R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 370 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|3860272|gb|AAC73040.1| (AC005824) putative AAA-type ATPase [Arabidopsis
thaliana]
Length = 435
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 435
0 150 300
Plus Strand HSPs:
Score = 693 (243.9 bits), Expect = 2.7e-67, P = 2.7e-67
Identities = 137/153 (89%), Positives = 143/153 (93%), Frame = +2
Query: 41 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFT 220
MYSNFKEQAIEYVKQAV EDN GNY KAF LYMNALEYFKTHLKYEKNPKI+EAITQKFT
Sbjct: 1 MYSNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT 60
Query: 221 EYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDG-DGEDPEQAKLRAGLNS 397
EYLRRAEEIRAVLD+G SGP S+GDAAVATRPKTKPKDG G DGEDPEQ+KLRAGLNS
Sbjct: 61 EYLRRAEEIRAVLDEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLNS 120
Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
AIVREKPN+KW+DVAGLESAKQALQEAVILPVK
Sbjct: 121 AIVREKPNIKWSDVAGLESAKQALQEAVILPVK 153
>gi|6579206|gb|AAF18249.1|AC011438_11 (AC011438) T23G18.12 [Arabidopsis
thaliana]
Length = 126
Frame 2 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | 126
0 50 100
Plus Strand HSPs:
Score = 440 (154.9 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 92/119 (77%), Positives = 103/119 (86%), Frame = +2
Query: 137 MNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRP 316
MNALEYFK +LKYEKNP+I++AIT KF EYLRRAEEIRAVL + SG S+GDAAVAT+P
Sbjct: 1 MNALEYFKIYLKYEKNPRIRDAITDKFYEYLRRAEEIRAVLVEVGSGKGSNGDAAVATKP 60
Query: 317 KTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
KTKPKDGG DG E++KLRAGLNSAI+REKPNVKW VAGLESAKQAL+EAVILPV
Sbjct: 61 KTKPKDGG-DG-----EESKLRAGLNSAIIREKPNVKWTVVAGLESAKQALKEAVILPV 113
>gi|10798816|dbj|BAB16447.1| (AP002483) putative AAA-type ATPase [Oryza sativa]
Length = 411
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 411
0 150 300
Plus Strand HSPs:
Score = 353 (124.3 bits), Expect = 2.9e-31, P = 2.9e-31
Identities = 71/93 (76%), Positives = 76/93 (81%), Frame = +2
Query: 41 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFT 220
MYSNFKEQAIEYVKQAV EDN GNY KAF LYMNALEYFKTHLKYEK+PKIK+AI KFT
Sbjct: 1 MYSNFKEQAIEYVKQAVQEDNGGNYVKAFPLYMNALEYFKTHLKYEKDPKIKDAIAAKFT 60
Query: 221 EYLRRAEEIRAVLDDGPSGPASSGDAAVATRPK 319
EYLRRAEEIRAVLD G GD+ A +P+
Sbjct: 61 EYLRRAEEIRAVLDGHIGGGGGGGDSEQA-KPR 92
Score = 177 (62.3 bits), Expect = 6.7e-12, P = 6.7e-12
Identities = 39/57 (68%), Positives = 43/57 (75%), Frame = +2
Query: 332 DG--GKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
DG G G G D EQAK R L SAIV KP+VKW+DVAGLESAK+ALQEA ILP+K
Sbjct: 74 DGHIGGGGGGGDSEQAKPRGMLRSAIVAAKPSVKWSDVAGLESAKEALQEAAILPIK 130
>gi|5052502|gb|AAD38581.1|AF145606_1 (AF145606) BcDNA.GH02678 [Drosophila
melanogaster] >gi|7293406|gb|AAF48783.1| (AE003507) BcDNA:GH02678
gene product [Drosophila melanogaster]
Length = 442
Frame 2 hits (HSPs): __________________
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | 442
0 150 300
Plus Strand HSPs:
Score = 324 (114.1 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 68/146 (46%), Positives = 97/146 (66%), Frame = +2
Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235
++AI+ V +A +ED NYA+A +LY + +EYF +KYE + K K++I K +YL R
Sbjct: 8 QKAIDLVTKATEEDRNKNYAEALRLYEHGVEYFLHTIKYEAQGEKAKDSIRAKCLQYLDR 67
Query: 236 AEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREK 415
AE+++ L G P G + A K K D D DG+DPE+ KL++ L AIV EK
Sbjct: 68 AEKLKEYLKKGKKKPIKEGGESSAKDDKDKKSDSD-DEDGDDPEKKKLQSKLEDAIVIEK 126
Query: 416 PNVKWNDVAGLESAKQALQEAVILPVK 496
P V+W+DVAGL++AK+AL+EAVILP+K
Sbjct: 127 PKVQWSDVAGLDAAKEALKEAVILPIK 153
Score = 39 (13.7 bits), Expect = 1.1e-30, Sum P(2) = 1.1e-30
Identities = 8/11 (72%), Positives = 10/11 (90%), Frame = +1
Query: 487 AREEAVILPVK 519
A +EAVILP+K
Sbjct: 143 ALKEAVILPIK 153
>gi|6325431 ref|NP_015499.1| AAA-type ATPase; Vps4p [Saccharomyces cerevisiae]
>gi|1706647|sp|P52917|VPS4_YEAST VACUOLAR PROTEIN
SORTING-ASSOCIATED PROTEIN VPS4 (END13 PROTEIN)
>gi|2131247|pir||S59831 END13 protein - yeast (Saccharomyces
cerevisiae) >gi|786322|gb|AAB68107.1| (U25842) Similar to several
members of the Cdc48/Pas1/Sec18 family of proteins (Swiss Prot.
accession numbers P25694, P24004, P18759) [Saccharomyces
cerevisiae]
Length = 437
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 437
0 150 300
Plus Strand HSPs:
Score = 335 (117.9 bits), Expect = 2.4e-29, P = 2.4e-29
Identities = 74/150 (49%), Positives = 98/150 (65%), Frame = +2
Query: 50 NFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYL 229
+F + IE V++A+D D Y +A+ Y N L+Y LKYEKNPK K+ I KFTEYL
Sbjct: 5 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYL 64
Query: 230 RRAEEIRAVLDDGPSGPA----SSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNS 397
RAE+++ L+ + A S+G + K ++G +D GED + KLR L+S
Sbjct: 65 NRAEQLKKHLESEEANAAKKSPSAGSGSNGGNKKISQEEG-EDNGGEDNK--KLRGALSS 121
Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
AI+ EKPNVKW DVAGLE AK+AL+EAVILPVK
Sbjct: 122 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVK 154
>gi|1054845|emb|CAA63364.1| (X92680) allelic to VPS4 [Saccharomyces cerevisiae]
Length = 437
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 437
0 150 300
Plus Strand HSPs:
Score = 334 (117.6 bits), Expect = 3.0e-29, P = 3.0e-29
Identities = 74/150 (49%), Positives = 98/150 (65%), Frame = +2
Query: 50 NFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYL 229
+F + IE V++A+D D Y +A+ Y N L+Y LKYEKNPK K+ I KFTEYL
Sbjct: 5 DFLTKGIELVQKAIDLDTATQYEEAYTSYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYL 64
Query: 230 RRAEEIRAVLDDGPSGPA----SSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNS 397
RAE+++ L+ + A S+G + K ++G +D GED + KLR L+S
Sbjct: 65 NRAEQLKKHLESEEANAAKKSPSAGSGSNGGNKKISQEEG-EDNGGEDNK--KLRGALSS 121
Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
AI+ EKPNVKW DVAGLE AK+AL+EAVILPVK
Sbjct: 122 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVK 154
>gi|11425184 ref|XP_008741.1| suppressor of K+ transport defect 1 [Homo
sapiens] >gi|9885650|gb|AAG01471.1|AF282904_1 (AF282904) vacuolar
protein sorting factor 4B [Homo sapiens]
>gi|11225485|gb|AAG33022.1|AF195514_1 (AF195514) VPS4-2 ATPase
[Homo sapiens]
Length = 444
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 444
0 150 300
Plus Strand HSPs:
Score = 312 (109.8 bits), Expect = 6.5e-27, P = 6.5e-27
Identities = 69/147 (46%), Positives = 96/147 (65%), Frame = +2
Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235
++AI+ +A ED GNY +A QLY +A++YF +KYE + K K++I K TEYL R
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 236 AEEIRAVL---DDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIV 406
AE+++ L + P G + A K DG +G+ +DPE+ KL+ L AIV
Sbjct: 69 AEKLKEYLKNKEKKAQKPVKEGQPSPADE-KGNDSDG--EGESDDPEKKKLQNQLQGAIV 125
Query: 407 REKPNVKWNDVAGLESAKQALQEAVILPVK 496
E+PNVKW+DVAGLE AK+AL+EAVILP+K
Sbjct: 126 IERPNVKWSDVAGLEGAKEALKEAVILPIK 155
>gi|6677981 ref|NP_033216.1| suppressor of K+ transport defect 1 [Mus musculus]
>gi|1173444|sp|P46467|SKD1_MOUSE SKD1 PROTEIN
>gi|1083520|pir||S48696 suppressor protein SKD1 - mouse
>gi|557876|gb|AAA50497.1| (U10119) SKD1 [Mus musculus]
Length = 444
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 444
0 150 300
Plus Strand HSPs:
Score = 309 (108.8 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 66/147 (44%), Positives = 92/147 (62%), Frame = +2
Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235
++AI+ +A ED GNY +A QLY +A++YF +KYE + K K++I K TEYL R
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 236 AEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREK 415
AE+++ L P A + K D + + +DPE+ KL+ L AIV E+
Sbjct: 69 AEKLKEYLKKKEKKPQKPVKEAQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIER 128
Query: 416 PNVKWNDVAGLESAKQALQEAVILPVK 496
PNVKW+DVAGLE AK+AL+EAVILP+K
Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIK 155
>gi|4759108 ref|NP_004860.1| suppressor of K+ transport defect 1; mouse SKD1
homolog [Homo sapiens] >gi|9087199|sp|O75351|SKD1_HUMAN SKD1
PROTEIN >gi|3329390|gb|AAC39874.1| (AF038960) SKD1 homolog [Homo
sapiens]
Length = 444
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 444
0 150 300
Plus Strand HSPs:
Score = 309 (108.8 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 68/147 (46%), Positives = 96/147 (65%), Frame = +2
Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235
++AI+ +A ED GNY +A QLY +A++YF +KYE + K K++I K TEYL R
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 236 AEEIRAVL---DDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIV 406
AE+++ L + P G + A K DG +G+ +DPE+ KL+ L AIV
Sbjct: 69 AEKLKEYLKNKEKKAQKPVKEGQPSPADE-KGNDSDG--EGESDDPEKRKLQNQLQGAIV 125
Query: 407 REKPNVKWNDVAGLESAKQALQEAVILPVK 496
++PNVKW+DVAGLE AK+AL+EAVILP+K
Sbjct: 126 IDRPNVKWSDVAGLEGAKEALKEAVILPIK 155
>gi|5712623|gb|AAD47570.1|AF134119_1 (AF134119) SKD1 [Mus musculus]
Length = 444
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 444
0 150 300
Plus Strand HSPs:
Score = 304 (107.0 bits), Expect = 4.5e-26, P = 4.5e-26
Identities = 65/147 (44%), Positives = 91/147 (61%), Frame = +2
Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 235
++AI+ +A ED GNY +A QLY +A++YF +KYE + K K++I K TEYL R
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 236 AEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREK 415
AE+++ L P + K D + + +DPE+ KL+ L AIV E+
Sbjct: 69 AEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIER 128
Query: 416 PNVKWNDVAGLESAKQALQEAVILPVK 496
PNVKW+DVAGLE AK+AL+EAVILP+K
Sbjct: 129 PNVKWSDVAGLEGAKEALKEAVILPIK 155
>gi|11430565 ref|XP_007834.1| similar to vacuolar sorting protein 4 (H.
sapiens) [Homo sapiens] >gi|12739351 ref|XP_012484.1| vacuolar
sorting protein 4 [Homo sapiens] >gi|12739355 ref|XP_012486.1|
similar to vacuolar sorting protein 4 (H. sapiens) [Homo sapiens]
Length = 479
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 479
0 150 300 450
Plus Strand HSPs:
Score = 302 (106.3 bits), Expect = 1.5e-25, P = 1.5e-25
Identities = 66/153 (43%), Positives = 98/153 (64%), Frame = +2
Query: 38 EMYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNP-KIKEAITQK 214
EM ++ ++AI+ V +A +ED NY +A +LY +A+EYF +KYE + K KE+I K
Sbjct: 42 EMTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAK 101
Query: 215 FTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLN 394
+YL RAE+++ L G V +++ K D +G++PE+ KL+ L
Sbjct: 102 CVQYLDRAEKLKDYL----RSKEKHGKKPVKEN-QSEGKGSDSDSEGDNPEKKKLQEQLM 156
Query: 395 SAIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
A+V EKPN++WNDVAGLE AK+AL+EAVILP+K
Sbjct: 157 GAVVMEKPNIRWNDVAGLEGAKEALKEAVILPIK 190
>gi|7019569 ref|NP_037377.1| vacuolar sorting protein 4 [Homo sapiens]
>gi|5732691|gb|AAD49227.1|AF159063_1 (AF159063) SKD1-homolog [Homo
sapiens] >gi|9885648|gb|AAG01470.1|AF282903_1 (AF282903) vacuolar
protein sorting factor 4A [Homo sapiens]
Length = 437
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 437
0 150 300
Plus Strand HSPs:
Score = 297 (104.5 bits), Expect = 2.6e-25, P = 2.6e-25
Identities = 65/152 (42%), Positives = 97/152 (63%), Frame = +2
Query: 41 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNP-KIKEAITQKF 217
M ++ ++AI+ V +A +ED NY +A +LY +A+EYF +KYE + K KE+I K
Sbjct: 1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC 60
Query: 218 TEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNS 397
+YL RAE+++ L G V +++ K D +G++PE+ KL+ L
Sbjct: 61 VQYLDRAEKLKDYL----RSKEKHGKKPVKEN-QSEGKGSDSDSEGDNPEKKKLQEQLMG 115
Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
A+V EKPN++WNDVAGLE AK+AL+EAVILP+K
Sbjct: 116 AVVMEKPNIRWNDVAGLEGAKEALKEAVILPIK 148
>gi|6563218|gb|AAF17203.1|AF112215_1 (AF112215) SKD1 protein [Homo sapiens]
Length = 437
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 437
0 150 300
Plus Strand HSPs:
Score = 297 (104.5 bits), Expect = 2.6e-25, P = 2.6e-25
Identities = 65/152 (42%), Positives = 97/152 (63%), Frame = +2
Query: 41 MYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNP-KIKEAITQKF 217
M ++ ++AI+ V +A +ED NY +A +LY +A+EYF +KYE + K KE+I K
Sbjct: 1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC 60
Query: 218 TEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNS 397
+YL RAE+++ L G V +++ K D +G++PE+ KL+ L
Sbjct: 61 VQYLDRAEKLKDYL----RSKEEHGKKPVKEN-QSEGKGSDSDSEGDNPEKKKLQEQLMG 115
Query: 398 AIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
A+V EKPN++WNDVAGLE AK+AL+EAVILP+K
Sbjct: 116 AVVMEKPNIRWNDVAGLEGAKEALKEAVILPIK 148
>gi|5381417|gb|AAD42971.1|AF155740_1 (AF155740) vacuolar sorting protein 4
[Homo sapiens]
Length = 432
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 432
0 150 300
Plus Strand HSPs:
Score = 296 (104.2 bits), Expect = 3.2e-25, P = 3.2e-25
Identities = 64/146 (43%), Positives = 94/146 (64%), Frame = +2
Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNP-KIKEAITQKFTEYLRR 235
