/16 (37%), Positives = 10/16 (62%), Frame = +3

Query:   135 Y*LFTWF-YDIYSLWF 179
             Y +F +F Y ++  WF
Sbjct:   166 YFIFVFFFYGVFCYWF 181

 Score = 32 (11.3 bits), Expect = 0.39, Sum P(3) = 0.32
 Identities = 7/13 (53%), Positives = 8/13 (61%), Frame = +1

Query:    79 FFIPHLIC--SCF 111
             FFI  L+C   CF
Sbjct:   122 FFIRFLLCFLECF 134


 >gi|567947|dbj|BAA06415.1|  (D30753) 8K protein [Potato mop-top virus]
            >gi|7801172|emb|CAB91104.1| (AJ277556) cysteine rich protein
            [Potato mop-top virus]
            Length = 68

Frame  3 hits (HSPs):            ________                                 
Frame  1 hits (HSPs):                          ______________________     
                        __________________________________________________
Database sequence:     |             |              |              |      | 68
                       0            20             40             60

  Plus Strand HSPs:

 Score = 41 (14.4 bits), Expect = 1.2, Sum P(2) = 0.69
 Identities = 9/30 (30%), Positives = 14/30 (46%), Frame = +1

Query:    97 ICSCFIFNKTIRLIDCS----LGFMTFIVY 174
             +C C +F   + L  C     LGF+   +Y
Sbjct:    33 VCVCIVFFILVYLSSCYNMRVLGFLRVCIY 62

 Score = 32 (11.3 bits), Expect = 1.2, Sum P(2) = 0.69
 Identities = 5/11 (45%), Positives = 8/11 (72%), Frame = +3

Query:    30 CAFGKYFGTLI 62
             CA G+Y  +L+
Sbjct:    14 CACGRYVSSLL 24


 >gi|501027|gb|AAA62273.1|  (U01849) ORF2 [Trypanosoma brucei]
            Length = 141

Frame  2 hits (HSPs):               ___                                   
Frame  1 hits (HSPs):                                  ___________        
                        __________________________________________________
Database sequence:     |                 |                 |              | 141
                       0                50               100

  Plus Strand HSPs:

 Score = 47 (16.5 bits), Expect = 1.2, Sum P(2) = 0.71
 Identities = 9/30 (30%), Positives = 17/30 (56%), Frame = +1

Query:    28 FVLLASILEHLFLESHCFFIPHLICSCFIF 117
             F L+  +   +F    C+F+ + +C CF+F
Sbjct:    89 FYLVCLVFFCIFCCVLCYFLIYFLC-CFLF 117

 Score = 32 (11.3 bits), Expect = 1.2, Sum P(2) = 0.71
 Identities = 4/5 (80%), Positives = 5/5 (100%), Frame = +2

Query:    23 CFLCF 37
             CF+CF
Sbjct:    37 CFICF 41


 >gi|7461369|pir||T17717  hypothetical protein A226R - Chlorella virus PBCV-1
            >gi|1181389|gb|AAC96594.1| (U42580) A226R [Paramecium bursaria
            Chlorella virus 1]
            Length = 98

Frame  3 hits (HSPs):                                ___________          
Frame  1 hits (HSPs):   ________                                          
                        __________________________________________________
Database sequence:     |         |         |          |         |         | 98
                       0        20        40         60        80

  Plus Strand HSPs:

 Score = 43 (15.1 bits), Expect = 1.4, Sum P(2) = 0.74
 Identities = 5/23 (21%), Positives = 16/23 (69%), Frame = +3

Query:   108 LYIQQDHKTY*LFTWFYDIYSLW 176
             +++++++K +    +F +IY +W
Sbjct:    59 IFVEENYKVF--IPYFREIYDMW 79

 Score = 30 (10.6 bits), Expect = 1.4, Sum P(2) = 0.74
 Identities = 5/15 (33%), Positives = 11/15 (73%), Frame = +1

Query:    22 LLFVLLASILEHLFL 66
             LL + LA++  H+++
Sbjct:     2 LLVMYLAAVFLHVYI 16


 >gi|7022000|dbj|BAA91458.1|  (AK000996) unnamed protein product [Homo sapiens]
            Length = 275

Frame  3 hits (HSPs):                                     ___             
Frame  1 hits (HSPs):                                           _____     
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 275
                       0       50       100      150      200      250

  Plus Strand HSPs:

 Score = 45 (15.8 bits), Expect = 1.7, Sum P(2) = 0.82
 Identities = 8/25 (32%), Positives = 16/25 (64%), Frame = +1

Query:    97 ICSCFIFNKTIRLIDCSLGFMTFIV 171
             IC C+ +  TI ++  +  F+T++V
Sbjct:   223 ICFCWHYAVTIVIVGMNYAFITWLV 247

