BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE2740
(162 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42528240|ref|NP_973338.1| type I restriction-modificatio... 328 8e-89
gi|23452768|gb|AAN33154.1| putative type I specificity subu... 154 2e-36
gi|40467|emb|CAA35604.1| HsdS polypeptide, part of CfrA fam... 116 3e-25
gi|20807979|ref|NP_623150.1| Restriction endonuclease S sub... 114 1e-24
gi|68550910|ref|ZP_00590345.1| Restriction modification sys... 105 1e-21
gi|19881243|gb|AAM00852.1|AF486551_3 HsdS [Campylobacter je... 101 1e-20
gi|15792859|ref|NP_282682.1| putative type I restriction en... 101 1e-20
gi|126661170|ref|ZP_01732247.1| type I restriction-modifica... 98 2e-19
gi|84489266|ref|YP_447498.1| hypothetical protein Msp_0455 ... 93 4e-18
gi|15669726|ref|NP_248539.1| type I restriction-modificatio... 91 2e-17
gi|150388684|ref|YP_001318733.1| restriction modification s... 91 2e-17
gi|134097471|ref|YP_001103132.1| putative restriction modif... 87 3e-16
gi|121541757|ref|ZP_01673502.1| Restriction endonuclease S ... 86 1e-15
gi|21228395|ref|NP_634317.1| type I restriction-modificatio... 85 1e-15
gi|52082594|ref|YP_081385.1| HsdS [Bacillus licheniformis A... 85 1e-15
gi|91772548|ref|YP_565240.1| restriction modification syste... 85 2e-15
gi|42779918|ref|NP_977165.1| type I restriction-modificatio... 83 4e-15
gi|148544100|ref|YP_001271470.1| restriction modification s... 82 1e-14
gi|31983512|ref|NP_858124.1| putative type i restriction en... 82 1e-14
gi|55820774|ref|YP_139216.1| type I restriction-modificatio... 81 2e-14
gi|89210922|ref|ZP_01189304.1| Restriction modification sys... 80 3e-14
gi|111222733|ref|YP_713527.1| Type I restriction modificati... 79 9e-14
gi|77415025|ref|ZP_00791100.1| Type I restriction modificat... 79 1e-13
gi|119491619|ref|ZP_01623491.1| hypothetical protein L8106_... 77 2e-13
gi|146319105|ref|YP_001198817.1| type I restriction-modific... 76 7e-13
gi|154173663|ref|YP_001408732.1| type I restriction-modific... 75 9e-13
gi|156864174|gb|EDO57605.1| hypothetical protein CLOL250_01... 75 9e-13
gi|156864459|gb|EDO57890.1| hypothetical protein CLOL250_01... 75 9e-13
gi|146321309|ref|YP_001201020.1| type I restriction-modific... 75 1e-12
gi|60681333|ref|YP_211477.1| putative type IC restriction-m... 75 1e-12
gi|71904273|ref|YP_281076.1| type I restriction-modificatio... 75 2e-12
gi|19746826|ref|NP_607962.1| putative specificity determina... 74 2e-12
gi|139474405|ref|YP_001129121.1| type I restriction-modific... 74 3e-12
gi|94989255|ref|YP_597356.1| type I restriction-modificatio... 74 3e-12
gi|15675718|ref|NP_269892.1| putative type I site-specific ... 74 4e-12
gi|21911179|ref|NP_665447.1| putative type I site-specific ... 74 4e-12
gi|94993143|ref|YP_601242.1| Type I restriction-modificatio... 73 4e-12
gi|91213998|ref|YP_543984.1| HsdS, type I site-specific deo... 72 9e-12
gi|126090307|ref|YP_001041762.1| restriction modification s... 71 2e-11
gi|71024881|ref|YP_263290.1| HsdS [Lactococcus lactis subsp... 70 3e-11
gi|32455448|ref|NP_862562.1| HsdS [Lactococcus lactis] >gi|... 70 3e-11
gi|153808175|ref|ZP_01960843.1| hypothetical protein BACCAC... 69 8e-11
gi|15678961|ref|NP_276078.1| type I restriction modificatio... 67 3e-10
gi|2129238|pir||B64316 restriction modification system S ch... 67 4e-10
gi|126007743|ref|ZP_01708319.1| hypothetical protein Faci_0... 66 6e-10
gi|99078515|ref|YP_611773.1| restriction modification syste... 65 1e-09
gi|15669898|ref|NP_247095.1| Type I restriction-modificatio... 65 1e-09
gi|15611482|ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPE... 65 2e-09
gi|21673510|ref|NP_661575.1| type I restriction system spec... 64 4e-09
gi|149369906|ref|ZP_01889757.1| type I restriction-modifica... 63 4e-09
gi|26554275|ref|NP_758209.1| type I restriction-modificatio... 63 4e-09
gi|154174911|ref|YP_001408734.1| putative type I restrictio... 63 5e-09
gi|17232094|ref|NP_488642.1| type I site-specific deoxyribo... 62 8e-09
gi|15645090|ref|NP_207260.1| type I restriction enzyme S pr... 62 1e-08
gi|154245043|ref|YP_001416001.1| restriction modification s... 61 2e-08
gi|145622248|ref|ZP_01778209.1| hypothetical protein PmobDR... 60 3e-08
gi|126208116|ref|YP_001053341.1| putative type I restrictio... 60 4e-08
gi|75909474|ref|YP_323770.1| Restriction modification syste... 60 4e-08
gi|2826248|gb|AAB98112.1| type I restriction-modification e... 60 6e-08
gi|120601902|ref|YP_966302.1| restriction modification syst... 59 7e-08
gi|21228301|ref|NP_634223.1| type I restriction-modificatio... 59 8e-08
gi|32266920|ref|NP_860952.1| hypothetical protein HH1421 [H... 59 9e-08
gi|67919739|ref|ZP_00513304.1| Restriction modification sys... 59 1e-07
gi|23452743|gb|AAN33142.1| putative type I specificity subu... 59 1e-07
gi|156866399|gb|EDO59771.1| hypothetical protein CLOLEP_038... 58 1e-07
gi|94267246|ref|ZP_01290822.1| Restriction modification sys... 57 3e-07
gi|26554274|ref|NP_758208.1| type I restriction-modificatio... 57 4e-07
gi|94263107|ref|ZP_01286925.1| Restriction modification sys... 57 4e-07
gi|10954528|ref|NP_044167.1| type I restriction enzyme subu... 57 5e-07
gi|51893047|ref|YP_075738.1| type I restriction-modificatio... 56 6e-07
gi|23452748|gb|AAN33144.1| putative type I specificity subu... 55 9e-07
gi|149115916|ref|ZP_01842652.1| restriction modification sy... 55 1e-06
gi|26991425|ref|NP_746850.1| type I restriction-modificatio... 55 1e-06
gi|94266803|ref|ZP_01290467.1| Restriction modification sys... 55 1e-06
gi|150401945|ref|YP_001329239.1| restriction modification s... 55 1e-06
gi|119356723|ref|YP_911367.1| N-6 DNA methylase [Chlorobium... 55 2e-06
gi|42528243|ref|NP_973341.1| type I restriction-modificatio... 55 2e-06
gi|89098144|ref|ZP_01171029.1| type I restriction modificat... 54 2e-06
gi|118743998|ref|ZP_01591997.1| restriction modification sy... 54 2e-06
gi|148544101|ref|YP_001271471.1| restriction modification s... 54 2e-06
gi|150006638|ref|YP_001301382.1| type I restriction enzyme ... 54 3e-06
gi|124520753|ref|ZP_01695856.1| restriction modification sy... 54 4e-06
gi|121608003|ref|YP_995810.1| restriction modification syst... 54 4e-06
gi|152991445|ref|YP_001357167.1| type I restriction-modific... 53 6e-06
>gi|42528240|ref|NP_973338.1| type I restriction-modification system, S subunit, truncation
[Treponema denticola ATCC 35405]
gi|41819510|gb|AAS13257.1| type I restriction-modification system, S subunit, truncation
[Treponema denticola ATCC 35405]
Length = 162
Score = 328 bits (840), Expect = 8e-89, Method: Composition-based stats.
Identities = 162/162 (100%), Positives = 162/162 (100%)
Query: 1 MWCRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKN 60
MWCRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKN
Sbjct: 1 MWCRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKN 60
Query: 61 AILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTF 120
AILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTF
Sbjct: 61 AILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTF 120
Query: 121 QAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
QAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL
Sbjct: 121 QAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
>gi|23452768|gb|AAN33154.1| putative type I specificity subunit HsdS [Campylobacter jejuni]
gi|23452773|gb|AAN33157.1| putative type I specificity subunit HsdS [Campylobacter jejuni]
gi|23452787|gb|AAN33165.1| putative type I specificity subunit HsdS [Campylobacter jejuni]
Length = 403
Score = 154 bits (388), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/156 (49%), Positives = 108/156 (69%), Gaps = 4/156 (2%)
Query: 4 RLGEICSITMGQSPESSFI---SNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKN 60
RL E+C + MGQSP + I N D +EFHQGKI F++KYI ++N T ++ KIA KN
Sbjct: 12 RLEEVCEVVMGQSPNGNCIFDKDKNKDLIEFHQGKIAFSDKYIDESNFVTSDVKKIAKKN 71
Query: 61 AILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTF 120
+++LCVRAPVG VNIT ++I IGRGLCS+ +I + F F++L K F STG+TF
Sbjct: 72 SVVLCVRAPVGEVNITTKDIAIGRGLCSL-NGVKINNNFLFFYLLTLKKYFNDNSTGSTF 130
Query: 121 QAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLD 156
+AI++ +IK IPLPP EQ+RIV ++ F+++D
Sbjct: 131 KAINVRVIKETKIPLPPLKEQERIVGILDFAFSKID 166
>gi|40467|emb|CAA35604.1| HsdS polypeptide, part of CfrA family [Citrobacter freundii]
Length = 578
Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 2 WCRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNA 61
W RLGE I MGQS S + + + +G+ F QGK F +KY A + + TK+A KN
Sbjct: 107 WVRLGEAFYIEMGQSXSSQYYNQSEEGIPFFQGKADFGKKY-PTARYWCTSPTKLAQKND 165
Query: 62 ILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQ 121
+LL VRAPVG N++ CIGRGL ++ E+ Y L+ + E+ +TGTTF
Sbjct: 166 VLLSVRAPVGPTNLSPYHCCIGRGLAAIRCLSDAPHEYLLYILKASQRRLEELATGTTFV 225
Query: 122 AISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
A+S I+ +L+P+PP +EQ RIV I+ L + D +
Sbjct: 226 AVSKTDIEPLLMPIPPLNEQIRIVDTIDRLMSLCDQL 262
>gi|20807979|ref|NP_623150.1| Restriction endonuclease S subunits [Thermoanaerobacter
tengcongensis MB4]
gi|20516553|gb|AAM24754.1| Restriction endonuclease S subunits [Thermoanaerobacter
tengcongensis MB4]
Length = 398
Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 2 WCRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNA 61
W RLGE+C I MGQSP SS + +G+ F QGK F + + + K+A
Sbjct: 216 WVRLGEVCDIIMGQSPPSSTYNFEGNGLPFFQGKADFGDLH-PTPRIWCSAPQKVARPGD 274
Query: 62 ILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQ 121
+L+ VRAPVG N+ CIGRGL ++ P+ ++ + Y+L + + G+TF
Sbjct: 275 VLISVRAPVGSTNVANLACCIGRGLAALRPRDSLERFWLLYYLHYLEPELSKMGAGSTFN 334
Query: 122 AISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
AI+ + ++N+ IPLPP EQ+RIVA ++++ Q+ ++
Sbjct: 335 AITKKDLQNVFIPLPPLEEQRRIVAYLDQIQQQVAAL 371
>gi|68550910|ref|ZP_00590345.1| Restriction modification system DNA specificity domain [Pelodictyon
phaeoclathratiforme BU-1]
gi|68242209|gb|EAN24435.1| Restriction modification system DNA specificity domain [Pelodictyon
phaeoclathratiforme BU-1]
Length = 392
Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 3/150 (2%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
L ++ +I GQSPESS ++ +DG+ F QGK F +K+ + K A IL+
Sbjct: 6 LQQVTTIIAGQSPESSTYNSIADGLPFFQGKADFQDKFPKVRIWCNSAKRKEADPGDILM 65
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAIS 124
VRAPVG VNI ++ IGRGL ++ P + + F +Y+L+C + TG+TFQAI+
Sbjct: 66 SVRAPVGSVNICNQKCIIGRGLSAIRPDANLNNYFLYYYLKCNEKNVASLGTGSTFQAIT 125
Query: 125 IELIKNILIPLPPSSEQKR---IVAKIEEL 151
+K + +PLPP +Q R +++K+E L
Sbjct: 126 QTTLKRLDVPLPPLDDQIRSATLLSKVENL 155
>gi|19881243|gb|AAM00852.1|AF486551_3 HsdS [Campylobacter jejuni]
Length = 380
Score = 101 bits (252), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 3 CRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAI 62
C+LG+I ITMGQSP+S F + ++ GM F QG F KY + Y KIA K I
Sbjct: 7 CKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGRKY-PYFDTYCTEYKKIAKKGEI 65