++AI+ V +A +ED NY +A +LY +A+EYF +KYE + K KE+I K +YL R
Sbjct: 2 QKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKCVQYLDR 61
Query: 236 AEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREK 415
AE+++ L G V +++ K D +G++PE+ KL+ L A+V EK
Sbjct: 62 AEKLKDYL----RSKEKHGKKPVKEN-QSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEK 116
Query: 416 PNVKWNDVAGLESAKQALQEAVILPVK 496
PN++WNDVAGLE AK+AL+EAVILP+K
Sbjct: 117 PNIRWNDVAGLEGAKEALKEAVILPIK 143
>gi|1173445|sp|Q09803|SKD1_SCHPO SUPRESSOR PROTEIN OF BEM1/BED5 DOUBLE MUTANTS
>gi|2130392|pir||S62461 probable AAA-family ATPase, supressor
protein - fission yeast (Schizosaccharomyces pombe)
>gi|7492345|pir||T38572 probable AAA-family ATPase - fission yeast
(Schizosaccharomyces pombe) >gi|496311|gb|AAA35347.1| (L33456)
supressor protein [Schizosaccharomyces pombe]
>gi|1019404|emb|CAA91171.1| (Z54354) putative AAA-family ATPase
[Schizosaccharomyces pombe]
Length = 432
Frame 2 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 432
0 150 300
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 128..148
BLOCKS BL00674B: AAA-protein family proteins. 162..183
BLOCKS BL00674C: AAA-protein family proteins. 195..237
BLOCKS BL00674D: AAA-protein family proteins. 252..298
BLOCKS BL00674E: AAA-protein family proteins. 329..348
DOMO DM03409: 1..121
DOMO DM00024: AAA-PROTEINFAMILY 123..281
DOMO DM00076: AAA-PROTEINFAMILY 283..360
DOMO DM03446: 362..431
Entrez np-binding site: ATP (POTENTIAL). 169..176
PFAM AAA: ATPases associated with various cel 164..348
PRODOM PD019381: SKD1(2) EN13(1) Q9ZNT0(1) 2..66
PRODOM PD094515: SKD1_SCHPO 68..118
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 120..314
PRODOM PD022006: SKD1(2) EN13(1) O75351(1) 316..431
PROSITE AAA: AAA-protein family signature. 266..284
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 169..176
__________________
Plus Strand HSPs:
Score = 294 (103.5 bits), Expect = 5.2e-25, P = 5.2e-25
Identities = 63/145 (43%), Positives = 89/145 (61%), Frame = +2
Query: 62 QAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAE 241
+AI VK A+D DN Y A++ Y +AL+YF LKYEKN K KE I K EYL RAE
Sbjct: 9 KAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYEKNEKSKEIIRSKVIEYLDRAE 68
Query: 242 EIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPN 421
+++ L + + SS + + + + D + KLR+ L SAI+ EKPN
Sbjct: 69 KLKVYLQE-KNNQISSKSRV--SNGNVEGSNSPTANEALDSDAKKLRSALTSAILVEKPN 125
Query: 422 VKWNDVAGLESAKQALQEAVILPVK 496
V+W+D+AGLE+AK+AL+E V+LP+K
Sbjct: 126 VRWDDIAGLENAKEALKETVLLPIK 150
>gi|6649217|gb|AAF21428.1|AF165422_1 (AF165422) suppressor of K+ transport
growth defect-like protein [Mesembryanthemum crystallinum]
Length = 317
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 34/35 (97%), Positives = 35/35 (100%), Frame = +2
Query: 392 NSAIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
NSAI+REKPNVKWNDVAGLESAKQALQEAVILPVK
Sbjct: 1 NSAIIREKPNVKWNDVAGLESAKQALQEAVILPVK 35
>gi|5734640|dbj|BAA83371.1| (AP000391) Similar to Arabidopsis thaliana
chromosome II BAC F17K2 genomic sequence; hypothetical protein
(AC003680) [Oryza sativa]
Length = 427
Frame 3 hits (HSPs): __________
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 427
0 150 300
Plus Strand HSPs:
Score = 125 (44.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 26/43 (60%), Positives = 30/43 (69%), Frame = +2
Query: 374 KLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKKR 502
KL +N+ IV P VKW DVAGL+ AKQAL E VILP K+R
Sbjct: 166 KLVEMINTTIVDRSPAVKWEDVAGLDKAKQALMEMVILPTKRR 208
Score = 40 (14.1 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 18/56 (32%), Positives = 19/56 (33%), Frame = +3
Query: 162 RTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSP 329
R STRR +S R RN SA G T P R S P P
Sbjct: 81 RLGSTRRRSQSGRLRWRNDSGCSA----RGVVVTNNPVNRNDRAASTSFHRPTSQP 132
Score = 39 (13.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 8/29 (27%), Positives = 15/29 (51%), Frame = +3
Query: 198 RPSLRNSPSISAGPRRSGPSSTMGPAARP 284
RP+ + SP+ + G + S + A+P
Sbjct: 127 RPTSQPSPTFNRGGQASSHQKSSSGGAKP 155
>gi|7485637|pir||T00863 hypothetical protein F17K2.3 - Arabidopsis thaliana
>gi|2979543|gb|AAC06152.1| (AC003680) hypothetical protein
[Arabidopsis thaliana]
Length = 481
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 481
0 150 300 450
Plus Strand HSPs:
Score = 140 (49.3 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 47/166 (28%), Positives = 77/166 (46%), Frame = +2
Query: 5 LNQNSSKKKEKEMYSNFKEQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKN 184
+N+ +S + S+ KE+ Y ++ + N+ ++ Q + K + Y +
Sbjct: 89 MNEATSTPSPSYISSSEKEKVRSYREKISNWQNQ--VSERLQALGVGMSENKRTVAYPSS 146
Query: 185 PKIKEAITQKFTEYLRRAEEIRAVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDP 364
+ ++ Y + + V G + P + DAA + +P K+ G D
Sbjct: 147 ASVSSTASR----YRKTLSQKTPVARGGVATPRNPKDAAASPKPV---KESGNVYDD--- 196
Query: 365 EQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVKKR 502
KL +N+ IV P+VKW+DVAGL AKQAL E VILP K+R
Sbjct: 197 ---KLVEMINTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRR 239
>gi|6754410 ref|NP_035965.1| katanin p60 (ATPase-containing) subunit A1 [Mus
musculus] >gi|5326894|gb|AAD42087.1|AF153197_1 (AF153197)
lipotransin [Mus musculus]
Length = 491
Frame 2 hits (HSPs): ________ _______
__________________________________________________
Database sequence: | | | | | 491
0 150 300 450
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 25/58 (43%), Positives = 35/58 (60%), Frame = +2
Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
T+P+ DG G D + L L I+ + PNV+W D+A L AK+ LQEAV+LP+
Sbjct: 175 TEPEANKFDGTGYDKD---LVEALERDIISQNPNVRWYDIADLVEAKKLLQEAVVLPM 229
Score = 58 (20.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 15/67 (22%), Positives = 31/67 (46%), Frame = +2
Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRA 238
+ +E VK A + GNY A Y L+ +L K+ +++ Q + E A
Sbjct: 4 QMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEA 63
Query: 239 EEIRAVL 259
++++ ++
Sbjct: 64 KQVKDIM 70
>gi|12653659|gb|AAH00612.1|AAH00612 (BC000612) Unknown (protein for MGC:2599)
[Homo sapiens]
Length = 490
Frame 2 hits (HSPs): _______ _________
__________________________________________________
Database sequence: | | | | | 490
0 150 300 450
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 29/81 (35%), Positives = 43/81 (53%), Frame = +2