 Score = 41 (14.4 bits), Expect = 1.7, Sum P(2) = 0.82
 Identities = 6/14 (42%), Positives = 10/14 (71%), Frame = +3

Query:    51 GTLIFRVSLLLYPP 92
             G+  F++  +LYPP
Sbjct:   191 GSWFFQIGFVLYPP 204


 >gi|4914642|emb|CAB43717.1|  (AJ132423) hypothetical protein [Mycoplasma
            agalactiae]
            Length = 106

Frame  1 hits (HSPs):       __________________                            
                        __________________________________________________
Database sequence:     |        |         |        |         |        |   | 106
                       0       20        40       60        80      100

  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 2.0, P = 0.87
 Identities = 17/39 (43%), Positives = 20/39 (51%), Frame = +1

Query:    58 LFLESHCFFIPHLICSCFIFNKTIRLIDCSLGFMTFIVY 174
             +FL    FFI   I S FIFN  I  +  S+GF   I Y
Sbjct:    11 IFLTISFFFI--FILSVFIFNSWINALFPSIGFALMISY 47


 >gi|6226715|sp|O05962|TLCE_RICPR  ADP,ATP CARRIER PROTEIN 5 (ADP/ATP TRANSLOCASE
            5) >gi|7441712|pir||G71633 ADP,ATP carrier protein (tlc5) RP739 -
            Rickettsia prowazekii >gi|3861268|emb|CAA15167.1| (AJ235273)
            ADP,ATP CARRIER PROTEIN (tlc5) [Rickettsia prowazekii]
            Length = 500

Frame  3 hits (HSPs):                                                  ___
Frame  1 hits (HSPs):          ____                                       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |              |              |     | 500
                       0            150            300            450
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         26..46
   Entrez               Transmembrane region: POTENTIAL.         62..82
   Entrez               Transmembrane region: POTENTIAL.         94..114
   Entrez               Transmembrane region: POTENTIAL.         149..169
   Entrez               Transmembrane region: POTENTIAL.         184..204
   Entrez               Transmembrane region: POTENTIAL.         224..244
   Entrez               Transmembrane region: POTENTIAL.         287..307
   Entrez               Transmembrane region: POTENTIAL.         328..348
   Entrez               Transmembrane region: POTENTIAL.         357..377
   Entrez               Transmembrane region: POTENTIAL.         381..401
   Entrez               Transmembrane region: POTENTIAL.         469..489
   PRODOM               PD018367: TLC1(3) TLC2(2)                6..498
__________________


  Plus Strand HSPs:

 Score = 53 (18.7 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 11/31 (35%), Positives = 18/31 (58%), Frame = +1

Query:    25 LFVLL-ASILEHLFLESHCFFIPHLICSCFI 114
             LFV++ A ++ HL  E   +++     SCFI
Sbjct:    77 LFVIIYAKMINHLTFEKIFYYLSAFFISCFI 107

 Score = 36 (12.7 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 5/16 (31%), Positives = 9/16 (56%), Frame = +3

Query:   132 TY*LFTWFYDIYSLWF 179
             T+  F W Y +  ++F
Sbjct:   479 TFVCFAWIYAVRKIYF 494


 >gi|6968081|emb|CAB75250.1|  (AL139075) putative phosphate transport system
            permease protein [Campylobacter jejuni]
            Length = 304

Frame  2 hits (HSPs):               _____                                 
Frame  1 hits (HSPs):                                              ____   
                        __________________________________________________
Database sequence:     |        |       |       |       |       |        || 304
                       0       50     100     150     200     250      300

  Plus Strand HSPs:

 Score = 51 (18.0 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 11/26 (42%), Positives = 18/26 (69%), Frame = +2

Query:    44 VFWNTYF*SLIASLS--PI*FVVALY 115
             +FW T++ SLIA L+  P+  + A+Y
Sbjct:    74 LFWGTFYISLIAMLTALPLGVMCAIY 99

 Score = 33 (11.6 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 6/19 (31%), Positives = 12/19 (63%), Frame = +1

Query:   115 FNKTIRLIDCSLGFMTFIV 171
             F+ ++ L   SLG + F++
Sbjct:   265 FDSSLALSAFSLGLVLFVI 283


 >gi|140505|sp|P12174|MATK_MARPO  PROBABLE INTRON MATURASE >gi|81366|pir||A05034
            hypothetical protein 370i - liverwort (Marchantia polymorpha)
            chloroplast >gi|11663|emb|CAA28076.1| (X04465) ORF370i [Marchantia
            polymorpha]
            Length = 370

Frame  2 hits (HSPs):                        ___                          
Frame  1 hits (HSPs):                                             ____    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                   |         | 370
                       0                  150                 300
__________________

