WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract
RepeatMasker Server unavailable.Reference: Gish, Warren (1994-1997). unpublished. Gish, Warren and David J. States (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-72.Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame in the query sequence codes for protein and that significant alignments will involve only coding reading frames.
Query= B08B07.seq(1>550) (519 letters)
Translating both strands of query sequence in all 6 reading framesDatabase: nr 625,274 sequences; 197,782,623 total letters.Observed Numbers of Database Sequences Satisfying Various EXPECTation Thresholds (E parameter values) Histogram units: = 19 Sequences : less than 19 sequences EXPECTation Threshold (E parameter) | V Observed Counts--> 10000 7656 1133 |=========================================================== 6310 6523 897 |=============================================== 3980 5626 844 |============================================ 2510 4782 770 |======================================== 1580 4012 731 |====================================== 1000 3281 594 |=============================== 631 2687 484 |========================= 398 2203 422 |====================== 251 1781 316 |================ 158 1465 268 |============== 100 1197 217 |=========== 63.1 980 205 |========== 39.8 775 125 |====== 25.1 650 135 |======= 15.8 515 95 |===== >>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 420 <<<<<<<<<<<<<<<<< 10.0 420 90 |==== 6.31 330 59 |=== 3.98 271 45 |== 2.51 226 43 |== 1.58 183 39 |== 1.00 144 20 |= 0.63 124 19 |= 0.40 105 17 |: 0.25 88 11 |: 0.16 77 14 |: 0.10 63 10 |: 0.063 53 6 |: 0.040 47 4 |: 0.025 43 2 |: 0.016 41 0 | 0.010 41 1 |: 0.0063 40 5 |: 0.0040 35 1 |: 0.0025 34 2 |: 0.0016 32 2 |: Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N gi|3860272|gb|AAC73040.1|(AC005824) putative AAA-type... +2 693 2.7e-67 1 gi|6579206|gb|AAF18249.1|AC011438_11(AC011438) T23G18... +2 440 1.8e-40 1 gi|10798816|dbj|BAB16447.1|(AP002483) putative AAA-ty... +2 353 2.9e-31 1 gi|5052502|gb|AAD38581.1|AF145606_1(AF145606) BcDNA.G... +2 324 1.1e-30 2 gi|6325431ref|NP_015499.1| AAA-type ATPase; Vps4p [Sa... +2 335 2.4e-29 1 gi|1054845|emb|CAA63364.1|(X92680) allelic to VPS4 [S... +2 334 3.0e-29 1 gi|11425184ref|XP_008741.1| suppressor of K+ transpor... +2 312 6.5e-27 1 gi|6677981ref|NP_033216.1| suppressor of K+ transport... +2 309 1.3e-26 1 gi|4759108ref|NP_004860.1| suppressor of K+ transport... +2 309 1.3e-26 1 gi|5712623|gb|AAD47570.1|AF134119_1(AF134119) SKD1 [M... +2 304 4.5e-26 1 gi|11430565ref|XP_007834.1| similar to vacuolar sorti... +2 302 1.5e-25 1 gi|7019569ref|NP_037377.1| vacuolar sorting protein 4... +2 297 2.6e-25 1 gi|6563218|gb|AAF17203.1|AF112215_1(AF112215) SKD1 pr... +2 297 2.6e-25 1 gi|5381417|gb|AAD42971.1|AF155740_1(AF155740) vacuola... +2 296 3.2e-25 1 gi|1173445|sp|Q09803|SKD1_SCHPOSUPRESSOR PROTEIN OF B... +2 294 5.2e-25 1 gi|6649217|gb|AAF21428.1|AF165422_1(AF165422) suppres... +2 172 1.1e-11 1 gi|5734640|dbj|BAA83371.1|(AP000391) Similar to Arabi... +2 125 2.7e-08 2 gi|7485637|pir||T00863hypothetical protein F17K2.3 - ... +2 140 9.5e-08 1 gi|6754410ref|NP_035965.1| katanin p60 (ATPase-contai... +2 113 2.7e-06 2 gi|12653659|gb|AAH00612.1|AAH00612(BC000612) Unknown ... +2 104 2.8e-05 2 gi|3128218|gb|AAC26698.1|(AC004077) putative katanin ... +2 117 3.7e-05 2 gi|5825592|gb|AAD53310.1|AF177942_1(AF177942) katanin... +2 112 5.5e-05 2 gi|11428328ref|XP_002183.1| Jun dimerization protein ... +1 103 9.1e-05 1 gi|7521287|pir||H72692probable p60 katanin APE0960 - ... +2 119 0.00011 1 gi|5901990ref|NP_008975.1| katanin p60 subunit A 1 [H... +2 107 0.00016 2 gi|1066104|gb|AAC13878.1|(U39735) high molecular weig... +3 116 0.00025 1 gi|6466293|gb|AAF12877.1|AF205377_1(AF205377) p60 kat... +2 116 0.00059 1 gi|6678139ref|NP_033302.1| simple repeat sequence-con... +1 108 0.00076 1 gi|6648606|gb|AAF21247.1|AF048706_1(AF048706) CAD ATP... +2 115 0.00080 1 gi|6015472|dbj|BAA85179.1|(AB032919) dopamine recepto... +3 95 0.00080 1 gi|3098603|gb|AAC15706.1|(AF052191) katanin p60 subun... +2 114 0.0011 1 gi|7299160|gb|AAF54358.1|(AE003682) CG8866 gene produ... +2 114 0.0011 1 gi|1170404|sp|P42145|HSP1_PSECUSPERM PROTAMINE P1 >gi... +1 70 0.0022 2 gi|5689503|dbj|BAA83035.1|(AB029006) KIAA1083 protein... +2 81 0.0024 3 gi|11875211ref|NP_055761.2| spastin [Homo sapiens] >g... +2 81 0.0029 3 gi|1082601|pir||S55461mucin - human (fragment) >gi|85... +3 101 0.0051 1 gi|6630459|gb|AAF19547.1|AC007190_15(AC007190) F23N19... +3 106 0.0059 1 gi|7594619|emb|CAB88114.1|(AL078581) dJ12G14.4 (katan... +2 107 0.0061 1 gi|11418569ref|XP_004304.1| katanin p60 (ATPase-conta... +2 107 0.0061 1 gi|12732306ref|XP_011451.1| katanin p60 subunit A 1 [... +2 107 0.0061 1 gi|7296674|gb|AAF51954.1|(AE003601) CG1193 gene produ... +2 105 0.0094 2 gi|1170390|sp|P42131|HSP1_CAEFUSPERM PROTAMINE P1 >gi... +1 62 0.019 2 gi|7296675|gb|AAF51955.1|(AE003601) CG1193 gene produ... +2 105 0.019 1 gi|4809337|gb|AAD30182.1|AC006530_4(AC006530) unknown... +2 104 0.026 1 gi|479301|pir||S33375homeotic protein Abd-B - desert ... +3 90 0.028 1 gi|11432409ref|XP_005944.1| paired box gene 2 [Homo s... +3 90 0.028 1 gi|9759619|dbj|BAB11561.1|(AB011479) gene_id:MNA5.12~... +3 89 0.037 1 gi|1582120|prf||2117429Nprotamine P1 [Pseudochirops c... +1 71 0.040 2 gi|12230605|sp|Q9QYY8|SPAS_MOUSESPASTIN >gi|6273572|e... +2 87 0.044 2 gi|1076211|pir||S50755hypothetical protein VSP-3 - Ch... +3 101 0.049 1
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WARNING: Descriptions of 370 database sequences were not reported due to the limiting value of parameter V = 50.>gi|3860272|gb|AAC73040.1| (AC005824) putative AAA-type ATPase [Arabidopsis thaliana] Length = 435 Frame 2 hits (HSPs): __________________ __________________________________________________ Database sequence: | | | | 435 0 150 300 Plus Strand HSPs: Score = 693 (243.9 bits), Expect = 2.7e-67, P = 2.7e-67 Identities = 137/153 (89%), Positives = 143/153 (93%), Frame = +2 Query: 41 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFT 220 MYSNFKEQAIEYVKQAV EDN GNY KAF LYMNALEYFKTHLKYEKNPKI+EAITQKFT Sbjct: 1 MYSNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT 60 Query: 221 EYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDG-DGEDPEQAKLRAGLNS 397 EYLRRAEEIRAVLD+G SGP S+GDAAVATRPKTKPKDG G DGEDPEQ+KLRAGLNS Sbjct: 61 EYLRRAEEIRAVLDEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLNS 120 Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 AIVREKPN+KW+DVAGLESAKQALQEAVILPVK Sbjct: 121 AIVREKPNIKWSDVAGLESAKQALQEAVILPVK 153
>gi|6579206|gb|AAF18249.1|AC011438_11 (AC011438) T23G18.12 [Arabidopsis thaliana] Length = 126 Frame 2 hits (HSPs): _____________________________________________ __________________________________________________ Database sequence: | | | | 126 0 50 100 Plus Strand HSPs: Score = 440 (154.9 bits), Expect = 1.8e-40, P = 1.8e-40 Identities = 92/119 (77%), Positives = 103/119 (86%), Frame = +2 Query: 137 MNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRP 316 MNALEYFK +LKYEKNP+I++AIT KF EYLRRAEEIRAVL + SG S+GDAAVAT+P Sbjct: 1 MNALEYFKIYLKYEKNPRIRDAITDKFYEYLRRAEEIRAVLVEVGSGKGSNGDAAVATKP 60 Query: 317 KTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 KTKPKDGG DG E++KLRAGLNSAI+REKPNVKW VAGLESAKQAL+EAVILPV Sbjct: 61 KTKPKDGG-DG-----EESKLRAGLNSAIIREKPNVKWTVVAGLESAKQALKEAVILPV 113