Query: 278 PASSGDAAVATRPKT-KPKDGGKDG--DGEDPE------QAKLRAGLNSAIVREKPNVKW 430
P++S D R + K + +DG DGE P+ L L IV P++ W
Sbjct: 148 PSTSRDKDYRARGRDDKGRKNMQDGASDGEMPKFDGAGYDKDLVEALERDIVSRNPSIHW 207
Query: 431 NDVAGLESAKQALQEAVILPV 493
+D+A LE AK+ L+EAV+LP+
Sbjct: 208 DDIADLEEAKKLLREAVVLPM 228
Score = 62 (21.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 12/51 (23%), Positives = 25/51 (49%), Frame = +2
Query: 107 GNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVL 259
GNY + Y ++ + H + ++P IK Q E L E++++++
Sbjct: 20 GNYDSSMVYYQGVMQQIQRHCQSVRDPAIKGKWQQVRQELLEEYEQVKSIV 70
>gi|3128218|gb|AAC26698.1| (AC004077) putative katanin [Arabidopsis thaliana]
Length = 393
Frame 2 hits (HSPs): ___ _______
__________________________________________________
Database sequence: | | | | 393
0 150 300
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 21/47 (44%), Positives = 31/47 (65%), Frame = +2
Query: 356 EDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPVK 496
E E L L+ I+R PN+KW + GLE+AK+ L+EAV++P+K
Sbjct: 87 ESAETRTLAESLSRDIIRGNPNIKWESIKGLENAKKLLKEAVVMPIK 133
Score = 37 (13.0 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 6/15 (40%), Positives = 10/15 (66%), Frame = +2
Query: 317 KTKPKDGGKDGDGED 361
K +P+DG +G+ D
Sbjct: 37 KDQPEDGSSNGNNGD 51
>gi|5825592|gb|AAD53310.1|AF177942_1 (AF177942) katanin p60 [Xenopus laevis]
Length = 486
Frame 2 hits (HSPs): ________ ______
__________________________________________________
Database sequence: | | | | | 486
0 150 300 450
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 22/50 (44%), Positives = 33/50 (66%), Frame = +2
Query: 344 DGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
DG G D + L L I+ + PN++W+D+A LE AK+ L+EAV+LP+
Sbjct: 180 DGSGYDKD---LIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPM 226
Score = 47 (16.5 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 14/63 (22%), Positives = 27/63 (42%), Frame = +2
Query: 71 EYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIR 250
E VK A + GNY A Y L+ +L K+ +++ Q + E + ++
Sbjct: 8 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTFLQQKWQQVWQEINMECKHVK 67
Query: 251 AVL 259
++
Sbjct: 68 DIM 70
>gi|11428328 ref|XP_002183.1| Jun dimerization protein p21SNFT [Homo sapiens]
Length = 106
Frame 1 hits (HSPs): _____________________________________________
__________________________________________________
Database sequence: | | | | | | | 106
0 20 40 60 80 100
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 9.1e-05, P = 9.1e-05
Identities = 39/93 (41%), Positives = 48/93 (51%), Frame = +1
Query: 232 PG--RGDPGRPRRWAQRPGLQRGRRGRHKAQDEAQG--RRQRWRRR----GSRAGQA-TG 384
PG RGD G R A R G RGR GR +A A+G RR RR+ G+RAG+ G
Sbjct: 11 PGLARGDTGPTRGVAGRAGSLRGR-GRREAVGAARGCRRRDSARRQPHGQGARAGRGGPG 69
Query: 385 RAQLRY---R*GKAQREVERRRGA*ERQAGFAGS 477
+ R+ G+ QR E RRGA E A A +
Sbjct: 70 QRSARHVARAPGRRQRPAEERRGAREPAAAAAAA 103
>gi|7521287|pir||H72692 probable p60 katanin APE0960 - Aeropyrum pernix (strain
K1) >gi|5104629|dbj|BAA79944.1| (AP000060) 384aa long hypothetical
p60 katanin [Aeropyrum pernix]
Length = 384
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 384
0 150 300
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 0.00011, P = 0.00011
Identities = 30/74 (40%), Positives = 46/74 (62%), Frame = +2
Query: 278 PASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESA 457
PAS + V T+ KDGG G+ E PE +++EKP+V ++D+AGLE A
Sbjct: 79 PASGDEVYV----DTQEKDGG--GEDEAPE----------FVLKEKPSVTFDDIAGLEEA 122
Query: 458 KQALQEAVILPVKK 499
K+A++EA++ PVK+
Sbjct: 123 KKAIREAIVFPVKR 136
>gi|5901990 ref|NP_008975.1| katanin p60 subunit A 1 [Homo sapiens]
>gi|3283072|gb|AAC25114.1| (AF056022) p60 katanin [Homo sapiens]
Length = 491
Frame 2 hits (HSPs): ________ _______
__________________________________________________
Database sequence: | | | | | 491
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 23/58 (39%), Positives = 35/58 (60%), Frame = +2
Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
T+P+ D G D + L L I+ + PNV+W+D+A L AK+ L+EAV+LP+
Sbjct: 175 TEPETNKFDSTGYDKD---LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPM 229
Score = 50 (17.6 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 15/63 (23%), Positives = 28/63 (44%), Frame = +2
Query: 71 EYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIR 250
E VK A + GNY A Y L+ +L K+ +++ Q + E A+ ++
Sbjct: 8 ENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTYLQQKWQQVWQEINVEAKHVK 67
Query: 251 AVL 259
++
Sbjct: 68 DIM 70
>gi|1066104|gb|AAC13878.1| (U39735) high molecular weight basic nuclear protein
[Pleuronectes americanus]
Length = 326
Frame 3 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 326
0 150 300
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 0.00025, P = 0.00025
Identities = 50/165 (30%), Positives = 77/165 (46%), Frame = +3
Query: 21 RRRRRRRCIAISKSKQ*ST*NKR*MKTIRETTRKRFNF-T*TRWSISKRTSSTRRTLRSR 197
R ++R+R + SKS S +KR +K + T + + +R KR T + +R++
Sbjct: 9 RSQKRQRSPSRSKSPMISQSSKRRVKRPKMTAKSAIRSRSPSRSKSPKRRVQTPK-MRAK 67
Query: 198 RPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTP---RSP---QGPRRSPRT-EAKMETA 356
P SPS S PRRS + A +P RSP + P+RS +T + + +A
Sbjct: 68 SPMRSRSPSRSKSPRRSKSPKRRVQTPKMRATSPMRSRSPSRYKSPKRSVKTPKTRANSA 127
Query: 357 RIPSRP--SYGPGSTPLSLGKSPT*SGTTSRGLRAPSRLCRKRLSCP*RS 500
R P P S P + G+SP S R ++ P + R P RS
Sbjct: 128 RRPKSPMRSPSPKMRAKTRGRSPKRSNPPKRSVKTP----KTRAKSPRRS 173
Score = 97 (34.1 bits), Expect = 0.089, P = 0.085
Identities = 39/114 (34%), Positives = 54/114 (47%), Frame = +3
Query: 159 KRTSSTRRTLRSRRPSLR-NSPSISAGPRR-SGPS-STMGPAARPPAGTPRSPQGPRRSP 329
+R+ S +R R + P +R SP S P R P S P R A + R P+ P RSP
Sbjct: 82 RRSKSPKR--RVQTPKMRATSPMRSRSPSRYKSPKRSVKTPKTR--ANSARRPKSPMRSP 137
Query: 330 RTEAKMET-ARIPSR--PSYGPGSTPLSLGKSPT*SGTTSRGLRAPSRLCRKRLSCP*RS 500
+ + +T R P R P TP + KSP S + R ++ P + R P RS
Sbjct: 138 SPKMRAKTRGRSPKRSNPPKRSVKTPKTRAKSPRRSKSPKRRVQTP----KMRAKSPMRS 193
Score = 84 (29.6 bits), Expect = 3.4, P = 0.97
Identities = 47/147 (31%), Positives = 71/147 (48%), Frame = +3
Query: 33 RRRCIAISKSKQ*ST*NKR*MKT--IRETTRKRFNFT*TRWSISKRTSSTRRTLRS--RR 200
R R + SKS + S KR ++T +R T+ R +R+ KR+ T +T + RR
Sbjct: 71 RSRSPSRSKSPRRSKSPKRRVQTPKMRATSPMRSRSP-SRYKSPKRSVKTPKTRANSARR 129
Query: 201 PS--LRN-SPSISA-----GPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEAKMETA 356
P +R+ SP + A P+RS P + A +PR + P+R +T KM A
