R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|3776080|emb|CAA77093.1| (Y18249) MtN9 [Medicago truncatula]
Length = 191
Frame -3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Minus Strand HSPs:
Score = 112 (39.4 bits), Expect = 9.6e-06, P = 9.6e-06
Identities = 22/54 (40%), Positives = 36/54 (66%), Frame = -3
Query: 213 PEXQIPDNMSRVFRDSFARWAQASGTLSLT-ATTYDNADIQVGLYHFTNSRIEV 55
PE +I + VFR++F RW+Q + L + AT+YD+ADI++G Y+ + + EV
Sbjct: 16 PESKISIDKVNVFRNAFTRWSQTTRVLKFSEATSYDDADIKIGFYNISYNSKEV 69
>gi|131157|sp|P11601|PSAC_MAIZE PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM I
SUBUNIT VII) (9 KDA POLYPEPTIDE) (PSI-C) >gi|65729|pir||FEZM1C
photosystem I iron-sulfur protein psaC - maize chloroplast
>gi|12423|emb|CAA31557.1| (X13159) 8.7 kDa FeS protein [Zea mays]
>gi|7019728|emb|CAB75860.1| (X86563) psaC; PSI 9kDa protein [Zea
mays] >gi|226549|prf||1601520B psaC gene [Zea mays]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00198: 4Fe-4S ferredoxins, iron-sulfur 10..21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 11
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 14
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 17
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 48
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 51
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 54
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 58
PFAM fer4: 4Fe-4S ferredoxins and related iro 3..65
PRODOM PD000058: FER(33) PSAC(22) NUIM(9) 4..59
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 11..22
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 48..59
__________________
Plus Strand HSPs:
Score = 54 (19.0 bits), Expect = 0.0078, Sum P(2) = 0.0078
Identities = 13/32 (40%), Positives = 17/32 (53%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LGP + R++ Y
Sbjct: 50 GCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
Score = 40 (14.1 bits), Expect = 0.0078, Sum P(2) = 0.0078
Identities = 8/19 (42%), Positives = 13/19 (68%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC + +R P T +LE++ W
Sbjct: 13 GCTHCVRACP-TDVLEMIPW 31
>gi|131164|sp|P10794|PSAC_WHEAT PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM I
SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C) >gi|65727|pir||FERZA
photosystem I iron-sulfur protein psaC - rice chloroplast
>gi|65728|pir||FEWT1 photosystem I iron-sulfur protein psaC - wheat
chloroplast >gi|12051|emb|CAA33954.1| (X15901) PSI 9kDa protein
[Oryza sativa] >gi|12350|emb|CAA31555.1| (X13158) photosystem I 8
kDa subunit [Triticum aestivum] >gi|167038|gb|AAA32953.1| (L06607)
photosystem I subunit C [Hordeum vulgare]
>gi|4150873|emb|CAA09816.1| (AJ011848) PSI 9 kDa protein [Hordeum
vulgare] >gi|226558|prf||1601522B photosystem I 8kD protein
[Triticum aestivum] >gi|226671|prf||1603356CY photosystem I 9kD
protein [Oryza sativa]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00198: 4Fe-4S ferredoxins, iron-sulfur 10..21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 11
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 14
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 17
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 48
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 51
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 54
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 58
PFAM fer4: 4Fe-4S ferredoxins and related iro 3..65
PRINTS 4FE4SFRDOXIN1: 4Fe4S ferredoxin motif I 3..14
PRINTS 4FE4SFRDOXIN2: 4Fe4S ferredoxin motif II 15..26
PRODOM PD000058: FER(33) PSAC(22) NUIM(9) 4..59
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 11..22
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 48..59
__________________
Plus Strand HSPs:
Score = 54 (19.0 bits), Expect = 0.0099, Sum P(2) = 0.0098
Identities = 13/32 (40%), Positives = 17/32 (53%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LGP + R++ Y
Sbjct: 50 GCKRCESACPTDFLSVRVYLGPETTRSMALSY 81
Score = 39 (13.7 bits), Expect = 0.0099, Sum P(2) = 0.0098
Identities = 8/19 (42%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE++ W
Sbjct: 13 GCTQCVRACP-TDVLEMIPW 31
>gi|100633|pir||A32364 photosystem I iron-sulfur protein - barley chloroplast
Length = 80
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): _____________
Annotated Domains: ________________________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
__________________
Annotated Domains:
Entrez domain: ferredoxin 2[4Fe-4S] homology #l 3..65
Entrez binding site: 4Fe-4S cluster (Cys) (cova 10
Entrez binding site: 4Fe-4S cluster (Cys) (cova 13
Entrez binding site: 4Fe-4S cluster (Cys) (cova 16
Entrez binding site: 4Fe-4S cluster (Cys) (cova 57
Entrez binding site: 4Fe-4S cluster (Cys) (cova 20
Entrez binding site: 4Fe-4S cluster (Cys) (cova 47
Entrez binding site: 4Fe-4S cluster (Cys) (cova 50
