BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query             position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence          begin  end (left)    repeat   class/family   begin  end (left)  ID

   27   0.0  0.0  0.0  A05H12_CONSENSUS    532  558   (64) +  AT_rich  Low_complexity     1   27    (0)      

Alignments:
27  0.00  0.00  0.00  A05H12_CONSENSUS  532  558  (64)  AT_rich#Low_complexity  1  27  (273)  5

  A05H12_CONSENSU    532 AATTTAATTTTAATTATTTAAAATTTT 558    
                           vvvv vvv   v  v vv   vv v
  AT_rich#Low_com      1 AAAAATAAAATAAATAATATAAAAATA 27

Transitions / transversions = 0.00 (0 / 14)
Gap_init rate = 0.00 (0 / 27), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>A05H12_CONSENSUS
AGAAACCCTAGCCTCTCACCCTCCCTGCGTCACGATGCAGATCTTCGTGA
AAACCCTAACGGGTAAGACGATCACCCTTGAGGTGGAGTCTTCTGACACC
ATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCGGA
CCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTGGAGGACGGCCGCACCC
TCGCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTCGTCCTCCGT
CTCCGCGGTGGCGCCAAGAAGCGCAAGAAGAAGACCTACACCAAGCCCAA
GAAAGATCAAGCACAAGCACAAGAAGGTCAAGCTCGGCATTCTCCAGTTC
TACAAGGTCGACGATTCTGGAAAAGTGCAGANGCTCCGCAAGGAGTGCCC
CAACGCCGAATGTGGTGCCGGGACTTTCATGGCCAATCACTTCGACCGCC
ACTATTGCGGCAAGTGTGGCTTGACCTATTTTACCAAAAAGGCGATGCTT
AAATTCCTTGGAATTGAATTCNCNGTGGTTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNGGTTTATNTTTTTGTTCCATAATGTTWTGACTGTTTGGGCTT
TGAATAAACCTTTANGAATACG

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       622 bp
GC level:         50.24 %
bases masked:        27 bp (  4.34 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       0            0 bp     0.00 %
Low complexity:       1           27 bp     4.34 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  A05H12_CONSENSUS
        (622 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 23 Sequences     : less than 23 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 9269 1389 |============================================================
   6310 7880 1038 |=============================================
   3980 6842 1133 |=================================================
   2510 5709  937 |========================================
   1580 4772  789 |==================================
   1000 3983  663 |============================
    631 3320  510 |======================
    398 2810  490 |=====================
    251 2320  356 |===============
    158 1964  290 |============
    100 1674  217 |=========
   63.1 1457  170 |=======
   39.8 1287  138 |======
   25.1 1149  134 |=====
   15.8 1015   91 |===
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 924  <<<<<<<<<<<<<<<<<
   10.0  924   79 |===
   6.31  845   54 |==
   3.98  791   54 |==
   2.51  737   44 |=
   1.58  693   35 |=
   1.00  658   22 |:
   0.63  636   14 |:
   0.40  622   18 |:
   0.25  604   16 |:
   0.16  588   11 |:
   0.10  577   11 |:
  0.063  566   11 |:
  0.040  555    8 |:
  0.025  547    7 |:
  0.016  540   12 |:
  0.010  528    5 |:
 0.0063  523   12 |:
 0.0040  511    6 |:
 0.0025  505    2 |:
 0.0016  503    4 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|541954|pir||S40240ubiquitin/ribosomal protein S27a... +2   452  6.0e-75   2
gi|1771780|emb|CAA71132.1|(Y10024) ubiquitin extensio... +2   452  1.2e-74   2
gi|541953|pir||S40239ubiquitin/ribosomal protein S27a... +2   452  1.6e-74   2
gi|2894306|emb|CAA11268.1|(AJ223329) ubiquitin extens... +2   452  1.6e-74   2
gi|279636|pir||UQTO7Aubiquitin / ribosomal protein S2... +2   452  3.3e-74   2
gi|10180023|gb|AAG13985.1|AF298826_1(AF298826) ubiqui... +2   452  6.8e-74   2
gi|99772|pir||D36571ubiquitin / ribosomal protein S27... +2   452  2.9e-73   2
gi|99771|pir||C36571ubiquitin / ribosomal protein S27... +2   452  3.7e-73   2
gi|100599|pir||JH0227ubiquitin / ribosomal protein S2... +2   453  9.8e-73   2
gi|82733|pir||JS0657ubiquitin / ribosomal protein S27... +2   452  2.0e-72   2
gi|902525|gb|AAA70104.1|(U29160) ubiquitin fusion pro... +2   452  2.3e-71   2
gi|8778573|gb|AAF79581.1|AC007945_1(AC007945) F28C11.... +2   452  2.9e-71   2
gi|1044940|emb|CAA63150.1|(X92422) fusion gene [Zea m... +2   442  3.3e-70   2
gi|3319208|gb|AAC26159.1|(U68751) ubiquitin-carboxyl ... +2   448  1.8e-69   2
gi|7439601|pir||T04026probable ubiquitin / ribosomal ... +2   429  2.6e-68   2
gi|4151082|emb|CAA76578.1|(Y17004) ubiquitin [Suberit... +2   427  7.8e-67   2
gi|1763015|gb|AAC60279.1|(U67931) ubiquitin/ribosomal... +2   432  5.4e-66   2
gi|4506713ref|NP_002945.1| ribosomal protein S27a [Ho... +2   432  6.9e-66   2
gi|600539|gb|AAA57047.1|(M24507) ubiquitin [synthetic... +2   432  6.9e-66   2
gi|12728063ref|XP_002255.2| ribosomal protein S27a [H... +2   432  6.9e-66   2
gi|2144011|pir||I52328ubiquitin / ribosomal protein S... +2   432  1.8e-65   2
gi|5531281|emb|CAB50894.1|(AJ243802) ubiquitin fusion... +2   431  5.4e-64   2
gi|70657|pir||UQFFR7ubiquitin / ribosomal protein S27... +2   425  5.4e-64   2
gi|340062|gb|AAA36788.1|(M10939) pro-ubiquitin [Homo ... +2   412  8.9e-64   2
gi|7493577|pir||T39061ubiquitin-like protein - fissio... +2   436  3.0e-63   2
gi|12043554|emb|CAC19767.1|(AL512496) ubiquitin-like ... +2   436  3.0e-63   2
gi|6323196ref|NP_013268.1| Ribosomal protein S31 (S37... +2   431  1.3e-62   2
gi|3265058|gb|AAC24705.1|(AF060232) monoubiquitin/car... +2   434  2.1e-62   2
gi|11275235|pir||T46664ubiquitin/S27a fusion protein ... +2   429  2.6e-62   2
gi|6690640|gb|AAF24230.1|AF175521_1(AF175521) UBI1 [A... +2   430  7.0e-62   2
gi|3152950|emb|CAA75692.1|(Y15608) ubiquitin fusion p... +2   431  1.8e-61   2
gi|279635|pir||UQWO7Aubiquitin / ribosomal protein S2... +2   425  4.8e-61   2
gi|4587234|dbj|BAA76675.1|(AB021973) ubiquitin/79aa f... +2   420  1.6e-60   2
gi|1184755|gb|AAA97886.1|(U45317) ubiquitin c-termina... +2   429  2.6e-60   2
gi|70659|pir||UQNCRubiquitin / ribosomal protein S27a... +2   405  5.5e-60   2
gi|3047316|gb|AAC13690.1|(AF056624) ubiquitin fusion ... +2   431  4.9e-57   2
gi|70660|pir||UQDOR7ubiquitin / ribosomal protein S27... +2   403  3.0e-55   2
gi|167941|gb|AAA33264.1|(M23750) ubiquitin [Dictyoste... +2   398  1.0e-54   2
gi|100981|pir||S25001ubiquitin/ribosomal protein S27a... +3   305  8.9e-54   2
gi|100598|pir||JH0226ubiquitin / ribosomal protein S2... +2   454  5.8e-42   1
gi|2133278|pir||S62680ubiquitin/ribosomal protein S27... +2   420  2.3e-38   1
gi|10140701|gb|AAG13535.1|AC023240_8(AC023240) putati... +2   290  6.6e-38   2
gi|1076678|pir||S42643ubiquitin / ribosomal protein S... +2   407  5.6e-37   1
gi|6692129|gb|AAF24594.1|AC007654_10(AC007654) T19E23... +2   383  1.9e-34   1
gi|1362009|pir||S55242polyubiquitin 2 - Arabidopsis t... +2   383  1.9e-34   1
gi|485518|pir||S33633ubiquitin / ribosomal protein CE... +2   382  2.5e-34   1
gi|421929|pir||S34285polyubiquitin - tomato >gi|31216... +2   381  3.2e-34   1
gi|6322043ref|NP_012118.1| Ribosomal protein L40A; Rp... +2   381  3.2e-34   1
gi|70642|pir||UQMUMpolyubiquitin 5 - Arabidopsis thal... +2   380  4.0e-34   1
gi|11275233|pir||T48345polyubiquitin (ubq3) - Arabido... +2   380  4.0e-34   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|541954              |                     ___________________          
gi|1771780             |                     ___________________          
gi|541953              |                     ___________________          
gi|2894306             |                     ___________________          
gi|279636              |                     ___________________          
gi|10180023            |                     ___________________          
gi|99772               |                     ___________________          
gi|99771               |                     ___________________          
gi|100599              |                     ___________________          
gi|82733               |                     ___________________          
gi|902525              |                     ___________________          
gi|8778573             |                     ___________________          
gi|1044940             |                     __________________           
gi|3319208             |                     _________________            
gi|7439601             |                     ___________________          
gi|4151082             |                     ___________________          
gi|1763015             |                     __________________           
gi|4506713             |                     __________________           
gi|600539              |                     __________________           
gi|12728063            |                     __________________           
gi|2144011             |                     __________________           
gi|5531281             |                     ___________________          
gi|70657               |                     __________________           
gi|340062              |                     __________________           
gi|7493577             |                     _________________            
gi|12043554            |                     _________________            
gi|6323196             |                     __________________           
gi|3265058             |                     __________________           
gi|11275235            |                     ___________________          
gi|6690640             |                     __________________           
gi|3152950             |                     _________________            
gi|279635              |                     __________________           
gi|4587234             |                     __________________           
gi|1184755             |                     _________________            
gi|70659               |                     ___________________          
gi|3047316             |                     ___________________          
gi|70660               |                     __________________           
gi|167941              |                     __________________           
gi|100981              |                     ___________________          
gi|100598              |                     ___________________          
gi|10140701            |                     _______________              
                        __________________________________________________
Query sequence:        |           |           |           |           |  | 208
                       0          50         100         150         200