>gi|10798816|dbj|BAB16447.1| (AP002483) putative AAA-type ATPase [Oryza sativa] Length = 411 Frame 2 hits (HSPs): ________________ __________________________________________________ Database sequence: | | | | 411 0 150 300 Plus Strand HSPs: Score = 353 (124.3 bits), Expect = 2.9e-31, P = 2.9e-31 Identities = 71/93 (76%), Positives = 76/93 (81%), Frame = +2 Query: 41 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFT 220 MYSNFKEQAIEYVKQAV EDN GNY KAF LYMNALEYFKTHLKYEK+PKIK+AI KFT Sbjct: 1 MYSNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYEKDPKIKDAIAAKFT 60 Query: 221 EYLRRAEEIRAVLDDGPSGPASSGDAAVATRPK 319 EYLRRAEEIRAVLD G GD+ A +P+ Sbjct: 61 EYLRRAEEIRAVLDGHIGGGGGGGDSEQA-KPR 92 Score = 177 (62.3 bits), Expect = 6.7e-12, P = 6.7e-12 Identities = 39/57 (68%), Positives = 43/57 (75%), Frame = +2 Query: 332 DG--GKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 DG G G G D EQAK R L SAIV KP+VKW+DVAGLESAK+ALQEA ILP+K Sbjct: 74 DGHIGGGGGGGDSEQAKPRGMLRSAIVAAKPSVKWSDVAGLESAKEALQEAAILPIK 130
>gi|5052502|gb|AAD38581.1|AF145606_1 (AF145606) BcDNA.GH02678 [Drosophila melanogaster] >gi|7293406|gb|AAF48783.1| (AE003507) BcDNA:GH02678 gene product [Drosophila melanogaster] Length = 442 Frame 2 hits (HSPs): __________________ Frame 1 hits (HSPs): __ __________________________________________________ Database sequence: | | | | 442 0 150 300 Plus Strand HSPs: Score = 324 (114.1 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30 Identities = 68/146 (46%), Positives = 97/146 (66%), Frame = +2 Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235 ++AI+ V +A +ED NYA+A +LY + +EYF +KYE + K K++I K +YL R Sbjct: 8 QKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQGEKAKDSIRAKCLQYLDR 67 Query: 236 AEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREK 415 AE+++ L G P G + A K K D D DG+DPE+ KL++ L AIV EK Sbjct: 68 AEKLKEYLKKGKKKPIKEGGESSAKDDKDKKSDSD-DEDGDDPEKKKLQSKLEDAIVIEK 126 Query: 416 PNVKWNDVAGLESAKQALQEAVILPVK 496 P V+W+DVAGL++AK+AL+EAVILP+K Sbjct: 127 PKVQWSDVAGLDAAKEALKEAVILPIK 153 Score = 39 (13.7 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30 Identities = 8/11 (72%), Positives = 10/11 (90%), Frame = +1 Query: 487 AREEAVILPVK 519 A +EAVILP+K Sbjct: 143 ALKEAVILPIK 153
>gi|6325431 ref|NP_015499.1| AAA-type ATPase; Vps4p [Saccharomyces cerevisiae] >gi|1706647|sp|P52917|VPS4_YEAST VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS4 (END13 PROTEIN) >gi|2131247|pir||S59831 END13 protein - yeast (Saccharomyces cerevisiae) >gi|786322|gb|AAB68107.1| (U25842) Similar to several members of the Cdc48/Pas1/Sec18 family of proteins (Swiss Prot. accession numbers P25694, P24004, P18759) [Saccharomyces cerevisiae] Length = 437 Frame 2 hits (HSPs): __________________ __________________________________________________ Database sequence: | | | | 437 0 150 300 Plus Strand HSPs: Score = 335 (117.9 bits), Expect = 2.4e-29, P = 2.4e-29 Identities = 74/150 (49%), Positives = 98/150 (65%), Frame = +2 Query: 50 NFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYL 229 +F + IE V++A+D D Y +A+ Y N L+Y LKYEKNPK K+ I KFTEYL Sbjct: 5 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYL 64 Query: 230 RRAEEIRAVLDDGPSGPA----SSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNS 397 RAE+++ L+ + A S+G + K ++G +D GED + KLR L+S Sbjct: 65 NRAEQLKKHLESEEANAAKKSPSAGSGSNGGNKKISQEEG-EDNGGEDNK--KLRGALSS 121 Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 AI+ EKPNVKW DVAGLE AK+AL+EAVILPVK Sbjct: 122 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVK 154
>gi|1054845|emb|CAA63364.1| (X92680) allelic to VPS4 [Saccharomyces cerevisiae] Length = 437 Frame 2 hits (HSPs): __________________ __________________________________________________ Database sequence: | | | | 437 0 150 300 Plus Strand HSPs: Score = 334 (117.6 bits), Expect = 3.0e-29, P = 3.0e-29 Identities = 74/150 (49%), Positives = 98/150 (65%), Frame = +2 Query: 50 NFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYL 229 +F + IE V++A+D D Y +A+ Y N L+Y LKYEKNPK K+ I KFTEYL Sbjct: 5 DFLTKGIELVQKAIDLDTATQYEEAYTSYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYL 64 Query: 230 RRAEEIRAVLDDGPSGPA----SSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNS 397 RAE+++ L+ + A S+G + K ++G +D GED + KLR L+S Sbjct: 65 NRAEQLKKHLESEEANAAKKSPSAGSGSNGGNKKISQEEG-EDNGGEDNK--KLRGALSS 121 Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 AI+ EKPNVKW DVAGLE AK+AL+EAVILPVK Sbjct: 122 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVK 154
>gi|11425184 ref|XP_008741.1| suppressor of K+ transport defect 1 [Homo sapiens] >gi|9885650|gb|AAG01471.1|AF282904_1 (AF282904) vacuolar protein sorting factor 4B [Homo sapiens] >gi|11225485|gb|AAG33022.1|AF195514_1 (AF195514) VPS4-2 ATPase [Homo sapiens] Length = 444 Frame 2 hits (HSPs): __________________ __________________________________________________ Database sequence: | | | | 444 0 150 300 Plus Strand HSPs: Score = 312 (109.8 bits), Expect = 6.5e-27, P = 6.5e-27 Identities = 69/147 (46%), Positives = 96/147 (65%), Frame = +2 Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235 ++AI+ +A ED GNY +A QLY +A++YF +KYE + K K++I K TEYL R Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68 Query: 236 AEEIRAVL---DDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIV 406 AE+++ L + P G + A K DG +G+ +DPE+ KL+ L AIV Sbjct: 69 AEKLKEYLKNKEKKAQKPVKEGQPSPADE-KGNDSDG--EGESDDPEKKKLQNQLQGAIV 125 Query: 407 REKPNVKWNDVAGLESAKQALQEAVILPVK 496 E+PNVKW+DVAGLE AK+AL+EAVILP+K Sbjct: 126 IERPNVKWSDVAGLEGAKEALKEAVILPIK 155
>gi|6677981 ref|NP_033216.1| suppressor of K+ transport defect 1 [Mus musculus] >gi|1173444|sp|P46467|SKD1_MOUSE SKD1 PROTEIN >gi|1083520|pir||S48696 suppressor protein SKD1 - mouse >gi|557876|gb|AAA50497.1| (U10119) SKD1 [Mus musculus] Length = 444 Frame 2 hits (HSPs): __________________ __________________________________________________ Database sequence: | | | | 444 0 150 300 Plus Strand HSPs: Score = 309 (108.8 bits), Expect = 1.3e-26, P = 1.3e-26 Identities = 66/147 (44%), Positives = 92/147 (62%), Frame = +2 Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235 ++AI+ +A ED GNY +A QLY +A++YF +KYE + K K++I K TEYL R Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68 Query: 236 AEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREK 415 AE+++ L P A + K D + + +DPE+ KL+ L AIV E+ Sbjct: 69 AEKLKEYLKKKEKKPQKPVKEAQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIER 128 Query: 416 PNVKWNDVAGLESAKQALQEAVILPVK 496 PNVKW+DVAGLE AK+AL+EAVILP+K Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIK 155
>gi|4759108 ref|NP_004860.1| suppressor of K+ transport defect 1; mouse SKD1 homolog [Homo sapiens] >gi|9087199|sp|O75351|SKD1_HUMAN SKD1 PROTEIN >gi|3329390|gb|AAC39874.1| (AF038960) SKD1 homolog [Homo sapiens] Length = 444 Frame 2 hits (HSPs): __________________ __________________________________________________ Database sequence: | | | | 444 0 150 300 Plus Strand HSPs: Score = 309 (108.8 bits), Expect = 1.3e-26, P = 1.3e-26 Identities = 68/147 (46%), Positives = 96/147 (65%), Frame = +2 Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235 ++AI+ +A ED GNY +A QLY +A++YF +KYE + K K++I K TEYL R Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68 Query: 236 AEEIRAVL---DDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIV 406 AE+++ L + P G + A K DG +G+ +DPE+ KL+ L AIV Sbjct: 69 AEKLKEYLKNKEKKAQKPVKEGQPSPADE-KGNDSDG--EGESDDPEKRKLQNQLQGAIV 125 Query: 407 REKPNVKWNDVAGLESAKQALQEAVILPVK 496 ++PNVKW+DVAGLE AK+AL+EAVILP+K Sbjct: 126 IDRPNVKWSDVAGLEGAKEALKEAVILPIK 155