Entrez binding site: 4Fe-4S cluster (Cys) (cova 53
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 10..21
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 47..58
__________________
Plus Strand HSPs:
Score = 54 (19.0 bits), Expect = 0.0099, Sum P(2) = 0.0098
Identities = 13/32 (40%), Positives = 17/32 (53%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LGP + R++ Y
Sbjct: 49 GCKRCESACPTDFLSVRVYLGPETTRSMALSY 80
Score = 39 (13.7 bits), Expect = 0.0099, Sum P(2) = 0.0098
Identities = 8/19 (42%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE++ W
Sbjct: 12 GCTQCVRACP-TDVLEMIPW 30
>gi|4210390|emb|CAA10625.1| (AJ132264) PSI Fe-S polypeptide SU VII [Skeletonema
costatum]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 48 (16.9 bits), Expect = 0.097, Sum P(2) = 0.093
Identities = 13/32 (40%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R+L Y
Sbjct: 50 GCKRCETACPTDFLSVRVYLGAETTRSLGLAY 81
Score = 40 (14.1 bits), Expect = 0.097, Sum P(2) = 0.093
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|7259570|gb|AAF43871.1|AF166114_83 (AF166114) subunit VII of photosystem I
(Fe-Spolypeptide) [Mesostigma viride]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 48 (16.9 bits), Expect = 0.097, Sum P(2) = 0.093
Identities = 13/32 (40%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG S R++ Y
Sbjct: 50 GCKRCESACPTDFLSVRVYLGNESTRSMGLAY 81
Score = 40 (14.1 bits), Expect = 0.097, Sum P(2) = 0.093
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|165142|gb|AAA31299.1| (M21266) Ig heavy region V-D-region [Oryctolagus
cuniculus]
Length = 72
Frame -1 hits (HSPs): _________
Frame -3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
Minus Strand HSPs:
Score = 49 (17.2 bits), Expect = 0.13, Sum P(2) = 0.12
Identities = 9/20 (45%), Positives = 14/20 (70%), Frame = -3
Query: 168 SFARWAQASGTLSLTATTYD 109
++A WA+ T+S T+TT D
Sbjct: 24 AYASWAKGRFTISKTSTTVD 43
Score = 33 (11.6 bits), Expect = 0.13, Sum P(2) = 0.12
Identities = 7/13 (53%), Positives = 7/13 (53%), Frame = -1
Query: 44 ALYFCNRILVRKG 6
A YFC RI G
Sbjct: 55 ATYFCARIETGSG 67
>gi|165122|gb|AAA64250.1| (K01356) Ig gamma chain (VDJ-region) [Oryctolagus
cuniculus]
Length = 59
Frame -1 hits (HSPs): _______
Frame -3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 59
0 20 40
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 0.26, Sum P(2) = 0.23
Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = -3
Query: 165 FARWAQASGTLSLTATTYD 109
+A WA+ T+S T+TT D
Sbjct: 2 YASWAKGRFTISKTSTTVD 20
Score = 31 (10.9 bits), Expect = 0.26, Sum P(2) = 0.23
Identities = 5/8 (62%), Positives = 6/8 (75%), Frame = -1
Query: 44 ALYFCNRI 21
A YFC R+
Sbjct: 32 ATYFCARV 39
>gi|1346822|sp|P31556|PSAC_EUGGR PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM
I SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C)
>gi|415777|emb|CAA50121.1| (X70810) PSI Fe-S polypeptide [Euglena
gracilis]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00198: 4Fe-4S ferredoxins, iron-sulfur 10..21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 11
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 14
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 17
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 48
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 51
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 54
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 58
PFAM fer4: 4Fe-4S ferredoxins and related iro 3..65
PRINTS 4FE4SFRDOXIN1: 4Fe4S ferredoxin motif I 3..14
PRINTS 4FE4SFRDOXIN2: 4Fe4S ferredoxin motif II 15..26
PRODOM PD000058: FER(33) PSAC(22) NUIM(9) 4..59
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 11..22
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 48..59
__________________
Plus Strand HSPs:
Score = 47 (16.5 bits), Expect = 0.34, Sum P(2) = 0.29
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCESACPTDFLSVRVYLGSETSRSMGLAY 81
Score = 40 (14.1 bits), Expect = 0.34, Sum P(2) = 0.29
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|4261933|gb|AAD14233.1|S76746_1 (S76746) Unknown [Oryctolagus cuniculus]
Length = 115
Frame -1 hits (HSPs): _______
Frame -3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 0.37, Sum P(2) = 0.31
Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = -3
Query: 165 FARWAQASGTLSLTATTYD 109
+A WA+ T+S T+TT D
Sbjct: 58 YASWAKGRFTISKTSTTVD 76
Score = 44 (15.5 bits), Expect = 0.37, Sum P(2) = 0.31
Identities = 8/14 (57%), Positives = 9/14 (64%), Frame = -1
Query: 44 ALYFCNRILVRKGW 3
A YFC R+LV W
Sbjct: 88 ATYFCARVLVVVDW 101
>gi|7524769 ref|NP_045771.1| photosystem I iron-sulfer center
>gi|3024451|sp|P56301|PSAC_CHLVU PHOTOSYSTEM I IRON-SULFUR CENTER
(PHOTOSYSTEM I SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C)
>gi|7430801|pir||T07199 photosystem I iron-sulfur protein psaC -