Locus_ID                Frame 2 Hits
gi|541954              |  _______________________                         
gi|1771780             |  _______________________                         
gi|541953              |  _______________________                         
gi|2894306             |  _______________________                         
gi|279636              |  _______________________                         
gi|10180023            |  _______________________                         
gi|99772               |  _______________________                         
gi|99771               |  _______________________                         
gi|100599              |  _______________________                         
gi|82733               |  _______________________                         
gi|902525              |  _______________________                         
gi|8778573             |  _______________________                         
gi|1044940             |  _______________________                         
gi|3319208             |  _______________________                         
gi|7439601             |  _______________________                         
gi|4151082             |  _______________________                         
gi|1763015             |  _______________________                         
gi|4506713             |  _______________________                         
gi|600539              |  _______________________                         
gi|12728063            |  _______________________                         
gi|2144011             |  _______________________                         
gi|5531281             |  _______________________                         
gi|70657               |  _______________________                         
gi|340062              |   ______________________                         
gi|7493577             |  _______________________                         
gi|12043554            |  _______________________                         
gi|6323196             |  _______________________                         
gi|3265058             |  _______________________                         
gi|11275235            |  _______________________                         
gi|6690640             |  _______________________                         
gi|3152950             |  _______________________                         
gi|279635              |  _______________________                         
gi|4587234             |  _______________________                         
gi|1184755             |  _______________________                         
gi|70659               |   ______________________                         
gi|3047316             |  _______________________                         
gi|70660               |  _______________________                         
gi|167941              |  _______________________                         
gi|100981              |           ______________                         
gi|100598              |  ________________________________                
gi|2133278             |  ________________________                        
gi|10140701            |  _______________________                         
gi|1076678             |_______________________                           
gi|6692129             |  ______________________                          
gi|1362009             |  ______________________                          
gi|485518              |  _______________________________                 
gi|421929              |  ______________________                          
gi|6322043             |  _______________________________                 
gi|70642               |  ____________________                            
gi|11275233            |  ____________________                            
Prosite Hits:                   _______                                   
                        __________________________________________________
Query sequence:        |           |           |           |           |  | 208
                       0          50         100         150         200
__________________
Prosite hits:
   UBIQUITIN_1          Ubiquitin domain signature.              38..63
__________________


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 874 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|541954|pir||S40240  ubiquitin/ribosomal protein S27a fusion protein - white
            lupine >gi|438111|emb|CAA80334.1| (Z22613) ubiquitin extension
            protein [Lupinus albus]
            Length = 155

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:              _________                                 
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150
__________________

Annotated Domains:
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 6.0e-75, Sum P(2) = 6.0e-75
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 332 (116.9 bits), Expect = 6.0e-75, Sum P(2) = 6.0e-75
 Identities = 60/74 (81%), Positives = 65/74 (87%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHKHKKVKL +LQFYKVDDSGKVQ LRKECPNAECGAGTFMANHFDRH
Sbjct:    80 RKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRH 139

Query:   453 YCGKCGLTYFTKKA 494
             YCGKCG TY  +KA
Sbjct:   140 YCGKCGQTYVYQKA 153


 >gi|1771780|emb|CAA71132.1|  (Y10024) ubiquitin extension protein [Solanum
            tuberosum]
            Length = 156

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 1.2e-74, Sum P(2) = 1.2e-74
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 329 (115.8 bits), Expect = 1.2e-74, Sum P(2) = 1.2e-74
 Identities = 60/74 (81%), Positives = 65/74 (87%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHK KKVKL +LQFYKVDDSGKVQ LRKECPNAECGAGTFMANHFDRH
Sbjct:    80 RKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRH 139

Query:   453 YCGKCGLTYFTKKA 494
             YCGKCGLTY  +KA
Sbjct:   140 YCGKCGLTYVYQKA 153


 >gi|541953|pir||S40239  ubiquitin/ribosomal protein S27a fusion protein - white
            lupine >gi|438109|emb|CAA80333.1| (Z22612) ubiquitin extension
            protein [Lupinus albus]
            Length = 155

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:              _________                                 
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150
__________________

Annotated Domains:
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 328 (115.5 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
 Identities = 59/74 (79%), Positives = 64/74 (86%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHKHKKVKL +LQFYKVDDSGKVQ LRKECPN ECGAGTFMANHFDRH
Sbjct:    80 RKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRH 139

Query:   453 YCGKCGLTYFTKKA 494
             YCGKCG TY  +KA
Sbjct:   140 YCGKCGKTYVYQKA 153


 >gi|2894306|emb|CAA11268.1|  (AJ223329) ubiquitin extension protein [Nicotiana
            tabacum]
            Length = 156

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 328 (115.5 bits), Expect = 1.6e-74, Sum P(2) = 1.6e-74
 Identities = 60/74 (81%), Positives = 64/74 (86%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHK KKVKL +LQFYKVDDSGKVQ LRKECPNAECGAGTFMANHFDRH
Sbjct:    80 RKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRH 139

Query:   453 YCGKCGLTYFTKKA 494
             YCGKCGLTY   KA
Sbjct:   140 YCGKCGLTYVYNKA 153


 >gi|279636|pir||UQTO7A  ubiquitin / ribosomal protein S27a - tomato
            >gi|282979|pir||S25305 ubiquitin / ribosomal protein S27a - potato
            >gi|19397|emb|CAA41207.1| (X58253) ubiquitin [Lycopersicon
            esculentum] >gi|21601|emb|CAA77735.1| (Z11669) ubiquitin
            monomer/ribosomal protein [Solanum tuberosum]
            >gi|349055|gb|AAA19247.1| (L22576) ubiquitin/ribosomal fusion
            protein [Solanum tuberosum]
            Length = 156

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a homology  77..156
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 3.3e-74, Sum P(2) = 3.3e-74
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 325 (114.4 bits), Expect = 3.3e-74, Sum P(2) = 3.3e-74
 Identities = 59/74 (79%), Positives = 64/74 (86%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHK KKVKL +LQFYKVDD+GKVQ LRKECPNAECGAGTFMANHFDRH
Sbjct:    80 RKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRH 139

Query:   453 YCGKCGLTYFTKKA 494
             YCGKCGLTY   KA
Sbjct:   140 YCGKCGLTYVYNKA 153


 >gi|10180023|gb|AAG13985.1|AF298826_1  (AF298826) ubiquitin/ribosomal protein
            27a [Prunus avium]
            Length = 156

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 322 (113.3 bits), Expect = 6.8e-74, Sum P(2) = 6.8e-74
 Identities = 59/74 (79%), Positives = 64/74 (86%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHK KKVKL +LQFYK DDSGKVQ LRKECPNAECGAGTFMANHFDRH
Sbjct:    80 RKKKTYTKPKKIKHKKKKVKLAVLQFYKGDDSGKVQKLRKECPNAECGAGTFMANHFDRH 139

Query:   453 YCGKCGLTYFTKKA 494
             YCGKCGLTY  +KA
Sbjct:   140 YCGKCGLTYVYQKA 153


 >gi|99772|pir||D36571  ubiquitin / ribosomal protein S27a.2 - Arabidopsis
            thaliana >gi|166936|gb|AAA32907.1| (J05540) ubiquitin extension
            protein (UBQ6) [Arabidopsis thaliana] >gi|3522953|gb|AAC34235.1|
            (AC004411) ubiquitin extension protein (UBQ6) [Arabidopsis
            thaliana]
            Length = 157