>gi|5712623|gb|AAD47570.1|AF134119_1 (AF134119) SKD1 [Mus musculus] Length = 444 Frame 2 hits (HSPs): __________________ __________________________________________________ Database sequence: | | | | 444 0 150 300 Plus Strand HSPs: Score = 304 (107.0 bits), Expect = 4.5e-26, P = 4.5e-26 Identities = 65/147 (44%), Positives = 91/147 (61%), Frame = +2 Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235 ++AI+ +A ED GNY +A QLY +A++YF +KYE + K K++I K TEYL R Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68 Query: 236 AEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREK 415 AE+++ L P + K D + + +DPE+ KL+ L AIV E+ Sbjct: 69 AEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIER 128 Query: 416 PNVKWNDVAGLESAKQALQEAVILPVK 496 PNVKW+DVAGLE AK+AL+EAVILP+K Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIK 155
>gi|11430565 ref|XP_007834.1| similar to vacuolar sorting protein 4 (H. sapiens) [Homo sapiens] >gi|12739351 ref|XP_012484.1| vacuolar sorting protein 4 [Homo sapiens] >gi|12739355 ref|XP_012486.1| similar to vacuolar sorting protein 4 (H. sapiens) [Homo sapiens] Length = 479 Frame 2 hits (HSPs): ________________ __________________________________________________ Database sequence: | | | | | 479 0 150 300 450 Plus Strand HSPs: Score = 302 (106.3 bits), Expect = 1.5e-25, P = 1.5e-25 Identities = 66/153 (43%), Positives = 98/153 (64%), Frame = +2 Query: 38 EMYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNP-KIKEAITQK 214 EM ++ ++AI+ V +A +ED NY +A +LY +A+EYF +KYE + K KE+I K Sbjct: 42 EMTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAK 101 Query: 215 FTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLN 394 +YL RAE+++ L G V +++ K D +G++PE+ KL+ L Sbjct: 102 CVQYLDRAEKLKDYL----RSKEKHGKKPVKEN-QSEGKGSDSDSEGDNPEKKKLQEQLM 156 Query: 395 SAIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 A+V EKPN++WNDVAGLE AK+AL+EAVILP+K Sbjct: 157 GAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIK 190
>gi|7019569 ref|NP_037377.1| vacuolar sorting protein 4 [Homo sapiens] >gi|5732691|gb|AAD49227.1|AF159063_1 (AF159063) SKD1-homolog [Homo sapiens] >gi|9885648|gb|AAG01470.1|AF282903_1 (AF282903) vacuolar protein sorting factor 4A [Homo sapiens] Length = 437 Frame 2 hits (HSPs): _________________ __________________________________________________ Database sequence: | | | | 437 0 150 300 Plus Strand HSPs: Score = 297 (104.5 bits), Expect = 2.6e-25, P = 2.6e-25 Identities = 65/152 (42%), Positives = 97/152 (63%), Frame = +2 Query: 41 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNP-KIKEAITQKF 217 M ++ ++AI+ V +A +ED NY +A +LY +A+EYF +KYE + K KE+I K Sbjct: 1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC 60 Query: 218 TEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNS 397 +YL RAE+++ L G V +++ K D +G++PE+ KL+ L Sbjct: 61 VQYLDRAEKLKDYL----RSKEKHGKKPVKEN-QSEGKGSDSDSEGDNPEKKKLQEQLMG 115 Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 A+V EKPN++WNDVAGLE AK+AL+EAVILP+K Sbjct: 116 AVVMEKPNIRWNDVAGLEGAKEALKEAVILPIK 148
>gi|6563218|gb|AAF17203.1|AF112215_1 (AF112215) SKD1 protein [Homo sapiens] Length = 437 Frame 2 hits (HSPs): _________________ __________________________________________________ Database sequence: | | | | 437 0 150 300 Plus Strand HSPs: Score = 297 (104.5 bits), Expect = 2.6e-25, P = 2.6e-25 Identities = 65/152 (42%), Positives = 97/152 (63%), Frame = +2 Query: 41 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNP-KIKEAITQKF 217 M ++ ++AI+ V +A +ED NY +A +LY +A+EYF +KYE + K KE+I K Sbjct: 1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC 60 Query: 218 TEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNS 397 +YL RAE+++ L G V +++ K D +G++PE+ KL+ L Sbjct: 61 VQYLDRAEKLKDYL----RSKEEHGKKPVKEN-QSEGKGSDSDSEGDNPEKKKLQEQLMG 115 Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 A+V EKPN++WNDVAGLE AK+AL+EAVILP+K Sbjct: 116 AVVMEKPNIRWNDVAGLEGAKEALKEAVILPIK 148
>gi|5381417|gb|AAD42971.1|AF155740_1 (AF155740) vacuolar sorting protein 4 [Homo sapiens] Length = 432 Frame 2 hits (HSPs): _________________ __________________________________________________ Database sequence: | | | | 432 0 150 300 Plus Strand HSPs: Score = 296 (104.2 bits), Expect = 3.2e-25, P = 3.2e-25 Identities = 64/146 (43%), Positives = 94/146 (64%), Frame = +2 Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNP-KIKEAITQKFTEYLRR 235 ++AI+ V +A +ED NY +A +LY +A+EYF +KYE + K KE+I K +YL R Sbjct: 2 QKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDR 61 Query: 236 AEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREK 415 AE+++ L G V +++ K D +G++PE+ KL+ L A+V EK Sbjct: 62 AEKLKDYL----RSKEKHGKKPVKEN-QSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEK 116 Query: 416 PNVKWNDVAGLESAKQALQEAVILPVK 496 PN++WNDVAGLE AK+AL+EAVILP+K Sbjct: 117 PNIRWNDVAGLEGAKEALKEAVILPIK 143
>gi|1173445|sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 DOUBLE MUTANTS >gi|2130392|pir||S62461 probable AAA-family ATPase, supressor protein - fission yeast (Schizosaccharomyces pombe) >gi|7492345|pir||T38572 probable AAA-family ATPase - fission yeast (Schizosaccharomyces pombe) >gi|496311|gb|AAA35347.1| (L33456) supressor protein [Schizosaccharomyces pombe] >gi|1019404|emb|CAA91171.1| (Z54354) putative AAA-family ATPase [Schizosaccharomyces pombe] Length = 432 Frame 2 hits (HSPs): __________________ Annotated Domains: __________________________________________________ __________________________________________________ Database sequence: | | | | 432 0 150 300 __________________ Annotated Domains: BLOCKS BL00674A: AAA-protein family proteins. 128..148 BLOCKS BL00674B: AAA-protein family proteins. 162..183 BLOCKS BL00674C: AAA-protein family proteins. 195..237 BLOCKS BL00674D: AAA-protein family proteins. 252..298 BLOCKS BL00674E: AAA-protein family proteins. 329..348 DOMO DM03409: 1..121 DOMO DM00024: AAA-PROTEINFAMILY 123..281 DOMO DM00076: AAA-PROTEINFAMILY 283..360 DOMO DM03446: 362..431 Entrez np-binding site: ATP (POTENTIAL). 169..176 PFAM AAA: ATPases associated with various cel 164..348 PRODOM PD019381: SKD1(2) EN13(1) Q9ZNT0(1) 2..66 PRODOM PD094515: SKD1_SCHPO 68..118 PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 120..314 PRODOM PD022006: SKD1(2) EN13(1) O75351(1) 316..431 PROSITE AAA: AAA-protein family signature. 266..284 PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 169..176 __________________ Plus Strand HSPs: Score = 294 (103.5 bits), Expect = 5.2e-25, P = 5.2e-25 Identities = 63/145 (43%), Positives = 89/145 (61%), Frame = +2 Query: 62 QAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAE 241 +AI VK A+D DN Y A++ Y +AL+YF LKYEKN K KE I K EYL RAE Sbjct: 9 KAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAE 68 Query: 242 EIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPN 421 +++ L + + SS + + + + D + KLR+ L SAI+ EKPN Sbjct: 69 KLKVYLQE-KNNQISSKSRV--SNGNVEGSNSPTANEALDSDAKKLRSALTSAILVEKPN 125 Query: 422 VKWNDVAGLESAKQALQEAVILPVK 496 V+W+D+AGLE+AK+AL+E V+LP+K Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIK 150
>gi|6649217|gb|AAF21428.1|AF165422_1 (AF165422) suppressor of K+ transport growth defect-like protein [Mesembryanthemum crystallinum] Length = 317 Frame 2 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | | | | | 317 0 50 100 150 200 250 300 Plus Strand HSPs: Score = 172 (60.5 bits), Expect = 1.1e-11, P = 1.1e-11 Identities = 34/35 (97%), Positives = 35/35 (100%), Frame = +2 Query: 392 NSAIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 NSAI+REKPNVKWNDVAGLESAKQALQEAVILPVK Sbjct: 1 NSAIIREKPNVKWNDVAGLESAKQALQEAVILPVK 35