Query: 63 LLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQA 122
L VRAPVG +N +ICIGRGLCS+ K ++EF +Y L + +G+ F +
Sbjct: 66 LFSVRAPVGDINFANNDICIGRGLCSMNAK-NGENEFLYYLLHNLRSVIINNESGSVFGS 124
Query: 123 ISIELIKNILIPLPPSSEQKRIVA-------KIEELFAQ 154
++ ++ I I LP EQ++I KIE L Q
Sbjct: 125 VNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELLHEQ 163
>gi|15792859|ref|NP_282682.1| putative type I restriction enzyme S protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
gi|86149261|ref|ZP_01067492.1| HsdS [Campylobacter jejuni subsp. jejuni CF93-6]
gi|88596768|ref|ZP_01100005.1| HsdS [Campylobacter jejuni subsp. jejuni 84-25]
gi|121612440|ref|YP_001001191.1| HsdS [Campylobacter jejuni subsp. jejuni 81-176]
gi|19881204|gb|AAM00820.1|AF486544_3 HsdS [Campylobacter jejuni]
gi|19881210|gb|AAM00825.1|AF486545_3 HsdS [Campylobacter jejuni]
gi|19881237|gb|AAM00847.1|AF486550_3 HsdS [Campylobacter jejuni]
gi|19881285|gb|AAM00887.1|AF486558_3 HsdS [Campylobacter jejuni]
gi|19881289|gb|AAM00890.1|AF486559_1 HsdS [Campylobacter jejuni]
gi|19881291|gb|AAM00891.1|AF486560_1 HsdS [Campylobacter jejuni]
gi|19881293|gb|AAM00892.1|AF486561_1 HsdS [Campylobacter jejuni]
gi|19881295|gb|AAM00893.1|AF486562_1 HsdS [Campylobacter jejuni]
gi|19881297|gb|AAM00894.1|AF486563_1 HsdS [Campylobacter jejuni]
gi|19881301|gb|AAM00896.1|AF486565_1 HsdS [Campylobacter jejuni]
gi|19881303|gb|AAM00897.1|AF486566_1 HsdS [Campylobacter jejuni]
gi|19881306|gb|AAM00898.1|AF486568_1 HsdS [Campylobacter jejuni]
gi|19881308|gb|AAM00899.1|AF486569_1 HsdS [Campylobacter jejuni]
gi|85840043|gb|EAQ57301.1| HsdS [Campylobacter jejuni subsp. jejuni CF93-6]
gi|87249550|gb|EAQ72509.1| HsdS [Campylobacter jejuni subsp. jejuni 81-176]
gi|88191609|gb|EAQ95581.1| HsdS [Campylobacter jejuni subsp. jejuni 84-25]
gi|112360850|emb|CAL35651.1| putative type I restriction enzyme S protein [Campylobacter jejuni
subsp. jejuni NCTC 11168]
Length = 380
Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 86/159 (54%), Gaps = 9/159 (5%)
Query: 3 CRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAI 62
C+LG+I ITMGQSP+S F + ++ GM F QG F KY + Y KIA K I
Sbjct: 7 CKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGRKY-PYFDTYCTEYKKIAKKGEI 65
Query: 63 LLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQA 122
L VRAPVG +N +ICIGRGLCS+ K ++EF +Y L + +G+ F +
Sbjct: 66 LFSVRAPVGDINFANNDICIGRGLCSMNAK-NGENEFLYYLLHNLRSVIINNESGSVFGS 124
Query: 123 ISIELIKNILIPLPPSSEQKRIVA-------KIEELFAQ 154
++ ++ I I LP EQ++I KIE L Q
Sbjct: 125 VNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELLHEQ 163
>gi|126661170|ref|ZP_01732247.1| type I restriction-modification enzyme, S subunit, putative
[Cyanothece sp. CCY0110]
gi|126617543|gb|EAZ88335.1| type I restriction-modification enzyme, S subunit, putative
[Cyanothece sp. CCY0110]
Length = 191
Score = 98.2 bits (243), Expect = 2e-19, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 1/143 (0%)
Query: 4 RLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAIL 63
+LG+I I GQSP+S F + N G+ F+QGKI F Y+++ +T ITK + K+ IL
Sbjct: 49 KLGKITEIISGQSPQSKFYNKNQQGLPFYQGKIEFGNMYLKEPKTWTTQITKESIKDDIL 108
Query: 64 LCVRAPVGVVNITE-REICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQA 122
+ VRAPVG +NI +ICIGRGL ++ K + Y+ + G F +
Sbjct: 109 MSVRAPVGSLNINRFDKICIGRGLAAIRSKAENVFIKYIYYFLLFNPELIVGTEGLIFSS 168
Query: 123 ISIELIKNILIPLPPSSEQKRIV 145
IS + I I IPLPP Q++I+
Sbjct: 169 ISRDQISKISIPLPPKEVQEQII 191
>gi|84489266|ref|YP_447498.1| hypothetical protein Msp_0455 [Methanosphaera stadtmanae DSM 3091]
gi|84372585|gb|ABC56855.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091]
Length = 180
Score = 93.2 bits (230), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 5/145 (3%)
Query: 4 RLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAIL 63
+L +I ITMGQSP S + + N + QG Y+ YT ITKIA K IL
Sbjct: 23 KLSQINKITMGQSPSSKYYTKNQNDTILVQGNQDIANNYV-IPRIYTSKITKIAKKGEIL 81
Query: 64 LCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQ--CQKDTFEQKSTGTTFQ 121
L VRAPVG + IT+ ++CIGRG+CS+ P I + F F++L K+ + + G+TF+
Sbjct: 82 LTVRAPVGDIVITQYDVCIGRGVCSIKPS--ISTGFMFFYLAKLNSKNQWNKYIQGSTFE 139
Query: 122 AISIELIKNILIPLPPSSEQKRIVA 146
+I+ + IK++ I +P SS+++ +A
Sbjct: 140 SINSKDIKSMKIKIPKSSKEQEKIA 164
>gi|15669726|ref|NP_248539.1| type I restriction-modification enzyme, S subunit, putative
[Methanocaldococcus jannaschii DSM 2661]
gi|2496187|sp|Q58926|Y1531_METJA Uncharacterized protein MJ1531
gi|1592162|gb|AAB99552.1| type I restriction-modification enzyme, S subunit, putative
[Methanocaldococcus jannaschii DSM 2661]
Length = 425
Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/142 (39%), Positives = 78/142 (54%), Gaps = 2/142 (1%)
Query: 11 ITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPV 70
I MGQSP SS + +G+ F QGK F Y YT K+ IL+ VRAPV
Sbjct: 251 IIMGQSPPSSSYNKEGEGVPFLQGKAEFGNIYPNPVL-YTNKPLKVVDDEDILISVRAPV 309
Query: 71 GVVNITEREICIGRGLCSVYP-KYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAISIELIK 129
G VNI ++CIGRGL + K ++ + F FY+L K E G F+AI+ + ++
Sbjct: 310 GDVNIAPFKLCIGRGLAGIKSNKEKVDNFFVFYYLSYIKPKIEYLGGGAVFKAITKKDLE 369
Query: 130 NILIPLPPSSEQKRIVAKIEEL 151
+I IPLPP EQK I +++ +
Sbjct: 370 SIKIPLPPLEEQKAIAKRLKAI 391
>gi|150388684|ref|YP_001318733.1| restriction modification system DNA specificity domain
[Alkaliphilus metalliredigens QYMF]
gi|149948546|gb|ABR47074.1| restriction modification system DNA specificity domain
[Alkaliphilus metalliredigens QYMF]
Length = 467
Score = 91.3 bits (225), Expect = 2e-17, Method: Composition-based stats.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 21/177 (11%)
Query: 1 MWCRLGEICSITMGQSPESSFISNNSDG---------------MEFHQGKIHFTEKYIQK 45
+W RLG + +I G +P S I +G + GK + TE ++K
Sbjct: 33 VWTRLGNVTTIIGGGTPPSRVIEYYENGSIPWISPVDLSGYTDIYISHGKKNITELGLKK 92
Query: 46 ANNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQ 105
++ ++ P+N +LL RAP+G V I + E+C +G S P ++ +++L+
Sbjct: 93 SS------ARLLPENTVLLSSRAPIGYVAIADNELCTNQGFKSFLPSPCYLPKYLYFYLK 146
Query: 106 CQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
K E ++GTTF +S + PLPP +EQ+RIV +IE LF +L+ A++
Sbjct: 147 SSKKLLEAYASGTTFLELSGRKAAIVEFPLPPLAEQQRIVDRIESLFEKLNQAKALI 203
>gi|134097471|ref|YP_001103132.1| putative restriction modification system DNA specificity domain
[Saccharopolyspora erythraea NRRL 2338]
gi|133910094|emb|CAM00207.1| putative restriction modification system DNA specificity domain
[Saccharopolyspora erythraea NRRL 2338]
Length = 411
Score = 87.0 bits (214), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 86/158 (54%), Gaps = 4/158 (2%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKY-IQKANNYTFNITKIAPKNAIL 63
L + I GQ+P S+ +S+ DG+ F QG F + + + T +KIA +L
Sbjct: 6 LKYVAYIRPGQAPPSTEVSDLIDGLPFLQGNAEFQAAHPVPRLQCDT--ASKIAKCGDVL 63
Query: 64 LCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAI 123
L VRAPVG +NI +RE IGRGLCSV + F ++WL + + STGTT++A+
Sbjct: 64 LSVRAPVGALNIADREYGIGRGLCSV-SATGCDARFLWWWLHSAGERLDAVSTGTTYRAV 122
Query: 124 SIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAV 161
+ E + + P EQ+RI ++ ++D ++A+
Sbjct: 123 TGEDVGMLPFPRVSLEEQRRIADFLDAETTRIDKLSAL 160
>gi|121541757|ref|ZP_01673502.1| Restriction endonuclease S subunits-like [Candidatus Desulfococcus
oleovorans Hxd3]
gi|121518303|gb|EAX55166.1| Restriction endonuclease S subunits-like [Candidatus Desulfococcus
oleovorans Hxd3]
Length = 385
Score = 85.5 bits (210), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/162 (31%), Positives = 80/162 (49%), Gaps = 11/162 (6%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGK-----IHFTEKYIQKANNYTFNITKIAPK 59
L ++C + MGQ+P+ + N+ G G IH + K +T + TK
Sbjct: 14 LNQLCLVVMGQAPKGDTYNENTLGTPLIAGAADLGLIHPSPK------KWTTSPTKTGKA 67
Query: 60 NAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTT 119
I+LCVRA +G +N + + C GRG+C + EF ++WL KD G T
Sbjct: 68 GDIILCVRATIGDLNWADSKYCYGRGVCGLRIIEGHDPEFLWFWLMACKDHLLSLGRGAT 127
Query: 120 FQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAV 161
F+ IS I N+ +P EQ+RIVA+I+E +++ I +
Sbjct: 128 FKQISKTDIANLPVPALAVDEQRRIVARIKECMERVEEIEGL 169
>gi|21228395|ref|NP_634317.1| type I restriction-modification system specificity subunit
[Methanosarcina mazei Go1]
gi|20906868|gb|AAM31989.1| type I restriction-modification system specificity subunit
[Methanosarcina mazei Go1]
Length = 406
Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 91/156 (58%), Gaps = 8/156 (5%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIH-FTEKYIQKANNYTFNITKIAPKNAIL 63
LG++ ITMGQSP S+ ++ +G+ QG F K I++ +T IT+ I+
Sbjct: 231 LGDVAEITMGQSPSSANYNSKGEGLPLIQGNADIFNRKTIKRV--FTTEITRRGKCGDII 288
Query: 64 LCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAI 123
+ VRAPVG V+ E +IC+GRG+C++ R + F ++ L ++ T+ + S G+TF ++
Sbjct: 289 MSVRAPVGEVSRAEFDICLGRGVCAI----RYSNNFLYHTLISKESTWAKLSKGSTFDSV 344
Query: 124 SIELIKNILIPLPP-SSEQKRIVAKIEELFAQLDSI 158
+ +K I LP S+EQ+ I + ++ A++ ++
Sbjct: 345 NSADVKAFDIELPTDSAEQEAIATILSDMDAEITAL 380
>gi|52082594|ref|YP_081385.1| HsdS [Bacillus licheniformis ATCC 14580]
gi|52787992|ref|YP_093821.1| hypothetical protein BLi04316 [Bacillus licheniformis ATCC 14580]
gi|52005805|gb|AAU25747.1| HsdS [Bacillus licheniformis ATCC 14580]
gi|52350494|gb|AAU43128.1| putative protein [Bacillus licheniformis DSM 13]
Length = 387
Score = 85.1 bits (209), Expect = 1e-15, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
L +I ITMGQSP + ++ DG+ G FT KY +T TK+ ILL
Sbjct: 14 LSDIADITMGQSPPGNSYNDIKDGIGLINGPTEFTNKY-PVVKQWTSKPTKLCKAGDILL 72
Query: 65 CVR-APVGVVNITEREICIGRGLCSVYPKY-RIQSEFWFYWLQCQKDTFEQKSTGTTFQA 122
CVR + G +NI + E CIGRG+ S+ K + ++ F +Y L + + QK+ G+TF
Sbjct: 73 CVRGSSTGRMNIADDEYCIGRGVASIRAKKDKAETSFIYYTLNYKVNQLLQKTAGSTFPN 132
Query: 123 ISIELIKNILIPLPPSSEQKRIVA 146
+S IK++++ +P +EQ++I +
Sbjct: 133 LSSNEIKDMIVGIPLFAEQQKIAS 156
>gi|91772548|ref|YP_565240.1| restriction modification system DNA specificity subunit
[Methanococcoides burtonii DSM 6242]
gi|91711563|gb|ABE51490.1| restriction modification system DNA specificity subunit
[Methanococcoides burtonii DSM 6242]
Length = 511
Score = 84.7 bits (208), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 76/131 (58%), Gaps = 6/131 (4%)
Query: 38 FTEKYIQKANNYTFNI------TKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYP 91
++EKYI K ++ ++ PK ++L RAP+G + I E+C +G ++ P
Sbjct: 55 YSEKYIYKGRKSITHLGLKNSSARLIPKGSVLFSSRAPIGYIAIAGNELCTNQGFKTLIP 114
Query: 92 KYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEEL 151
+ +F +Y+L+ K E +++GTTF+ +S + + + +PP EQ+ IV+KIE+L
Sbjct: 115 SEALNRDFLYYYLKSIKQLAEGRASGTTFKELSGKAFAELPLCVPPLPEQRAIVSKIEQL 174
Query: 152 FAQLDSITAVL 162
F++LD+ A L
Sbjct: 175 FSELDNGIANL 185
>gi|42779918|ref|NP_977165.1| type I restriction-modification enzyme, S subunit, putative
[Bacillus cereus ATCC 10987]
gi|42735836|gb|AAS39773.1| type I restriction-modification enzyme, S subunit, putative
[Bacillus cereus ATCC 10987]
Length = 476
Score = 83.2 bits (204), Expect = 4e-15, Method: Composition-based stats.