Chlorella vulgaris chloroplast >gi|2224362|dbj|BAA57846.1|
(AB001684) photosystem I iron-sulfer center [Chlorella vulgaris]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 0.63, Sum P(2) = 0.47
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCESACPTDFLSVRVYLGSETTRSMGLAY 81
Score = 40 (14.1 bits), Expect = 0.63, Sum P(2) = 0.47
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|5880795|gb|AAD54888.1|AF137379_111 (AF137379) subunit VII of photosystem I
(Fe-Spolypeptide) [Nephroselmis olivacea]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 46 (16.2 bits), Expect = 0.63, Sum P(2) = 0.47
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCESACPTDFLSVRVYLGAETTRSMGLAY 81
Score = 40 (14.1 bits), Expect = 0.63, Sum P(2) = 0.47
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|4249376|gb|AAD14473.1| (AC005966) Strong similarity to gi|2829864 F3I6.6
zinc metalloproteinase homolog from Arabidopsis thaliana BAC
gb|AC002396. EST gb|Z26412 comes from this gene
Length = 360
Frame -3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 360
0 150 300
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.68, P = 0.49
Identities = 20/66 (30%), Positives = 35/66 (53%), Frame = -3
Query: 213 PEXQIPDNMSRVFRDSFARWAQASGTLSLTAT-TYDNADIQVGLYHFTNSRIEVYGGSLI 37
P+ + D + RVF +F RWA+ + L+ T + + ADI +G + + E + G++
Sbjct: 165 PQNNLTDEVKRVFSRAFTRWAEVT-PLNFTRSESILRADIVIGFFSGEHGDGEPFDGAMG 223
Query: 36 FLQPDSS 16
L SS
Sbjct: 224 TLAHASS 230
>gi|4895247|gb|AAD32832.1|AC007659_14 (AC007659) putative metalloproteinase
[Arabidopsis thaliana]
Length = 342
Frame -3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 342
0 150 300
Minus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.81, P = 0.56
Identities = 16/53 (30%), Positives = 27/53 (50%), Frame = -3
Query: 198 PDNMSRVFRDSFARWAQASGTLSLTATTYDNADIQVGLYHFTNSRIEVYGGSL 40
P ++ RVFR +F +WA + Y ADI++G ++ + E + G L
Sbjct: 157 PTDIRRVFRRAFGKWASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVL 209
>gi|79662|pir||JT0557 photosystem I iron-sulfur protein - Synechococcus sp
Length = 80
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): _____________
Annotated Domains: ________________________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
__________________
Annotated Domains:
Entrez domain: ferredoxin 2[4Fe-4S] homology #l 3..65
Entrez binding site: 4Fe-4S cluster (Cys) (cova 10
Entrez binding site: 4Fe-4S cluster (Cys) (cova 13
Entrez binding site: 4Fe-4S cluster (Cys) (cova 16
Entrez binding site: 4Fe-4S cluster (Cys) (cova 57
Entrez binding site: 4Fe-4S cluster (Cys) (cova 20
Entrez binding site: 4Fe-4S cluster (Cys) (cova 47
Entrez binding site: 4Fe-4S cluster (Cys) (cova 50
Entrez binding site: 4Fe-4S cluster (Cys) (cova 53
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 10..21
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 47..58
__________________
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.4, Sum P(2) = 0.76
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 49 GCKRCETACPTDFLSIRVYLGAETTRSMGLAY 80
Score = 40 (14.1 bits), Expect = 1.4, Sum P(2) = 0.76
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 12 GCTQCVRACP-TDVLEMVPW 30
>gi|97733|pir||S16200 photosystem I iron-sulfur protein psaC - Calothrix sp.
(PCC 7601) >gi|238432|gb|AAB20251.1| photosystem I (PS I) protein
C=psaC protein [Fremyella diplosiphon, Calothrix sp PCC 7601,
Peptide, 80 aa]
Length = 80
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): _____________
Annotated Domains: ________ ________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
__________________
Annotated Domains:
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 10..21
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 47..58
__________________
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.4, Sum P(2) = 0.76
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 49 GCKRCETACPTDFLSIRVYLGAETTRSMGLAY 80
Score = 40 (14.1 bits), Expect = 1.4, Sum P(2) = 0.76
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 12 GCTQCVRACP-TDVLEMVPW 30
>gi|7299007|gb|AAF54209.1| (AE003678) ato gene product [Drosophila
melanogaster]
Length = 312
Frame -1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 70 (24.6 bits), Expect = 1.5, P = 0.78
Identities = 15/31 (48%), Positives = 18/31 (58%), Frame = -1
Query: 185 VG-CSEIPLRGGPKPRGL*VSRRQPTTTPTS 96
VG C IP GPKP+ + QP+TT TS
Sbjct: 138 VGTCKTIPASAGPKPKRSYTKKNQPSTTATS 168
>gi|131155|sp|P23392|PSAC_ANASP PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM I
SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C) >gi|65731|pir||FEAI1C
photosystem I iron-sulfur protein psaC - Anabaena sp. (strain PCC
7120) >gi|65732|pir||FEAICV photosystem I iron-sulfur protein psaC
- Anabaena variabilis >gi|39045|emb|CAA40443.1| (X57153) PSI-C
protein [Anabaena sp.] >gi|39047|emb|CAA43645.1| (X61369) FA/FB