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a homology  77..157
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 316 (111.2 bits), Expect = 2.9e-73, Sum P(2) = 2.9e-73
 Identities = 57/73 (78%), Positives = 63/73 (86%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHKHKKVKL +LQFYKVD SGKVQ LRKECPNA CGAGTFMA+HFDRH
Sbjct:    80 RKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRH 139

Query:   453 YCGKCGLTYFTKK 491
             YCGKCGLTY  +K
Sbjct:   140 YCGKCGLTYVYQK 152


 >gi|99771|pir||C36571  ubiquitin / ribosomal protein S27a.1 - Arabidopsis
            thaliana >gi|166934|gb|AAA32906.1| (J05539) ubiquitin extension
            protein (UBQ5) [Arabidopsis thaliana] >gi|6899935|emb|CAB71885.1|
            (AL138651) ubiquitin extension protein (UBQ5) [Arabidopsis
            thaliana]
            Length = 157

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a homology  77..157
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 3.7e-73, Sum P(2) = 3.7e-73
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 315 (110.9 bits), Expect = 3.7e-73, Sum P(2) = 3.7e-73
 Identities = 56/73 (76%), Positives = 63/73 (86%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHKHKKVKL +LQFYK+D SGKVQ LRKECPNA CGAGTFMA+HFDRH
Sbjct:    80 RKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRH 139

Query:   453 YCGKCGLTYFTKK 491
             YCGKCGLTY  +K
Sbjct:   140 YCGKCGLTYVYQK 152


 >gi|100599|pir||JH0227  ubiquitin / ribosomal protein S27a.2 - barley
            >gi|167075|gb|AAA62699.1| (M60176) ubiquitin [Hordeum vulgare]
            Length = 155

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   ______________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a-2         77..155
   Entrez               domain: ribosomal protein S27a homology  77..155
   Entrez               binding site: zinc (Cys)                 122
   Entrez               binding site: zinc (Cys)                 127
   Entrez               binding site: zinc (Cys)                 142
   Entrez               binding site: zinc (Cys)                 145
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 453 (159.5 bits), Expect = 9.8e-73, Sum P(2) = 9.8e-73
 Identities = 90/92 (97%), Positives = 91/92 (98%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQ 310
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK +
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKQK 92

 Score = 310 (109.1 bits), Expect = 9.8e-73, Sum P(2) = 9.8e-73
 Identities = 58/76 (76%), Positives = 65/76 (85%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDS-GKVQXLRKECPNAECGAGTFMANHFDR 449
             R++ T   P+K KHKHKKVKL +LQFYKVDDS GKV  LRKECPNA+CGAGTFMANHFDR
Sbjct:    80 RKKKTYTKPKKQKHKHKKVKLAVLQFYKVDDSTGKVTRLRKECPNADCGAGTFMANHFDR 139

Query:   450 HYCGKCGLTY-FTKKA 494
             HYCGKCGLTY + +KA
Sbjct:   140 HYCGKCGLTYVYNQKA 155


 >gi|82733|pir||JS0657  ubiquitin / ribosomal protein S27a - maize
            >gi|168651|gb|AAA33519.1| (M68937) ubiquitin fusion protein [Zea
            mays] >gi|902527|gb|AAA70105.1| (U29161) ubiquitin fusion protein
            [Zea mays] >gi|1589388|prf||2211240B ubiquitin fusion protein [Zea
            mays]
            Length = 155

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150
__________________

Annotated Domains:
   DOMO                 DM00160: UBIQUITIN                       1..75
   DOMO                 DM02466: RIBOSOMALPROTEINS27A            77..98
   DOMO                 DM00939: RIBOSOMALPROTEINS27A            100..153
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a homology  77..155
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 2.0e-72, Sum P(2) = 2.0e-72
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 308 (108.4 bits), Expect = 2.0e-72, Sum P(2) = 2.0e-72
 Identities = 57/76 (75%), Positives = 64/76 (84%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDS-GKVQXLRKECPNAECGAGTFMANHFDR 449
             R++ T   P+KIKHKHKKVKL +LQFYKVDD+ GKV  LRKECPN ECGAG FMANHFDR
Sbjct:    80 RKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDR 139

Query:   450 HYCGKCGLTY-FTKKA 494
             HYCGKCGLTY + +KA
Sbjct:   140 HYCGKCGLTYVYNQKA 155


 >gi|902525|gb|AAA70104.1|  (U29160) ubiquitin fusion protein [Zea mays]
            >gi|1589387|prf||2211240A ubiquitin fusion protein [Zea mays]
            Length = 155

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150

  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 2.3e-71, Sum P(2) = 2.3e-71
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 298 (104.9 bits), Expect = 2.3e-71, Sum P(2) = 2.3e-71
 Identities = 55/76 (72%), Positives = 63/76 (82%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDS-GKVQXLRKECPNAECGAGTFMANHFDR 449
             R++ T   P+K KHKHKKVKL +LQFYKVDD+  KV  LRKECPN+ECGAG FMANHFDR
Sbjct:    80 RKKKTYTKPKKTKHKHKKVKLSVLQFYKVDDTTSKVTRLRKECPNSECGAGVFMANHFDR 139

Query:   450 HYCGKCGLTY-FTKKA 494
             HYCGKCGLTY + +KA
Sbjct:   140 HYCGKCGLTYVYNQKA 155


 >gi|8778573|gb|AAF79581.1|AC007945_1  (AC007945) F28C11.5 [Arabidopsis thaliana]
            >gi|9295695|gb|AAF87001.1|AC005292_10 (AC005292) F26F24.28
            [Arabidopsis thaliana]
            Length = 156

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 452 (159.1 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
 Identities = 90/90 (100%), Positives = 90/90 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 90

 Score = 297 (104.5 bits), Expect = 2.9e-71, Sum P(2) = 2.9e-71
 Identities = 53/74 (71%), Positives = 60/74 (81%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKH HKKVKL +LQFYKVD SGKVQ L+KECP+  CG GTFMA+HFDRH
Sbjct:    80 RKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRH 139

Query:   453 YCGKCGLTYFTKKA 494
             YCGKCG TY  KKA
Sbjct:   140 YCGKCGTTYVFKKA 153


 >gi|1044940|emb|CAA63150.1|  (X92422) fusion gene [Zea mays]
            Length = 155

Frame  3 hits (HSPs):                           ________________________  
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150

  Plus Strand HSPs:

 Score = 442 (155.6 bits), Expect = 3.3e-70, Sum P(2) = 3.3e-70
 Identities = 88/90 (97%), Positives = 89/90 (98%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLV+RLRGGAKK KKKTYTKPKK
Sbjct:    61 IQKESTLHLVVRLRGGAKKPKKKTYTKPKK 90

 Score = 297 (104.5 bits), Expect = 3.3e-70, Sum P(2) = 3.3e-70
 Identities = 52/72 (72%), Positives = 60/72 (83%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDS-GKVQXLRKECPNAECGAGTFMANHF 443
             +  +++    P+KIKHKHKKVKL +LQFYKVDD+ GKV  LRK+CPNAEC AG FMANHF
Sbjct:    78 KKPKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKDCPNAECHAGVFMANHF 137

Query:   444 DRHYCGKCGLTY 479
             DRHYCGKCGLTY
Sbjct:   138 DRHYCGKCGLTY 149


 >gi|3319208|gb|AAC26159.1|  (U68751) ubiquitin-carboxyl extension [Daucus
            carota]
            Length = 143

Frame  3 hits (HSPs):                              _______________________
Frame  2 hits (HSPs):   ________________________________                  
                        __________________________________________________
Database sequence:     |                 |                |               | 143
                       0                50              100

  Plus Strand HSPs:

 Score = 448 (157.7 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
 Identities = 89/90 (98%), Positives = 89/90 (98%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKKTYTKPKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKTYTKPKK 90

 Score = 284 (100.0 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
 Identities = 50/64 (78%), Positives = 56/64 (87%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+K KHKH+KVKL +LQFYKVD+SGKVQ LRKECPN ECGAGTFMANHFDRH
Sbjct:    80 RKKKTYTKPKKTKHKHRKVKLAVLQFYKVDESGKVQRLRKECPNGECGAGTFMANHFDRH 139

Query:   453 YCGK 464
             YCGK
Sbjct:   140 YCGK 143


 >gi|7439601|pir||T04026  probable ubiquitin / ribosomal protein S27a - rice
            >gi|967985|gb|AAA74960.1| (L31941) ribosomal protein-linked
            ubiquitin [Oryza sativa]
            Length = 155

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150

  Plus Strand HSPs:

 Score = 429 (151.0 bits), Expect = 2.6e-68, Sum P(2) = 2.6e-68
 Identities = 86/90 (95%), Positives = 86/90 (95%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVES  TIDNVKAKIQDKEGIPPDQQR IFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESRHTIDNVKAKIQDKEGIPPDQQRFIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLH VLRLRGGAKKRKKKTYTKPKK
Sbjct:    61 IQKESTLHHVLRLRGGAKKRKKKTYTKPKK 90

 Score = 292 (102.8 bits), Expect = 2.6e-68, Sum P(2) = 2.6e-68
 Identities = 55/76 (72%), Positives = 63/76 (82%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDS-GKVQXLRKECPNAECGAGTFMANHFDR 449
             R++ T   P+KIKHKHKKVKL +LQFYKVDD+ GKV  LRKECPN +CGAGTFMANHFDR
Sbjct:    80 RKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNHDCGAGTFMANHFDR 139

Query:   450 HYCGKCGLTY-FTKKA 494
             HYC KC LTY + +KA
Sbjct:   140 HYCRKCRLTYVYNQKA 155


 >gi|4151082|emb|CAA76578.1|  (Y17004) ubiquitin [Suberites domuncula]
            Length = 154

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150

  Plus Strand HSPs:

 Score = 427 (150.3 bits), Expect = 7.8e-67, Sum P(2) = 7.8e-67
 Identities = 84/90 (93%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKNYTTPKK 90

 Score = 280 (98.6 bits), Expect = 7.8e-67, Sum P(2) = 7.8e-67
 Identities = 48/76 (63%), Positives = 61/76 (80%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIK K KKVKL +L++YKVDDSGK+Q LR+ECP A+CGAG FMA HFD
Sbjct:    78 KKRKKKNYTTPKKIKRKKKKVKLAVLKYYKVDDSGKIQRLRRECPGADCGAGIFMAAHFD 137

Query:   447 RHYCGKCGLTYFTKKA 494
             R YCGKCGLTY  KK+
Sbjct:   138 RQYCGKCGLTYVYKKS 153


 >gi|1763015|gb|AAC60279.1|  (U67931) ubiquitin/ribosomal protein [Gallus gallus]
            Length = 156

Frame  3 hits (HSPs):                           _________________________ 
Frame  2 hits (HSPs):   ______________________________                    
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 432 (152.1 bits), Expect = 5.4e-66, Sum P(2) = 5.4e-66
 Identities = 85/92 (92%), Positives = 90/92 (97%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQ 310
             IQKESTLHLVLRLRGGAKKRKKK+YT PKK++
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK 92

 Score = 267 (94.0 bits), Expect = 5.4e-66, Sum P(2) = 5.4e-66
 Identities = 45/75 (60%), Positives = 60/75 (80%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+K KHK KKVKL +L++YKVD++GK+  LR+ECP+ ECGAG FMA+HFD
Sbjct:    78 KKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSEECGAGVFMASHFD 137

Query:   447 RHYCGKCGLTY-FTK 488
             RHYCGKC LTY F K
Sbjct:   138 RHYCGKCCLTYCFNK 152


 >gi|4506713  ref|NP_002945.1| ribosomal protein S27a [Homo sapiens]
            >gi|70656|pir||UQHUR7 ubiquitin / ribosomal protein S27a, cytosolic
            [validated] - human >gi|37571|emb|CAA44911.1| (X63237) ubiquitin
            [Homo sapiens] >gi|243888|gb|AAB21188.1| (S79522) ubiquitin
            carboxyl extension protein, HUBCEP80 [human, Peptide, 156 aa] [Homo
            sapiens] >gi|1197091|dbj|BAA11843.1| (D83209) ubiquitin extention
            protein [Cavia porcellus] >gi|3885465|gb|AAC77907.1| (AF058700)
            ubiquitin-S27a fusion protein [Bos taurus]
            >gi|12655083|gb|AAH01392.1|AAH01392 (BC001392) Unknown (protein for
            MGC:1629) [Homo sapiens]
            Length = 156

Frame  3 hits (HSPs):                           _________________________ 
Frame  2 hits (HSPs):   ______________________________                    
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 432 (152.1 bits), Expect = 6.9e-66, Sum P(2) = 6.9e-66
 Identities = 85/92 (92%), Positives = 90/92 (97%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQ 310
             IQKESTLHLVLRLRGGAKKRKKK+YT PKK++
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK 92

 Score = 266 (93.6 bits), Expect = 6.9e-66, Sum P(2) = 6.9e-66
 Identities = 45/75 (60%), Positives = 60/75 (80%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+K KHK KKVKL +L++YKVD++GK+  LR+ECP+ ECGAG FMA+HFD
Sbjct:    78 KKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFD 137

Query:   447 RHYCGKCGLTY-FTK 488
             RHYCGKC LTY F K
Sbjct:   138 RHYCGKCCLTYCFNK 152


 >gi|600539|gb|AAA57047.1|  (M24507) ubiquitin [synthetic construct]
            Length = 157

Frame  3 hits (HSPs):                           _________________________ 
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 432 (152.1 bits), Expect = 6.9e-66, Sum P(2) = 6.9e-66
 Identities = 85/92 (92%), Positives = 90/92 (97%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQ 310
             IQKESTLHLVLRLRGGAKKRKKK+YT PKK++
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK 92

 Score = 266 (93.6 bits), Expect = 6.9e-66, Sum P(2) = 6.9e-66
 Identities = 45/75 (60%), Positives = 60/75 (80%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+K KHK KKVKL +L++YKVD++GK+  LR+ECP+ ECGAG FMA+HFD
Sbjct:    78 KKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFD 137

Query:   447 RHYCGKCGLTY-FTK 488
             RHYCGKC LTY F K
Sbjct:   138 RHYCGKCCLTYCFNK 152


 >gi|12728063  ref|XP_002255.2| ribosomal protein S27a [Homo sapiens]
            Length = 168

Frame  3 hits (HSPs):                             _______________________ 
Frame  2 hits (HSPs):      ____________________________                   
                        __________________________________________________
Database sequence:     |              |              |              |     | 168
                       0             50            100            150

  Plus Strand HSPs:

 Score = 432 (152.1 bits), Expect = 6.9e-66, Sum P(2) = 6.9e-66
 Identities = 85/92 (92%), Positives = 90/92 (97%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    13 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 72

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQ 310
             IQKESTLHLVLRLRGGAKKRKKK+YT PKK++
Sbjct:    73 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK 104

 Score = 266 (93.6 bits), Expect = 6.9e-66, Sum P(2) = 6.9e-66
 Identities = 45/75 (60%), Positives = 60/75 (80%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+K KHK KKVKL +L++YKVD++GK+  LR+ECP+ ECGAG FMA+HFD
Sbjct:    90 KKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFD 149

Query:   447 RHYCGKCGLTY-FTK 488
             RHYCGKC LTY F K
Sbjct:   150 RHYCGKCCLTYCFNK 164


 >gi|2144011|pir||I52328  ubiquitin / ribosomal protein S27a, cytosolic
            [validated] - rat >gi|1050756|emb|CAA57432.1| (X81839) fusion
            protein: ubiquitin (bases 43_513); ribosomal protein S27a (bases
            217_532) [Rattus norvegicus]
            Length = 156

Frame  3 hits (HSPs):                           _________________________ 
Frame  2 hits (HSPs):   ______________________________                    
Annotated Domains:              _________                                 
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150
__________________

Annotated Domains:
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 432 (152.1 bits), Expect = 1.8e-65, Sum P(2) = 1.8e-65
 Identities = 85/92 (92%), Positives = 90/92 (97%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQ 310
             IQKESTLHLVLRLRGGAKKRKKK+YT PKK++
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNK 92

 Score = 262 (92.2 bits), Expect = 1.8e-65, Sum P(2) = 1.8e-65
 Identities = 44/75 (58%), Positives = 59/75 (78%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+K KHK KKVKL +L++YKVD++GK+  LR+ECP+ ECGAG FM +HFD
Sbjct:    78 KKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFD 137

Query:   447 RHYCGKCGLTY-FTK 488
             RHYCGKC LTY F K
Sbjct:   138 RHYCGKCCLTYCFNK 152


 >gi|5531281|emb|CAB50894.1|  (AJ243802) ubiquitin fusion protein [Kluyveromyces
            lactis]
            Length = 150

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   ______________________________                    
                        __________________________________________________
Database sequence:     |                |                |                | 150
                       0               50              100

  Plus Strand HSPs:

 Score = 431 (151.7 bits), Expect = 5.4e-64, Sum P(2) = 5.4e-64
 Identities = 85/90 (94%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKVYTTPKK 90

 Score = 249 (87.7 bits), Expect = 5.4e-64, Sum P(2) = 5.4e-64
 Identities = 44/75 (58%), Positives = 56/75 (74%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KI+HKHKKVKL +L +YKVDD GKV  LRKECPN  CG G F+ANH D
Sbjct:    78 KKRKKKVYTTPKKIRHKHKKVKLAVLNYYKVDDEGKVAKLRKECPN--CGPGIFLANHGD 135