Identities = 50/177 (28%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 1 MWCRLGEICSITMGQSPESSFISNNSDG---------------MEFHQGKIHFTEKYIQK 45
+W G I + G +P+S DG M +GK + TE + K
Sbjct: 26 IWTWTGAIAEVISGGTPKSKVEEYYKDGTISWITPADLSGYQDMYISKGKRNITELGLNK 85
Query: 46 ANNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQ 105
++ K+ P N +LL RAP+G V I +++C +G S P ++ +++L+
Sbjct: 86 SS------AKMLPINTVLLSSRAPIGYVAIAAKDLCTNQGFKSFAPSNAYYPKYLYWYLK 139
Query: 106 CQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
K E ++G+TF+ +S K I IPLPP +EQKR+ K+E L +++ ++
Sbjct: 140 FSKYYMESMASGSTFKELSSNKSKEIPIPLPPINEQKRVSEKVERLLNKVEEAKTLI 196
>gi|148544100|ref|YP_001271470.1| restriction modification system DNA specificity domain
[Lactobacillus reuteri F275]
gi|148531134|gb|ABQ83133.1| restriction modification system DNA specificity domain
[Lactobacillus reuteri F275]
Length = 195
Score = 81.6 bits (200), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 4 RLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAIL 63
+L ++ I MGQSP+S F + N +G F QG F E Y Q + +T + + A IL
Sbjct: 7 QLKDVADIVMGQSPKSVFYNTNGNGTPFLQGVRTFGENYPQ-IDTWTTSYNRKAKSGEIL 65
Query: 64 LCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAI 123
VRAPVG VN +++ +GRGL ++ K E+ +Y + + +TGT F +I
Sbjct: 66 FSVRAPVGRVNWANQDLAVGRGLAALKIKSGYSKEYLYYLFKKIGGQLDSLATGTVFTSI 125
Query: 124 SIELIKNILIPLPPS-SEQKRIVAKIEELFAQLD 156
+ + ++ I + +P + S+Q++I ++++ +++
Sbjct: 126 NKKELEAIELKIPVNLSDQEKIADYLQKIDQEIE 159
>gi|31983512|ref|NP_858124.1| putative type i restriction enzyme hsds subunit [Lactobacillus
delbrueckii subsp. lactis]
gi|18077746|emb|CAD13349.1| putative Type I restriction enzyme hsdS subunit [Lactobacillus
delbrueckii subsp. lactis]
Length = 396
Score = 81.6 bits (200), Expect = 1e-14, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 8/144 (5%)
Query: 3 CRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAI 62
C+LG++ ITMGQSP S ++N QG + + +T ITKIA K +
Sbjct: 23 CKLGDVAKITMGQSPNSKNYTDNPKDHILVQGNADMKDGQVH-PRIWTTEITKIADKGDL 81
Query: 63 LLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTF 120
+L VRAPVG + T ++ IGRG+ ++ +EF F L+ K + + STG+TF
Sbjct: 82 ILSVRAPVGDIGKTSYDVVIGRGVAAIK-----GNEFIFQLLKRMKTVGYWTKYSTGSTF 136
Query: 121 QAISIELIKNILIPLPPSSEQKRI 144
++I+ I N +I LP EQ ++
Sbjct: 137 ESINSLEINNAVINLPKEHEQNKV 160
>gi|55820774|ref|YP_139216.1| type I restriction-modification system specificty subunit
[Streptococcus thermophilus LMG 18311]
gi|55822677|ref|YP_141118.1| type I restriction-modification system specificty subunit
[Streptococcus thermophilus CNRZ1066]
gi|55736759|gb|AAV60401.1| type I restriction-modification system specificty subunit
[Streptococcus thermophilus LMG 18311]
gi|55738662|gb|AAV62303.1| type I restriction-modification system specificty subunit
[Streptococcus thermophilus CNRZ1066]
Length = 406
Score = 80.9 bits (198), Expect = 2e-14, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 12/156 (7%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
L E+ +ITMGQSP+S ++N + QG +K + +T +TK+A I+L
Sbjct: 237 LSEVTNITMGQSPKSENYTDNPNDYILVQGNADIKDKQVV-PRLWTTEVTKMAEIGDIIL 295
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQA 122
VRAPVG + T+ + IGRG+ ++ ++F FY L+ K T + + STG+TF++
Sbjct: 296 TVRAPVGDIGKTDYNVVIGRGVAAIK-----GNDFIFYTLEKMKMTGFWNKFSTGSTFES 350
Query: 123 ISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
IS IK +I +P EQK I A F+ LD++
Sbjct: 351 ISSNDIKEAIIQIPTLEEQKAIGA----YFSNLDNL 382
>gi|89210922|ref|ZP_01189304.1| Restriction modification system DNA specificity domain
[Halothermothrix orenii H 168]
gi|89159468|gb|EAR79134.1| Restriction modification system DNA specificity domain
[Halothermothrix orenii H 168]
Length = 565
Score = 80.5 bits (197), Expect = 3e-14, Method: Composition-based stats.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 15/173 (8%)
Query: 2 WCRLGEICSITMGQSPES---SFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIA- 57
W RLG I I G +P++ ++ N + KYI + NITK+
Sbjct: 88 WVRLGNIGRIVGGGTPKTKVHAYWENGNIAWLTPADLNGLKSKYISRGRR---NITKLGL 144
Query: 58 --------PKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKD 109
PK ++L RAP+G V I + ++ +G S P +++ +Y+L
Sbjct: 145 QNSSAKLLPKGSVLFSSRAPIGYVAIAQNDLATNQGFKSCVPYIMDMNQYIYYFLMYDAK 204
Query: 110 TFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
++GTTF+ +S + + N + PLPP +EQKRIV K++EL D + L
Sbjct: 205 RINDNASGTTFKEVSGKEVANFIFPLPPLNEQKRIVNKLDELMTFCDQLEVSL 257
>gi|111222733|ref|YP_713527.1| Type I restriction modification enzyme protein S [Frankia alni
ACN14a]
gi|111150265|emb|CAJ61962.1| Type I restriction modification enzyme protein S [Frankia alni
ACN14a]
Length = 399
Score = 79.0 bits (193), Expect = 9e-14, Method: Composition-based stats.
Identities = 52/173 (30%), Positives = 81/173 (46%), Gaps = 29/173 (16%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHF----------------TEKYIQKANN 48
LGE C I G +P+++ E+ G+I + T + I +A
Sbjct: 9 LGEFCEIISGATPKTA-------SEEYWGGEIPWATPRDLGSLNSKFLASTSRAITEAGL 61
Query: 49 YTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKY-RIQSEFWFYWLQCQ 107
+ T + P ++LL RAP+G V I R + +G S+ P R + ++WL+CQ
Sbjct: 62 RSC-ATHVLPAGSVLLTSRAPIGSVAINARPMATNQGFKSLVPDTSRALPGYLYHWLRCQ 120
Query: 108 KDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITA 160
+ + G TF+ +S I +PLPP SEQKR IE++ Q D+I A
Sbjct: 121 RSRLQSLGNGATFKELSKSATARIAVPLPPLSEQKR----IEQMLDQADTIRA 169
>gi|77415025|ref|ZP_00791100.1| Type I restriction modification DNA specificity domain protein
[Streptococcus agalactiae 515]
gi|77158925|gb|EAO70161.1| Type I restriction modification DNA specificity domain protein
[Streptococcus agalactiae 515]
Length = 385
Score = 78.6 bits (192), Expect = 1e-13, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 88/170 (51%), Gaps = 22/170 (12%)
Query: 2 WCRLGEICSITMGQSPESS----------FISNNSDGME-----FHQGKIHFTEKYIQKA 46
W +L I SIT G +P+SS +I+ G + F + TE +QK+
Sbjct: 90 WVKLRNIGSITSGGTPKSSEPSYYGGNITWITPADMGKQQNNKFFAKSSKKITELGLQKS 149
Query: 47 NNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQC 106
+ ++ KN+I+ RAP+G +NI + +G S+ P + F ++ LQ
Sbjct: 150 S------AQLISKNSIVYSSRAPIGHINIVTEDYTTNQGCKSITP-LLVDLIFLYWLLQF 202
Query: 107 QKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLD 156
+ +S+GTTF+ IS + L+PLPP +EQKRIVA+IE+ A++D
Sbjct: 203 RTKDIILRSSGTTFKEISASGFGDTLLPLPPLAEQKRIVAQIEKALAKVD 252
>gi|119491619|ref|ZP_01623491.1| hypothetical protein L8106_03529 [Lyngbya sp. PCC 8106]
gi|119453348|gb|EAW34512.1| hypothetical protein L8106_03529 [Lyngbya sp. PCC 8106]
Length = 433
Score = 77.4 bits (189), Expect = 2e-13, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 4 RLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTF--NITKIAPKNA 61
+L I + MGQSP+S+ + G+ F QG F I N + K A K+
Sbjct: 29 KLKFIADLIMGQSPDSTDYNYEEIGVPFLQGTAEFG---IINPNPRLSCESAKKYARKDD 85
Query: 62 ILLCVRAPVGVVNITEREICIGRGLCSVYPKYRI-QSEFWFYWLQCQKDTFEQKSTGTTF 120
+LL VRAPVG +N+ ++ IGRGLC++ PK + F Y+L+ K +TG+ +
Sbjct: 86 LLLSVRAPVGEINVADQVYGIGRGLCAIRPKINVFNKTFTRYFLEIGKVELVSGATGSIY 145
Query: 121 QAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
A+++ + N+ PP EQK I ++ ++D++
Sbjct: 146 DAVTVNQVANLQCLTPPLKEQKLIATFLDRETTRIDTL 183
>gi|146319105|ref|YP_001198817.1| type I restriction-modification system, S subunit [Streptococcus
suis 05ZYH33]
gi|145689911|gb|ABP90417.1| type I restriction-modification system, S subunit [Streptococcus
suis 05ZYH33]
Length = 522
Score = 75.9 bits (185), Expect = 7e-13, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 22/170 (12%)
Query: 2 WCRLGEICSITMGQSPESS----------FISNNSDGME-----FHQGKIHFTEKYIQKA 46
W RL + IT G +P+SS +I+ G + F TE +QK+
Sbjct: 90 WVRLRNLGVITSGGTPKSSESTYYDGNITWITPADMGKQQNNKLFATSSKKITELGVQKS 149
Query: 47 NNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQC 106
+ ++ KN+I+ RAP+G +NI + +G SV P + +F ++ LQ
Sbjct: 150 S------AQLISKNSIVYSSRAPIGHINIVNYDFTTNQGCKSVTP-ILVNLDFMYWILQF 202
Query: 107 QKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLD 156
+ +S+GTTF+ IS + L+PLPP +EQKRIVA IE Q++
Sbjct: 203 RTKDIILRSSGTTFKEISASGFGDTLLPLPPLAEQKRIVAHIERALEQVE 252
>gi|154173663|ref|YP_001408732.1| type I restriction-modification system S subunit [Campylobacter
curvus 525.92]
gi|153792995|gb|EAT99440.2| type I restriction-modification system S subunit [Campylobacter
curvus 525.92]
Length = 323
Score = 75.5 bits (184), Expect = 9e-13, Method: Composition-based stats.