apoprotein of Photosystem I [Anabaena PCC7120]
>gi|444328|prf||1906377A photosystem I FA/FB protein [Anabaena
variabilis]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00198: 4Fe-4S ferredoxins, iron-sulfur 10..21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 11
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 14
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 17
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 48
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 51
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 54
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 58
PFAM fer4: 4Fe-4S ferredoxins and related iro 3..65
PRINTS 4FE4SFRDOXIN1: 4Fe4S ferredoxin motif I 3..14
PRINTS 4FE4SFRDOXIN2: 4Fe4S ferredoxin motif II 15..26
PRODOM PD000058: FER(33) PSAC(22) NUIM(9) 4..59
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 11..22
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 48..59
__________________
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCETACPTDFLSIRVYLGAETTRSMGLAY 81
Score = 40 (14.1 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|131161|sp|P18083|PSAC_SYNEN PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM I
SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C) >gi|79664|pir||JU0282
photosystem I iron-sulfur protein psaC - Synechococcus sp
>gi|47574|emb|CAA45303.1| (X63767) photosystem I subunit VII
[Synechococcus sp.] >gi|217132|dbj|BAA00468.1| (D00590) PsaC
[Synechococcus vulcanus]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00198: 4Fe-4S ferredoxins, iron-sulfur 10..21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 11
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 14
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 17
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 48
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 51
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 54
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 58
PFAM fer4: 4Fe-4S ferredoxins and related iro 3..65
PRINTS 4FE4SFRDOXIN1: 4Fe4S ferredoxin motif I 3..14
PRINTS 4FE4SFRDOXIN2: 4Fe4S ferredoxin motif II 15..26
PRODOM PD000058: FER(33) PSAC(22) NUIM(9) 4..59
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 11..22
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 48..59
__________________
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCETACPTDFLSIRVYLGAETTRSMGLAY 81
Score = 40 (14.1 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|400861|sp|P23810|PSAC_FREDI PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM I
SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C) >gi|3169798|gb|AAC17972.1|
(AF028734) photosystem I subunit VII; PsaC [Nostoc PCC9229]
>gi|5020113|gb|AAD38029.1|AF148517_2 (AF148517) photosystem I
subunit PsaC [Nostoc PCC8009]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCETACPTDFLSIRVYLGAETTRSMGLAY 81
Score = 40 (14.1 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|3914443|sp|O07112|PSAC_MASLA PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM
I SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C)
>gi|2160758|gb|AAC64638.1| (U97517) photosystem I protein PsaC
[Mastigocladus laminosus]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
__________________
Annotated Domains:
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 11
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 14
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 17
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 48
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 51
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 54
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 58
PFAM fer4: 4Fe-4S ferredoxins and related iro 3..65
PRINTS 4FE4SFRDOXIN1: 4Fe4S ferredoxin motif I 3..14
PRINTS 4FE4SFRDOXIN2: 4Fe4S ferredoxin motif II 15..26
PRODOM PD000058: FER(33) PSAC(22) NUIM(9) 4..59
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 11..22
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 48..59
__________________
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCETACPTDFLSIRVYLGAETTRSMGLAY 81
Score = 40 (14.1 bits), Expect = 1.6, Sum P(2) = 0.79
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|2707667|gb|AAB94702.1| (AF029937) IgM heavy chain VDJ region [Oryctolagus
cuniculus]
Length = 99
Frame -1 hits (HSPs): _____
Frame -3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 99
0 20 40 60 80
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 1.7, Sum P(2) = 0.82
Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = -3
Query: 165 FARWAQASGTLSLTATTYD 109
+A WA+ T+S T+TT D
Sbjct: 62 YATWAKGRFTISKTSTTVD 80
Score = 34 (12.0 bits), Expect = 1.7, Sum P(2) = 0.82
Identities = 6/8 (75%), Positives = 6/8 (75%), Frame = -1
Query: 44 ALYFCNRI 21
A YFC RI
Sbjct: 92 ATYFCTRI 99