Query:   447 RHYCGKCGLTYFTKK 491
             R YCGKC  T+ T+K
Sbjct:   136 RFYCGKCHSTFATQK 150


 >gi|70657|pir||UQFFR7  ubiquitin / ribosomal protein S27a - fruit fly
            (Drosophila melanogaster) >gi|630880|pir||S46214
            ubiquitin-80-amino-acid fusion-protein - fruit fly (Drosophila
            melanogaster) >gi|158755|gb|AAA28998.1| (M22536) ubiquitin-hybrid
            protein precursor [Drosophila melanogaster]
            >gi|7297689|gb|AAF52941.1| (AE003628) RpS27A gene product
            [Drosophila melanogaster]
            Length = 156

Frame  3 hits (HSPs):                           _________________________ 
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a homology  77..156
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 425 (149.6 bits), Expect = 5.4e-64, Sum P(2) = 5.4e-64
 Identities = 84/90 (93%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKK Y+ PKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKNYSTPKK 90

 Score = 255 (89.8 bits), Expect = 5.4e-64, Sum P(2) = 5.4e-64
 Identities = 43/75 (57%), Positives = 58/75 (77%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHK KKVKL +L++YKVD++GK+  LR+ECP   CGAG FMA H D
Sbjct:    78 KKRKKKNYSTPKKIKHKRKKVKLAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHED 137

Query:   447 RHYCGKCGLTY-FTK 488
             RHYCGKC LT+ F+K
Sbjct:   138 RHYCGKCNLTFVFSK 152


 >gi|340062|gb|AAA36788.1|  (M10939) pro-ubiquitin [Homo sapiens]
            Length = 152

Frame  3 hits (HSPs):                           _________________________ 
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150

  Plus Strand HSPs:

 Score = 412 (145.0 bits), Expect = 8.9e-64, Sum P(2) = 8.9e-64
 Identities = 81/88 (92%), Positives = 86/88 (97%), Frame = +2

Query:    47 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 226
             VKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKE
Sbjct:     1 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 60

Query:   227 STLHLVLRLRGGAKKRKKKTYTKPKKDQ 310
             STLHLVLRLRGGAKKRKKK+YT PKK++
Sbjct:    61 STLHLVLRLRGGAKKRKKKSYTTPKKNK 88

 Score = 266 (93.6 bits), Expect = 8.9e-64, Sum P(2) = 8.9e-64
 Identities = 45/75 (60%), Positives = 60/75 (80%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+K KHK KKVKL +L++YKVD++GK+  LR+ECP+ ECGAG FMA+HFD
Sbjct:    74 KKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMASHFD 133

Query:   447 RHYCGKCGLTY-FTK 488
             RHYCGKC LTY F K
Sbjct:   134 RHYCGKCCLTYCFNK 148


 >gi|7493577|pir||T39061  ubiquitin-like protein - fission yeast
            (Schizosaccharomyces pombe) >gi|2330875|emb|CAB11297.1| (Z98603)
            ubiquitin fusion protein [Schizosaccharomyces pombe]
            Length = 150

Frame  3 hits (HSPs):                             _______________________ 
Frame  2 hits (HSPs):   ______________________________                    
                        __________________________________________________
Database sequence:     |                |                |                | 150
                       0               50              100

  Plus Strand HSPs:

 Score = 436 (153.5 bits), Expect = 3.0e-63, Sum P(2) = 3.0e-63
 Identities = 86/90 (95%), Positives = 88/90 (97%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKKTYT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKK 90

 Score = 237 (83.4 bits), Expect = 3.0e-63, Sum P(2) = 3.0e-63
 Identities = 43/67 (64%), Positives = 55/67 (82%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T  +P+KIKHKHKKV+L +L++YKV+D G V+ LR+ECPN  CGA TFMANH DR 
Sbjct:    80 RKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRL 137

Query:   453 YCGKCGLT 476
             YCG+C LT
Sbjct:   138 YCGRCHLT 145


 >gi|12043554|emb|CAC19767.1|  (AL512496) ubiquitin-like protein identical to
            spac6g10.11c. [Schizosaccharomyces pombe]
            Length = 150

Frame  3 hits (HSPs):                             _______________________ 
Frame  2 hits (HSPs):   ______________________________                    
                        __________________________________________________
Database sequence:     |                |                |                | 150
                       0               50              100

  Plus Strand HSPs:

 Score = 436 (153.5 bits), Expect = 3.0e-63, Sum P(2) = 3.0e-63
 Identities = 86/90 (95%), Positives = 88/90 (97%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKKTYT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKTYTTPKK 90

 Score = 237 (83.4 bits), Expect = 3.0e-63, Sum P(2) = 3.0e-63
 Identities = 43/67 (64%), Positives = 55/67 (82%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T  +P+KIKHKHKKV+L +L++YKV+D G V+ LR+ECPN  CGA TFMANH DR 
Sbjct:    80 RKKKTYTTPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRL 137

Query:   453 YCGKCGLT 476
             YCG+C LT
Sbjct:   138 YCGRCHLT 145


 >gi|6323196  ref|NP_013268.1| Ribosomal protein S31 (S37) (YS24); Rps31p
            [Saccharomyces cerevisiae] >gi|70658|pir||UQBYR7 ubiquitin /
            ribosomal protein S31.e, cytosolic - yeast  (Saccharomyces
            cerevisiae) >gi|4732|emb|CAA29197.1| (X05730) ubiquitin (AA 1-152)
            [Saccharomyces cerevisiae] >gi|577206|gb|AAB67466.1| (U17246)
            Ubi3p: Ubiquitin fused to ribosomal protein S27A [Saccharomyces
            cerevisiae]
            Length = 152

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   ______________________________                    
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150

  Plus Strand HSPs:

 Score = 431 (151.7 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
 Identities = 85/90 (94%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKVYTTPKK 90

 Score = 236 (83.1 bits), Expect = 1.3e-62, Sum P(2) = 1.3e-62
 Identities = 41/71 (57%), Positives = 51/71 (71%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHKHKKVKL +L +YKVD  GKV  LR+EC N  CGAG F+ANH D
Sbjct:    78 KKRKKKVYTTPKKIKHKHKKVKLAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKD 137

Query:   447 RHYCGKCGLTY 479
             R YCGKC   Y
Sbjct:   138 RLYCGKCHSVY 148


 >gi|3265058|gb|AAC24705.1|  (AF060232) monoubiquitin/carboxy extension protein
            fusion [Botryotinia fuckeliana]
            Length = 155

Frame  3 hits (HSPs):                           ________________________  
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150

  Plus Strand HSPs:

 Score = 434 (152.8 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
 Identities = 86/90 (95%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKVYTTPKK 90

 Score = 231 (81.3 bits), Expect = 2.1e-62, Sum P(2) = 2.1e-62
 Identities = 38/71 (53%), Positives = 52/71 (73%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHK KK KL +L++YKVD  GK++ LR+ECP  +CGAG FMA   D
Sbjct:    78 KKRKKKVYTTPKKIKHKRKKTKLAVLKYYKVDGDGKIERLRRECPTPDCGAGVFMAAMHD 137

Query:   447 RHYCGKCGLTY 479
             R YCG+C LTY
Sbjct:   138 RQYCGRCHLTY 148


 >gi|11275235|pir||T46664  ubiquitin/S27a fusion protein [imported] - Neurospora
            crassa >gi|402242|gb|AAA56880.1| (U01220) ubiquitin/S27a fusion
            protein [Neurospora crassa] >gi|402244|gb|AAA03351.1| (U01221)
            ubiquitin/ribosomal protein S27a fusion protein [Neurospora crassa]
            Length = 154

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150

  Plus Strand HSPs:

 Score = 429 (151.0 bits), Expect = 2.6e-62, Sum P(2) = 2.6e-62
 Identities = 85/90 (94%), Positives = 86/90 (95%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKVYTTPKK 90

 Score = 235 (82.7 bits), Expect = 2.6e-62, Sum P(2) = 2.6e-62
 Identities = 40/76 (52%), Positives = 54/76 (71%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHK KK KL +L++YKVD  GK+  LR+ECPN  CGAG FMA   D
Sbjct:    78 KKRKKKVYTTPKKIKHKRKKTKLAVLKYYKVDSDGKIDRLRRECPNETCGAGVFMAAMQD 137

Query:   447 RHYCGKCGLTYFTKKA 494
             R YCG+C LTY  +K+
Sbjct:   138 RQYCGRCHLTYVFEKS 153


 >gi|6690640|gb|AAF24230.1|AF175521_1  (AF175521) UBI1 [Aspergillus nidulans]
            Length = 154

Frame  3 hits (HSPs):                            _______________________  
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150

  Plus Strand HSPs:

 Score = 430 (151.4 bits), Expect = 7.0e-62, Sum P(2) = 7.0e-62
 Identities = 85/90 (94%), Positives = 86/90 (95%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKVYTTPKK 90