Identities = 61/169 (36%), Positives = 82/169 (48%), Gaps = 20/169 (11%)
Query: 2 WCRLGEICSITMG----QSPESSFISNNSDGMEF-------HQGKIHFTEKYIQKANNYT 50
W RLGEIC I G Q+ + + +N DG + G I + N
Sbjct: 158 WVRLGEICQIYTGDSINQTQKLTKYTNLEDGRCYIATKDVDFDGSIDYENGVKIPFNESR 217
Query: 51 FNITKIAPKNAILLCVRAPVG--VVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQK 108
F KIAPKN++LLCV + + ++C G LC P I+ +F +Y+LQ Q
Sbjct: 218 F---KIAPKNSVLLCVEGGSAGKKIGYLDCDVCFGNKLCCFNP-LLIEPKFIYYYLQSQI 273
Query: 109 --DTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQL 155
+F QK +G IS+ IK I+I +PP EQKRIV KIE L L
Sbjct: 274 FIYSFMQKMSGI-ISGISLNSIKTIVIAIPPLPEQKRIVEKIELLLPLL 321
>gi|156864174|gb|EDO57605.1| hypothetical protein CLOL250_01695 [Clostridium sp. L2-50]
Length = 372
Score = 75.5 bits (184), Expect = 9e-13, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
L +I IT+GQSP S + + G F QG+ F ++ YT ++A N L+
Sbjct: 190 LSDIADITIGQSPSGSSYNEDGTGTIFFQGRAEFGFRF-PSVRLYTTEPKRMARSNDTLM 248
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQS--EFWFYWLQCQKDTFEQKSTGTTFQA 122
VRAPVG +N+ + CIGRGL +++ K QS + + L+ Q D F + GT F +
Sbjct: 249 SVRAPVGDLNVAHTDCCIGRGLAAIHSKSNHQSFVLYTMFSLKKQLDVFNGE--GTVFGS 306
Query: 123 ISIELIKNILIPLPPS---SEQKRIVAKIE 149
I+ + ++ I +P E +RIVA ++
Sbjct: 307 INRNSLNDMPILIPSDDILDEFERIVAPMD 336
>gi|156864459|gb|EDO57890.1| hypothetical protein CLOL250_01430 [Clostridium sp. L2-50]
Length = 215
Score = 75.5 bits (184), Expect = 9e-13, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
L +I IT+GQSP S + + G F QG+ F ++ YT ++A N L+
Sbjct: 33 LSDIADITIGQSPSGSSYNEDGTGTIFFQGRAEFGFRF-PSVRLYTTEPKRMARSNDTLM 91
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQS--EFWFYWLQCQKDTFEQKSTGTTFQA 122
VRAPVG +N+ + CIGRGL +++ K QS + + L+ Q D F + GT F +
Sbjct: 92 SVRAPVGDLNVAHTDCCIGRGLAAIHSKSNHQSFVLYTMFSLKKQLDVFNGE--GTVFGS 149
Query: 123 ISIELIKNILIPLPPS---SEQKRIVAKIE 149
I+ + ++ I +P E +RIVA ++
Sbjct: 150 INRNSLNDMPILIPSDDILDEFERIVAPMD 179
>gi|146321309|ref|YP_001201020.1| type I restriction-modification system, S subunit [Streptococcus
suis 98HAH33]
gi|145692115|gb|ABP92620.1| type I restriction-modification system, S subunit [Streptococcus
suis 98HAH33]
Length = 284
Score = 75.1 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/170 (31%), Positives = 84/170 (49%), Gaps = 22/170 (12%)
Query: 2 WCRLGEICSITMGQSPESS----------FISNNSDGME-----FHQGKIHFTEKYIQKA 46
W RL + IT G +P+SS +I+ G + F TE +QK+
Sbjct: 90 WVRLRNLGVITSGGTPKSSESTYYDGNITWITPADMGKQQNDKVFATSSKKITELGVQKS 149
Query: 47 NNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQC 106
+ ++ KN+I+ RAP+G +NI + +G SV P + +F ++ LQ
Sbjct: 150 S------AQLISKNSIVYSSRAPIGHINIVNYDFTTNQGCKSVTP-ILVNLDFMYWILQF 202
Query: 107 QKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLD 156
+ +S+GTTF+ IS + L+PLPP +EQKRIVA IE Q++
Sbjct: 203 RTKDIILRSSGTTFKEISASGFGDTLLPLPPLAEQKRIVAHIERALEQVE 252
>gi|60681333|ref|YP_211477.1| putative type IC restriction-modification system specificity
subunit, partial [Bacteroides fragilis NCTC 9343]
gi|60492767|emb|CAH07541.1| putative type IC restriction-modification system specificity
subunit, partial [Bacteroides fragilis NCTC 9343]
Length = 376
Score = 75.1 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 79/156 (50%), Gaps = 6/156 (3%)
Query: 2 WCRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNA 61
+ +GE+C + MGQSP S + +G+ QG + E + +T +ITK
Sbjct: 202 YTSIGEMCDVVMGQSPSSVAYNYTKNGLPLIQGNLDIFEG-VTSPRMWTSDITKQCDIGD 260
Query: 62 ILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQ 121
I+L VRAPVG V + C+GRG+C++ K SE+ + +L K + G+TF
Sbjct: 261 IILTVRAPVGDVAKSNMIACVGRGVCAIKVKESGCSEYVYQYLLYFKAKWGSIEQGSTFS 320
Query: 122 AISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDS 157
AIS I NI IP+ ++ IVA L A DS
Sbjct: 321 AISRNDILNINIPV---ITKRLIVA--SHLLALFDS 351
>gi|71904273|ref|YP_281076.1| type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS6180]
gi|71803368|gb|AAX72721.1| type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS6180]
Length = 395
Score = 74.7 bits (182), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LG+I ITMGQSP S + N QG Y+ +T ITK A K I+L
Sbjct: 226 LGDIVQITMGQSPSSQNYTTNPSDYILVQGNADIKNGYV-FPRVWTTQITKQADKGDIIL 284
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQA 122
VRAPVG V T + IGRG+ ++ +EF F L+ K+ +++ STG+TF +
Sbjct: 285 SVRAPVGDVGKTNYHVIIGRGVAAIK-----GNEFIFQILKYLKEIGYWKRISTGSTFDS 339
Query: 123 ISIELIKNILIPLPPSSEQKRI----------VAKIEELFAQLDSITAVL 162
IS IK I +P SEQ+ I +A+ EE +L ++ L
Sbjct: 340 ISSSDIKYAKIQIPSLSEQEAIGNFFQTLDQQIAQSEEKLTELKALKQTL 389
>gi|19746826|ref|NP_607962.1| putative specificity determinant HsdS [Streptococcus pyogenes
MGAS8232]
gi|19749064|gb|AAL98461.1| putative specificity determinant HsdS [Streptococcus pyogenes
MGAS8232]
Length = 395
Score = 74.3 bits (181), Expect = 2e-12, Method: Composition-based stats.
Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LG+I ITMGQSP S + N QG Y+ +T ITK A K I+L
Sbjct: 226 LGDIVQITMGQSPSSQNYTTNPSDYILVQGNADIKNGYV-FPRVWTTQITKQADKGDIIL 284
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQA 122
VRAPVG V T + IGRG+ ++ +EF F L+ K+ +++ STG+TF +
Sbjct: 285 SVRAPVGDVGKTNYHVIIGRGVAAIK-----GNEFIFQILKYLKEIGYWKRISTGSTFDS 339
Query: 123 ISIELIKNILIPLPPSSEQKRI----------VAKIEELFAQLDSITAVL 162
IS IK I +P SEQ+ I +A+ EE +L ++ L
Sbjct: 340 ISSSDIKYAKIQIPSLSEQEAIGNFFQTLDQQIAQSEEKLTELKALKQTL 389
>gi|139474405|ref|YP_001129121.1| type I restriction-modification system S protein [Streptococcus
pyogenes str. Manfredo]
gi|134272652|emb|CAM30919.1| type I restriction-modification system S protein [Streptococcus
pyogenes str. Manfredo]
Length = 391
Score = 73.9 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LG+I ITMGQSP S + N QG Y+ +T ITK A K I+L
Sbjct: 222 LGDIVQITMGQSPSSQNYTTNPSDYILVQGNADIKNGYV-FPRVWTTQITKQADKGDIIL 280
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQA 122
VRAPVG V T + IGRG+ ++ +EF F L+ K+ +++ STG+TF +
Sbjct: 281 SVRAPVGDVGKTNYHVIIGRGVAAIK-----GNEFIFQILKYLKEIGYWKRISTGSTFDS 335
Query: 123 ISIELIKNILIPLPPSSEQKRI----------VAKIEELFAQLDSITAVL 162
IS IK I +P SEQ+ I +A+ EE +L ++ L
Sbjct: 336 ISSSDIKYAKIQIPSLSEQEAIGNFFQTLDQQIAQSEEKLTELKALKQTL 385
>gi|94989255|ref|YP_597356.1| type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS9429]
gi|94542763|gb|ABF32812.1| type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS9429]
Length = 399
Score = 73.9 bits (180), Expect = 3e-12, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LG+I ITMGQSP S + N QG YI +T ITK A K I+L
Sbjct: 23 LGDIVQITMGQSPSSQNYTTNPSDYILVQGNADIKNGYI-FPRVWTTQITKQADKGDIIL 81
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQA 122
VRAPVG V T + IGRG+ ++ +EF F L+ K+ +++ STG+TF +
Sbjct: 82 SVRAPVGDVGKTNYHVIIGRGVAAIK-----GNEFIFQILKYLKEIGYWKRISTGSTFDS 136
Query: 123 ISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
IS IK I +P EQ+ I ELF +D +
Sbjct: 137 ISSSDIKYAKIQIPSLPEQE----AIGELFQTVDQL 168
>gi|15675718|ref|NP_269892.1| putative type I site-specific deoxyribonuclease [Streptococcus
pyogenes M1 GAS]
gi|71911435|ref|YP_282985.1| type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS5005]
gi|13622936|gb|AAK34613.1| putative type I site-specific deoxyribonuclease [Streptococcus
pyogenes M1 GAS]
gi|71854217|gb|AAZ52240.1| type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS5005]
Length = 399
Score = 73.6 bits (179), Expect = 4e-12, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LG+I ITMGQSP S + N QG Y+ +T ITK A K I+L
Sbjct: 23 LGDIVQITMGQSPSSQNYTTNPSDYILVQGNADIKNGYV-FPRVWTTQITKQADKGDIIL 81
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQA 122
VRAPVG V T + IGRG+ ++ +EF F L+ K+ +++ STG+TF +
Sbjct: 82 SVRAPVGDVGKTNYHVIIGRGVAAIK-----GNEFIFQILKYLKEIGYWKRISTGSTFDS 136
Query: 123 ISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
IS IK I +P EQ+ I ELF +D +
Sbjct: 137 ISSSDIKYAKIQIPSLPEQE----AIGELFQMVDQL 168
>gi|21911179|ref|NP_665447.1| putative type I site-specific deoxyribonuclease hsdS subunit
[Streptococcus pyogenes MGAS315]
gi|28896555|ref|NP_802905.1| putative type I site-specific deoxyribonuclease [Streptococcus
pyogenes SSI-1]
gi|94995073|ref|YP_603171.1| Type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS10750]
gi|21905391|gb|AAM80250.1| putative type I site-specific deoxyribonuclease hsdS subunit
[Streptococcus pyogenes MGAS315]
gi|28811809|dbj|BAC64738.1| putative type I site-specific deoxyribonuclease [Streptococcus
pyogenes SSI-1]
gi|94548581|gb|ABF38627.1| Type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS10750]
Length = 391
Score = 73.6 bits (179), Expect = 4e-12, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LG+I ITMGQSP S + N QG Y+ +T ITK A K I+L
Sbjct: 23 LGDIVQITMGQSPSSQNYTTNPSDYILVQGNADIKNGYV-FPRVWTTQITKQADKGDIIL 81
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQA 122
VRAPVG V T + IGRG+ ++ +EF F L+ K+ +++ STG+TF +
Sbjct: 82 SVRAPVGDVGKTNYHVIIGRGVAAIK-----GNEFIFQILKYLKEIGYWKRISTGSTFDS 136
Query: 123 ISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
IS IK I +P EQ+ I ELF +D +
Sbjct: 137 ISSSNIKYAKIQIPSLPEQE----AIGELFQTVDQL 168
>gi|94993143|ref|YP_601242.1| Type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS2096]
gi|94546651|gb|ABF36698.1| Type I restriction-modification system specificity subunit
[Streptococcus pyogenes MGAS2096]
Length = 399
Score = 73.2 bits (178), Expect = 4e-12, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LG+I ITMGQSP S + N QG Y+ +T ITK A K I+L
Sbjct: 23 LGDIVQITMGQSPSSQNYTTNPSDYILVQGNADIKNGYV-FPRVWTTQITKQADKGDIIL 81
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQA 122
VRAPVG V T + IGRG+ ++ +EF F L+ K+ +++ STG+TF +
Sbjct: 82 SVRAPVGDVGKTNYHVIIGRGVAAIK-----GNEFIFQILKYLKEIGYWKRISTGSTFDS 136
Query: 123 ISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
IS IK I +P EQ+ I ELF +D +
Sbjct: 137 ISSSDIKYAKIQIPSLPEQE----AIGELFQTVDQL 168
>gi|91213998|ref|YP_543984.1| HsdS, type I site-specific deoxyribonuclease [Escherichia coli
UTI89]
gi|117626660|ref|YP_859983.1| HsdS, type I site-specific deoxyribonuclease [Escherichia coli APEC
O1]
gi|91075572|gb|ABE10453.1| HsdS, type I site-specific deoxyribonuclease [Escherichia coli
UTI89]
gi|115515784|gb|ABJ03859.1| HsdS, type I site-specific deoxyribonuclease [Escherichia coli APEC
O1]
Length = 455
Score = 72.0 bits (175), Expect = 9e-12, Method: Composition-based stats.