Annotated Domains:
   DOMO                 DM02089:                                 1..370
   PFAM                 MatK_N: MatK/TrnK amino terminal region  1..193
   PFAM                 Intron_maturas2: Type II intron maturase 220..354
   PRODOM               PD012435: MATK(6)                        1..47
   PRODOM               PD082232: MATK_MARPO                     49..107
   PRODOM               PD010538: MATK(6)                        134..197
   PRODOM               PD000337: MATK(15)                       226..285
   PRODOM               PD000345: MATK(15)                       287..320
   PRODOM               PD061026: MATK_MARPO                     322..369
__________________


  Plus Strand HSPs:

 Score = 51 (18.0 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 8/15 (53%), Positives = 11/15 (73%), Frame = +2

Query:    20 DCFLCFWQVFWNTYF 64
             D FL FWQ ++N +F
Sbjct:   160 DFFLIFWQKYFNVWF 174

 Score = 35 (12.3 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 11/22 (50%), Positives = 14/22 (63%), Frame = +1

Query:    91 HLICSCFIFNKTIRLIDCSLGF 156
             +L+ S   FNKT +LI  SL F
Sbjct:   319 NLLTSSIFFNKT-KLI--SLNF 337


 >gi|6175535|gb|AAF05075.1|AF124565_1  (AF124565) maturase K [Gaultheria shallon]
            Length = 501

Frame  1 hits (HSPs):       ____              ___                         
                        __________________________________________________
Database sequence:     |              |              |              |     | 501
                       0            150            300            450

  Plus Strand HSPs:

 Score = 49 (17.2 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 11/29 (37%), Positives = 17/29 (58%), Frame = +1

Query:    13 RNRLLFV--LLASILEHLFLESHCFFIPH 93
             R RL FV  L   +  H++L++H  F P+
Sbjct:    51 RIRLXFVKRLXTHLSTHMYLQNHFLFYPN 79

 Score = 40 (14.1 bits), Expect = 3.2, Sum P(2) = 0.96
 Identities = 8/22 (36%), Positives = 12/22 (54%), Frame = +1

Query:   103 SCFIFNKTIRLIDCSLGFMTFI 168
             S F+F +      CS+ F TF+
Sbjct:   224 SIFVFLRNXSYHICSISFETFL 245


 >gi|7496072|pir||T15519  hypothetical protein C15H9.3 - Caenorhabditis elegans
            >gi|1293840|gb|AAB52663.1| (U56965) weak similarity to G-proetin
            coupled receptors [Caenorhabditis elegans]
            Length = 314

Frame  3 hits (HSPs):           ________                                  
Frame  2 hits (HSPs):   ___                                               
                        __________________________________________________
Database sequence:     |       |       |       |       |       |       |  | 314
                       0      50     100     150     200     250     300

  Plus Strand HSPs:

 Score = 47 (16.5 bits), Expect = 3.6, Sum P(2) = 0.97
 Identities = 5/13 (38%), Positives = 8/13 (61%), Frame = +2

Query:    17 IDCFLCFWQVFWN 55
             +   +C W +FWN
Sbjct:     6 LKALMCIWGIFWN 18

 Score = 37 (13.0 bits), Expect = 3.6, Sum P(2) = 0.97
 Identities = 15/44 (34%), Positives = 20/44 (45%), Frame = +3

Query:    57 LIFRV--SLLLYPPFNL*LLYIQQDHKTY*LFT---WFYDIYSL 173
             L+F V   +L  P F L + Y     K +   T   WF  +YSL
Sbjct:    55 LVFDVPSEILNRPLFRLSVNYDDFPTKLFHFTTYSCWFIQLYSL 98


 >gi|2499254|sp|Q35141|NU3M_NEUCR  NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 3
            >gi|13142|emb|CAA27419.1| (X03793) unidentified reading frame (aa
            1-52) [Neurospora crassa]
            Length = 52

Frame  1 hits (HSPs):   ___________________________                       
                        __________________________________________________
Database sequence:     |                  |                  |            | 52
                       0                 20                 40

  Plus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 5.4, P = 1.0
 Identities = 12/28 (42%), Positives = 17/28 (60%), Frame = +1

Query:    13 RNRLLFVLLASILEHLFLESHCFFIPHL 96
             R+  LF+L  SI+  LFL  +  F PH+
Sbjct:     2 RSMTLFILFVSIIALLFLLINLVFAPHI 29


 >gi|7458952|pir||H72494  hypothetical protein APE2599 - Aeropyrum pernix (strain
            K1) >gi|5106305|dbj|BAA81616.1| (AP000064) 411aa long hypothetical
            protein [Aeropyrum pernix]
            Length = 411

Frame  3 hits (HSPs):                      ___                   ___      
                        __________________________________________________
Database sequence:     |                  |                 |             | 411
                       0                150               300

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 6.6, Sum P(2) = 1.0
 Identities = 8/15 (53%), Positives = 10/15 (66%), Frame = +3