 Score = 230 (81.0 bits), Expect = 7.0e-62, Sum P(2) = 7.0e-62
 Identities = 39/71 (54%), Positives = 53/71 (74%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHK KK KL +L++YKVD  GK++ LR+ECP+ ECGAG FMA   +
Sbjct:    78 KKRKKKVYTTPKKIKHKRKKTKLAVLKYYKVDGDGKIERLRRECPSPECGAGIFMAAMQN 137

Query:   447 RHYCGKCGLTY 479
             R YCGKC LTY
Sbjct:   138 RQYCGKCHLTY 148


 >gi|3152950|emb|CAA75692.1|  (Y15608) ubiquitin fusion protein [Candida
            albicans]
            Length = 151

Frame  3 hits (HSPs):                            ________________________ 
Frame  2 hits (HSPs):   ______________________________                    
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150

  Plus Strand HSPs:

 Score = 431 (151.7 bits), Expect = 1.8e-61, Sum P(2) = 1.8e-61
 Identities = 85/90 (94%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKVYTTPKK 90

 Score = 225 (79.2 bits), Expect = 1.8e-61, Sum P(2) = 1.8e-61
 Identities = 39/70 (55%), Positives = 51/70 (72%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHKH+K KL +L +YKVD+ G V+ LR+ECP   CGAG FMAN  D
Sbjct:    78 KKRKKKVYTTPKKIKHKHRKHKLAVLTYYKVDNEGNVERLRRECPAPTCGAGIFMANMKD 137

Query:   447 RHYCGKCGLT 476
             R YCGKC LT
Sbjct:   138 RQYCGKCHLT 147


 >gi|279635|pir||UQWO7A  ubiquitin / ribosomal protein S27a - tobacco hornworm
            >gi|9725|emb|CAA37599.1| (X53524) ubiquitin-fusion protein (AA
            1-155) [Manduca sexta]
            Length = 155

Frame  3 hits (HSPs):                           _________________________ 
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a homology  77..155
   Entrez               region: zinc finger CCCC motif           121..144
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 141..146
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
   PROSITE              ZINC_FINGER_C2H2: Zinc finger, C2H2 type 121..145
__________________


  Plus Strand HSPs:

 Score = 425 (149.6 bits), Expect = 4.8e-61, Sum P(2) = 4.8e-61
 Identities = 84/90 (93%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKK Y+ PKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKNYSTPKK 90

 Score = 227 (79.9 bits), Expect = 4.8e-61, Sum P(2) = 4.8e-61
 Identities = 40/74 (54%), Positives = 53/74 (71%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHK KKVKL +L+FYKVD++GK+  LR+EC   +CGAG FMA   D
Sbjct:    78 KKRKKKNYSTPKKIKHKKKKVKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMED 137

Query:   447 RHYCGKCGLTYFTK 488
             RHYCGKC  T   K
Sbjct:   138 RHYCGKCHSTMVFK 151


 >gi|4587234|dbj|BAA76675.1|  (AB021973) ubiquitin/79aa fusion protein [Bombyx
            mori]
            Length = 155

Frame  3 hits (HSPs):                           _________________________ 
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150

  Plus Strand HSPs:

 Score = 420 (147.8 bits), Expect = 1.6e-60, Sum P(2) = 1.6e-60
 Identities = 83/90 (92%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGGAKKRKKK Y+ PKK
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKNYSTPKK 90

 Score = 227 (79.9 bits), Expect = 1.6e-60, Sum P(2) = 1.6e-60
 Identities = 40/74 (54%), Positives = 53/74 (71%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHK KKVKL +L+FYKVD++GK+  LR+EC   +CGAG FMA   D
Sbjct:    78 KKRKKKNYSTPKKIKHKKKKVKLAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMED 137

Query:   447 RHYCGKCGLTYFTK 488
             RHYCGKC  T   K
Sbjct:   138 RHYCGKCHSTMVFK 151


 >gi|1184755|gb|AAA97886.1|  (U45317) ubiquitin c-terminal extension protein
            UBIcep86 [Litomosoides sigmodontis]
            Length = 162

Frame  3 hits (HSPs):                          _______________________    
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |              |              |    | 162
                       0              50            100            150

  Plus Strand HSPs:

 Score = 429 (151.0 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
 Identities = 84/92 (91%), Positives = 89/92 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEV+SSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVDSSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQ 310
             IQKESTLHLVLRLRGG KKRKKK YT PKK++
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKVYTTPKKNK 92

 Score = 216 (76.0 bits), Expect = 2.6e-60, Sum P(2) = 2.6e-60
 Identities = 36/70 (51%), Positives = 52/70 (74%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+K KHK KKVKL +L++YKVD++GK+  LRKEC +  CG G FMA+H +
Sbjct:    78 KKRKKKVYTTPKKNKHKKKKVKLAVLKYYKVDENGKITRLRKECASPSCGGGVFMASHQN 137

Query:   447 RHYCGKCGLT 476
             R+YCGKC  T
Sbjct:   138 RYYCGKCHQT 147


 >gi|70659|pir||UQNCR  ubiquitin / ribosomal protein S27a - Neurospora crassa
            (fragment) >gi|3086|emb|CAA33390.1| (X15338) UBI 3 fusion protein
            (149 AA) [Neurospora crassa]
            Length = 149

Frame  3 hits (HSPs):                           __________________________
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology (fragment) #l 1..71
   Entrez               domain: ribosomal protein S27a homology  72..149
   Entrez               region: zinc finger CCCC motif           116..140
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 22..47
__________________


  Plus Strand HSPs:

 Score = 405 (142.6 bits), Expect = 5.5e-60, Sum P(2) = 5.5e-60
 Identities = 80/85 (94%), Positives = 81/85 (95%), Frame = +2

Query:    50 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 229
             KTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKES
Sbjct:     1 KTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 60

Query:   230 TLHLVLRLRGGAKKRKKKTYTKPKK 304
             TLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 TLHLVLRLRGGGKKRKKKVYTTPKK 85

 Score = 237 (83.4 bits), Expect = 5.5e-60, Sum P(2) = 5.5e-60
 Identities = 40/76 (52%), Positives = 55/76 (72%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHK KK KL +L++YKVD  GK++ LR+ECPN  CGAG FMA   D
Sbjct:    73 KKRKKKVYTTPKKIKHKRKKTKLAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQD 132

Query:   447 RHYCGKCGLTYFTKKA 494
             R YCG+C LTY  +K+
Sbjct:   133 RQYCGRCHLTYVFEKS 148


 >gi|3047316|gb|AAC13690.1|  (AF056624) ubiquitin fusion protein [Magnaporthe
            grisea]
            Length = 154

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150

  Plus Strand HSPs:

 Score = 431 (151.7 bits), Expect = 4.9e-57, Sum P(2) = 4.9e-57
 Identities = 85/90 (94%), Positives = 87/90 (96%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             IQKESTLHLVLRLRGG KKRKKK YT PKK
Sbjct:    61 IQKESTLHLVLRLRGGGKKRKKKVYTTPKK 90

 Score = 183 (64.4 bits), Expect = 4.9e-57, Sum P(2) = 4.9e-57
 Identities = 35/76 (46%), Positives = 47/76 (61%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+KIKHKHKKVKL +L   +   + ++      CPN  CGAG FMA   D
Sbjct:    78 KKRKKKVYTTPKKIKHKHKKVKLAVLSTTRSTVTERLSASAASCPNETCGAGIFMAAMQD 137

Query:   447 RHYCGKCGLTY-FTKK 491
             R YCG+C LTY F KK
Sbjct:   138 RQYCGRCHLTYVFDKK 153


 >gi|70660|pir||UQDOR7  ubiquitin / ribosomal protein S27a - slime mold
            (Dictyostelium discoideum)
            Length = 154

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a homology  78..154
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 142..147
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 403 (141.9 bits), Expect = 3.0e-55, Sum P(2) = 3.0e-55
 Identities = 80/90 (88%), Positives = 84/90 (93%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIF+KTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFIKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGA-KKRKKKTYTKPK 301
             IQKESTLHLVLRLRGG  KK+KKKTY  PK
Sbjct:    61 IQKESTLHLVLRLRGGGGKKKKKKTYATPK 90

 Score = 194 (68.3 bits), Expect = 3.0e-55, Sum P(2) = 3.0e-55
 Identities = 32/74 (43%), Positives = 50/74 (67%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+ +K K +KVKL +L++YK D++GK++ + +ECP   CGAG FMA H +
Sbjct:    79 KKKKKKTYATPKVLKRKLRKVKLAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHAN 138

Query:   447 RHYCGKCGLTYFTK 488
             R YCGKC  T   K
Sbjct:   139 RQYCGKCHSTLVKK 152


 >gi|167941|gb|AAA33264.1|  (M23750) ubiquitin [Dictyostelium discoideum]
            Length = 153

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |                |               |               | | 153
                       0               50             100             150

  Plus Strand HSPs:

 Score = 398 (140.1 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
 Identities = 79/89 (88%), Positives = 83/89 (93%), Frame = +2

Query:    38 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 217
             QIF+KTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct:     1 QIFIKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 60