Identities = 53/169 (31%), Positives = 80/169 (47%), Gaps = 11/169 (6%)
Query: 5 LGEICSITMGQSPESSFISN---NSDGMEFHQGK--IHFTEKYIQKANN------YTFNI 53
+G+I + G +P+S N + +G+ + + EKYI Y+
Sbjct: 15 IGDIADVISGGTPKSGVAENFAPSGEGVAWLTPADLSGYKEKYISHGARDLTTLGYSSCS 74
Query: 54 TKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQ 113
K+ PK IL RAP+G V I EI +G S I ++ +Y+L+ + E+
Sbjct: 75 AKLMPKGTILFSSRAPIGYVAIAANEIATNQGFKSFAFPSDIFPDYAYYFLRNIRHIAEE 134
Query: 114 KSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
TGTTF+ IS K + L P +EQK I K++ L AQ+DS A L
Sbjct: 135 MGTGTTFKEISGSSAKTLPFVLVPFAEQKIIAEKLDTLLAQVDSTKARL 183
>gi|126090307|ref|YP_001041762.1| restriction modification system DNA specificity domain [Shewanella
baltica OS155]
gi|125999938|gb|ABN64007.1| restriction modification system DNA specificity domain [Shewanella
baltica OS155]
Length = 349
Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 12/156 (7%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LG + ITMGQSP +NNS+ QG ++ +T +TK A + A++
Sbjct: 180 LGSVTQITMGQSPSGENYTNNSNDFILVQGNADLKNGFVV-PRVWTSEVTKTATQGALIF 238
Query: 65 CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWL-QCQKDTFEQK-STGTTFQA 122
VRAPVG V T ++ +GRG+ ++ +EF F L + + D + K S G+TF A
Sbjct: 239 SVRAPVGEVGKTNYDVVLGRGVAAIN-----ANEFIFQQLKKLKSDNYWHKVSAGSTFDA 293
Query: 123 ISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
IS + + LI + SEQ I F +LD++
Sbjct: 294 ISSTELDSTLIWVSSDSEQ----TAIGNYFQKLDTL 325
>gi|71024881|ref|YP_263290.1| HsdS [Lactococcus lactis subsp. cremoris]
gi|70067198|dbj|BAE06236.1| HsdS [Lactococcus lactis subsp. cremoris]
Length = 388
Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 12/160 (7%)
Query: 4 RLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAIL 63
+LG+ I MGQSP S +++ + QG + +T +TK A K+ ++
Sbjct: 32 KLGDEVRIVMGQSPNSENYTDDPNDYILVQGNADMKNGRVL-PRVWTTQVTKQAEKDDLI 90
Query: 64 LCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQ 121
L VRAPVG + T ++ IGRG+ ++ +EF F L K + + STG+TF+
Sbjct: 91 LSVRAPVGDIGKTAYDVVIGRGVAAIK-----GNEFIFQNLGKMKSDGYWTRYSTGSTFE 145
Query: 122 AISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAV 161
+I+ IK +I +P EQ KI F QLD+ A+
Sbjct: 146 SINSTDIKEAIISVPAIEEQD----KIGSFFKQLDNTIAL 181
>gi|32455448|ref|NP_862562.1| HsdS [Lactococcus lactis]
gi|14251229|gb|AAK57812.1|U35629_2 HsdS [Lactococcus lactis]
Length = 387
Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/160 (32%), Positives = 81/160 (50%), Gaps = 12/160 (7%)
Query: 4 RLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAIL 63
+LG+ I MGQSP S +++ + QG + +T +TK A K+ ++
Sbjct: 32 KLGDEVRIVMGQSPNSENYTDDPNDYILVQGNADMKNGRVL-PRVWTTQVTKQAEKDDLI 90
Query: 64 LCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDT--FEQKSTGTTFQ 121
L VRAPVG + T ++ IGRG+ ++ +EF F L K + + STG+TF+
Sbjct: 91 LSVRAPVGDIGKTAYDVVIGRGVAAIK-----GNEFIFQNLGKMKSDGYWTRYSTGSTFE 145
Query: 122 AISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAV 161
+I+ IK +I +P EQ KI F QLD+ A+
Sbjct: 146 SINSTDIKEAIISVPAIEEQD----KIGSFFKQLDNTIAL 181
>gi|153808175|ref|ZP_01960843.1| hypothetical protein BACCAC_02461 [Bacteroides caccae ATCC 43185]
gi|149129078|gb|EDM20294.1| hypothetical protein BACCAC_02461 [Bacteroides caccae ATCC 43185]
Length = 473
Score = 68.9 bits (167), Expect = 8e-11, Method: Composition-based stats.
Identities = 57/170 (33%), Positives = 78/170 (45%), Gaps = 12/170 (7%)
Query: 2 WCRLGEICSITMGQSPESSFISNNSDG-------MEFHQGKI-HFTEKYIQKANNYTFNI 53
W LGEI G +P S + +G + + G I H E +KA N T
Sbjct: 307 WVTLGEIGKWQSGSTP-SRLNKDYYNGDIPWLKTGDLNDGYITHIPEYITEKALNET--S 363
Query: 54 TKIAPKNAILLCVR-APVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFE 112
K+ P +IL+ + A +G + I + C+ I+ EF FY+L + F
Sbjct: 364 VKLNPTGSILMAMYGATIGKLGILTYPATTNQACCACEIYTGIEKEFLFYFLLSHRADFI 423
Query: 113 QKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
+ G IS E I N IPLPPS EQKRIV + ++FAQLD I L
Sbjct: 424 KLGGGGAQPNISKEKIINTYIPLPPSEEQKRIVNAVNDVFAQLDVIMESL 473
>gi|15678961|ref|NP_276078.1| type I restriction modification system, subunit S
[Methanothermobacter thermautotrophicus str. Delta H]
gi|2622039|gb|AAB85439.1| type I restriction modification system, subunit S
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 407
Score = 67.4 bits (163), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 24 NNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIG 83
+N +G+ + T K +++ N + PK +IL+ RAPVG V + E
Sbjct: 57 SNLNGIMIADSERKVTVKALKRTN------LNLIPKLSILISTRAPVGYVALNTVECVFN 110
Query: 84 RGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKR 143
+G ++ PK + + ++ Y+L K + S G+TF+ ++ + ++ I +P+PP EQKR
Sbjct: 111 QGCKALVPKSHVDTRYFAYYLLINKKRLQDLSGGSTFKELNKKTLEKIYLPVPPLEEQKR 170
Query: 144 IVAKIEELFAQLDSI 158
I ++++ ++ +
Sbjct: 171 ISEILQDVDGAIEKV 185
>gi|2129238|pir||B64316 restriction modification system S chain homolog - Methanococcus
jannaschii
Length = 425
Score = 66.6 bits (161), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 56 IAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYR--IQSEFWFYWLQCQKDTFEQ 113
+ PK +I++ RAPVG V + E +G + PK + +EF+ Y+L+ +K+ E
Sbjct: 294 LIPKGSIIISTRAPVGYVAVLTVESTFNQGCKGLVPKNNDSVNTEFYAYYLKFKKNLLEN 353
Query: 114 KSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKI 148
S G+TF+ +S +++N IPLPP EQK+I AKI
Sbjct: 354 LSGGSTFKELSKSMLENFKIPLPPLEEQKQI-AKI 387
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 35 KIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYR 94
KI TE+ + +N + I PKN++L + +G I + E+ + + + PK
Sbjct: 70 KIKITEEGLNNSNAW------IVPKNSVLFAMYGSIGETAINKIEVATNQAILGIIPKDN 123
Query: 95 I-QSEFWFYWLQCQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQK---RIVAKIEE 150
I +SEF +Y L K+ + + TT + ++ +++K+ IPLPP EQK +I+ KI+E
Sbjct: 124 ILESEFLYYILAKNKNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQKQIAKILTKIDE 183
>gi|126007743|ref|ZP_01708319.1| hypothetical protein Faci_03001417 [Ferroplasma acidarmanus fer1]
Length = 420
Score = 66.2 bits (160), Expect = 6e-10, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 28/171 (16%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHF-TEKYIQKANNYTF------------ 51
LGEI G +P + +H G I + T K + K NN
Sbjct: 228 LGEIFKTITGTTPSTKVKD------YWHGGTIEWLTPKDLNKLNNTITLPPSERKVTEKA 281
Query: 52 ---NITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSE--FWFYWLQC 106
N I P+N+IL+ RAPVG V I +I +G + P R S F+ Y+L+
Sbjct: 282 LKENNLNILPENSILISTRAPVGYVGINNTKITFNQGCKGLVPLNRDVSFPFFYAYYLKS 341
Query: 107 QKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDS 157
+ STG+TF+ +S E + ++++PLPP EQ+ KI E+ + +D+
Sbjct: 342 KTTFLNSLSTGSTFKELSKEGLDDVVVPLPPLPEQQ----KIGEILSTVDN 388
>gi|99078515|ref|YP_611773.1| restriction modification system DNA specificity domain
[Silicibacter sp. TM1040]
gi|99035653|gb|ABF62511.1| type I restriction-modification system; S subunit [Silicibacter sp.