>gi|2496512|sp|Q50648|YP73_MYCTU HYPOTHETICAL 26.2 KDA PROTEIN RV2573
>gi|7477262|pir||D70724 hypothetical protein Rv2573 - Mycobacterium
tuberculosis (strain H37RV) >gi|1478239|emb|CAB01270.1| (Z77724)
hypothetical protein Rv2573 [Mycobacterium tuberculosis]
Length = 246
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): ___________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
PRODOM PD007657: APBA(6) 14..243
__________________
Plus Strand HSPs:
Score = 52 (18.3 bits), Expect = 1.9, Sum P(2) = 0.85
Identities = 17/50 (34%), Positives = 25/50 (50%), Frame = +1
Query: 7 PFLTRIRLQKYKAATIHFNPRVSEVVQPYLD----VGVVVGCRRETQSPRG 147
P+LTR+ ++ A + E VQP+ V +V C ETQ P+G
Sbjct: 34 PWLTRLCDERTVVAVLQNGVEQVEQVQPHCPSSAVVPAIVWCSAETQ-PQG 83
Score = 32 (11.3 bits), Expect = 1.9, Sum P(2) = 0.85
Identities = 7/18 (38%), Positives = 10/18 (55%), Frame = +2
Query: 146 AWAHLAKESLNTLLMLSG 199
AW L +L ++LSG
Sbjct: 125 AWRKLLVNALAGFMVLSG 142
>gi|361355|prf||1408204A photosystem I protein [Spinacia oleracea]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 2.0, Sum P(2) = 0.86
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCESRCPTDFLSVRVYLGNETSRSMGLSY 81
Score = 39 (13.7 bits), Expect = 2.0, Sum P(2) = 0.86
Identities = 8/19 (42%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE++ W
Sbjct: 13 GCTQCVRACP-TDVLEMIPW 31
>gi|2914473|pdb|1AYN|3 Chain 3, Human Rhinovirus 16 Coat Protein
>gi|2914540|pdb|1AYM|3 Chain 3, Human Rhinovirus 16 Coat Protein At
High Resolution >gi|5822294|pdb|1QJU|3 Chain 3, Human Rhinovirus 16
Coat Protein In Complex With Antiviral Compound Vp61209
>gi|5822298|pdb|1QJX|3 Chain 3, Human Rhinovirus 16 Coat Protein In
Complex With Antiviral Compound Win68934 >gi|5822302|pdb|1QJY|3
Chain 3, Human Rhinovirus 16 Coat Protein In Complex With Antiviral
Compound Vp65099 >gi|6980417|pdb|1D3E|3 Chain 3, Cryo-Em Structure
Of Human Rhinovirus 16 (Hrv16) Complexed With A Two-Domain Fragment
Of Its Cellular Receptor, Intercellular Adhesion Molecule-1
(D1d2-Icam-1). Implications For Virus-Receptor Interactions. Alpha
Carbons Only
Length = 238
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 238
0 50 100 150 200
Plus Strand HSPs:
Score = 52 (18.3 bits), Expect = 2.2, Sum P(2) = 0.88
Identities = 11/24 (45%), Positives = 16/24 (66%), Frame = +1
Query: 136 SPRGLGPPR-KGISEHPTHVVWDL 204
+P G+G PR + + THVVWD+
Sbjct: 134 TPPGIGKPRSRKEAMLGTHVVWDV 157
Score = 31 (10.9 bits), Expect = 2.2, Sum P(2) = 0.88
Identities = 4/5 (80%), Positives = 5/5 (100%), Frame = +2
Query: 80 WYNPT 94
WY+PT
Sbjct: 27 WYHPT 31
>gi|7516401|pir||E72603 hypothetical protein APE1292 - Aeropyrum pernix (strain
K1) >gi|5104969|dbj|BAA80283.1| (AP000061) 132aa long hypothetical
protein [Aeropyrum pernix]
Length = 132
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 132
0 50 100
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 2.3, P = 0.90
Identities = 12/28 (42%), Positives = 16/28 (57%), Frame = +1
Query: 112 VGCRRETQSPRGLGPPRKGISEHPTHVV 195
V C +E Q P G GPP + E P H++
Sbjct: 32 VYCHQEVQLPLGGGPPYNLLDEAPVHLL 59
>gi|2707669|gb|AAB94703.1| (AF029938) IgM heavy chain VDJ region [Oryctolagus
cuniculus]
Length = 117
Frame -1 hits (HSPs): _______
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 2.5, Sum P(2) = 0.92
Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = -3
Query: 165 FARWAQASGTLSLTATTYD 109
+A WA+ T+S T+TT D
Sbjct: 62 YASWAKGRFTISKTSTTVD 80
Score = 36 (12.7 bits), Expect = 2.5, Sum P(2) = 0.92
Identities = 7/14 (50%), Positives = 8/14 (57%), Frame = -1
Query: 44 ALYFCNRILVRKGW 3
A YFC R+ GW
Sbjct: 92 ATYFCARVS-SSGW 104
>gi|400859|sp|P31173|PSAC_CYAPA PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM I
SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C) >gi|81139|pir||JS0697
photosystem I iron-sulfur protein psaC precursor - Cyanophora
paradoxa cyanelle >gi|336635|gb|AAA65469.1| (M86239) FA/FB protein
[Cyanophora paradoxa] >gi|1016214|gb|AAA81301.1| (U30821) PsaC
subunit of the photosystem I reaction center complex [Cyanophora
paradoxa]
Length = 81
Frame 3 hits (HSPs): _________________
Frame 2 hits (HSPs): ____________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00198: 4Fe-4S ferredoxins, iron-sulfur 10..21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 11
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 14
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 17
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 48
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 51
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 54
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 58
PFAM fer4: 4Fe-4S ferredoxins and related iro 3..65
PRINTS 4FE4SFRDOXIN1: 4Fe4S ferredoxin motif I 3..14
PRINTS 4FE4SFRDOXIN2: 4Fe4S ferredoxin motif II 15..26
PRODOM PD000058: FER(33) PSAC(22) NUIM(9) 4..59