>gi|5734640|dbj|BAA83371.1| (AP000391) Similar to Arabidopsis thaliana chromosome II BAC F17K2 genomic sequence; hypothetical protein (AC003680) [Oryza sativa] Length = 427 Frame 3 hits (HSPs): __________ Frame 2 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | 427 0 150 300 Plus Strand HSPs: Score = 125 (44.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08 Identities = 26/43 (60%), Positives = 30/43 (69%), Frame = +2 Query: 374 KLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKKR 502 KL +N+ IV P VKW DVAGL+ AKQAL E VILP K+R Sbjct: 166 KLVEMINTTIVDRSPAVKWEDVAGLDKAKQALMEMVILPTKRR 208 Score = 40 (14.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08 Identities = 18/56 (32%), Positives = 19/56 (33%), Frame = +3 Query: 162 RTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSP 329 R STRR +S R RN SA G T P R S P P Sbjct: 81 RLGSTRRRSQSGRLRWRNDSGCSA----RGVVVTNNPVNRNDRAASTSFHRPTSQP 132 Score = 39 (13.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08 Identities = 8/29 (27%), Positives = 15/29 (51%), Frame = +3 Query: 198 RPSLRNSPSISAGPRRSGPSSTMGPAARP 284 RP+ + SP+ + G + S + A+P Sbjct: 127 RPTSQPSPTFNRGGQASSHQKSSSGGAKP 155
>gi|7485637|pir||T00863 hypothetical protein F17K2.3 - Arabidopsis thaliana >gi|2979543|gb|AAC06152.1| (AC003680) hypothetical protein [Arabidopsis thaliana] Length = 481 Frame 2 hits (HSPs): ________________ __________________________________________________ Database sequence: | | | | | 481 0 150 300 450 Plus Strand HSPs: Score = 140 (49.3 bits), Expect = 9.5e-08, P = 9.5e-08 Identities = 47/166 (28%), Positives = 77/166 (46%), Frame = +2 Query: 5 LNQNSSKKKEKEMYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKN 184 +N+ +S + S+ KE+ Y ++ + N+ ++ Q + K + Y + Sbjct: 89 MNEATSTPSPSYISSSEKEKVRSYREKISNWQNQ--VSERLQALGVGMSENKRTVAYPSS 146 Query: 185 PKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDP 364 + ++ Y + + V G + P + DAA + +P K+ G D Sbjct: 147 ASVSSTASR----YRKTLSQKTPVARGGVATPRNPKDAAASPKPV---KESGNVYDD--- 196 Query: 365 EQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKKR 502 KL +N+ IV P+VKW+DVAGL AKQAL E VILP K+R Sbjct: 197 ---KLVEMINTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRR 239
>gi|6754410 ref|NP_035965.1| katanin p60 (ATPase-containing) subunit A1 [Mus musculus] >gi|5326894|gb|AAD42087.1|AF153197_1 (AF153197) lipotransin [Mus musculus] Length = 491 Frame 2 hits (HSPs): ________ _______ __________________________________________________ Database sequence: | | | | | 491 0 150 300 450 Plus Strand HSPs: Score = 113 (39.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06 Identities = 25/58 (43%), Positives = 35/58 (60%), Frame = +2 Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 T+P+ DG G D + L L I+ + PNV+W D+A L AK+ LQEAV+LP+ Sbjct: 175 TEPEANKFDGTGYDKD---LVEALERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPM 229 Score = 58 (20.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06 Identities = 15/67 (22%), Positives = 31/67 (46%), Frame = +2 Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRA 238 + +E VK A + GNY A Y L+ +L K+ +++ Q + E A Sbjct: 4 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEA 63 Query: 239 EEIRAVL 259 ++++ ++ Sbjct: 64 KQVKDIM 70
>gi|12653659|gb|AAH00612.1|AAH00612 (BC000612) Unknown (protein for MGC:2599) [Homo sapiens] Length = 490 Frame 2 hits (HSPs): _______ _________ __________________________________________________ Database sequence: | | | | | 490 0 150 300 450 Plus Strand HSPs: Score = 104 (36.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05 Identities = 29/81 (35%), Positives = 43/81 (53%), Frame = +2 Query: 278 PASSGDAAVATRPKT-KPKDGGKDG--DGEDPE------QAKLRAGLNSAIVREKPNVKW 430 P++S D R + K + +DG DGE P+ L L IV P++ W Sbjct: 148 PSTSRDKDYRARGRDDKGRKNMQDGASDGEMPKFDGAGYDKDLVEALERDIVSRNPSIHW 207 Query: 431 NDVAGLESAKQALQEAVILPV 493 +D+A LE AK+ L+EAV+LP+ Sbjct: 208 DDIADLEEAKKLLREAVVLPM 228 Score = 62 (21.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05 Identities = 12/51 (23%), Positives = 25/51 (49%), Frame = +2 Query: 107 GNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVL 259 GNY + Y ++ + H + ++P IK Q E L E++++++ Sbjct: 20 GNYDSSMVYYQGVMQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIV 70
>gi|3128218|gb|AAC26698.1| (AC004077) putative katanin [Arabidopsis thaliana] Length = 393 Frame 2 hits (HSPs): ___ _______ __________________________________________________ Database sequence: | | | | 393 0 150 300 Plus Strand HSPs: Score = 117 (41.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05 Identities = 21/47 (44%), Positives = 31/47 (65%), Frame = +2 Query: 356 EDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496 E E L L+ I+R PN+KW + GLE+AK+ L+EAV++P+K Sbjct: 87 ESAETRTLAESLSRDIIRGNPNIKWESIKGLENAKKLLKEAVVMPIK 133 Score = 37 (13.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05 Identities = 6/15 (40%), Positives = 10/15 (66%), Frame = +2 Query: 317 KTKPKDGGKDGDGED 361 K +P+DG +G+ D Sbjct: 37 KDQPEDGSSNGNNGD 51
>gi|5825592|gb|AAD53310.1|AF177942_1 (AF177942) katanin p60 [Xenopus laevis] Length = 486 Frame 2 hits (HSPs): ________ ______ __________________________________________________ Database sequence: | | | | | 486 0 150 300 450 Plus Strand HSPs: Score = 112 (39.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05 Identities = 22/50 (44%), Positives = 33/50 (66%), Frame = +2 Query: 344 DGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 DG G D + L L I+ + PN++W+D+A LE AK+ L+EAV+LP+ Sbjct: 180 DGSGYDKD---LIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPM 226 Score = 47 (16.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05 Identities = 14/63 (22%), Positives = 27/63 (42%), Frame = +2 Query: 71 EYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIR 250 E VK A + GNY A Y L+ +L K+ +++ Q + E + ++ Sbjct: 8 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTFLQQKWQQVWQEINMECKHVK 67 Query: 251 AVL 259 ++ Sbjct: 68 DIM 70
>gi|11428328 ref|XP_002183.1| Jun dimerization protein p21SNFT [Homo sapiens] Length = 106 Frame 1 hits (HSPs): _____________________________________________ __________________________________________________ Database sequence: | | | | | | | 106 0 20 40 60 80 100 Plus Strand HSPs: Score = 103 (36.3 bits), Expect = 9.1e-05, P = 9.1e-05 Identities = 39/93 (41%), Positives = 48/93 (51%), Frame = +1 Query: 232 PG--RGDPGRPRRWAQRPGLQRGRRGRHKAQDEAQG--RRQRWRRR----GSRAGQA-TG 384 PG RGD G R A R G RGR GR +A A+G RR RR+ G+RAG+ G Sbjct: 11 PGLARGDTGPTRGVAGRAGSLRGR-GRREAVGAARGCRRRDSARRQPHGQGARAGRGGPG 69 Query: 385 RAQLRY---R*GKAQREVERRRGA*ERQAGFAGS 477 + R+ G+ QR E RRGA E A A + Sbjct: 70 QRSARHVARAPGRRQRPAEERRGAREPAAAAAAA 103
>gi|7521287|pir||H72692 probable p60 katanin APE0960 - Aeropyrum pernix (strain K1) >gi|5104629|dbj|BAA79944.1| (AP000060) 384aa long hypothetical p60 katanin [Aeropyrum pernix] Length = 384 Frame 2 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | 384 0 150 300 Plus Strand HSPs: Score = 119 (41.9 bits), Expect = 0.00011, P = 0.00011 Identities = 30/74 (40%), Positives = 46/74 (62%), Frame = +2 Query: 278 PASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESA 457 PAS + V T+ KDGG G+ E PE +++EKP+V ++D+AGLE A Sbjct: 79 PASGDEVYV----DTQEKDGG--GEDEAPE----------FVLKEKPSVTFDDIAGLEEA 122 Query: 458 KQALQEAVILPVKK 499 K+A++EA++ PVK+ Sbjct: 123 KKAIREAIVFPVKR 136