TM1040]
Length = 387
Score = 65.5 bits (158), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 5 LGEICSITMGQSPESSFISNNSDG-------MEFHQGKIHFTEKYIQKANNYTFNITKIA 57
LGE+ I G +P+ + + DG +F + T I +A + T++
Sbjct: 6 LGELVEIRGGGTPDKK-VPDYWDGDIPWASVKDFKSTSLASTIDRITQAG-VANSATQVI 63
Query: 58 PKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTG 117
P I++ R VG I E ++ I + L ++ P RI ++ + L T E ++TG
Sbjct: 64 PAGNIIVPTRMAVGKAAINEIDLAINQDLKALIPSQRIDRQYLLHALLANAKTLEDQATG 123
Query: 118 TTFQAISIELIKNILIPLPPSSEQKRIVAKIEE 150
T + I ++ ++++ IPLPP EQ+RI +++
Sbjct: 124 ATVKGIKLDALRSLQIPLPPLQEQRRIAGILDQ 156
>gi|15669898|ref|NP_247095.1| Type I restriction-modification enzyme, S subunit
[Methanocaldococcus jannaschii DSM 2661]
gi|115502461|sp|Q57594|T1S1_METJA Type I restriction enzyme MjaXIP specificity protein (S protein)
(S.MjaXIP)
gi|61680619|pdb|1YF2|A Chain A, Three-Dimensional Structure Of Dna Sequence Specificity
(S) Subunit Of A Type I Restriction-Modification Enzyme
And Its Functional Implications
gi|61680620|pdb|1YF2|B Chain B, Three-Dimensional Structure Of Dna Sequence Specificity
(S) Subunit Of A Type I Restriction-Modification Enzyme
And Its Functional Implications
Length = 425
Score = 65.1 bits (157), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
Query: 56 IAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYR--IQSEFWFYWLQCQKDTFEQ 113
+ PK +I++ RAPVG V + E +G ++ K + +EF+ Y+L+ +K+ E
Sbjct: 294 LIPKGSIIISTRAPVGYVAVLTVESTFNQGCKGLFQKNNDSVNTEFYAYYLKFKKNLLEN 353
Query: 114 KSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKI 148
S G+TF+ +S +++N IPLPP EQK+I AKI
Sbjct: 354 LSGGSTFKELSKSMLENFKIPLPPLEEQKQI-AKI 387
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 35 KIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYR 94
KI TE+ + +N + I PKN++L + +G I + E+ + + + PK
Sbjct: 70 KIKITEEGLNNSNAW------IVPKNSVLFAMYGSIGETAINKIEVATNQAILGIIPKDN 123
Query: 95 I-QSEFWFYWLQCQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQK---RIVAKIEE 150
I +SEF +Y L K+ + + TT + ++ +++K+ IPLPP EQK +I+ KI+E
Sbjct: 124 ILESEFLYYILAKNKNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQKQIAKILTKIDE 183
>gi|15611482|ref|NP_223133.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
gi|4154940|gb|AAD05986.1| TYPE I RESTRICTION ENZYME (SPECIFICITY SUBUNIT) [Helicobacter
pylori J99]
Length = 409
Score = 64.7 bits (156), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 53/99 (53%)
Query: 56 IAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKS 115
+ PK+AIL RAP+G V I E+ +C +G S+ P +I EF +Y L+ KD
Sbjct: 68 LLPKHAILFSSRAPIGYVAIAEKRLCTNQGFKSIIPNKKIYFEFLYYLLKYYKDNISNIG 127
Query: 116 TGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQ 154
GTTF+ +S + + +PP+ +++ +A + Q
Sbjct: 128 GGTTFKEVSGATLGLFQVKIPPTYYEQQKIAHTLSILDQ 166
>gi|21673510|ref|NP_661575.1| type I restriction system specificity protein [Chlorobium tepidum
TLS]
gi|21646618|gb|AAM71917.1| type I restriction system specificity protein [Chlorobium tepidum
TLS]
Length = 444
Score = 63.5 bits (153), Expect = 4e-09, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LGE C I MGQSP S + G+ G F + A +T ++ K A IL
Sbjct: 12 LGEECEIVMGQSPPSETCNTVGIGIPLLNGPTEFGPHHPSPA-QFTTDVRKRAIPGDILF 70
Query: 65 CVR-APVGVVNITEREICIGRGLCSVYPKYRIQSE-FWFYWLQCQKDTFEQKSTGTTFQA 122
CVR + G +N ++E IGRG+ ++ K++ + + F ++C ++TG+TF
Sbjct: 71 CVRGSTTGRMNWADQEYAIGRGIAAIRHKFKPELQPFVRAVIECYLPELLAQATGSTFPN 130
Query: 123 ISIELIKNILIPLPPSSEQKRI 144
+S + + N+ P + EQ+ I
Sbjct: 131 VSAQQLSNLKWPELAADEQRAI 152
>gi|149369906|ref|ZP_01889757.1| type I restriction-modification system specificity determinant
protein [unidentified eubacterium SCB49]
gi|149356397|gb|EDM44953.1| type I restriction-modification system specificity determinant
protein [unidentified eubacterium SCB49]
Length = 415
Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 22 ISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVGVVNITEREIC 81
+SNN +G+ TE+ I+K++ K+ P +LL RAP+G + I +
Sbjct: 235 LSNNKGKKYITRGEYDVTEQGIKKSS------LKLMPSGTVLLSSRAPIGYLAIARETVT 288
Query: 82 IGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAISIELIKNILIPLPP 137
+G S PK SEF +Y ++ + E +S G+TF+ +S +K I I PP
Sbjct: 289 TNQGFKSFEPKSYFTSEFLYYQIKNKIPLIEARSGGSTFKEVSASTLKTIKIITPP 344
>gi|26554275|ref|NP_758209.1| type I restriction-modification system S subunit [Mycoplasma
penetrans HF-2]
gi|26454284|dbj|BAC44613.1| type I restriction-modification system S subunit [Mycoplasma
penetrans HF-2]
Length = 519
Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 87/168 (51%), Gaps = 13/168 (7%)
Query: 2 WCRLGEICSITMGQSPESSFISN-NSDGMEF-------HQGKIHFTEKYIQKANNYTFNI 53
W +L IC + +G++P+ S +N NS+ + + GKI T++YI +
Sbjct: 353 WIKLSNICELILGKTPKRSINTNWNSNDINWVTISDMKDLGKIFSTKEYITN-EAFKNEF 411
Query: 54 TKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQ---SEFWFYWLQCQKDT 110
T+I+ K ++L+ + +G +I E + + ++ P Y +F FY L +
Sbjct: 412 TRISKKESLLMSFKLTIGRTSILEIDAVHNEAIVTINPYYDKDYAIRDFLFYTLGTFV-S 470
Query: 111 FEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
F +K++ I+ E + N+L+ LPP +EQ+RI+ I ++ + ++SI
Sbjct: 471 FIEKTSAIKGSTINKEKMINMLVSLPPINEQRRIIKSISKIHSLINSI 518
>gi|154174911|ref|YP_001408734.1| putative type I restriction-modification system, S subunit
[Campylobacter curvus 525.92]
gi|153793147|gb|EAT99394.2| putative type I restriction-modification system, S subunit
[Campylobacter curvus 525.92]
Length = 528
Score = 63.2 bits (152), Expect = 5e-09, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 17/172 (9%)
Query: 2 WCRLGEICSITMGQSPESSFISNNSDGMEF-------HQGKIHFTEKYIQKANNYTFNIT 54
W RLG + G +P + D M F + G + EK +K +
Sbjct: 362 WVRLGSMGVAQTGSTPSTQVRDFYGDYMPFIKPADITNSGIDYNNEKLSKKGTE----VG 417
Query: 55 KIAPKNAILL-CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQ 113
++A K +IL+ C+ +G +R + + + S+ P + +F FY+L FEQ
Sbjct: 418 RVAEKGSILMVCIGGSLGKCYFNDRIVSFNQQINSLTPFFS-SYKFIFYYL-LSSHFFEQ 475
Query: 114 ---KSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
++TGT ++ ++ILIPLPP EQKRIV KIEEL +D + + L
Sbjct: 476 LQDRATGTATPIVNKTSWESILIPLPPLPEQKRIVTKIEELLKFVDILQSSL 527
>gi|17232094|ref|NP_488642.1| type I site-specific deoxyribonuclease chain S [Nostoc sp. PCC
7120]
gi|17133739|dbj|BAB76301.1| type I site-specific deoxyribonuclease chain S [Nostoc sp. PCC
7120]
Length = 390
Score = 62.4 bits (150), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 10/166 (6%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
LGEI I MGQSP +NN G+ G F ++ +T + KIA +L
Sbjct: 9 LGEIADIIMGQSPTGETCNNNGQGLPLLNGPTEFGDRN-PLPTQFTIDPKKIAEAGDLLF 67
Query: 65 CVR-APVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYW-LQCQKDTFEQKSTGTTFQA 122
CVR + G +N +++ IGRG+ S+ K I + + ++ + + +TG+TF
Sbjct: 68 CVRGSTTGRMNWADQKYAIGRGIASIRAKDGILFQPYIRAIIEKELKSLLAVATGSTFPN 127
Query: 123 ISIELIKNILIPLPPS------SEQKRIV-AKIEELFAQLDSITAV 161
IS + + N+++ LP S RI+ KI L +Q +++ A+
Sbjct: 128 ISKDHLLNLIVQLPSKNIKIYISNLARILDEKIYNLRSQNETLEAI 173
>gi|15645090|ref|NP_207260.1| type I restriction enzyme S protein (hsdS) [Helicobacter pylori
26695]
gi|2313566|gb|AAD07524.1| type I restriction enzyme S protein (hsdS) [Helicobacter pylori
26695]
Length = 365
Score = 62.0 bits (149), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 53/99 (53%)
Query: 56 IAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKS 115
+ PK+AIL RAP+G V I E+ +C +G S+ P +I EF +Y L+ K+ F
Sbjct: 68 LLPKHAILFSSRAPIGYVAIAEKRLCTNQGFKSIIPNKKIYFEFLYYLLKYHKNNFINMG 127
Query: 116 TGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQ 154
GTT + I + + +PP+ +++ +A+ + Q
Sbjct: 128 EGTTIKGIYNIALGLFKVKIPPTYYEQQKIARTLSILDQ 166
>gi|154245043|ref|YP_001416001.1| restriction modification system DNA specificity domain
[Xanthobacter autotrophicus Py2]
gi|154159128|gb|ABS66344.1| restriction modification system DNA specificity domain
[Xanthobacter autotrophicus Py2]
Length = 450
Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 1 MWCRLGEICSITMGQSPESSFISN-NSDGMEFHQGK--IHFTEKYIQKA------NNYTF 51
+W GE+ I G +P + +N G+ + + E YI + Y
Sbjct: 13 LWASFGEVADIVGGGTPPTGDEANFTKQGVPWLTPADLTGYRETYISRGRRDLSEKGYRE 72
Query: 52 NITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTF 111
+ ++ PK +L RAPVG I + +G S K I E+ ++L +
Sbjct: 73 SAARLLPKGTVLFSSRAPVGYCAIASENVSTNQGFKSFILKGDISPEYVRHYLLGSTEYA 132
Query: 112 EQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQ 154
E K++GTTF+ +S + +PLPP EQ+RIVAKI+ L A+
Sbjct: 133 ESKASGTTFKELSGSRATELALPLPPLPEQRRIVAKIDSLTAK 175
>gi|145622248|ref|ZP_01778209.1| hypothetical protein PmobDRAFT_1688 [Petrotoga mobilis SJ95]
gi|144947397|gb|EDJ82428.1| hypothetical protein PmobDRAFT_1688 [Petrotoga mobilis SJ95]
Length = 121
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILL 64
L E+ I MGQSP+S S +G+ F+QG+ F KY + Y + KIA K +LL
Sbjct: 24 LQEVRQINMGQSPKSETYSEVGNGLPFYQGRRDFGRKY-PTVSVYCTDPKKIAIKGDVLL 82
Query: 65 CVRAPVGVVNITEREICIGRG 85
VRAPVG +N + CIG G
Sbjct: 83 TVRAPVGEINEAIEDCCIGLG 103
>gi|126208116|ref|YP_001053341.1| putative type I restriction system specificity protein
[Actinobacillus pleuropneumoniae L20]
gi|126096908|gb|ABN73736.1| putative type I restriction system specificity protein
[Actinobacillus pleuropneumoniae L20]
Length = 413
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 2/131 (1%)
Query: 4 RLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAIL 63
+LG+I I MGQSP SS ++ G G FT Y YT K A K +L
Sbjct: 3 KLGDIADIVMGQSPSSSDVNMERIGDPLLNGPTEFTSFYPSPV-QYTEKGKKFAEKGDLL 61
Query: 64 LCVR-APVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQA 122
CVR + G +N +++ IGRGL ++ K ++F L+ + Q +TG+TF
Sbjct: 62 FCVRGSTTGRINFADQKYAIGRGLAAIRGKNGYPTKFIELILKDCLERILQSATGSTFPN 121
Query: 123 ISIELIKNILI 133
+S ++ ++ I
Sbjct: 122 VSQAMLLDLDI 132
>gi|75909474|ref|YP_323770.1| Restriction modification system DNA specificity domain [Anabaena
variabilis ATCC 29413]
gi|75703199|gb|ABA22875.1| Restriction modification system DNA specificity domain [Anabaena
variabilis ATCC 29413]
Length = 557
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 4/157 (2%)
Query: 4 RLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAIL 63
+LG + + GQ ++ +G+ + G F E + A +T + +A KN IL
Sbjct: 90 KLGYLIELVSGQHLGQEEQNDQGEGLPYLTGPADFGE-FNPVATRWTNTVKALAKKNDIL 148
Query: 64 LCVR-APVGVVNITERE-ICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQ 121
+ V+ A VG NI E IGR L ++ P ++ EF + + + F+ S G+T
Sbjct: 149 ITVKGAGVGKANILSMEKAAIGRQLMAIRP-ILLEYEFIYLLIISSYEKFQALSIGSTVP 207
Query: 122 AISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
+ + I + + LPP +EQKRIV K + L + D I
Sbjct: 208 GMGRKDILDFSLGLPPLAEQKRIVEKCDRLLSTCDEI 244
>gi|2826248|gb|AAB98112.1| type I restriction-modification enzyme 2, S subunit
[Methanocaldococcus jannaschii DSM 2661]
Length = 343
Score = 59.7 bits (143), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 35 KIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYR 94
KI TE+ + +N + I PKN++L + +G I + E+ + + + PK
Sbjct: 70 KIKITEEGLNNSNAW------IVPKNSVLFAMYGSIGETAINKIEVATNQAILGIIPKDN 123
Query: 95 I-QSEFWFYWLQCQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQK---RIVAKIEE 150
I +SEF +Y L K+ + + TT + ++ +++K+ IPLPP EQK +I+ KI+E
Sbjct: 124 ILESEFLYYILAKNKNYYSKLGMQTTQKNLNAQIVKSFKIPLPPLEEQKQIAKILTKIDE 183
>gi|120601902|ref|YP_966302.1| restriction modification system DNA specificity domain
[Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120562131|gb|ABM27875.1| restriction modification system DNA specificity domain
[Desulfovibrio vulgaris subsp. vulgaris DP4]
Length = 595
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/60 (45%), Positives = 41/60 (68%)
Query: 98 EFWFYWLQCQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDS 157
+F+F LQ D +K++ T + +S + + I +PLPP +EQ RIVAKIEELF++LD+
Sbjct: 122 KFFFLALQPYLDAIHEKTSSVTVKHLSSKTVNEIPLPLPPLNEQNRIVAKIEELFSELDA 181
>gi|21228301|ref|NP_634223.1| type I restriction-modification system specificity subunit
[Methanosarcina mazei Go1]
gi|20906763|gb|AAM31895.1| type I restriction-modification system specificity subunit
[Methanosarcina mazei Go1]
Length = 384
Score = 58.9 bits (141), Expect = 8e-08, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 11/142 (7%)
Query: 12 TMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVG 71
TMGQSP + + G QG F ++ ++ YT T++A + L+ VRAPVG
Sbjct: 210 TMGQSPPGTSYNQEGVGKPMFQGNADFGFRFPEE-RVYTTEPTRLAYPHDTLISVRAPVG 268
Query: 72 VVNITEREICIGRGLCSVYPKYRIQSEFW---FYWLQCQKDTFEQ-KSTGTTFQAISIEL 127
N+ + E CIGRG+ + +Y+ ++F+ ++ L+ D ++ GT F +IS
Sbjct: 269 AQNMAKVECCIGRGVSAF--RYKANNDFYTYTYFKLRSLMDEIKKFNDEGTVFGSISKTD 326
Query: 128 IKNILIPLPPSSEQKRIVAKIE 149
+ I +PP I+ K E
Sbjct: 327 FLQMGIAIPPED----IIEKFE 344
>gi|32266920|ref|NP_860952.1| hypothetical protein HH1421 [Helicobacter hepaticus ATCC 51449]
gi|32262972|gb|AAP78018.1| hypothetical protein HH_1421 [Helicobacter hepaticus ATCC 51449]
Length = 422
Score = 58.9 bits (141), Expect = 9e-08, Method: Composition-based stats.