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 11..22
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 48..59
__________________
Plus Strand HSPs:
Score = 44 (15.5 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 11/28 (39%), Positives = 15/28 (53%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL 173
GC+RC P D S R LG + R++
Sbjct: 50 GCKRCESACPTDFLSIRVYLGAETTRSM 77
Score = 40 (14.1 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 9/19 (47%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE+V W
Sbjct: 13 GCTQCVRACP-TDVLEMVPW 31
>gi|2496541|sp|Q50609|YI24_MYCTU HYPOTHETICAL 12.8 KDA PROTEIN RV1824
>gi|7476920|pir||A70721 hypothetical protein Rv1824 - Mycobacterium
tuberculosis (strain H37RV) >gi|1483547|emb|CAB01477.1| (Z78020)
hypothetical protein Rv1824 [Mycobacterium tuberculosis]
Length = 121
Frame 1 hits (HSPs): ________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | 121
0 50 100
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 12..32
Entrez Transmembrane region: POTENTIAL. 35..55
Entrez Transmembrane region: POTENTIAL. 67..87
PRODOM PD031502: SBP(1) YI24(1) 15..117
__________________
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 3.1, P = 0.96
Identities = 11/18 (61%), Positives = 14/18 (77%), Frame = +1
Query: 58 FNPRVSEVVQPYLDVGVV 111
F+P V EV+QPYL + VV
Sbjct: 28 FHPGVPEVIQPYLPIAVV 45
>gi|5880610|gb|AAD54767.1|AF120156_1 (AF120156) endo-1,4-beta-xylanase
[Cellulomonas pachnodae]
Length = 335
Frame -1 hits (HSPs): ____
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 335
0 150 300
Minus Strand HSPs:
Score = 52 (18.3 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 9/17 (52%), Positives = 12/17 (70%), Frame = -1
Query: 113 TTTPTSR*GCTTSLTRG 63
TTTP + GCT +T+G
Sbjct: 242 TTTPPTNNGCTVQVTKG 258
Score = 33 (11.6 bits), Expect = 3.2, Sum P(2) = 0.96
Identities = 5/13 (38%), Positives = 9/13 (69%), Frame = -3
Query: 165 FARWAQASGTLSL 127
++ W A GT+S+
Sbjct: 58 YSFWTDAPGTVSM 70
>gi|131158|sp|P06251|PSAC_MARPO PHOTOSYSTEM I IRON-SULFUR CENTER (PHOTOSYSTEM I
SUBUNIT VII) (9 KD POLYPEPTIDE) (PSI-C) >gi|65726|pir||FELVA
photosystem I iron-sulfur protein psaC - liverwort (Marchantia
polymorpha) chloroplast >gi|11724|emb|CAA28135.1| (X04465) frxA
[Marchantia polymorpha]
Length = 81
Frame 3 hits (HSPs): ____________________
Frame 2 hits (HSPs): ____________
Annotated Domains: _______________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00198: 4Fe-4S ferredoxins, iron-sulfur 10..21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 11
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 14
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 17
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 21
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 48
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 51
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 54
Entrez metal-binding site: IRON-SULFUR (4FE-4S) 58
PFAM fer4: 4Fe-4S ferredoxins and related iro 3..65
PRINTS 4FE4SFRDOXIN1: 4Fe4S ferredoxin motif I 3..14
PRINTS 4FE4SFRDOXIN2: 4Fe4S ferredoxin motif II 15..26
PRODOM PD000058: FER(33) PSAC(22) NUIM(9) 4..59
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 11..22
PROSITE 4FE4S_FERREDOXIN: 4Fe-4S ferredoxins, ir 48..59
__________________
Plus Strand HSPs:
Score = 44 (15.5 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 12/32 (37%), Positives = 16/32 (50%), Frame = +3
Query: 96 GCRRCRRLSP*DSKSPR--LGPTSQRNL*TPY 185
GC+RC P D S R LG + R++ Y
Sbjct: 50 GCKRCESRCPTDFLSVRVYLGNETTRSMGLSY 81
Score = 39 (13.7 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 8/19 (42%), Positives = 12/19 (63%), Frame = +2
Query: 26 GCKN-IRLPPYTSILELVKW 82
GC +R P T +LE++ W
Sbjct: 13 GCTQCVRACP-TDVLEMIPW 31
>gi|7520996|pir||A71058 probable cytosine permease - Pyrococcus horikoshii
>gi|3257576|dbj|BAA30259.1| (AP000005) 422aa long hypothetical
cytosine permease [Pyrococcus horikoshii]
Length = 422
Frame 2 hits (HSPs): ___ _____
__________________________________________________
Database sequence: | | | | 422
0 150 300
Plus Strand HSPs:
Score = 54 (19.0 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 16/37 (43%), Positives = 20/37 (54%), Frame = +2
Query: 95 WMSALS*VVAVRLKV-PEAWAHLAKESLNTLLMLSGIW 205
W+ L +V V V PE W L K S+ L +LSG W
Sbjct: 125 WVIVLGVLVTVWTLVGPERWGWLEKLSVILLAILSG-W 161
Score = 33 (11.6 bits), Expect = 3.4, Sum P(2) = 0.97
Identities = 7/19 (36%), Positives = 10/19 (52%), Frame = +2
Query: 26 GCKNIRLPPYTSILELVKW 82
G K LP + L+L+ W
Sbjct: 84 GGKGSILPSLLNYLQLIGW 102
>gi|7482000|pir||T18357 mhp1 protein - Mycoplasma hyopneumoniae
>gi|1403589|gb|AAB03497.1| (U27294) Mhp1 [Mycoplasma hyopneumoniae]
Length = 1099
Frame -3 hits (HSPs): __ __
__________________________________________________
Database sequence: | | | | | | | | | 1099