>gi|5901990 ref|NP_008975.1| katanin p60 subunit A 1 [Homo sapiens] >gi|3283072|gb|AAC25114.1| (AF056022) p60 katanin [Homo sapiens] Length = 491 Frame 2 hits (HSPs): ________ _______ __________________________________________________ Database sequence: | | | | | 491 0 150 300 450 Plus Strand HSPs: Score = 107 (37.7 bits), Expect = 0.00016, Sum P(2) = 0.00016 Identities = 23/58 (39%), Positives = 35/58 (60%), Frame = +2 Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 T+P+ D G D + L L I+ + PNV+W+D+A L AK+ L+EAV+LP+ Sbjct: 175 TEPETNKFDSTGYDKD---LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPM 229 Score = 50 (17.6 bits), Expect = 0.00016, Sum P(2) = 0.00016 Identities = 15/63 (23%), Positives = 28/63 (44%), Frame = +2 Query: 71 EYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIR 250 E VK A + GNY A Y L+ +L K+ +++ Q + E A+ ++ Sbjct: 8 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEINVEAKHVK 67 Query: 251 AVL 259 ++ Sbjct: 68 DIM 70
>gi|1066104|gb|AAC13878.1| (U39735) high molecular weight basic nuclear protein [Pleuronectes americanus] Length = 326 Frame 3 hits (HSPs): __________________________________ __________________________________________________ Database sequence: | | | | 326 0 150 300 Plus Strand HSPs: Score = 116 (40.8 bits), Expect = 0.00025, P = 0.00025 Identities = 50/165 (30%), Positives = 77/165 (46%), Frame = +3 Query: 21 RRRRRRRCIAISKSKQ*ST*NKR*MKTIRETTRKRFNF-T*TRWSISKRTSSTRRTLRSR 197 R ++R+R + SKS S +KR +K + T + + +R KR T + +R++ Sbjct: 9 RSQKRQRSPSRSKSPMISQSSKRRVKRPKMTAKSAIRSRSPSRSKSPKRRVQTPK-MRAK 67 Query: 198 RPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTP---RSP---QGPRRSPRT-EAKMETA 356 P SPS S PRRS + A +P RSP + P+RS +T + + +A Sbjct: 68 SPMRSRSPSRSKSPRRSKSPKRRVQTPKMRATSPMRSRSPSRYKSPKRSVKTPKTRANSA 127 Query: 357 RIPSRP--SYGPGSTPLSLGKSPT*SGTTSRGLRAPSRLCRKRLSCP*RS 500 R P P S P + G+SP S R ++ P + R P RS Sbjct: 128 RRPKSPMRSPSPKMRAKTRGRSPKRSNPPKRSVKTP----KTRAKSPRRS 173 Score = 97 (34.1 bits), Expect = 0.089, P = 0.085 Identities = 39/114 (34%), Positives = 54/114 (47%), Frame = +3 Query: 159 KRTSSTRRTLRSRRPSLR-NSPSISAGPRR-SGPS-STMGPAARPPAGTPRSPQGPRRSP 329 +R+ S +R R + P +R SP S P R P S P R A + R P+ P RSP Sbjct: 82 RRSKSPKR--RVQTPKMRATSPMRSRSPSRYKSPKRSVKTPKTR--ANSARRPKSPMRSP 137 Query: 330 RTEAKMET-ARIPSR--PSYGPGSTPLSLGKSPT*SGTTSRGLRAPSRLCRKRLSCP*RS 500 + + +T R P R P TP + KSP S + R ++ P + R P RS Sbjct: 138 SPKMRAKTRGRSPKRSNPPKRSVKTPKTRAKSPRRSKSPKRRVQTP----KMRAKSPMRS 193 Score = 84 (29.6 bits), Expect = 3.4, P = 0.97 Identities = 47/147 (31%), Positives = 71/147 (48%), Frame = +3 Query: 33 RRRCIAISKSKQ*ST*NKR*MKT--IRETTRKRFNFT*TRWSISKRTSSTRRTLRS--RR 200 R R + SKS + S KR ++T +R T+ R +R+ KR+ T +T + RR Sbjct: 71 RSRSPSRSKSPRRSKSPKRRVQTPKMRATSPMRSRSP-SRYKSPKRSVKTPKTRANSARR 129 Query: 201 PS--LRN-SPSISA-----GPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEAKMETA 356 P +R+ SP + A P+RS P + A +PR + P+R +T KM A Sbjct: 130 PKSPMRSPSPKMRAKTRGRSPKRSNPPKRSVKTPKTRAKSPRRSKSPKRRVQTP-KMR-A 187 Query: 357 RIPSRPSYGPGSTPLSLGKSPT*SGTTSRGLR 452 + P R P S P S SP S + R ++ Sbjct: 188 KSPMRSRKRPRS-P-SRSTSPMRSQSPKRRVK 217 Score = 81 (28.5 bits), Expect = 7.7, P = 1.0 Identities = 34/104 (32%), Positives = 49/104 (47%), Frame = +3 Query: 168 SSTRRTLRSRRPSLRNSPSISAGPRR--SGPSSTMGPA--ARPPAGTPRSPQGPRRSPRT 335 S R R R PS SP IS +R P T A +R P+ + +SP+ ++P+ Sbjct: 6 SPMRSQKRQRSPSRSKSPMISQSSKRRVKRPKMTAKSAIRSRSPSRS-KSPKRRVQTPKM 64 Query: 336 EAKMET-ARIPSRPSYGP--GSTPLSLGKSPT*SGTTSRGLRAPSR 464 AK +R PSR S P +P ++P T+ R+PSR Sbjct: 65 RAKSPMRSRSPSR-SKSPRRSKSPKRRVQTPKMRATSPMRSRSPSR 109
>gi|6466293|gb|AAF12877.1|AF205377_1 (AF205377) p60 katanin [Chlamydomonas reinhardtii] Length = 558 Frame 2 hits (HSPs): _______ __________________________________________________ Database sequence: | | | | | 558 0 150 300 450 Plus Strand HSPs: Score = 116 (40.8 bits), Expect = 0.00059, P = 0.00059 Identities = 29/67 (43%), Positives = 40/67 (59%), Frame = +2 Query: 305 ATRPKTKPKDGGKDGDG-----EDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQAL 469 A P KP D G G+ P+Q +L A L IV + +VKW+D+AGLE AK+ L Sbjct: 219 AAGPGGKPGDKGSAGEKAKKQYSGPDQ-ELAAMLERDIVDQGTSVKWDDIAGLEEAKRVL 277 Query: 470 QEAVILPV 493 EA++LP+ Sbjct: 278 NEALVLPM 285
>gi|6678139 ref|NP_033302.1| simple repeat sequence-containing transcript [Mus musculus] >gi|730888|sp|Q06666|T2_MOUSE OCTAPEPTIDE-REPEAT PROTEIN T2 >gi|7513691|pir||S71512 hypothetical protein T2 - mouse >gi|296382|emb|CAA48048.1| (X67863) T2 [Mus musculus] Length = 185 Frame 1 hits (HSPs): __________________________________________________ __________________________________________________ Database sequence: | | | | | 185 0 50 100 150 Plus Strand HSPs: Score = 108 (38.0 bits), Expect = 0.00076, P = 0.00076 Identities = 53/166 (31%), Positives = 74/166 (44%), Frame = +1 Query: 4 AESKFIEEEGE--GDV*QFQRASNRVRETSG-R*RQ*GKLRESVSTLHERVGVFQNAPQV 174 AES+ + E G + QR R RE R R+ G+ E + + + Sbjct: 9 AESQRVRESERQRGREAERQRERQRGREAERQRGRERGREAEREAERQRGRERQRGRGEA 68 Query: 175 REEP*DQGGHHSEIHRVSPPGRGDPGRPRRWAQRPGLQRGRRGRHKAQDEAQGRRQRWRR 354 + + G E HR GR R A+R QRGR +A E Q RQR R+ Sbjct: 69 ERQRGRERGREVERHRRGREAERQRGRERE-AER---QRGREAEREA--ERQRERQRERQ 122 Query: 355 RGSRAGQATGRAQLRYR*GKAQREV-ERRRGA*ERQAGFAGSGYLAREEA 501 RG A + GR R R +A+++ ER+RG E +A G G R+EA Sbjct: 123 RGREAERQRGREAERQRGREAEKQRGERQRGR-EVEAEAEGRGRGMRQEA 171 Score = 85 (29.9 bits), Expect = 0.85, P = 0.57 Identities = 25/64 (39%), Positives = 36/64 (56%), Frame = +1 Query: 283 LQRGRRGRHKAQDEAQGRRQRWR----RRGSRAGQATGRAQLRYR*GKAQREVERRRGA* 450 +QRGR ++Q + RQR R +R + G+ R + R R +A+RE ER+RG Sbjct: 1 MQRGREREAESQRVRESERQRGREAERQRERQRGREAERQRGRERGREAEREAERQRGR- 59 Query: 451 ERQAG 465 ERQ G Sbjct: 60 ERQRG 64 Score = 78 (27.5 bits), Expect = 6.3, P = 1.0 Identities = 55/176 (31%), Positives = 72/176 (40%), Frame = +1 Query: 4 AESKFIEEEGE--GDV*QFQRASNRVRETSG-R*RQ*GKLRESVSTLHERVGVFQNAPQV 174 AES+ + E G + QR R RE R R+ G+ E + + + Sbjct: 9 AESQRVRESERQRGREAERQRERQRGREAERQRGRERGREAEREAERQRGRERQRGRGEA 68 Query: 175 REEP*DQGGHHSEIHRVSPPGRGDPGRPRRWAQRPGLQRGRRGRHKA--QDEAQGRRQRW 348 + + G E HR GR R A+R QRGR +A Q E Q RQR Sbjct: 69 ERQRGRERGREVERHRRGREAERQRGRERE-AER---QRGREAEREAERQRERQRERQRG 124 Query: 349 R----RRGSRAGQATGRAQLRYR*GKAQR--EVERR---RGA*ERQAGFA---GSGYLAR 492 R +RG A + GR + R G+ QR EVE RG RQ A G G R Sbjct: 125 REAERQRGREAERQRGREAEKQR-GERQRGREVEAEAEGRGRGMRQEAEATEQGQGQRQR 183 Query: 493 E 495 + Sbjct: 184 Q 184
>gi|6648606|gb|AAF21247.1|AF048706_1 (AF048706) CAD ATPase; AAA1 [Arabidopsis thaliana] >gi|12324979|gb|AAG52435.1|AC018848_6 (AC018848) CAD ATPase (AAA1); 35570-33019 [Arabidopsis thaliana] Length = 523 Frame 2 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | | 523 0 150 300 450 Plus Strand HSPs: Score = 115 (40.5 bits), Expect = 0.00080, P = 0.00080 Identities = 30/76 (39%), Positives = 43/76 (56%), Frame = +2 Query: 266 GPSGPASSGDAAVATRPKTKPKDG-GKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVA 442 G G AS + A + + DG K G E P++ L A L ++ P V+W+DVA Sbjct: 186 GKKGAASKSNKAESMNGDAE--DGKSKRGLYEGPDE-DLAAMLERDVLDSTPGVRWDDVA 242 Query: 443 GLESAKQALQEAVILPV 493 GL AK+ L+EAV+LP+ Sbjct: 243 GLSEAKRLLEEAVVLPL 259
>gi|6015472|dbj|BAA85179.1| (AB032919) dopamine receptor D4 [Hylobates muelleri] Length = 118 Frame 3 hits (HSPs): ___________________________________ __________________________________________________ Database sequence: | | | | 118 0 50 100 Plus Strand HSPs: Score = 95 (33.4 bits), Expect = 0.00080, P = 0.00080 Identities = 29/85 (34%), Positives = 37/85 (43%), Frame = +3 Query: 144 RWSISKRTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGP-AARPPAGTPRSPQGPR 320 RW +++R R RRPS PS+ PR P GP A P G P+ P GP Sbjct: 5 RWEVARRAKLHGRA--PRRPSGPGPPSLV--PRL--PQDPCGPDCASPAPGPPQGPSGPD 58 Query: 321 RSPRTEAKMETARIPSRPSYGPGSTP 398 R+P + R P+ PG P Sbjct: 59 RAPPAPGLPQGLRGPNCAPPVPGLPP 84