Identities = 43/162 (26%), Positives = 79/162 (48%), Gaps = 10/162 (6%)
Query: 5 LGEICSITMGQSPESS---FISNN-----SDGMEFHQGKIHFTEKYIQKANNYTFNITKI 56
LGE+ + G +P ++ F S N S +E I +K+I ++ + T +
Sbjct: 234 LGEVFKVIGGGTPSTANPKFWSGNIAWITSANIENENFTI-IPKKFINQSA-IQASATNL 291
Query: 57 APKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKST 116
PKN I++ R +G V IT+ E C + ++ P + +F + ++ + F S
Sbjct: 292 VPKNTIIVVTRVGLGKVGITDVETCFSQDSQALLPLIDLNVKFMAFQIRNKAQNFIVSSR 351
Query: 117 GTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
GTT I+ + +K + + +PP + Q +IV +E FA L+ +
Sbjct: 352 GTTINGITKDTLKKVALKIPPLATQNQIVQILESKFAHLEKL 393
>gi|67919739|ref|ZP_00513304.1| Restriction modification system DNA specificity domain:N-6 DNA
methylase:Type I restriction-modification system, M
subunit [Chlorobium limicola DSM 245]
gi|67782637|gb|EAM42051.1| Restriction modification system DNA specificity domain:N-6 DNA
methylase:Type I restriction-modification system, M
subunit [Chlorobium limicola DSM 245]
Length = 846
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 24/176 (13%)
Query: 5 LGEICSITMGQSPESS------------FISNNSDGMEFHQGKIHFTEKYIQKANNYTFN 52
L EIC+ G +P S+ +S + G E + T+K ++ +N
Sbjct: 461 LDEICTFMTGGTPTSTIAEYYEGGTVPWLVSGDIHGFEIMACEKRITQKAVENSN----- 515
Query: 53 ITKIAPKNAILLCV------RAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQC 106
K+ PK+++L+ + R V ++ +T + P R SEF F+ L+
Sbjct: 516 -AKVLPKDSVLIALNGQGKTRGTVALLRMTGATCNQSLVAITPAPPPRAISEFIFWALRS 574
Query: 107 QKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
+ T ++I ++KNI IPLPP QK +VA+IE ++ AVL
Sbjct: 575 MYSDIRALTGDTERSGLNIPILKNIQIPLPPLEVQKEVVAEIEGYQNVINGARAVL 630
>gi|23452743|gb|AAN33142.1| putative type I specificity subunit HsdS [Campylobacter jejuni]
Length = 414
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 41/175 (23%), Positives = 83/175 (47%), Gaps = 20/175 (11%)
Query: 2 WCRLGEICSITMGQSPESS----FISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITK-- 55
W LGEIC I G +P++ + S+ +D ++F K ++ + Y + +
Sbjct: 215 WKSLGEICEILGGGTPDTKNPIFWYSSQADEVQFE--KSYYWATLVDTKQKYLYGTKRKI 272
Query: 56 -----------IAPKNAILLCVRAPVGVVNITEREICIGRGLCS-VYPKYRIQSEFWFYW 103
+ P N+++ RA +G ++I + E +G + + + + EF ++
Sbjct: 273 TQKGLDCSNAILLPINSVIFSSRASIGEISIAKVETATNQGYKNFICDESILYYEFLYFA 332
Query: 104 LQCQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
L+ E + GTT++ +S IK+ IPLPP EQ++I ++ +F + ++
Sbjct: 333 LKHFTKEIELLAQGTTYKEVSKAKIKDFKIPLPPLKEQEQITKHLDFIFEKAKAL 387
>gi|156866399|gb|EDO59771.1| hypothetical protein CLOLEP_03821 [Clostridium leptum DSM 753]
Length = 444
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 3/156 (1%)
Query: 2 WCRLGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNA 61
W R +I ++ G+ + + ++ G+ + G + E + + N I+ KN
Sbjct: 36 WVRFSKIINLISGRDAKLTDCNSLGIGIPYILGASNL-ENNVFTIERWIENPQVISLKND 94
Query: 62 ILLCVRAPVGVVNITERE-ICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTTF 120
+LL V+ +G V + + E + I R + ++ + F ++ + D+F Q G
Sbjct: 95 VLLSVKGTIGKVYLQKEEKVNISRQIMAIRTSSTLFPRFTYWLVNNISDSFRQAGNGL-I 153
Query: 121 QAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLD 156
IS E I +P PP EQ+RIV +IE LFA+LD
Sbjct: 154 PGISREDILQKEVPFPPLPEQQRIVDRIESLFAKLD 189
>gi|94267246|ref|ZP_01290822.1| Restriction modification system DNA specificity domain [delta
proteobacterium MLMS-1]
gi|93452076|gb|EAT02762.1| Restriction modification system DNA specificity domain [delta
proteobacterium MLMS-1]
Length = 578
Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats.
Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 17/174 (9%)
Query: 2 WCRLGEICSITMGQSPE------------SSFISNNSDGMEFHQGKIHFTEKYIQKANNY 49
WCR +I + G+S + + D + FT Y N
Sbjct: 390 WCRFTDIGELARGKSKHRPRNDPALYIGGKTPLVQTGDVARADRKITTFTALY----NQA 445
Query: 50 TFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYP-KYRIQSEFWFYWLQCQK 108
+K+ + + + A +G I + C + P R+++E++ Y+L+ K
Sbjct: 446 GVEQSKLWKAGTLCITIAANIGDTGILGFDACFPDSVVGFTPFDDRLKNEYFEYFLRTAK 505
Query: 109 DTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
E+ + T + I++E+++N+L+PLPP+ E RIV K ++L D A L
Sbjct: 506 KNLEEFAPSTAQKNINLEVLQNVLVPLPPARELVRIVEKTDKLMGLCDQFKASL 559
>gi|26554274|ref|NP_758208.1| type I restriction-modification system S subunit [Mycoplasma
penetrans HF-2]
gi|26454283|dbj|BAC44612.1| type I restriction-modification system S subunit [Mycoplasma
penetrans HF-2]
Length = 415
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 55 KIAPKNAILLCVRAPVG--VVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQ--KDT 110
KIAPKN ILLC+ + IT +++C G L + + + + FY+LQ K+
Sbjct: 312 KIAPKNKILLCIEGGSAGKKIGITSKDVCFGNKLVCI-NDFLSNNLYLFYFLQSYYFKNI 370
Query: 111 FEQKSTGTTFQAISIELIKNILIPLPPSSE 140
F Q +TG ISI+ +KNI+IPLPP E
Sbjct: 371 FNQLTTGI-IGGISIQNLKNIMIPLPPKRE 399
>gi|94263107|ref|ZP_01286925.1| Restriction modification system DNA specificity domain [delta
proteobacterium MLMS-1]
gi|93456478|gb|EAT06592.1| Restriction modification system DNA specificity domain [delta
proteobacterium MLMS-1]
Length = 456
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKY-IQKANNYTFNITKIAPKNAIL 63
+G + MGQSP + G+ F QG+ F +Y Q+ Y ++A L
Sbjct: 268 VGAKFDVIMGQSPPGQSYNEIGQGLPFFQGRRDFGFRYPTQRV--YCTEPKRLANPGDTL 325
Query: 64 LCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQ-KSTGTTFQA 122
+ VRAPVG +N+ + CIGRG+ +V K +S F +Y ++ + F + GT F +
Sbjct: 326 ISVRAPVGDINMARVKCCIGRGVAAVRHKSESRS-FTYYSMRALTEQFSSYEGEGTVFGS 384
Query: 123 IS 124
I+
Sbjct: 385 IN 386
>gi|10954528|ref|NP_044167.1| type I restriction enzyme subunit S [Methanocaldococcus jannaschii
DSM 2661]
gi|12229988|sp|Q60296|T1SH_METJA Putative type I restriction enzyme MjaXP specificity protein (S
protein) (S.MjaXP)
gi|1522674|gb|AAC37110.1| hypothetical protein MJ_ECL41 [Methanocaldococcus jannaschii DSM
2661]
Length = 432
Score = 56.6 bits (135), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 25 NSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGR 84
N + + +G+ + TEK +++ + +I PK ILL RAP+G V I + + +
Sbjct: 64 NYEYIYISRGERNITEKAVKECS------LRIFPKGTILLTSRAPIGYVAIAKNPLTTNQ 117
Query: 85 GLCSVYPKYRIQSEFWFYWLQCQ--KDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQK 142
G ++ PK + SE+ +Y + + + + S G+TF + +K + IP P EQ+
Sbjct: 118 GFRNIIPKDGVVSEYLYYLFKTKTMSEYLKDISGGSTFPELKGSTLKEVEIPYPSPEEQQ 177
Query: 143 RI 144
+I
Sbjct: 178 KI 179
>gi|51893047|ref|YP_075738.1| type I restriction-modification system specificity determinant
protein [Symbiobacterium thermophilum IAM 14863]
gi|51856736|dbj|BAD40894.1| type I restriction-modification system specificity determinant
protein [Symbiobacterium thermophilum IAM 14863]
Length = 400
Score = 56.2 bits (134), Expect = 6e-07, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 39 TEKYIQKANNYTFNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSE 98
TE+ I +A + + + P+ +LL RAP+G + IT+ I +G ++ P ++ E
Sbjct: 246 TERMISEAGLKKIS-SGLLPEGTLLLSSRAPIGYLAITKIPTAINQGFIAMPPAGQLSPE 304
Query: 99 FWFYWLQCQKDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKR 143
+ +W DT +Q + G+TF IS + I + +PP+ R
Sbjct: 305 YMLFWSHYNLDTIKQHANGSTFMEISKAAFRKIKLVVPPAQLVNR 349
>gi|23452748|gb|AAN33144.1| putative type I specificity subunit HsdS [Campylobacter jejuni]
Length = 378
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 6 GEICSITMGQSPESSFISNNSDGM-------EFHQGKIHFTEKYIQKANNYTFNITKIAP 58
G+I I+ G +P + +G+ + + I TE++I + + + K+
Sbjct: 1 GDIAEISSGGTPSRNKKEYWENGIIPWVKIKDIKENFISTTEEFITE-DGLKNSSAKLFK 59
Query: 59 KNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYR-IQSEFWFYWLQCQKDTFEQKSTG 117
K +L + A +G V I + + + + + K I S + Y+L+ KD K G
Sbjct: 60 KGTLLYSIFATLGEVAILDIDATTNQAIAGINIKENNINSLYLMYFLKSIKDKICSKGRG 119
Query: 118 TTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
+++ ++K I IPLPP EQ+RIV ++E FA++D +L
Sbjct: 120 VAQNNLNLTILKQIQIPLPPLKEQERIVGILDESFAKIDESIKIL 164
>gi|149115916|ref|ZP_01842652.1| restriction modification system DNA specificity domain [Shewanella
baltica OS223]
gi|146864200|gb|EDK49637.1| restriction modification system DNA specificity domain [Shewanella
baltica OS223]
Length = 406
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 55 KIAPKNAILL-CVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQ 113
K PK++ILL + A +G V + E E C + + ++ K +I ++ +YWL K
Sbjct: 75 KKMPKDSILLVAIGATIGKVGLAEDESCFNQQVTGIHFKEKIHPKYAYYWLSYIKPEIIT 134
Query: 114 KSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDS 157
KS+ T I+ IK + P EQK IV K++ L ++D+
Sbjct: 135 KSSQATLPIINQTGIKGLSFLYPEKEEQKCIVEKLDALLTRIDT 178
>gi|26991425|ref|NP_746850.1| type I restriction-modification system, S subunit [Pseudomonas
putida KT2440]
gi|24986497|gb|AAN70314.1|AE016672_5 type I restriction-modification system, S subunit [Pseudomonas
putida KT2440]
Length = 576
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 10/131 (7%)
Query: 37 HFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVGVVNITEREIC---IGRGLCSVYPKY 93
H EK I + + T+I IL+ V +G + I I R +C V P
Sbjct: 133 HKPEKSISPEVDRQYERTRIR-GGEILMGVVGSIGKLGIAPESWAGANIARAICRVVPSV 191
Query: 94 RIQSEFWFYWLQCQKDTFEQKSTGTTFQ----AISIELIKNILIPLPPSSEQKRIVAKIE 149
+ ++ + LQ D ++ G T +++ LI++ PLPP +EQ RIVAK+E
Sbjct: 192 HVSKDYIIWLLQ--SDLMRKQFLGDTRTLAQPTLNVGLIRSAAAPLPPLAEQHRIVAKVE 249