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 55 (19.4 bits), Expect = 4.2, Sum P(2) = 0.98
Identities = 9/29 (31%), Positives = 20/29 (68%), Frame = -3
Query: 213 PEXQIPDNMSRVFRDSFARWAQASGTLSL 127
PE ++P+N+ +F+ SFA+ + + +S+
Sbjct: 248 PENKLPNNLGNIFKFSFAKDSSTNQYVSI 276
Score = 40 (14.1 bits), Expect = 4.2, Sum P(2) = 0.98
Identities = 11/37 (29%), Positives = 19/37 (51%), Frame = -3
Query: 111 DNADIQVGLYHFTNSRIEVYGGSLIFLQPDSSKKGVV 1
+ ADIQ H +I G + + QP ++K+ V+
Sbjct: 554 EKADIQRFTRHLEQVKI---GSNSVLNQPQTTKEQVI 587
>gi|7478574|pir||D70610 probable PE protein - Mycobacterium tuberculosis
(strain H37RV) >gi|1929088|emb|CAB07816.1| (Z93777) PE
[Mycobacterium tuberculosis]
Length = 110
Frame -3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Minus Strand HSPs:
Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
Identities = 15/34 (44%), Positives = 18/34 (52%), Frame = -3
Query: 195 DNMSRVFRDSFARWAQASGTLSLTATTYDNADIQ 94
D +S V FAR AQA LSL AT + +Q
Sbjct: 36 DEVSAVVASLFARHAQAYQALSLQATAFHQQFVQ 69
>gi|165174|gb|AAA31315.1| (M29421) Ig mu-chain V-D-J precursor [Oryctolagus
cuniculus]
Length = 125
Frame -1 hits (HSPs): ___
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 125
0 50 100
Minus Strand HSPs:
Score = 49 (17.2 bits), Expect = 4.6, Sum P(2) = 0.99
Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = -3
Query: 165 FARWAQASGTLSLTATTYD 109
+A WA+ T+S T+TT D
Sbjct: 65 YANWAKGRFTISRTSTTVD 83
Score = 31 (10.9 bits), Expect = 4.6, Sum P(2) = 0.99
Identities = 5/8 (62%), Positives = 6/8 (75%), Frame = -1
Query: 44 ALYFCNRI 21
A YFC R+
Sbjct: 96 ATYFCARV 103
>gi|7462968|pir||A72278 transcription regulator, XylR-related - Thermotoga
maritima (strain MSB8) >gi|4981778|gb|AAD36299.1|AE001779_1
(AE001779) transcriptional regulator, XylR-related [Thermotoga
maritima]
Length = 368
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 368
0 150 300
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 6.6, P = 1.0
Identities = 14/38 (36%), Positives = 22/38 (57%), Frame = +1
Query: 70 VSEVVQPYLDVGVVVGCRRETQSPRGLGPPRKGISEHP 183
V E+ + +L+ G+VV E SP+G+G P K + P
Sbjct: 38 VGEIAKIFLEKGIVV---EEKDSPKGVGRPTKSLKISP 72
>gi|7482002|pir||T18353 protein P97 - Mycoplasma hyopneumoniae
>gi|1399525|gb|AAB47806.1| (U50901) P97 [Mycoplasma hyopneumoniae]
Length = 1108
Frame -3 hits (HSPs): __ ___
__________________________________________________
Database sequence: | | | | | | | | | 1108
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 53 (18.7 bits), Expect = 6.7, Sum P(2) = 1.0
Identities = 9/29 (31%), Positives = 19/29 (65%), Frame = -3
Query: 213 PEXQIPDNMSRVFRDSFARWAQASGTLSL 127
PE ++P+N+ +F SFA+ + + +S+
Sbjct: 248 PENKLPNNLGNIFEFSFAKDSSTNQYVSI 276
Score = 40 (14.1 bits), Expect = 6.7, Sum P(2) = 1.0
Identities = 11/37 (29%), Positives = 19/37 (51%), Frame = -3
Query: 111 DNADIQVGLYHFTNSRIEVYGGSLIFLQPDSSKKGVV 1
+ ADIQ H +I G + + QP ++K+ V+
Sbjct: 554 EKADIQRFTRHLEQVKI---GSNSVLNQPQTTKEQVI 587
>gi|1352005|sp|P48987|ATO_DROME ATONAL PROTEIN >gi|476802|pir||A40708
basic-helix-loop-helix protein ato - fruit fly (Drosophila
melanogaster) >gi|551566|gb|AAA21879.1| (L36646) atonal protein
[Drosophila melanogaster]
Length = 312
Frame -1 hits (HSPs): ______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
__________________
Annotated Domains:
Entrez dna-binding site: BASIC DOMAIN. 255..267
Entrez Domain: HELIX-LOOP-HELIX MOTIF (BY SIMIL 268..308
PFAM HLH: Helix-loop-helix DNA-binding domain 256..308
PRODOM PD123677: ATO_DROME 1..254
PRODOM PD000239: MYC(20) MYOD(12) MYCN(7) 256..306
__________________
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 6.7, P = 1.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Frame = -1
Query: 185 VG-CSEIPLRGGPKPRGL*VSRRQPTTTPTS 96
VG C IP PKP+ + QP+TT TS
Sbjct: 138 VGTCKTIPASAAPKPKRSYTKKNQPSTTATS 168
>gi|2194124|gb|AAB61099.1| (AC002062) Similar to Glycine metalloendoproteinase
(gb|U63725). [Arabidopsis thaliana]
Length = 378
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 378
0 150 300
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 6.8, P = 1.0
Identities = 13/58 (22%), Positives = 27/58 (46%), Frame = -3
Query: 213 PEXQIPDNMSRVFRDSFARWAQASGTLSLTATTYDNADIQVGLYHFTNSRIEVYGGSL 40
P+ + + + VF +F RW+ + + ++ +DI +G Y + E + G L
Sbjct: 177 PKNPLTEEVKSVFSRAFGRWSDVTALNFTLSESFSTSDITIGFYTGDHGDGEPFDGVL 234
>gi|3128477|gb|AAC31167.1| (AF062640) metalloproteinase [Arabidopsis thaliana]
Length = 341
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 341
0 150 300
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 7.6, P = 1.0
Identities = 15/48 (31%), Positives = 23/48 (47%), Frame = -3
Query: 183 RVFRDSFARWAQASGTLSLTATTYDNADIQVGLYHFTNSRIEVYGGSL 40
RVFR +F WA + Y ADI++G ++ + E + G L
Sbjct: 161 RVFRRAFGEWASVIPVSFIETEDYVIADIKIGFFNGDHGDGEPFDGVL 208
>gi|2707691|gb|AAB94714.1| (AF029949) IgM heavy chain VDJ region [Oryctolagus
cuniculus]
Length = 133