Query:   218 QKESTLHLVLRLRGGA-KKRKKKTYTKPK 301
             QKESTLHLVLRLRGG  KK+KKKTY  PK
Sbjct:    61 QKESTLHLVLRLRGGGGKKKKKKTYATPK 89

 Score = 194 (68.3 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
 Identities = 32/74 (43%), Positives = 50/74 (67%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFD 446
             +  +++   +P+ +K K +KVKL +L++YK D++GK++ + +ECP   CGAG FMA H +
Sbjct:    78 KKKKKKTYATPKVLKRKLRKVKLAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHAN 137

Query:   447 RHYCGKCGLTYFTK 488
             R YCGKC  T   K
Sbjct:   138 RQYCGKCHSTLVKK 151


 >gi|100981|pir||S25001  ubiquitin/ribosomal protein S27a fusion protein - garden
            asparagus >gi|16081|emb|CAA47346.1| (X66875) Ubiquitin /Ribosomal
            peptide [Asparagus officinalis]
            Length = 118

Frame  3 hits (HSPs):                     _______________________________ 
Frame  2 hits (HSPs):   _______________________                           
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                    |        | 118
                       0                   50                  100
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology (fragment) #l 1..40
   Entrez               domain: ribosomal protein S27a homology  41..118
__________________


  Plus Strand HSPs:

 Score = 305 (107.4 bits), Expect = 8.9e-54, Sum P(2) = 8.9e-54
 Identities = 56/73 (76%), Positives = 62/73 (84%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDSGKVQXLRKECPNAECGAGTFMANHFDRH 452
             R++ T   P+KIKHK KKVKL +LQFYKVDD+GKV  LRKECPNAECGAGTFMANH DRH
Sbjct:    44 RKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVIRLRKECPNAECGAGTFMANHKDRH 103

Query:   453 YCGKCGLTYFTKK 491
             YCGKCGLTY  +K
Sbjct:   104 YCGKCGLTYVYQK 116

 Score = 278 (97.9 bits), Expect = 8.9e-54, Sum P(2) = 8.9e-54
 Identities = 54/54 (100%), Positives = 54/54 (100%), Frame = +2

Query:   143 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKK 304
             PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKK
Sbjct:     1 PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKK 54


 >gi|100598|pir||JH0226  ubiquitin / ribosomal protein S27a.1 - barley
            >gi|167073|gb|AAA62698.1| (M60175) ubiquitin [Hordeum vulgare]
            Length = 155

Frame  3 hits (HSPs):                            _________________________
Frame  2 hits (HSPs):   ________________________________________          
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |                | | 155
                       0              50             100              150
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein S27a-1         77..155
   Entrez               domain: ribosomal protein S27a homology  77..155
   Entrez               binding site: zinc (Cys)                 122
   Entrez               binding site: zinc (Cys)                 127
   Entrez               binding site: zinc (Cys)                 142
   Entrez               binding site: zinc (Cys)                 145
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 454 (159.8 bits), Expect = 5.8e-42, P = 5.8e-42
 Identities = 99/128 (77%), Positives = 106/128 (82%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQAQAQEGQARHSPVLQGRRFWKSAXAPQG 394
             IQKESTLHLVLRLRGGAKKRKKKTYTKPKK + + ++ +     VLQ   F+K   A   
Sbjct:    61 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKQKHKHKKVKLA---VLQ---FYKVDDATGK 114

Query:   395 VPQRRMWC 418
             V + R  C
Sbjct:   115 VTRLRKEC 122

 Score = 307 (108.1 bits), Expect = 2.2e-26, P = 2.2e-26
 Identities = 57/76 (75%), Positives = 65/76 (85%), Frame = +3

Query:   276 RRRPT-PSPRKIKHKHKKVKLGILQFYKVDDS-GKVQXLRKECPNAECGAGTFMANHFDR 449
             R++ T   P+K KHKHKKVKL +LQFYKVDD+ GKV  LRKECPNA+CGAGTFMANHFDR
Sbjct:    80 RKKKTYTKPKKQKHKHKKVKLAVLQFYKVDDATGKVTRLRKECPNADCGAGTFMANHFDR 139

Query:   450 HYCGKCGLTY-FTKKA 494
             HYCGKCGLTY + +KA
Sbjct:   140 HYCGKCGLTYVYNQKA 155


 >gi|2133278|pir||S62680  ubiquitin/ribosomal protein S27a fusion protein -
            Emericella nidulans
            Length = 99

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:                   _____________                        
                        __________________________________________________
Database sequence:     |         |         |         |         |          | 99
                       0        20        40        60        80
__________________

Annotated Domains:
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
 Identities = 84/96 (87%), Positives = 88/96 (91%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYTKPKKDQAQAQ 322
             IQKEST +LVLRLRGG KKRKKK YT PKK +  A+
Sbjct:    61 IQKESTFNLVLRLRGGGKKRKKKVYTTPKKIKHSAK 96


 >gi|10140701|gb|AAG13535.1|AC023240_8  (AC023240) putative ubiquitin/ribosomal
            protein S27a fusion protein [Oryza sativa]
            Length = 147

Frame  3 hits (HSPs):                               ______________________
Frame  2 hits (HSPs):    ________________________________                 
                        __________________________________________________
Database sequence:     |                |                |                | 147
                       0               50              100

  Plus Strand HSPs:

 Score = 290 (102.1 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
 Identities = 60/95 (63%), Positives = 70/95 (73%), Frame = +2

Query:    29 VTMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 208
             V  QIFVK LTGKT  L +E SDT+++VK K+ DKEG+PPDQQ LIF G QL+DG TL  
Sbjct:     4 VMTQIFVKGLTGKTTALRMEPSDTVESVKVKLVDKEGLPPDQQPLIFQGHQLDDGHTLIY 63

Query:   209 YNIQKESTLHLVLRLRGGA---KKRKKKTYTKPKK 304
             Y IQ+ESTLHL+ R+ GG    KKRKKK Y  PKK
Sbjct:    64 YGIQEESTLHLLGRICGGGGGNKKRKKKAYATPKK 98

 Score = 142 (50.0 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
 Identities = 27/62 (43%), Positives = 40/62 (64%), Frame = +3

Query:   267 RSARRRPTPSPRKIKHKHKKVKLGILQFYKVDD-SGKVQXLRKECPNAEC-GAGTFMANH 440
             +  +++   +P+K KH+H+K +L +L+ Y+VDD  GKV+ LR  CPN EC   G  MA H
Sbjct:    86 KKRKKKAYATPKKGKHEHRKEELAVLRHYRVDDVMGKVERLRLMCPNPECKDVGALMAKH 145

Query:   441 FD 446
              D
Sbjct:   146 HD 147


 >gi|1076678|pir||S42643  ubiquitin / ribosomal protein S27a - potato (fragment)
            Length = 126

Frame  2 hits (HSPs):              _______________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                   |                   |          | 126
                       0                  50                 100
__________________

Annotated Domains:
   Entrez               domain: amino-terminal extension peptide 1..45
   Entrez               domain: ubiquitin homology #label UBH    46..121
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 72..97
__________________


  Plus Strand HSPs:

 Score = 407 (143.3 bits), Expect = 5.6e-37, P = 5.6e-37
 Identities = 85/97 (87%), Positives = 88/97 (90%), Frame = +2

Query:     2 ETLASHPPCVT-----MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 166
             ETL +  P ++     MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI
Sbjct:    30 ETLKAAAPLISLLQAKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 89

Query:   167 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRK 277
             FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRK
Sbjct:    90 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRK 126


 >gi|6692129|gb|AAF24594.1|AC007654_10  (AC007654) T19E23.13 [Arabidopsis
            thaliana]
            Length = 156

Frame  2 hits (HSPs):   _________________________________________________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 156
                       0              50             100             150

  Plus Strand HSPs:

 Score = 383 (134.8 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 80/86 (93%), Positives = 80/86 (93%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYT 292
             IQKESTLHLVLRLRGG    K KT T
Sbjct:    61 IQKESTLHLVLRLRGGTMI-KVKTLT 85

 Score = 246 (86.6 bits), Expect = 6.4e-20, P = 6.4e-20
 Identities = 49/77 (63%), Positives = 61/77 (79%), Frame = +2

Query:    32 TMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
             TM I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY
Sbjct:    77 TM-IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY 135

Query:   212 NIQKESTLHLVLRLRGG 262
             NI+  S LHLVL LRGG
Sbjct:   136 NIEGGSVLHLVLALRGG 152


 >gi|1362009|pir||S55242  polyubiquitin 2 - Arabidopsis thaliana
            Length = 154

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150
__________________

Annotated Domains:
   DOMO                 DM00160: UBIQUITIN                       1..73
   DOMO                 DM00160: UBIQUITIN                       75..151
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ubiquitin homology #label UBH2   77..152
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 103..128
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 383 (134.8 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 80/86 (93%), Positives = 80/86 (93%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYT 292
             IQKESTLHLVLRLRGG    K KT T
Sbjct:    61 IQKESTLHLVLRLRGGTMI-KVKTLT 85