>gi|3098603|gb|AAC15706.1| (AF052191) katanin p60 subunit [Strongylocentrotus purpuratus] Length = 516 Frame 2 hits (HSPs): _______ __________________________________________________ Database sequence: | | | | | 516 0 150 300 450 Plus Strand HSPs: Score = 114 (40.1 bits), Expect = 0.0011, P = 0.0011 Identities = 27/63 (42%), Positives = 36/63 (57%), Frame = +2 Query: 317 KTKPKDGGKDGDGE--DPE--QAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVI 484 K K G++GD + DP L L IV+ PNV W D+AGL AK+ L+EAV+ Sbjct: 192 KDKKAPSGEEGDEKKFDPAGYDKDLVENLERDIVQRNPNVHWADIAGLTEAKRLLEEAVV 251 Query: 485 LPV 493 LP+ Sbjct: 252 LPL 254
>gi|7299160|gb|AAF54358.1| (AE003682) CG8866 gene product [Drosophila melanogaster] Length = 520 Frame 2 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | | 520 0 150 300 450 Plus Strand HSPs: Score = 114 (40.1 bits), Expect = 0.0011, P = 0.0011 Identities = 25/70 (35%), Positives = 42/70 (60%), Frame = +2 Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRA 238 ++AI+ V QA D K NY +A+ LY +AL+YF + E + + A+ + Y +RA Sbjct: 277 QKAIDLVTQACAYDEKHNYKEAYYLYCSALQYFVPLITEETDATKRLALRNRALSYTKRA 336 Query: 239 EEIR-AVLDD 265 EEI+ +++D Sbjct: 337 EEIKNCIIED 346
>gi|1170404|sp|P42145|HSP1_PSECU SPERM PROTAMINE P1 >gi|598345|gb|AAA74602.1| (L35334) protamine P1 [Pseudochirops cupreus] Length = 69 Frame 3 hits (HSPs): ______ Frame 1 hits (HSPs): _______________________________________________ Annotated Domains: ________________________________________________ __________________________________________________ Database sequence: | | | | | 69 0 20 40 60 __________________ Annotated Domains: BLOCKS BL00048: Protamine P1 proteins. 1..27 PFAM protamine_P1: Protamine P1 1..66 PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 6..65 PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13 __________________ Plus Strand HSPs: Score = 70 (24.6 bits), Expect = 0.0022, Sum P(2) = 0.0022 Identities = 19/51 (37%), Positives = 25/51 (49%), Frame = +1 Query: 286 QRGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERR 438 +R RR R++ + R +R RRRG R G GR R R + R RR Sbjct: 19 RRRRRSRYRGRRRRYRRSRRRRRRGRRRGNCLGRRGYRRR--RYSRRRRRR 67 Score = 69 (24.3 bits), Expect = 0.85, P = 0.57 Identities = 18/51 (35%), Positives = 25/51 (49%), Frame = +1 Query: 289 RGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERRR 441 R RR R + + +GRR+R+RR R + R R G +R RRR Sbjct: 14 RYRRRRRRRRSRYRGRRRRYRRSRRRRRRGRRRGNCLGRRGYRRRRYSRRR 64 Score = 61 (21.5 bits), Expect = 6.8, P = 1.0 Identities = 22/65 (33%), Positives = 33/65 (50%), Frame = +1 Query: 298 RGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERRRGA*ERQAGFAGS 477 R RH ++ ++ R +R RRR R + GR + RYR + +R RRRG + G+ Sbjct: 3 RYRH-SRSRSRSRYRRRRRR--RRSRYRGRRR-RYRRSRRRRRRGRRRGNCLGRRGYRRR 58 Query: 478 GYLAR 492 Y R Sbjct: 59 RYSRR 63 Score = 55 (19.4 bits), Expect = 0.12, Sum P(2) = 0.11 Identities = 18/39 (46%), Positives = 21/39 (53%), Frame = +1 Query: 250 GRPRRWAQRPGLQRGRRGRHKAQDEAQGRRQRWRRRGSR 366 GR RR+ R +R RRGR + GRR RRR SR Sbjct: 28 GRRRRY--RRSRRRRRRGRRRGN--CLGRRGYRRRRYSR 62 Score = 37 (13.0 bits), Expect = 0.0022, Sum P(2) = 0.0022 Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +3 Query: 18 HRRRRRRR 41 +RRRRRRR Sbjct: 15 YRRRRRRR 22
>gi|5689503|dbj|BAA83035.1| (AB029006) KIAA1083 protein [Homo sapiens] Length = 584 Frame 3 hits (HSPs): ____ ______ Frame 2 hits (HSPs): _____ ______ __________________________________________________ Database sequence: | | | | | 584 0 150 300 450 Plus Strand HSPs: Score = 81 (28.5 bits), Expect = 0.0024, Sum P(3) = 0.0024 Identities = 24/57 (42%), Positives = 32/57 (56%), Frame = +2 Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILP 490 T+ K K+ D A L + + IV VK++D+AG + AKQALQE VILP Sbjct: 276 TRKKKDLKNFRNVDSNLANL---IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILP 329 Score = 59 (20.8 bits), Expect = 0.0024, Sum P(3) = 0.0024 Identities = 16/43 (37%), Positives = 22/43 (51%), Frame = +2 Query: 32 EKEMYSNFKEQAIEYVKQA--VDEDNK-GNYAKAFQLYMNALE 151 E E F +QA EY+ A +DED K G +A + Y +E Sbjct: 112 EAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 154 Score = 51 (18.0 bits), Expect = 0.015, Sum P(3) = 0.015 Identities = 9/18 (50%), Positives = 14/18 (77%), Frame = +2 Query: 56 KEQAIEYVKQAVDEDNKG 109 KEQA+E+ K+ ++E KG Sbjct: 142 KEQAVEWYKKGIEELEKG 159 Score = 48 (16.9 bits), Expect = 0.0024, Sum P(3) = 0.0024 Identities = 16/60 (26%), Positives = 25/60 (41%), Frame = +3 Query: 162 RTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEA 341 R+ + +T + +PS S SG GPA GTP++ + + S T A Sbjct: 216 RSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTTA 275 Score = 47 (16.5 bits), Expect = 1.4, Sum P(2) = 0.75 Identities = 15/46 (32%), Positives = 20/46 (43%), Frame = +3 Query: 213 NSPSISAGPRRS--GPSSTMGPAARPPAGTPRSPQ-GPRRSPRTEAK 344 NSP G ++ G S+ + P PP P P GP P + K Sbjct: 2 NSPG-GRGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESPHK 47
>gi|11875211 ref|NP_055761.2| spastin [Homo sapiens] >gi|12230611|sp|Q9UBP0|SPAS_HUMAN SPASTIN >gi|6273491|emb|CAB60141.1| (AJ246001) spastin protein [Homo sapiens] >gi|6273493|emb|CAB60208.1| (AJ246003) spastin protein [Homo sapiens] Length = 616 Frame 3 hits (HSPs): ____ _____ Frame 2 hits (HSPs): ____ ______ __________________________________________________ Database sequence: | | | | | | 616 0 150 300 450 600 Plus Strand HSPs: Score = 81 (28.5 bits), Expect = 0.0029, Sum P(3) = 0.0029 Identities = 24/57 (42%), Positives = 32/57 (56%), Frame = +2 Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILP 490 T+ K K+ D A L + + IV VK++D+AG + AKQALQE VILP Sbjct: 308 TRKKKDLKNFRNVDSNLANL---IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILP 361 Score = 59 (20.8 bits), Expect = 0.0029, Sum P(3) = 0.0029 Identities = 16/43 (37%), Positives = 22/43 (51%), Frame = +2 Query: 32 EKEMYSNFKEQAIEYVKQA--VDEDNK-GNYAKAFQLYMNALE 151 E E F +QA EY+ A +DED K G +A + Y +E Sbjct: 112 EAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 154 Score = 51 (18.0 bits), Expect = 0.018, Sum P(3) = 0.017 Identities = 9/18 (50%), Positives = 14/18 (77%), Frame = +2 Query: 56 KEQAIEYVKQAVDEDNKG 109 KEQA+E+ K+ ++E KG Sbjct: 142 KEQAVEWYKKGIEELEKG 159 Score = 48 (16.9 bits), Expect = 0.0029, Sum P(3) = 0.0029 Identities = 16/60 (26%), Positives = 25/60 (41%), Frame = +3 Query: 162 RTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEA 341 R+ + +T + +PS S SG GPA GTP++ + + S T A Sbjct: 248 RSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTTA 307 Score = 47 (16.5 bits), Expect = 1.6, Sum P(2) = 0.80 Identities = 15/46 (32%), Positives = 20/46 (43%), Frame = +3 Query: 213 NSPSISAGPRRS--GPSSTMGPAARPPAGTPRSPQ-GPRRSPRTEAK 344 NSP G ++ G S+ + P PP P P GP P + K Sbjct: 2 NSPG-GRGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESPHK 47
>gi|1082601|pir||S55461 mucin - human (fragment) >gi|853956|emb|CAA58319.1| (X83412) mucin [Homo sapiens] Length = 171 Frame 3 hits (HSPs): ____________________________ __________________________________________________ Database sequence: | | | | | 171 0 50 100 150 Plus Strand HSPs: Score = 101 (35.6 bits), Expect = 0.0051, P = 0.0051 Identities = 37/96 (38%), Positives = 47/96 (48%), Frame = +3 Query: 165 TSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEAK 344 TSS RT + +R L+ P+ G RR S GP+ARP A T + +G R SP + + Sbjct: 49 TSSGHRTEKRKRLQLQCQPAGGTGQRRG---SGQGPSARPAAFTGQR-RGSRSSPSADQQ 104 Query: 345 M------ETARIPSRPSYGPGSTPLSLGKS-PT*SGTTSR 443 E AR RP+ G G S PT SGT R Sbjct: 105 RAQDREEEAARPQRRPAAGTGQRRGSAAAPVPTSSGTGQR 144