Frame -1 hits (HSPs): ____
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 133
0 50 100
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 8.3, Sum P(2) = 1.0
Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = -3
Query: 165 FARWAQASGTLSLTATTYD 109
+A WA+ T+S T+TT D
Sbjct: 62 YASWAKGRFTISKTSTTVD 80
Score = 33 (11.6 bits), Expect = 8.3, Sum P(2) = 1.0
Identities = 6/9 (66%), Positives = 7/9 (77%), Frame = -1
Query: 44 ALYFCNRIL 18
A YFC R+L
Sbjct: 92 ATYFCARML 100
>gi|280480|pir||S22449 FPR1 protein - Podospora anserina
>gi|228928|prf||1814445B transcription factor [Podospora anserina]
Length = 365
Frame -3 hits (HSPs): ______
Annotated Domains: ___________
__________________________________________________
Database sequence: | | | | 365
0 150 300
__________________
Annotated Domains:
Entrez domain: HMG box homology #label HMG1 130..204
__________________
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 8.3, P = 1.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Frame = -3
Query: 129 LTATTYDNADIQVGLYHFTNSRIEVYGGSLIFLQPDSSKKGVV 1
LTA +++ IQ+G H+ ++ V + + PD +KKGV+
Sbjct: 69 LTAKYWNHFSIQLG--HWNTLKVIVLDAQMFSIMPDHTKKGVL 109
>gi|102173|pir||A30592 33K cytoskeletal protein - Giardia lamblia (fragment)
Length = 271
Frame -1 hits (HSPs): _____
Frame -3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 271
0 50 100 150 200 250
Minus Strand HSPs:
Score = 50 (17.6 bits), Expect = 9.1, Sum P(2) = 1.0
Identities = 12/27 (44%), Positives = 14/27 (51%), Frame = -3
Query: 195 DNMSRVFRDSFARWAQASGTLSLTATT 115
D M+ FR S RWA S TL + T
Sbjct: 109 DTMAANFRKSLERWATHSTTLRQISRT 135
Score = 34 (12.0 bits), Expect = 9.1, Sum P(2) = 1.0
Identities = 10/25 (40%), Positives = 12/25 (48%), Frame = -1
Query: 116 PTTTPTSR*GCTTSLTRGLKCMVAA 42
P T R CTTS TR + A+
Sbjct: 162 PRRTQKGR-RCTTSSTRRSQTFAAS 185
>gi|3914827|sp|O33431|RPOC_PORCN DNA-DIRECTED RNA POLYMERASE BETA' CHAIN
(TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT)
>gi|2463347|emb|CAA65247.1| (X96383) DNA-dependent RNA polymerase
[Porphyromonas cangingivalis]
Length = 1159
Frame -2 hits (HSPs): __
Frame -3 hits (HSPs): ___
Annotated Domains: __________________________
__________________________________________________
Database sequence: | | | | | | | | | 1159
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
PFAM RNA_pol_A: RNA polymerase alpha subunit 173..757
__________________
Minus Strand HSPs:
Score = 52 (18.3 bits), Expect = 9.3, Sum P(2) = 1.0
Identities = 10/28 (35%), Positives = 16/28 (57%), Frame = -3
Query: 117 TYDNADIQVGLYHFTNSRIEVYGGSLIF 34
T + D+ +GLY+ T R + G L+F
Sbjct: 438 TVPSQDMVLGLYYITKLRKDAKGAGLVF 465
Score = 40 (14.1 bits), Expect = 9.3, Sum P(2) = 1.0
Identities = 5/14 (35%), Positives = 11/14 (78%), Frame = -2
Query: 205 PDPRQHE*GVQRFL 164
P+P+ HE G+ +++
Sbjct: 297 PEPKMHECGLPKYM 310
>gi|2506519|sp|P35693|FPR1_PODAN MAT+ SEXUAL CELL FERTILISATION PROMOTING
FACTOR >gi|1666178|emb|CAA45520.1| (X64195) FPR1 [Podospora
anserina]
Length = 402
Frame -3 hits (HSPs): ______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 402
0 150 300
__________________
Annotated Domains:
DOMO DM00056: HMGBOX 121..194
Entrez dna-binding site: HMG BOX. 169..237
PFAM HMG_box: HMG (high mobility group) box 169..237
PRODOM PD075849: FPR1_PODAN 1..68
PRODOM PD020782: FPR1(1) MATB(1) O42834(1) 70..169
PRODOM PD000156: HMG1(10) HMG2(10) UBF1(7) 171..236
PRODOM PD096350: FPR1_PODAN 238..401
__________________
Minus Strand HSPs:
Score = 64 (22.5 bits), Expect = 9.4, P = 1.0
Identities = 14/43 (32%), Positives = 25/43 (58%), Frame = -3
Query: 129 LTATTYDNADIQVGLYHFTNSRIEVYGGSLIFLQPDSSKKGVV 1
LTA +++ IQ+G H+ ++ V + + PD +KKGV+
Sbjct: 69 LTAKYWNHFSIQLG--HWNTLKVIVLDAQMFSIMPDHTKKGVL 109
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.359 0.161 0.628
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.327 0.138 0.463
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.324 0.143 0.460
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.345 0.152 0.544
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.355 0.166 0.651
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.133 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 71 70 10. 57 3 12 22 0.089 31
27 0.11 31
+2 0 71 70 10. 57 3 12 22 0.089 31
27 0.11 31
+1 0 71 70 10. 57 3 12 22 0.089 31
27 0.11 31
-1 0 71 70 10. 57 3 12 22 0.089 31
27 0.11 31
-2 0 71 70 10. 57 3 12 22 0.089 31
27 0.11 31
-3 0 71 70 10. 57 3 12 22 0.12 30
27 0.11 31
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 45
No. of states in DFA: 577 (57 KB)
Total size of DFA: 124 KB (128 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 110.42u 0.96s 111.38t Elapsed: 00:00:41
Total cpu time: 110.45u 1.05s 111.50t Elapsed: 00:00:42
Start: Wed Feb 14 20:40:49 2001 End: Wed Feb 14 20:41:31 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000