Sbjct: 130 PKSPMRSPSPKMRAKTRGRSPKRSNPPKRSVKTPKTRAKSPRRSKSPKRRVQTP-KMR-A 187
Query: 357 RIPSRPSYGPGSTPLSLGKSPT*SGTTSRGLR 452
+ P R P S P S SP S + R ++
Sbjct: 188 KSPMRSRKRPRS-P-SRSTSPMRSQSPKRRVK 217
Score = 81 (28.5 bits), Expect = 7.7, P = 1.0
Identities = 34/104 (32%), Positives = 49/104 (47%), Frame = +3
Query: 168 SSTRRTLRSRRPSLRNSPSISAGPRR--SGPSSTMGPA--ARPPAGTPRSPQGPRRSPRT 335
S R R R PS SP IS +R P T A +R P+ + +SP+ ++P+
Sbjct: 6 SPMRSQKRQRSPSRSKSPMISQSSKRRVKRPKMTAKSAIRSRSPSRS-KSPKRRVQTPKM 64
Query: 336 EAKMET-ARIPSRPSYGP--GSTPLSLGKSPT*SGTTSRGLRAPSR 464
AK +R PSR S P +P ++P T+ R+PSR
Sbjct: 65 RAKSPMRSRSPSR-SKSPRRSKSPKRRVQTPKMRATSPMRSRSPSR 109
>gi|6466293|gb|AAF12877.1|AF205377_1 (AF205377) p60 katanin [Chlamydomonas
reinhardtii]
Length = 558
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 558
0 150 300 450
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 0.00059, P = 0.00059
Identities = 29/67 (43%), Positives = 40/67 (59%), Frame = +2
Query: 305 ATRPKTKPKDGGKDGDG-----EDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQAL 469
A P KP D G G+ P+Q +L A L IV + +VKW+D+AGLE AK+ L
Sbjct: 219 AAGPGGKPGDKGSAGEKAKKQYSGPDQ-ELAAMLERDIVDQGTSVKWDDIAGLEEAKRVL 277
Query: 470 QEAVILPV 493
EA++LP+
Sbjct: 278 NEALVLPM 285
>gi|6678139 ref|NP_033302.1| simple repeat sequence-containing transcript [Mus
musculus] >gi|730888|sp|Q06666|T2_MOUSE OCTAPEPTIDE-REPEAT PROTEIN
T2 >gi|7513691|pir||S71512 hypothetical protein T2 - mouse
>gi|296382|emb|CAA48048.1| (X67863) T2 [Mus musculus]
Length = 185
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 185
0 50 100 150
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.00076, P = 0.00076
Identities = 53/166 (31%), Positives = 74/166 (44%), Frame = +1
Query: 4 AESKFIEEEGE--GDV*QFQRASNRVRETSG-R*RQ*GKLRESVSTLHERVGVFQNAPQV 174
AES+ + E G + QR R RE R R+ G+ E + + +
Sbjct: 9 AESQRVRESERQRGREAERQRERQRGREAERQRGRERGREAEREAERQRGRERQRGRGEA 68
Query: 175 REEP*DQGGHHSEIHRVSPPGRGDPGRPRRWAQRPGLQRGRRGRHKAQDEAQGRRQRWRR 354
+ + G E HR GR R A+R QRGR +A E Q RQR R+
Sbjct: 69 ERQRGRERGREVERHRRGREAERQRGRERE-AER---QRGREAEREA--ERQRERQRERQ 122
Query: 355 RGSRAGQATGRAQLRYR*GKAQREV-ERRRGA*ERQAGFAGSGYLAREEA 501
RG A + GR R R +A+++ ER+RG E +A G G R+EA
Sbjct: 123 RGREAERQRGREAERQRGREAEKQRGERQRGR-EVEAEAEGRGRGMRQEA 171
Score = 85 (29.9 bits), Expect = 0.85, P = 0.57
Identities = 25/64 (39%), Positives = 36/64 (56%), Frame = +1
Query: 283 LQRGRRGRHKAQDEAQGRRQRWR----RRGSRAGQATGRAQLRYR*GKAQREVERRRGA* 450
+QRGR ++Q + RQR R +R + G+ R + R R +A+RE ER+RG
Sbjct: 1 MQRGREREAESQRVRESERQRGREAERQRERQRGREAERQRGRERGREAEREAERQRGR- 59
Query: 451 ERQAG 465
ERQ G
Sbjct: 60 ERQRG 64
Score = 78 (27.5 bits), Expect = 6.3, P = 1.0
Identities = 55/176 (31%), Positives = 72/176 (40%), Frame = +1
Query: 4 AESKFIEEEGE--GDV*QFQRASNRVRETSG-R*RQ*GKLRESVSTLHERVGVFQNAPQV 174
AES+ + E G + QR R RE R R+ G+ E + + +
Sbjct: 9 AESQRVRESERQRGREAERQRERQRGREAERQRGRERGREAEREAERQRGRERQRGRGEA 68
Query: 175 REEP*DQGGHHSEIHRVSPPGRGDPGRPRRWAQRPGLQRGRRGRHKA--QDEAQGRRQRW 348
+ + G E HR GR R A+R QRGR +A Q E Q RQR
Sbjct: 69 ERQRGRERGREVERHRRGREAERQRGRERE-AER---QRGREAEREAERQRERQRERQRG 124
Query: 349 R----RRGSRAGQATGRAQLRYR*GKAQR--EVERR---RGA*ERQAGFA---GSGYLAR 492
R +RG A + GR + R G+ QR EVE RG RQ A G G R
Sbjct: 125 REAERQRGREAERQRGREAEKQR-GERQRGREVEAEAEGRGRGMRQEAEATEQGQGQRQR 183
Query: 493 E 495
+
Sbjct: 184 Q 184
>gi|6648606|gb|AAF21247.1|AF048706_1 (AF048706) CAD ATPase; AAA1 [Arabidopsis
thaliana] >gi|12324979|gb|AAG52435.1|AC018848_6 (AC018848) CAD
ATPase (AAA1); 35570-33019 [Arabidopsis thaliana]
Length = 523
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 523
0 150 300 450
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 0.00080, P = 0.00080
Identities = 30/76 (39%), Positives = 43/76 (56%), Frame = +2
Query: 266 GPSGPASSGDAAVATRPKTKPKDG-GKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVA 442
G G AS + A + + DG K G E P++ L A L ++ P V+W+DVA
Sbjct: 186 GKKGAASKSNKAESMNGDAE--DGKSKRGLYEGPDE-DLAAMLERDVLDSTPGVRWDDVA 242
Query: 443 GLESAKQALQEAVILPV 493
GL AK+ L+EAV+LP+
Sbjct: 243 GLSEAKRLLEEAVVLPL 259
>gi|6015472|dbj|BAA85179.1| (AB032919) dopamine receptor D4 [Hylobates
muelleri]
Length = 118
Frame 3 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 118
0 50 100
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.00080, P = 0.00080
Identities = 29/85 (34%), Positives = 37/85 (43%), Frame = +3
Query: 144 RWSISKRTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGP-AARPPAGTPRSPQGPR 320
RW +++R R RRPS PS+ PR P GP A P G P+ P GP
Sbjct: 5 RWEVARRAKLHGRA--PRRPSGPGPPSLV--PRL--PQDPCGPDCASPAPGPPQGPSGPD 58
Query: 321 RSPRTEAKMETARIPSRPSYGPGSTP 398
R+P + R P+ PG P
Sbjct: 59 RAPPAPGLPQGLRGPNCAPPVPGLPP 84
>gi|3098603|gb|AAC15706.1| (AF052191) katanin p60 subunit [Strongylocentrotus
purpuratus]
Length = 516
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 516
0 150 300 450
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0011, P = 0.0011
Identities = 27/63 (42%), Positives = 36/63 (57%), Frame = +2
Query: 317 KTKPKDGGKDGDGE--DPE--QAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVI 484
K K G++GD + DP L L IV+ PNV W D+AGL AK+ L+EAV+
Sbjct: 192 KDKKAPSGEEGDEKKFDPAGYDKDLVENLERDIVQRNPNVHWADIAGLTEAKRLLEEAVV 251
Query: 485 LPV 493
LP+
Sbjct: 252 LPL 254
>gi|7299160|gb|AAF54358.1| (AE003682) CG8866 gene product [Drosophila
melanogaster]
Length = 520
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 520
0 150 300 450
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0011, P = 0.0011
Identities = 25/70 (35%), Positives = 42/70 (60%), Frame = +2
Query: 59 EQAIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRA 238
++AI+ V QA D K NY +A+ LY +AL+YF + E + + A+ + Y +RA
Sbjct: 277 QKAIDLVTQACAYDEKHNYKEAYYLYCSALQYFVPLITEETDATKRLALRNRALSYTKRA 336
Query: 239 EEIR-AVLDD 265
EEI+ +++D
Sbjct: 337 EEIKNCIIED 346
>gi|1170404|sp|P42145|HSP1_PSECU SPERM PROTAMINE P1 >gi|598345|gb|AAA74602.1|
(L35334) protamine P1 [Pseudochirops cupreus]
Length = 69
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): _______________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..66
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 6..65
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 0.0022, Sum P(2) = 0.0022
Identities = 19/51 (37%), Positives = 25/51 (49%), Frame = +1
Query: 286 QRGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERR 438