Query:   126 HKTY*LFTWFYDIYS 170
             HK Y L+ WF D+ S
Sbjct:   346 HKFYLLYAWFVDVSS 360

 Score = 36 (12.7 bits), Expect = 6.6, Sum P(2) = 1.0
 Identities = 6/11 (54%), Positives = 9/11 (81%), Frame = +3

Query:    69 VSLLLYPPFNL 101
             + LLLYP +N+
Sbjct:   165 IRLLLYPLYNI 175


 >gi|6573761|gb|AAF17681.1|AC009243_8  (AC009243) F28K19.12 [Arabidopsis
            thaliana]
            Length = 89

Frame  1 hits (HSPs):                 __________________________          
                        __________________________________________________
Database sequence:     |          |          |           |          |     | 89
                       0         20         40          60         80

  Plus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 6.9, P = 1.0
 Identities = 15/47 (31%), Positives = 24/47 (51%), Frame = +1

Query:    37 LASILEHLFLESHCFFIPHLICSCFIFNKTIRLIDCSLGFMTFIVYG 177
             L+S+   +F E H  +I   I   +IF     LID  +  + F++YG
Sbjct:    27 LSSVQVRIF-ERHAVYIKGTIVYKYIFIYMPPLIDFLIFLLCFVIYG 72


 >gi|4877757|gb|AAD31420.1|AF124381_1  (AF124381) putative chemokine receptor
            [Macaca mulatta]
            Length = 344

Frame  3 hits (HSPs):                               _______               
                        __________________________________________________
Database sequence:     |                     |                     |      | 344
                       0                   150                   300

  Plus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 7.6, P = 1.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Frame = +3

Query:    36 FGKYFGTLIFRVSLLLYPPFNL*LLYIQQDHKTY*LFTWFYDIYSLWF 179
             F K+F TL   VS+L++P F    LY+Q   KT       Y ++ L F
Sbjct:   195 FWKHFLTLKMNVSVLVFPLFIFTFLYVQM-RKTLRFGEQRYSLFKLVF 241


 >gi|7507164|pir||T16808  hypothetical protein T05C1.2 - Caenorhabditis elegans
            >gi|861372|gb|AAA68390.1| (U28992) T05C1.2 gene product
            [Caenorhabditis elegans]
            Length = 145

Frame  1 hits (HSPs):              ___________                            
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100

  Plus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 8.4, P = 1.0
 Identities = 14/33 (42%), Positives = 17/33 (51%), Frame = +1

Query:    34 LLASILEHLFLESHCFFIPHLICSCFIFNKTIR 132
             +L+   EHL L  H FF PH     F+F K  R
Sbjct:    33 VLSCFFEHLSLYDHSFF-PHHSSQMFLFLKDSR 64


 >gi|6425367|emb|CAB60400.1|  (AL117207) Y60A3A.15 [Caenorhabditis elegans]
            Length = 252

Frame  2 hits (HSPs):          ___                                        
Frame  1 hits (HSPs):                             ____                    
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 252
                       0        50       100       150       200       250

  Plus Strand HSPs:

 Score = 45 (15.8 bits), Expect = 8.6, Sum P(2) = 1.0
 Identities = 6/9 (66%), Positives = 7/9 (77%), Frame = +2

Query:    26 FLCFWQVFW 52
             F CFW +FW
Sbjct:    39 FHCFWVLFW 47

 Score = 33 (11.6 bits), Expect = 8.6, Sum P(2) = 1.0
 Identities = 7/18 (38%), Positives = 8/18 (44%), Frame = +1

Query:    88 PHLICSCFIFNKTIRLID 141
             PHL+C     N     ID
Sbjct:   134 PHLLCLALFENAEKIFID 151


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.90

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.360   0.168   0.639  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.378   0.173   0.736  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.346   0.157   0.521  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.367   0.160   0.588  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.352   0.152   0.510  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.346   0.151   0.457  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0       69        60       10.  57 3  12 22  0.098   30
                                                    26  0.10    30
   +2      0       70        60       10.  57 3  12 22  0.098   30
                                                    26  0.10    30
   +1      0       70        59       10.  57 3  12 22  0.095   30
                                                    26  0.094   30
   -1      0       70        61       10.  57 3  12 22  0.10    30
                                                    26  0.10    30
   -2      0       70        60       10.  57 3  12 22  0.098   30
                                                    26  0.10    30
   -3      0       69        60       10.  57 3  12 22  0.098   30
                                                    26  0.10    30


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  21
  No. of states in DFA:  573 (56 KB)
  Total size of DFA:  111 KB (128 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  76.37u 0.99s 77.36t  Elapsed: 00:00:38
  Total cpu time:  76.43u 1.03s 77.46t  Elapsed: 00:00:38
  Start:  Wed Feb 14 11:46:23 2001   End:  Wed Feb 14 11:47:01 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000