>gi|6630459|gb|AAF19547.1|AC007190_15 (AC007190) F23N19.12 [Arabidopsis thaliana] Length = 312 Frame 3 hits (HSPs): ______________ __________________________________________________ Database sequence: | | | | | | | | 312 0 50 100 150 200 250 300 Plus Strand HSPs: Score = 106 (37.3 bits), Expect = 0.0059, P = 0.0059 Identities = 32/86 (37%), Positives = 44/86 (51%), Frame = +3 Query: 165 TSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAG-TPRSPQGPRRSPRTEA 341 TSS+ + S PSL SP S+ P S P S++ P++ PP +P SP P S + Sbjct: 22 TSSSSLSPSSSSPSLSPSPP-SSSPS-SAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLS 79 Query: 342 KMETARIPSRPSYGPGSTPLSLGKSPT 422 + + PS PS P S P S SP+ Sbjct: 80 SLSPSLSPSPPSSSPSSAPPS-SLSPS 105
>gi|7594619|emb|CAB88114.1| (AL078581) dJ12G14.4 (katanin p60 (ATPase-containing) subunit A 1) [Homo sapiens] Length = 384 Frame 2 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | 384 0 150 300 Plus Strand HSPs: Score = 107 (37.7 bits), Expect = 0.0061, P = 0.0061 Identities = 23/58 (39%), Positives = 35/58 (60%), Frame = +2 Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 T+P+ D G D + L L I+ + PNV+W+D+A L AK+ L+EAV+LP+ Sbjct: 68 TEPETNKFDSTGYDKD---LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPM 122
>gi|11418569 ref|XP_004304.1| katanin p60 (ATPase-containing) subunit A 1 [Homo sapiens] Length = 385 Frame 2 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | 385 0 150 300 Plus Strand HSPs: Score = 107 (37.7 bits), Expect = 0.0061, P = 0.0061 Identities = 23/58 (39%), Positives = 35/58 (60%), Frame = +2 Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 T+P+ D G D + L L I+ + PNV+W+D+A L AK+ L+EAV+LP+ Sbjct: 70 TEPETNKFDSTGYDKD---LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPM 124
>gi|12732306 ref|XP_011451.1| katanin p60 subunit A 1 [Homo sapiens] Length = 386 Frame 2 hits (HSPs): ________ __________________________________________________ Database sequence: | | | | 386 0 150 300 Plus Strand HSPs: Score = 107 (37.7 bits), Expect = 0.0061, P = 0.0061 Identities = 23/58 (39%), Positives = 35/58 (60%), Frame = +2 Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 T+P+ D G D + L L I+ + PNV+W+D+A L AK+ L+EAV+LP+ Sbjct: 70 TEPETNKFDSTGYDKD---LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPM 124
>gi|7296674|gb|AAF51954.1| (AE003601) CG1193 gene product [alt 2] [Drosophila melanogaster] Length = 669 Frame 2 hits (HSPs): __ _____ __________________________________________________ Database sequence: | | | | | | 669 0 150 300 450 600 Plus Strand HSPs: Score = 105 (37.0 bits), Expect = 0.0095, Sum P(2) = 0.0094 Identities = 27/60 (45%), Positives = 31/60 (51%), Frame = +2 Query: 314 PKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 PK PK K E L L I++ P +KW DVAGL AK LQEAV+LPV Sbjct: 352 PKCSPKTKAKHFSPLGYE-VHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPV 410 Score = 39 (13.7 bits), Expect = 0.0095, Sum P(2) = 0.0094 Identities = 8/19 (42%), Positives = 11/19 (57%), Frame = +2 Query: 272 SGPASSGDAAVATRPKTKP 328 S P A+ATRP++ P Sbjct: 57 SNPVLGRSNALATRPQSPP 75
>gi|1170390|sp|P42131|HSP1_CAEFU SPERM PROTAMINE P1 >gi|598099|gb|AAA74598.1| (L35332) protamine P1 [Caenolestes fuliginosus] Length = 61 Frame 3 hits (HSPs): _______ Frame 1 hits (HSPs): _____________________________________ Annotated Domains: ________________________________________________ __________________________________________________ Database sequence: | | | | | 61 0 20 40 60 __________________ Annotated Domains: BLOCKS BL00048: Protamine P1 proteins. 1..27 PFAM protamine_P1: Protamine P1 1..59 PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..58 PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13 __________________ Plus Strand HSPs: Score = 62 (21.8 bits), Expect = 0.019, Sum P(2) = 0.019 Identities = 15/40 (37%), Positives = 22/40 (55%), Frame = +1 Query: 286 QRGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR 405 +R RR R++++ R +R RRRG R G + R R R Sbjct: 19 RRRRRSRYRSRRRRYRRSRRRRRRGRRRGYSRRRYSRRRR 58 Score = 60 (21.1 bits), Expect = 8.8, P = 1.0 Identities = 15/40 (37%), Positives = 23/40 (57%), Frame = +1 Query: 289 RGRRGRHKAQDEAQGRRQRWRR--RGSRAGQATGRAQLRY 402 R RR R + + + RR+R+RR R R G+ G ++ RY Sbjct: 14 RYRRRRRRRRSRYRSRRRRYRRSRRRRRRGRRRGYSRRRY 53 Score = 37 (13.0 bits), Expect = 0.019, Sum P(2) = 0.019 Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +3 Query: 18 HRRRRRRR 41 +RRRRRRR Sbjct: 15 YRRRRRRR 22
>gi|7296675|gb|AAF51955.1| (AE003601) CG1193 gene product [alt 1] [Drosophila melanogaster] Length = 554 Frame 2 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | | 554 0 150 300 450 Plus Strand HSPs: Score = 105 (37.0 bits), Expect = 0.019, P = 0.019 Identities = 27/60 (45%), Positives = 31/60 (51%), Frame = +2 Query: 314 PKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493 PK PK K E L L I++ P +KW DVAGL AK LQEAV+LPV Sbjct: 237 PKCSPKTKAKHFSPLGYE-VHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPV 295
>gi|4809337|gb|AAD30182.1|AC006530_4 (AC006530) unknown [Homo sapiens] Length = 549 Frame 2 hits (HSPs): _________ __________________________________________________ Database sequence: | | | | | 549 0 150 300 450 Plus Strand HSPs: Score = 104 (36.6 bits), Expect = 0.026, P = 0.026 Identities = 29/87 (33%), Positives = 47/87 (54%), Frame = +2 Query: 65 AIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEE 244 A ++ A++ D +Y AF Y N ++ + + N + +EA+ K T+YLRRAEE Sbjct: 53 AATQIRLALERDVSEDYEAAFNHYQNGVDVLLRGIHVDPNKERREAVKLKITKYLRRAEE 112 Query: 245 I-----RAVLDDGPSGPASSGDAAVATRP 316 I + L G S P S+G +++ RP Sbjct: 113 IFNCHLQRPLSSGAS-P-SAGFSSLRLRP 139
>gi|479301|pir||S33375 homeotic protein Abd-B - desert locust (fragment) Length = 131 Frame 3 hits (HSPs): ________________________________ Annotated Domains: _________________________ __________________________________________________ Database sequence: | | | | 131 0 50 100 __________________ Annotated Domains: DOMO DM00009: HOMEOBOX 9..72 Entrez domain: homeobox homology #label HOX 14..70 PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 46..69 __________________ Plus Strand HSPs: Score = 90 (31.7 bits), Expect = 0.029, P = 0.028 Identities = 27/83 (32%), Positives = 43/83 (51%), Frame = +3 Query: 144 RWSISKRTSSTRRTLR----SRR-PSLRNSP--SISAGPRRSGPSSTMGPAARPPAGTPR 302 RW +++ + T R ++ +RR + +NS + S+ S SS+ + RPPAG Sbjct: 43 RWELARNLNLTERQVKIWFQNRRMKNKKNSQRQAASSSSSNSSSSSSSNSSKRPPAGRRP 102 Query: 303 SPQGPRRSPRTEAKMETARIPSRPS 377 P R + RT + TA PS+PS Sbjct: 103 PPTATRATKRTTTRPPTA--PSQPS 125
>gi|11432409 ref|XP_005944.1| paired box gene 2 [Homo sapiens] >gi|11432413 ref|XP_005946.1| paired box gene 2 [Homo sapiens] >gi|12735810 ref|XP_011934.1| paired box protein 2 isoform b [Homo sapiens] >gi|12735814 ref|XP_011932.1| paired box protein 2, isoform d [Homo sapiens] Length = 131 Frame 3 hits (HSPs): _____________________________ __________________________________________________ Database sequence: | | | | 131 0 50 100 Plus Strand HSPs: Score = 90 (31.7 bits), Expect = 0.029, P = 0.028 Identities = 28/74 (37%), Positives = 37/74 (50%), Frame = +3 Query: 201 PSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRS-PQGPRRSPRTEA----KMETARIP 365 P+ R SP RR G S+ + PA+ PA P S P G R A ++AR Sbjct: 46 PACRPSPPAWTARRREGDSAQLVPASTKPAPKPASHPAGLGRDLLARAGCFCDTQSARTA 105 Query: 366 SRPSYGPGSTPLSLGK 413 +RPS PG P +LG+ Sbjct: 106 ARPS--PGHPPRTLGR 119
>gi|9759619|dbj|BAB11561.1| (AB011479) gene_id:MNA5.12~unknown protein [Arabidopsis thaliana] Length = 130 Frame 3 hits (HSPs): ________________________ __________________________________________________ Database sequence: | | | | 130 0 50 100 Plus Strand HSPs: Score = 89 (31.3 bits), Expect = 0.037, P = 0.037 Identities = 23/68 (33%), Positives = 33/68 (48%), Frame = +3 Query: 201 PSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEAKMETARIPSRPSY 380 P+ P++S P S PSS P++ P +P +P+GP SP E A PS S Sbjct: 48 PTTTPPPAVSPAPTSSPPSSAPSPSSDAPTASPPAPEGPGVSPG-----ELAPTPSDASA 102 Query: 381 GPGSTPLS 404 P + L+ Sbjct: 103 PPPNAALT 110