+R RR R++ + R +R RRRG R G GR R R + R RR
Sbjct: 19 RRRRRSRYRGRRRRYRRSRRRRRRGRRRGNCLGRRGYRRR--RYSRRRRRR 67
Score = 69 (24.3 bits), Expect = 0.85, P = 0.57
Identities = 18/51 (35%), Positives = 25/51 (49%), Frame = +1
Query: 289 RGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERRR 441
R RR R + + +GRR+R+RR R + R R G +R RRR
Sbjct: 14 RYRRRRRRRRSRYRGRRRRYRRSRRRRRRGRRRGNCLGRRGYRRRRYSRRR 64
Score = 61 (21.5 bits), Expect = 6.8, P = 1.0
Identities = 22/65 (33%), Positives = 33/65 (50%), Frame = +1
Query: 298 RGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERRRGA*ERQAGFAGS 477
R RH ++ ++ R +R RRR R + GR + RYR + +R RRRG + G+
Sbjct: 3 RYRH-SRSRSRSRYRRRRRR--RRSRYRGRRR-RYRRSRRRRRRGRRRGNCLGRRGYRRR 58
Query: 478 GYLAR 492
Y R
Sbjct: 59 RYSRR 63
Score = 55 (19.4 bits), Expect = 0.12, Sum P(2) = 0.11
Identities = 18/39 (46%), Positives = 21/39 (53%), Frame = +1
Query: 250 GRPRRWAQRPGLQRGRRGRHKAQDEAQGRRQRWRRRGSR 366
GR RR+ R +R RRGR + GRR RRR SR
Sbjct: 28 GRRRRY--RRSRRRRRRGRRRGN--CLGRRGYRRRRYSR 62
Score = 37 (13.0 bits), Expect = 0.0022, Sum P(2) = 0.0022
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +3
Query: 18 HRRRRRRR 41
+RRRRRRR
Sbjct: 15 YRRRRRRR 22
>gi|5689503|dbj|BAA83035.1| (AB029006) KIAA1083 protein [Homo sapiens]
Length = 584
Frame 3 hits (HSPs): ____ ______
Frame 2 hits (HSPs): _____ ______
__________________________________________________
Database sequence: | | | | | 584
0 150 300 450
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.0024, Sum P(3) = 0.0024
Identities = 24/57 (42%), Positives = 32/57 (56%), Frame = +2
Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILP 490
T+ K K+ D A L + + IV VK++D+AG + AKQALQE VILP
Sbjct: 276 TRKKKDLKNFRNVDSNLANL---IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILP 329
Score = 59 (20.8 bits), Expect = 0.0024, Sum P(3) = 0.0024
Identities = 16/43 (37%), Positives = 22/43 (51%), Frame = +2
Query: 32 EKEMYSNFKEQAIEYVKQA--VDEDNK-GNYAKAFQLYMNALE 151
E E F +QA EY+ A +DED K G +A + Y +E
Sbjct: 112 EAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 154
Score = 51 (18.0 bits), Expect = 0.015, Sum P(3) = 0.015
Identities = 9/18 (50%), Positives = 14/18 (77%), Frame = +2
Query: 56 KEQAIEYVKQAVDEDNKG 109
KEQA+E+ K+ ++E KG
Sbjct: 142 KEQAVEWYKKGIEELEKG 159
Score = 48 (16.9 bits), Expect = 0.0024, Sum P(3) = 0.0024
Identities = 16/60 (26%), Positives = 25/60 (41%), Frame = +3
Query: 162 RTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEA 341
R+ + +T + +PS S SG GPA GTP++ + + S T A
Sbjct: 216 RSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTTA 275
Score = 47 (16.5 bits), Expect = 1.4, Sum P(2) = 0.75
Identities = 15/46 (32%), Positives = 20/46 (43%), Frame = +3
Query: 213 NSPSISAGPRRS--GPSSTMGPAARPPAGTPRSPQ-GPRRSPRTEAK 344
NSP G ++ G S+ + P PP P P GP P + K
Sbjct: 2 NSPG-GRGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESPHK 47
>gi|11875211 ref|NP_055761.2| spastin [Homo sapiens]
>gi|12230611|sp|Q9UBP0|SPAS_HUMAN SPASTIN
>gi|6273491|emb|CAB60141.1| (AJ246001) spastin protein [Homo
sapiens] >gi|6273493|emb|CAB60208.1| (AJ246003) spastin protein
[Homo sapiens]
Length = 616
Frame 3 hits (HSPs): ____ _____
Frame 2 hits (HSPs): ____ ______
__________________________________________________
Database sequence: | | | | | | 616
0 150 300 450 600
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.0029, Sum P(3) = 0.0029
Identities = 24/57 (42%), Positives = 32/57 (56%), Frame = +2
Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILP 490
T+ K K+ D A L + + IV VK++D+AG + AKQALQE VILP
Sbjct: 308 TRKKKDLKNFRNVDSNLANL---IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILP 361
Score = 59 (20.8 bits), Expect = 0.0029, Sum P(3) = 0.0029
Identities = 16/43 (37%), Positives = 22/43 (51%), Frame = +2
Query: 32 EKEMYSNFKEQAIEYVKQA--VDEDNK-GNYAKAFQLYMNALE 151
E E F +QA EY+ A +DED K G +A + Y +E
Sbjct: 112 EAERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 154
Score = 51 (18.0 bits), Expect = 0.018, Sum P(3) = 0.017
Identities = 9/18 (50%), Positives = 14/18 (77%), Frame = +2
Query: 56 KEQAIEYVKQAVDEDNKG 109
KEQA+E+ K+ ++E KG
Sbjct: 142 KEQAVEWYKKGIEELEKG 159
Score = 48 (16.9 bits), Expect = 0.0029, Sum P(3) = 0.0029
Identities = 16/60 (26%), Positives = 25/60 (41%), Frame = +3
Query: 162 RTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEA 341
R+ + +T + +PS S SG GPA GTP++ + + S T A
Sbjct: 248 RSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTHKGTPKTNRTNKPSTPTTA 307
Score = 47 (16.5 bits), Expect = 1.6, Sum P(2) = 0.80
Identities = 15/46 (32%), Positives = 20/46 (43%), Frame = +3
Query: 213 NSPSISAGPRRS--GPSSTMGPAARPPAGTPRSPQ-GPRRSPRTEAK 344
NSP G ++ G S+ + P PP P P GP P + K
Sbjct: 2 NSPG-GRGKKKGSGGASNPVPPRPPPPCLAPAPPAAGPAPPPESPHK 47
>gi|1082601|pir||S55461 mucin - human (fragment) >gi|853956|emb|CAA58319.1|
(X83412) mucin [Homo sapiens]
Length = 171
Frame 3 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 171
0 50 100 150
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.0051, P = 0.0051
Identities = 37/96 (38%), Positives = 47/96 (48%), Frame = +3
Query: 165 TSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEAK 344
TSS RT + +R L+ P+ G RR S GP+ARP A T + +G R SP + +
Sbjct: 49 TSSGHRTEKRKRLQLQCQPAGGTGQRRG---SGQGPSARPAAFTGQR-RGSRSSPSADQQ 104
Query: 345 M------ETARIPSRPSYGPGSTPLSLGKS-PT*SGTTSR 443
E AR RP+ G G S PT SGT R
Sbjct: 105 RAQDREEEAARPQRRPAAGTGQRRGSAAAPVPTSSGTGQR 144
>gi|6630459|gb|AAF19547.1|AC007190_15 (AC007190) F23N19.12 [Arabidopsis
thaliana]
Length = 312
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.0059, P = 0.0059
Identities = 32/86 (37%), Positives = 44/86 (51%), Frame = +3
Query: 165 TSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARPPAG-TPRSPQGPRRSPRTEA 341
TSS+ + S PSL SP S+ P S P S++ P++ PP +P SP P S +
Sbjct: 22 TSSSSLSPSSSSPSLSPSPP-SSSPS-SAPPSSLSPSSPPPLSLSPSSPPPPPPSSSPLS 79
Query: 342 KMETARIPSRPSYGPGSTPLSLGKSPT 422
+ + PS PS P S P S SP+
Sbjct: 80 SLSPSLSPSPPSSSPSSAPPS-SLSPS 105
>gi|7594619|emb|CAB88114.1| (AL078581) dJ12G14.4 (katanin p60
(ATPase-containing) subunit A 1) [Homo sapiens]
Length = 384
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 384
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0061, P = 0.0061
Identities = 23/58 (39%), Positives = 35/58 (60%), Frame = +2
Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
T+P+ D G D + L L I+ + PNV+W+D+A L AK+ L+EAV+LP+