 Score = 238 (83.8 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 48/77 (62%), Positives = 60/77 (77%), Frame = +2

Query:    32 TMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY 211
             TM I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DY
Sbjct:    77 TM-IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDY 135

Query:   212 NIQKESTLHLVLRLRGG 262
              I+  S LHLVL LRGG
Sbjct:   136 AIEGGSVLHLVLALRGG 152


 >gi|485518|pir||S33633  ubiquitin / ribosomal protein CEP52 - rice
            >gi|303857|dbj|BAA02154.1| (D12629) ubiquitin/ribosomal polyprotein
            [Oryza sativa]
            Length = 129

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                   |           | 129
                       0                 50                 100
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH    1..76
   Entrez               domain: ribosomal protein CEP52 homology 77..128
   Entrez               region: zinc finger CCCC motif           96..115
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________


  Plus Strand HSPs:

 Score = 382 (134.5 bits), Expect = 2.5e-34, P = 2.5e-34
 Identities = 85/127 (66%), Positives = 96/127 (75%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTYT-KPKKDQAQAQEGQARHSPVLQGRRFWKSAXAPQ 391
             IQKESTLHLVLRLRGG  +   +    K  +D+   ++  AR  P     R  K   + Q
Sbjct:    61 IQKESTLHLVLRLRGGIIEPSLQALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQ 120

Query:   392 GVPQRRM 412
               P++++
Sbjct:   121 LRPKKKI 127


 >gi|421929|pir||S34285  polyubiquitin - tomato >gi|312160|emb|CAA51679.1|
            (X73156) ubiquitin [Lycopersicon esculentum]
            Length = 534

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:        ___    ___    ____   ____   ____    ___    ___  
                        __________________________________________________
Database sequence:     |             |             |              |       | 534
                       0           150           300            450
__________________

Annotated Domains:
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 103..128
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 179..204
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 255..280
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 331..356
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 407..432
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 483..508
__________________


  Plus Strand HSPs:

 Score = 381 (134.1 bits), Expect = 3.2e-34, P = 3.2e-34
 Identities = 80/90 (88%), Positives = 81/90 (90%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query:   215 IQKESTLHLVLRLRGG----AKKRKKKTYT 292
             IQKESTLHLVLRLRGG     K   +KT T
Sbjct:   213 IQKESTLHLVLRLRGGMQIFVKTLTRKTIT 242

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:    61 IQKESTLHLVLRLRGG 76

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   137 IQKESTLHLVLRLRGG 152

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   365 IQKESTLHLVLRLRGG 380

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   441 IQKESTLHLVLRLRGG 456

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 516

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   517 IQKESTLHLVLRLRGG 532

 Score = 371 (130.6 bits), Expect = 3.6e-33, P = 3.6e-33
 Identities = 75/76 (98%), Positives = 75/76 (98%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLT KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   229 MQIFVKTLTRKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   289 IQKESTLHLVLRLRGG 304


 >gi|6322043  ref|NP_012118.1| Ribosomal protein L40A; Rpl40ap [Saccharomyces
            cerevisiae] >gi|6322947 ref|NP_013020.1| Ribosomal protein L40B;
            Rpl40bp [Saccharomyces cerevisiae] >gi|83594|pir||A29456 ubiquitin
            / ribosomal protein CEP52, cytosolic - yeast  (Saccharomyces
            cerevisiae) >gi|4728|emb|CAA29195.1| (X05728) ubiquitin
            [Saccharomyces cerevisiae] >gi|4730|emb|CAA29196.1| (X05729)
            ubiquitin [Saccharomyces cerevisiae] >gi|450555|emb|CAA51949.1|
            (X73541) UBI2 [Saccharomyces cerevisiae] >gi|486585|emb|CAA82173.1|
            (Z28319) ORF YKR094c [Saccharomyces cerevisiae]
            >gi|559522|emb|CAA86130.1| (Z38059) ubi1, len: 128, CAI: 0.74,
            spliced, S34428 S34428 UBIQUITIN-52 AMINO ACID FUSION PROTEIN
            [Saccharomyces cerevisiae]
            Length = 128

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 128
                       0                  50                100

  Plus Strand HSPs:

 Score = 381 (134.1 bits), Expect = 3.2e-34, P = 3.2e-34
 Identities = 84/127 (66%), Positives = 96/127 (75%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60

Query:   215 IQKESTLHLVLRLRGGAKKRKKKTY-TKPKKDQAQAQEGQARHSPVLQGRRFWKSAXAPQ 391
             IQKESTLHLVLRLRGG  +   K   +K   D++  ++  AR  P     R  K     Q
Sbjct:    61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCDKSVCRKCYARLPPRATNCRKRKCGHTNQ 120

Query:   392 GVPQRRM 412
               P++++
Sbjct:   121 LRPKKKL 127


 >gi|70642|pir||UQMUM  polyubiquitin 5 - Arabidopsis thaliana
            >gi|17678|emb|CAA31331.1| (X12853) polyubiquitin (AA 1 - 382)
            [Arabidopsis thaliana] >gi|987519|gb|AAB53929.1| (U33014)
            polyubiquitin [Arabidopsis thaliana] >gi|226499|prf||1515347A
            poly-ubiquitin [Arabidopsis thaliana]
            Length = 382

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 382
                       0                 150                 300
__________________

Annotated Domains:
   Entrez               domain: ubiquitin homology #label UBH1   1..76
   Entrez               domain: ubiquitin homology #label UBH2   77..152
   Entrez               domain: ubiquitin homology #label UBH3   153..228
   Entrez               domain: ubiquitin homology #label UBH4   229..304
   Entrez               domain: ubiquitin homology #label UBH5   305..380
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 103..128
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 179..204
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 255..280
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 27..52
   PROSITE              UBIQUITIN_1: Ubiquitin domain signature. 331..356
__________________


  Plus Strand HSPs:

 Score = 380 (133.8 bits), Expect = 4.0e-34, P = 4.0e-34
 Identities = 76/77 (98%), Positives = 77/77 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 364

Query:   215 IQKESTLHLVLRLRGGA 265
             IQKESTLHLVLRLRGG+
Sbjct:   365 IQKESTLHLVLRLRGGS 381

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:    61 IQKESTLHLVLRLRGG 76

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   137 IQKESTLHLVLRLRGG 152

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   213 IQKESTLHLVLRLRGG 228

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   289 IQKESTLHLVLRLRGG 304


 >gi|11275233|pir||T48345  polyubiquitin (ubq3) - Arabidopsis thaliana
            >gi|7413601|emb|CAB86091.1| (AL163002) polyubiquitin (ubq3)
            [Arabidopsis thaliana] >gi|9757775|dbj|BAB08384.1| (AB005240)
            polyubiquitin [Arabidopsis thaliana]
            Length = 306

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |        |       |       |       |       |       | | 306
                       0       50     100     150     200     250     300

  Plus Strand HSPs:

 Score = 380 (133.8 bits), Expect = 4.0e-34, P = 4.0e-34
 Identities = 76/77 (98%), Positives = 77/77 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query:   215 IQKESTLHLVLRLRGGA 265
             IQKESTLHLVLRLRGG+
Sbjct:   289 IQKESTLHLVLRLRGGS 305

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:     1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:    61 IQKESTLHLVLRLRGG 76

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   137 IQKESTLHLVLRLRGG 152

 Score = 379 (133.4 bits), Expect = 5.2e-34, P = 5.2e-34
 Identities = 76/76 (100%), Positives = 76/76 (100%), Frame = +2

Query:    35 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 214
             MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:   153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 212

Query:   215 IQKESTLHLVLRLRGG 262
             IQKESTLHLVLRLRGG
Sbjct:   213 IQKESTLHLVLRLRGG 228


WARNING:  HSPs involving 874 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.98

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.331   0.138   0.446  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.331   0.144   0.467  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.332   0.143   0.483  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.341   0.154   0.496  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.350   0.151   0.572  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.331   0.145   0.507  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      206       191       10.  76 3  12 22  0.12    34
                                                    31  0.098   38
   +2      0      207       192       10.  76 3  12 22  0.12    34
                                                    31  0.098   38
   +1      0      207       193       10.  76 3  12 22  0.12    34
                                                    31  0.099   38
   -1      0      207       192       10.  76 3  12 22  0.12    34
                                                    31  0.098   38
   -2      0      207       193       10.  76 3  12 22  0.12    34
                                                    31  0.099   38
   -3      0      206       193       10.  76 3  12 22  0.12    34
                                                    31  0.099   38


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  924
  No. of states in DFA:  598 (59 KB)
  Total size of DFA:  220 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  258.24u 1.17s 259.41t  Elapsed: 00:00:43
  Total cpu time:  258.30u 1.21s 259.51t  Elapsed: 00:00:43
  Start:  Mon Oct  1 20:27:28 2001   End:  Mon Oct  1 20:28:11 2001

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000