>gi|1582120|prf||2117429N protamine P1 [Pseudochirops cupreus] Length = 62 Frame 3 hits (HSPs): ______ Frame 1 hits (HSPs): ________________________________________________ __________________________________________________ Database sequence: | | | | | 62 0 20 40 60 Plus Strand HSPs: Score = 71 (25.0 bits), Expect = 0.50, P = 0.39 Identities = 21/57 (36%), Positives = 31/57 (54%), Frame = +1 Query: 238 RGDPGRPR-RWAQRPGLQRGR-RGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRY 402 R R R R+ +R +R R RGR + ++ RR+R RRRG R + + R + RY Sbjct: 5 RHSRSRSRSRYRRRRRRRRSRYRGRRRRYRRSRRRRRRGRRRGYRRRRYSRRRRRRY 61 Score = 64 (22.5 bits), Expect = 3.1, P = 0.96 Identities = 16/40 (40%), Positives = 23/40 (57%), Frame = +1 Query: 289 RGRRGRHKAQDEAQGRRQRWRR--RGSRAGQATGRAQLRY 402 R RR R + + +GRR+R+RR R R G+ G + RY Sbjct: 14 RYRRRRRRRRSRYRGRRRRYRRSRRRRRRGRRRGYRRRRY 53 Score = 62 (21.8 bits), Expect = 5.2, P = 0.99 Identities = 20/51 (39%), Positives = 27/51 (52%), Frame = +1 Query: 289 RGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERRR 441 R RR R + + +GRR+R+RR SR + GR R G +R RRR Sbjct: 14 RYRRRRRRRRSRYRGRRRRYRR--SRRRRRRGR-----RRGYRRRRYSRRR 57 Score = 60 (21.1 bits), Expect = 8.8, P = 1.0 Identities = 19/49 (38%), Positives = 28/49 (57%), Frame = +1 Query: 298 RGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERRRG 444 R RH ++ ++ R +R RRR R + GR + RYR + +R RRRG Sbjct: 3 RYRH-SRSRSRSRYRRRRRR--RRSRYRGRRR-RYRRSRRRRRRGRRRG 47 Score = 59 (20.8 bits), Expect = 0.041, Sum P(2) = 0.040 Identities = 15/40 (37%), Positives = 20/40 (50%), Frame = +1 Query: 286 QRGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR 405 +R RR R++ + R +R RRRG R G R R R Sbjct: 19 RRRRRSRYRGRRRRYRRSRRRRRRGRRRGYRRRRYSRRRR 58 Score = 37 (13.0 bits), Expect = 0.041, Sum P(2) = 0.040 Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +3 Query: 18 HRRRRRRR 41 +RRRRRRR Sbjct: 15 YRRRRRRR 22
>gi|12230605|sp|Q9QYY8|SPAS_MOUSE SPASTIN >gi|6273572|emb|CAB60143.1| (AJ246002) spastin protein orthologue [Mus musculus] Length = 504 Frame 2 hits (HSPs): ___ ________ __________________________________________________ Database sequence: | | | | | 504 0 150 300 450 Plus Strand HSPs: Score = 87 (30.6 bits), Expect = 0.045, Sum P(2) = 0.044 Identities = 30/80 (37%), Positives = 38/80 (47%), Frame = +2 Query: 251 AVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKW 430 A G P + + T K KD K+ D A L + + IV VK+ Sbjct: 174 ATTHKGTPKPNRTNKPSTPTTAVRKKKDL-KNFRNVDSNLANL---IMNEIVDNGTAVKF 229 Query: 431 NDVAGLESAKQALQEAVILP 490 +D+AG E AKQALQE VILP Sbjct: 230 DDIAGQELAKQALQEIVILP 249 Score = 53 (18.7 bits), Expect = 0.045, Sum P(2) = 0.044 Identities = 10/26 (38%), Positives = 18/26 (69%), Frame = +2 Query: 32 EKEMYSNFKEQAIEYVKQAVDEDNKG 109 ++E + KEQA+E+ K+ ++E KG Sbjct: 22 DEEEKAGQKEQAVEWYKKGIEELEKG 47
>gi|1076211|pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii >gi|530876|gb|AAB53953.1| (L29029) amino acid feature: Rod protein domain, aa 266 .. 468; amino acid feature: globular protein domain, aa 32 .. 265 [Chlamydomonas reinhardtii] Length = 473 Frame 3 hits (HSPs): _______________________ Annotated Domains: ________________________ __________________________________________________ Database sequence: | | | | | 473 0 150 300 450 __________________ Annotated Domains: DOMO DM00698: 218..328 DOMO DM00698: 330..431 __________________ Plus Strand HSPs: Score = 101 (35.6 bits), Expect = 0.051, P = 0.049 Identities = 42/116 (36%), Positives = 50/116 (43%), Frame = +3 Query: 114 TRKRFNFT*TRWSISKRTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARP-PA 290 T FN T S S + S + + S P SPS A P S PS P+ P P Sbjct: 256 TLANFNRTGASPSPSPKASPSPKVSPSPSPKASPSPSPKASPSPS-PSPKASPSPSPSPK 314 Query: 291 GTPRSPQGPRRSPRTEAKMETARIPSRPSYGPGSTPL-SLGKSPT*SGTTSRGLRAPS 461 +P SP P SP K + PS PS P S P S SP+ S S L +PS Sbjct: 315 ASP-SPS-PSPSPSPSPKASPSPSPS-PSVQPASKPSPSPSPSPSPSPRPSPPLPSPS 369 Score = 87 (30.6 bits), Expect = 2.5, P = 0.92 Identities = 32/90 (35%), Positives = 45/90 (50%), Frame = +3 Query: 198 RPSLRNSPSISAGPRRSGPSSTMGPAARP-PAGTPR-SPQ-GPRRSPRTEAKMETARIPS 368 +PS SPS S PR S P + P+ P P+ +P SP+ P SP + + PS Sbjct: 346 KPSPSPSPSPSPSPRPSPPLPSPSPSPSPSPSPSPSPSPKPSPSPSPSPSPSPKPSPSPS 405 Query: 369 RPSYGPGSTPLSLGKSPT*SGTTSRGLRA-PS 461 PS P +P + SP+ S + S +A PS Sbjct: 406 -PSPSPSPSP-KVSPSPSPSPSPSPSPKASPS 435 Score = 85 (29.9 bits), Expect = 4.3, P = 0.99 Identities = 29/89 (32%), Positives = 40/89 (44%), Frame = +3 Query: 156 SKRTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARP-PAGTPRSPQGPRRSPR 332 S S + + S PS SPS A P S PS ++ PA++P P+ +P PR SP Sbjct: 306 SPSPSPSPKASPSPSPSPSPSPSPKASPSPS-PSPSVQPASKPSPSPSPSPSPSPRPSPP 364 Query: 333 TEAKMETARIPSRPSYGPGSTPLSLGKSPT 422 + + PS P P S SP+ Sbjct: 365 LPSPSPSPSPSPSPSPSPSPKP-SPSPSPS 393 Score = 82 (28.9 bits), Expect = 9.7, P = 1.0 Identities = 27/77 (35%), Positives = 35/77 (45%), Frame = +3 Query: 192 SRRPSLRNSPSISAGPRRSGPSSTMGPAARP-PAGTPRSPQGPRRSPRTEAKMETARIPS 368 S +PS SPS S P+ S PS + P+ P P +P P SP +A A+ PS Sbjct: 383 SPKPSPSPSPSPSPSPKPS-PSPSPSPSPSPSPKVSPSPSPSPSPSPSPKASPSPAKKPS 441 Query: 369 RPS-YGPGSTPLSLGKSP 419 P G+ P G P Sbjct: 442 PPPPVEEGAPPPIEGPPP 459 Score = 82 (28.9 bits), Expect = 9.7, P = 1.0 Identities = 31/88 (35%), Positives = 40/88 (45%), Frame = +3 Query: 201 PSLRNSPSISAGPRRSGPSSTMGPAARP-PAGTPR-SPQ-GPRRSPRTEAKMETARIPS- 368 PS SPS S P S PS P+ P P+ +P+ SP P SP K+ + PS Sbjct: 366 PSPSPSPSPSPSPSPS-PSPKPSPSPSPSPSPSPKPSPSPSPSPSPSPSPKVSPSPSPSP 424 Query: 369 RPSYGPGSTPLSLGKSPT*SGTTSRGLRAP 458 PS P ++P S K P+ G P Sbjct: 425 SPSPSPKASP-SPAKKPSPPPPVEEGAPPP 453 WARNING: HSPs involving 370 database sequences were not reported due to the limiting value of parameter B = 50. Parameters: filter=none matrix=BLOSUM62 V=50 B=50 E=10 gi H=1 sort_by_pvalue echofilter ctxfactor=5.95 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H Std. 0 BLOSUM62 0.318 0.135 0.401 +3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.144 0.462 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +2 0 BLOSUM62 0.312 0.130 0.363 same same same Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +1 0 BLOSUM62 0.318 0.135 0.401 0.336 0.147 0.466 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -1 0 BLOSUM62 0.318 0.135 0.401 0.343 0.146 0.464 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -2 0 BLOSUM62 0.318 0.135 0.401 0.352 0.152 0.617 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.160 0.493 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +3 0 172 171 10. 75 3 12 22 0.11 34 31 0.11 37 +2 0 172 171 10. 75 3 12 23 0.091 35 31 0.11 37 +1 0 173 172 10. 75 3 12 22 0.11 34 31 0.11 37 -1 0 173 172 10. 75 3 12 22 0.11 34 31 0.11 37 -2 0 172 172 10. 75 3 12 22 0.11 34 31 0.11 37 -3 0 172 171 10. 75 3 12 22 0.11 34 31 0.11 37 Statistics: Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr Title: nr Release date: unknown Posted date: 4:06 PM CST Feb 28, 2001 Format: BLAST # of letters in database: 197,782,623 # of sequences in database: 625,274 # of database sequences satisfying E: 420 No. of states in DFA: 592 (58 KB) Total size of DFA: 174 KB (192 KB) Time to generate neighborhood: 0.00u 0.02s 0.02t Elapsed: 00:00:00 No. of threads or processors used: 6 Search cpu time: 216.43u 0.97s 217.40t Elapsed: 00:00:43 Total cpu time: 216.46u 1.04s 217.50t Elapsed: 00:00:44 Start: Mon Feb 4 18:37:24 2002 End: Mon Feb 4 18:38:08 2002 WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000