Sbjct: 68 TEPETNKFDSTGYDKD---LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPM 122
>gi|11418569 ref|XP_004304.1| katanin p60 (ATPase-containing) subunit A 1 [Homo
sapiens]
Length = 385
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 385
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0061, P = 0.0061
Identities = 23/58 (39%), Positives = 35/58 (60%), Frame = +2
Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
T+P+ D G D + L L I+ + PNV+W+D+A L AK+ L+EAV+LP+
Sbjct: 70 TEPETNKFDSTGYDKD---LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPM 124
>gi|12732306 ref|XP_011451.1| katanin p60 subunit A 1 [Homo sapiens]
Length = 386
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 386
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0061, P = 0.0061
Identities = 23/58 (39%), Positives = 35/58 (60%), Frame = +2
Query: 320 TKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
T+P+ D G D + L L I+ + PNV+W+D+A L AK+ L+EAV+LP+
Sbjct: 70 TEPETNKFDSTGYDKD---LVEALERDIISQNPNVRWDDIADLVEAKKLLKEAVVLPM 124
>gi|7296674|gb|AAF51954.1| (AE003601) CG1193 gene product [alt 2] [Drosophila
melanogaster]
Length = 669
Frame 2 hits (HSPs): __ _____
__________________________________________________
Database sequence: | | | | | | 669
0 150 300 450 600
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.0095, Sum P(2) = 0.0094
Identities = 27/60 (45%), Positives = 31/60 (51%), Frame = +2
Query: 314 PKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
PK PK K E L L I++ P +KW DVAGL AK LQEAV+LPV
Sbjct: 352 PKCSPKTKAKHFSPLGYE-VHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPV 410
Score = 39 (13.7 bits), Expect = 0.0095, Sum P(2) = 0.0094
Identities = 8/19 (42%), Positives = 11/19 (57%), Frame = +2
Query: 272 SGPASSGDAAVATRPKTKP 328
S P A+ATRP++ P
Sbjct: 57 SNPVLGRSNALATRPQSPP 75
>gi|1170390|sp|P42131|HSP1_CAEFU SPERM PROTAMINE P1 >gi|598099|gb|AAA74598.1|
(L35332) protamine P1 [Caenolestes fuliginosus]
Length = 61
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): _____________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..59
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..58
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 0.019, Sum P(2) = 0.019
Identities = 15/40 (37%), Positives = 22/40 (55%), Frame = +1
Query: 286 QRGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR 405
+R RR R++++ R +R RRRG R G + R R R
Sbjct: 19 RRRRRSRYRSRRRRYRRSRRRRRRGRRRGYSRRRYSRRRR 58
Score = 60 (21.1 bits), Expect = 8.8, P = 1.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Frame = +1
Query: 289 RGRRGRHKAQDEAQGRRQRWRR--RGSRAGQATGRAQLRY 402
R RR R + + + RR+R+RR R R G+ G ++ RY
Sbjct: 14 RYRRRRRRRRSRYRSRRRRYRRSRRRRRRGRRRGYSRRRY 53
Score = 37 (13.0 bits), Expect = 0.019, Sum P(2) = 0.019
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +3
Query: 18 HRRRRRRR 41
+RRRRRRR
Sbjct: 15 YRRRRRRR 22
>gi|7296675|gb|AAF51955.1| (AE003601) CG1193 gene product [alt 1] [Drosophila
melanogaster]
Length = 554
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 554
0 150 300 450
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.019, P = 0.019
Identities = 27/60 (45%), Positives = 31/60 (51%), Frame = +2
Query: 314 PKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKWNDVAGLESAKQALQEAVILPV 493
PK PK K E L L I++ P +KW DVAGL AK LQEAV+LPV
Sbjct: 237 PKCSPKTKAKHFSPLGYE-VHLVDTLEKDILQRHPCIKWTDVAGLNEAKTILQEAVVLPV 295
>gi|4809337|gb|AAD30182.1|AC006530_4 (AC006530) unknown [Homo sapiens]
Length = 549
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 549
0 150 300 450
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.026, P = 0.026
Identities = 29/87 (33%), Positives = 47/87 (54%), Frame = +2
Query: 65 AIEYVKQAVDEDNKGNYAKAFQLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEE 244
A ++ A++ D +Y AF Y N ++ + + N + +EA+ K T+YLRRAEE
Sbjct: 53 AATQIRLALERDVSEDYEAAFNHYQNGVDVLLRGIHVDPNKERREAVKLKITKYLRRAEE 112
Query: 245 I-----RAVLDDGPSGPASSGDAAVATRP 316
I + L G S P S+G +++ RP
Sbjct: 113 IFNCHLQRPLSSGAS-P-SAGFSSLRLRP 139
>gi|479301|pir||S33375 homeotic protein Abd-B - desert locust (fragment)
Length = 131
Frame 3 hits (HSPs): ________________________________
Annotated Domains: _________________________
__________________________________________________
Database sequence: | | | | 131
0 50 100
__________________
Annotated Domains:
DOMO DM00009: HOMEOBOX 9..72
Entrez domain: homeobox homology #label HOX 14..70
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 46..69
__________________
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.029, P = 0.028
Identities = 27/83 (32%), Positives = 43/83 (51%), Frame = +3
Query: 144 RWSISKRTSSTRRTLR----SRR-PSLRNSP--SISAGPRRSGPSSTMGPAARPPAGTPR 302
RW +++ + T R ++ +RR + +NS + S+ S SS+ + RPPAG
Sbjct: 43 RWELARNLNLTERQVKIWFQNRRMKNKKNSQRQAASSSSSNSSSSSSSNSSKRPPAGRRP 102
Query: 303 SPQGPRRSPRTEAKMETARIPSRPS 377
P R + RT + TA PS+PS
Sbjct: 103 PPTATRATKRTTTRPPTA--PSQPS 125
>gi|11432409 ref|XP_005944.1| paired box gene 2 [Homo sapiens] >gi|11432413
ref|XP_005946.1| paired box gene 2 [Homo sapiens] >gi|12735810
ref|XP_011934.1| paired box protein 2 isoform b [Homo sapiens]
>gi|12735814 ref|XP_011932.1| paired box protein 2, isoform d [Homo
sapiens]
Length = 131
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 131
0 50 100
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.029, P = 0.028
Identities = 28/74 (37%), Positives = 37/74 (50%), Frame = +3
Query: 201 PSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRS-PQGPRRSPRTEA----KMETARIP 365
P+ R SP RR G S+ + PA+ PA P S P G R A ++AR
Sbjct: 46 PACRPSPPAWTARRREGDSAQLVPASTKPAPKPASHPAGLGRDLLARAGCFCDTQSARTA 105
Query: 366 SRPSYGPGSTPLSLGK 413
+RPS PG P +LG+
Sbjct: 106 ARPS--PGHPPRTLGR 119
>gi|9759619|dbj|BAB11561.1| (AB011479) gene_id:MNA5.12~unknown protein
[Arabidopsis thaliana]
Length = 130
Frame 3 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 130
0 50 100
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.037, P = 0.037
Identities = 23/68 (33%), Positives = 33/68 (48%), Frame = +3
Query: 201 PSLRNSPSISAGPRRSGPSSTMGPAARPPAGTPRSPQGPRRSPRTEAKMETARIPSRPSY 380
P+ P++S P S PSS P++ P +P +P+GP SP E A PS S
Sbjct: 48 PTTTPPPAVSPAPTSSPPSSAPSPSSDAPTASPPAPEGPGVSPG-----ELAPTPSDASA 102
Query: 381 GPGSTPLS 404
P + L+
Sbjct: 103 PPPNAALT 110
>gi|1582120|prf||2117429N protamine P1 [Pseudochirops cupreus]
Length = 62