Query: 150 ELFAQLDSITA 160
EL A D + A
Sbjct: 250 ELMALCDRLEA 260
>gi|94266803|ref|ZP_01290467.1| Restriction modification system DNA specificity domain [delta
proteobacterium MLMS-1]
gi|93452525|gb|EAT03114.1| Restriction modification system DNA specificity domain [delta
proteobacterium MLMS-1]
Length = 603
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 2 WCRLGEICSITMGQSPESSFISNNSDGME-FHQGK-----IHFTEKYIQKANNYTFNITK 55
+CRL EI + G +P+ G+ F G+ I E+ I + ++
Sbjct: 107 YCRLNEIGTWGSGATPKRGITEYYDGGIPWFKSGELVGDFISSAEETITERALKETSVRL 166
Query: 56 IAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKS 115
P + ++ A +G +I + + +C+ P I + + +L+ K F
Sbjct: 167 NLPGDVLIAMYGATIGKASILKCHATTNQAVCACTPFSGILNTYLLNFLKASKRHFTSMG 226
Query: 116 TGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
G IS E I ++ PLPP +EQ RIV K++EL A D +
Sbjct: 227 AGGAQPNISKEKIIAVVFPLPPLAEQHRIVEKVDELMALCDRL 269
>gi|150401945|ref|YP_001329239.1| restriction modification system DNA specificity domain
[Methanococcus maripaludis C7]
gi|150032975|gb|ABR65088.1| restriction modification system DNA specificity domain
[Methanococcus maripaludis C7]
Length = 432
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 70/160 (43%), Gaps = 9/160 (5%)
Query: 5 LGEICSITMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNIT---------K 55
L EIC++ G +P+++ DG T K + IT K
Sbjct: 244 LDEICTVMGGGTPKTNVPEYWQDGTILWATPTDMTSKKSPVIDTTEKKITELGLKESSAK 303
Query: 56 IAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKS 115
+ PK +IL+ RA +G +I +EI +G ++ ++ + F Y L+ KD +
Sbjct: 304 LVPKGSILMTSRATIGYSSIAMKEISTNQGFINIICDKKVSNYFILYLLEHIKDKIIALA 363
Query: 116 TGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQL 155
G+TF IS KNI + +P ++ IEEL ++
Sbjct: 364 NGSTFLEISKTNFKNIRVIVPDYQTMEKYNEIIEELINKI 403
>gi|119356723|ref|YP_911367.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
gi|119354072|gb|ABL64943.1| N-6 DNA methylase [Chlorobium phaeobacteroides DSM 266]
Length = 834
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 12 TMGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVG 71
T+ P + FI+ E + +E+ +++++ K+ P+N++++ RA +G
Sbjct: 491 TLADLPSTDFIT------EIRSTRRTISERGLRESS------AKMIPENSVIVSTRATIG 538
Query: 72 VVNITEREICIGRGLCSVY--PKYRIQSEFWFYWLQCQKDTFEQKSTGTTFQAISIELIK 129
+ I + +G +V K ++ SE+ L T +TG TF+ I
Sbjct: 539 RIAINRIPMATNQGFKNVIIEDKSKVISEYVALALTKLVPTMNAWATGGTFKEIPKSRFC 598
Query: 130 NILIPLPPSSEQKRIVAKIEELFAQLDSITAVL 162
+ IPLPP QK+IVAKIE +D AVL
Sbjct: 599 ELEIPLPPLEVQKKIVAKIEGYQKVIDGARAVL 631
>gi|42528243|ref|NP_973341.1| type I restriction-modification system, S subunit, truncation
[Treponema denticola ATCC 35405]
gi|41819513|gb|AAS13260.1| type I restriction-modification system, S subunit, truncation
[Treponema denticola ATCC 35405]
Length = 175
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 19/159 (11%)
Query: 2 WCRLGEICSITMGQSPESSFISNNSDGMEFHQGK--IHFTEKYIQKANNYTFNITKIAPK 59
WC G++ + G+ N +E G+ I+ + + AN+Y I PK
Sbjct: 29 WCHFGDVADVINGK---------NQSQVEDDTGEYPIYGSGGIMGYANDY------ICPK 73
Query: 60 NAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKSTGTT 119
N ++ + + E + + P + + FY+ C+ F + TT
Sbjct: 74 NCTIIGRKGSINNPIFVEEKFWNVDTAFGLAPSSIVLPRYLFYF--CKSFDFTSLDSSTT 131
Query: 120 FQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSI 158
+++ I++IL PLPP Q+RI+ KI+ELF+QL+ I
Sbjct: 132 LPSLTKTSIRSILFPLPPFVAQQRILDKIDELFSQLEKI 170
>gi|89098144|ref|ZP_01171029.1| type I restriction modification system, subunit S [Bacillus sp.
NRRL B-14911]
gi|89087001|gb|EAR66117.1| type I restriction modification system, subunit S [Bacillus sp.
NRRL B-14911]
Length = 435
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/102 (27%), Positives = 57/102 (55%)
Query: 56 IAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQKS 115
+ P +IL+ RA +G +I I +G S + +E+ +Y+L+ K F +
Sbjct: 90 LLPAGSILMTSRATIGERSIATAPISTNQGFKSFVCHDGLSNEYMYYYLEILKQYFLLNA 149
Query: 116 TGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDS 157
+G+TF +S ++I+N ++ +PP EQ++IV + + Q+++
Sbjct: 150 SGSTFLEVSKQVIENQVMAIPPHKEQQKIVEVLSTVDEQIEN 191
>gi|118743998|ref|ZP_01591997.1| restriction modification system DNA specificity domain [Geobacter
lovleyi SZ]
gi|118683155|gb|EAV89555.1| restriction modification system DNA specificity domain [Geobacter
lovleyi SZ]
Length = 422
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%)
Query: 55 KIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQK 114
K P +LL RAP+G + I E+ +G S P S F +Y L+ T Q
Sbjct: 293 KKYPAGTVLLSSRAPIGYMAIAREELTTNQGFKSFIPTNDYSSAFIYYTLKNSLKTIVQH 352
Query: 115 STGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLD 156
++G+TF+ +S ++K + I LP S ++ + F + D
Sbjct: 353 ASGSTFKEVSGAVLKTVKICLPASGVVEQFTNAVAPTFKRQD 394
>gi|148544101|ref|YP_001271471.1| restriction modification system DNA specificity domain
[Lactobacillus reuteri F275]
gi|148531135|gb|ABQ83134.1| restriction modification system DNA specificity domain
[Lactobacillus reuteri F275]
Length = 211
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 52/101 (51%)
Query: 55 KIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQK 114
K+ P N IL RAP+G ++I + + +G SV P +F + L+ + + +
Sbjct: 89 KLLPTNTILFSSRAPIGYISIAKNNLATNQGFKSVIPNKEYSFQFIYELLKHETAAIKNE 148
Query: 115 STGTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQL 155
+ G+TF+ IS + +K +I +P S + + + +F QL
Sbjct: 149 ANGSTFKEISGKKLKQHIINIPNSEDTSKFNEITKPIFKQL 189
>gi|150006638|ref|YP_001301382.1| type I restriction enzyme EcoR124II specificity protein
[Bacteroides vulgatus ATCC 8482]
gi|149935062|gb|ABR41760.1| type I restriction enzyme EcoR124II specificity protein
[Bacteroides vulgatus ATCC 8482]
Length = 447
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 93 YRIQSEFWFYWLQCQ---KDTFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKIE 149
Y+I +++ ++ ++ + K ++ S GTT I+IE K ++PLPP +EQ+RIVAKIE
Sbjct: 374 YQINAKYIYHIMRSEYMLKQMYDN-SKGTTVDTITIEKAKQYILPLPPLAEQQRIVAKIE 432
Query: 150 ELFAQLDSI 158
E F+ D I
Sbjct: 433 ETFSIFDGI 441
>gi|124520753|ref|ZP_01695856.1| restriction modification system DNA specificity domain [Bacillus
coagulans 36D1]
gi|124497354|gb|EAY44916.1| restriction modification system DNA specificity domain [Bacillus
coagulans 36D1]
Length = 427
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 20/159 (12%)
Query: 4 RLGEICSITMGQSPESSFISN-------------NSDGMEFHQGKIHFTEKYIQKANNYT 50
++ E+C++ G +P ++ N S G K TEK ++ ++
Sbjct: 237 KIKEVCNVVSGGTPSTNDKKNWDGNIPWCTPTDITSSGKFIRNTKQTITEKGLKNSS--- 293
Query: 51 FNITKIAPKNAILLCVRAPVGVVNITEREICIGRGLCS-VYPKYRIQSEFWFYWLQCQKD 109
+ PKN+IL+C RA +G +I E+ +G S V + + EF++Y L
Sbjct: 294 ---ANLLPKNSILMCSRATIGPRSINRVEMATNQGFKSFVCNEEYLDYEFFYYLLSIYIP 350
Query: 110 TFEQKSTGTTFQAISIELIKNILIPLPPSSEQKRIVAKI 148
F++ ++G+TF +S + ++N I +P ++++ + I
Sbjct: 351 IFKKLASGSTFLEVSKKDVENTKIFIPKDVKEQKAIGSI 389
>gi|121608003|ref|YP_995810.1| restriction modification system DNA specificity domain
[Verminephrobacter eiseniae EF01-2]
gi|121552643|gb|ABM56792.1| restriction modification system DNA specificity domain
[Verminephrobacter eiseniae EF01-2]
Length = 575
Score = 53.5 bits (127), Expect = 4e-06, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 14/169 (8%)
Query: 2 WCRLGEICSITMGQSPESSFISN-NSDGMEF-------HQGKIHFTEKYIQKANNYTFNI 53
W RLG + +G++P S + +G + H G++ T++ + F
Sbjct: 86 WVRLGALLPFRIGKTPASEDPQYWDQEGYAWVSISDMAHLGEVFDTQRKLTARGAQVFGY 145
Query: 54 TKIAPKNAILLCVRAPVGVVNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQ 113
+ P +++ + +G +++ + S+ P + ++F Y L T
Sbjct: 146 EPL-PVGTLIMSFKLTIGKISVLRVPAYHNEAIVSLMPLCGLVTDFLKYMLPTVSKTGVS 204
Query: 114 KST--GTTFQAISIELIKNILIPLPPSSEQKRIVAKIEELFAQLDSITA 160
K GTT S+ N+LI LPP+ EQ RIVA++EEL D++ A
Sbjct: 205 KEALMGTTLNTQSLS---NLLIALPPAVEQSRIVARVEELMRLCDTLEA 250
>gi|152991445|ref|YP_001357167.1| type I restriction-modification system, S subunit [Nitratiruptor
sp. SB155-2]
gi|151423306|dbj|BAF70810.1| type I restriction-modification system, S subunit [Nitratiruptor
sp. SB155-2]
Length = 373
Score = 53.1 bits (126), Expect = 6e-06, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 13 MGQSPESSFISNNSDGMEFHQGKIHFTEKYIQKANNYTFNITKIAPKNAILLCVRAPVGV 72
MG SP+ S + G+ +QG F ++ +K +T + A K L+ VRAPVG
Sbjct: 198 MGHSPKGSSFNEYGFGIPMYQGNADFGFRFPKK-RIFTTEPKRFAEKFDTLISVRAPVGE 256
Query: 73 VNITEREICIGRGLCSVYPKYRIQSEFWFYWLQCQKDTFEQ----KSTGTTFQAISIELI 128
N+ + CIGRGL +Y++ F+ Y K + GT F +IS
Sbjct: 257 QNMALEKCCIGRGLARF--RYKLNPNFYSYTYYKLKYLINKIKLFNDEGTVFGSISKGDF 314
Query: 129 KNILIPLPP 137
+ + I +PP
Sbjct: 315 QKLEIMIPP 323
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.322 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,573,335
Number of Sequences: 5470121
Number of extensions: 21127388
Number of successful extensions: 43255
Number of sequences better than 1.0e-05: 94
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 43084
Number of HSP's gapped (non-prelim): 153
length of query: 162
length of database: 1,894,087,724
effective HSP length: 122
effective length of query: 40
effective length of database: 1,226,732,962
effective search space: 49069318480
effective search space used: 49069318480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)