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.50, P = 0.39
Identities = 21/57 (36%), Positives = 31/57 (54%), Frame = +1
Query: 238 RGDPGRPR-RWAQRPGLQRGR-RGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRY 402
R R R R+ +R +R R RGR + ++ RR+R RRRG R + + R + RY
Sbjct: 5 RHSRSRSRSRYRRRRRRRRSRYRGRRRRYRRSRRRRRRGRRRGYRRRRYSRRRRRRY 61
Score = 64 (22.5 bits), Expect = 3.1, P = 0.96
Identities = 16/40 (40%), Positives = 23/40 (57%), Frame = +1
Query: 289 RGRRGRHKAQDEAQGRRQRWRR--RGSRAGQATGRAQLRY 402
R RR R + + +GRR+R+RR R R G+ G + RY
Sbjct: 14 RYRRRRRRRRSRYRGRRRRYRRSRRRRRRGRRRGYRRRRY 53
Score = 62 (21.8 bits), Expect = 5.2, P = 0.99
Identities = 20/51 (39%), Positives = 27/51 (52%), Frame = +1
Query: 289 RGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERRR 441
R RR R + + +GRR+R+RR SR + GR R G +R RRR
Sbjct: 14 RYRRRRRRRRSRYRGRRRRYRR--SRRRRRRGR-----RRGYRRRRYSRRR 57
Score = 60 (21.1 bits), Expect = 8.8, P = 1.0
Identities = 19/49 (38%), Positives = 28/49 (57%), Frame = +1
Query: 298 RGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR*GKAQREVERRRG 444
R RH ++ ++ R +R RRR R + GR + RYR + +R RRRG
Sbjct: 3 RYRH-SRSRSRSRYRRRRRR--RRSRYRGRRR-RYRRSRRRRRRGRRRG 47
Score = 59 (20.8 bits), Expect = 0.041, Sum P(2) = 0.040
Identities = 15/40 (37%), Positives = 20/40 (50%), Frame = +1
Query: 286 QRGRRGRHKAQDEAQGRRQRWRRRGSRAGQATGRAQLRYR 405
+R RR R++ + R +R RRRG R G R R R
Sbjct: 19 RRRRRSRYRGRRRRYRRSRRRRRRGRRRGYRRRRYSRRRR 58
Score = 37 (13.0 bits), Expect = 0.041, Sum P(2) = 0.040
Identities = 7/8 (87%), Positives = 8/8 (100%), Frame = +3
Query: 18 HRRRRRRR 41
+RRRRRRR
Sbjct: 15 YRRRRRRR 22
>gi|12230605|sp|Q9QYY8|SPAS_MOUSE SPASTIN >gi|6273572|emb|CAB60143.1|
(AJ246002) spastin protein orthologue [Mus musculus]
Length = 504
Frame 2 hits (HSPs): ___ ________
__________________________________________________
Database sequence: | | | | | 504
0 150 300 450
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.045, Sum P(2) = 0.044
Identities = 30/80 (37%), Positives = 38/80 (47%), Frame = +2
Query: 251 AVLDDGPSGPASSGDAAVATRPKTKPKDGGKDGDGEDPEQAKLRAGLNSAIVREKPNVKW 430
A G P + + T K KD K+ D A L + + IV VK+
Sbjct: 174 ATTHKGTPKPNRTNKPSTPTTAVRKKKDL-KNFRNVDSNLANL---IMNEIVDNGTAVKF 229
Query: 431 NDVAGLESAKQALQEAVILP 490
+D+AG E AKQALQE VILP
Sbjct: 230 DDIAGQELAKQALQEIVILP 249
Score = 53 (18.7 bits), Expect = 0.045, Sum P(2) = 0.044
Identities = 10/26 (38%), Positives = 18/26 (69%), Frame = +2
Query: 32 EKEMYSNFKEQAIEYVKQAVDEDNKG 109
++E + KEQA+E+ K+ ++E KG
Sbjct: 22 DEEEKAGQKEQAVEWYKKGIEELEKG 47
>gi|1076211|pir||S50755 hypothetical protein VSP-3 - Chlamydomonas reinhardtii
>gi|530876|gb|AAB53953.1| (L29029) amino acid feature: Rod protein
domain, aa 266 .. 468; amino acid feature: globular protein domain,
aa 32 .. 265 [Chlamydomonas reinhardtii]
Length = 473
Frame 3 hits (HSPs): _______________________
Annotated Domains: ________________________
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
__________________
Annotated Domains:
DOMO DM00698: 218..328
DOMO DM00698: 330..431
__________________
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.051, P = 0.049
Identities = 42/116 (36%), Positives = 50/116 (43%), Frame = +3
Query: 114 TRKRFNFT*TRWSISKRTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARP-PA 290
T FN T S S + S + + S P SPS A P S PS P+ P P
Sbjct: 256 TLANFNRTGASPSPSPKASPSPKVSPSPSPKASPSPSPKASPSPS-PSPKASPSPSPSPK 314
Query: 291 GTPRSPQGPRRSPRTEAKMETARIPSRPSYGPGSTPL-SLGKSPT*SGTTSRGLRAPS 461
+P SP P SP K + PS PS P S P S SP+ S S L +PS
Sbjct: 315 ASP-SPS-PSPSPSPSPKASPSPSPS-PSVQPASKPSPSPSPSPSPSPRPSPPLPSPS 369
Score = 87 (30.6 bits), Expect = 2.5, P = 0.92
Identities = 32/90 (35%), Positives = 45/90 (50%), Frame = +3
Query: 198 RPSLRNSPSISAGPRRSGPSSTMGPAARP-PAGTPR-SPQ-GPRRSPRTEAKMETARIPS 368
+PS SPS S PR S P + P+ P P+ +P SP+ P SP + + PS
Sbjct: 346 KPSPSPSPSPSPSPRPSPPLPSPSPSPSPSPSPSPSPSPKPSPSPSPSPSPSPKPSPSPS 405
Query: 369 RPSYGPGSTPLSLGKSPT*SGTTSRGLRA-PS 461
PS P +P + SP+ S + S +A PS
Sbjct: 406 -PSPSPSPSP-KVSPSPSPSPSPSPSPKASPS 435
Score = 85 (29.9 bits), Expect = 4.3, P = 0.99
Identities = 29/89 (32%), Positives = 40/89 (44%), Frame = +3
Query: 156 SKRTSSTRRTLRSRRPSLRNSPSISAGPRRSGPSSTMGPAARP-PAGTPRSPQGPRRSPR 332
S S + + S PS SPS A P S PS ++ PA++P P+ +P PR SP
Sbjct: 306 SPSPSPSPKASPSPSPSPSPSPSPKASPSPS-PSPSVQPASKPSPSPSPSPSPSPRPSPP 364
Query: 333 TEAKMETARIPSRPSYGPGSTPLSLGKSPT 422
+ + PS P P S SP+
Sbjct: 365 LPSPSPSPSPSPSPSPSPSPKP-SPSPSPS 393
Score = 82 (28.9 bits), Expect = 9.7, P = 1.0
Identities = 27/77 (35%), Positives = 35/77 (45%), Frame = +3
Query: 192 SRRPSLRNSPSISAGPRRSGPSSTMGPAARP-PAGTPRSPQGPRRSPRTEAKMETARIPS 368
S +PS SPS S P+ S PS + P+ P P +P P SP +A A+ PS
Sbjct: 383 SPKPSPSPSPSPSPSPKPS-PSPSPSPSPSPSPKVSPSPSPSPSPSPSPKASPSPAKKPS 441
Query: 369 RPS-YGPGSTPLSLGKSP 419
P G+ P G P
Sbjct: 442 PPPPVEEGAPPPIEGPPP 459
Score = 82 (28.9 bits), Expect = 9.7, P = 1.0
Identities = 31/88 (35%), Positives = 40/88 (45%), Frame = +3
Query: 201 PSLRNSPSISAGPRRSGPSSTMGPAARP-PAGTPR-SPQ-GPRRSPRTEAKMETARIPS- 368
PS SPS S P S PS P+ P P+ +P+ SP P SP K+ + PS
Sbjct: 366 PSPSPSPSPSPSPSPS-PSPKPSPSPSPSPSPSPKPSPSPSPSPSPSPSPKVSPSPSPSP 424
Query: 369 RPSYGPGSTPLSLGKSPT*SGTTSRGLRAP 458
PS P ++P S K P+ G P
Sbjct: 425 SPSPSPKASP-SPAKKPSPPPPVEEGAPPP 453
WARNING: HSPs involving 370 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.144 0.462
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.312 0.130 0.363 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.336 0.147 0.466
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.343 0.146 0.464
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.352 0.152 0.617
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.160 0.493
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
+2 0 172 171 10. 75 3 12 23 0.091 35
31 0.11 37
+1 0 173 172 10. 75 3 12 22 0.11 34
31 0.11 37
-1 0 173 172 10. 75 3 12 22 0.11 34
31 0.11 37
-2 0 172 172 10. 75 3 12 22 0.11 34
31 0.11 37
-3 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 420
No. of states in DFA: 592 (58 KB)
Total size of DFA: 174 KB (192 KB)
Time to generate neighborhood: 0.00u 0.02s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 216.43u 0.97s 217.40t Elapsed: 00:00:43
Total cpu time: 216.46u 1.04s 217.50t Elapsed: 00:00:44
Start: Mon Feb 4 18:37:24 2002 End: Mon Feb 4 18:38:08 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000