Kingdom | Category | Genus/Species | Count |
---|---|---|---|
  |   | 130 | |
Archaea |   |   | 18 |
  |   | 130 | |
  | Crenarchaeota |   | 1 |
  |   | Pyrobaculum calidifontis (pcl) | 1 |
  | Euryarchaeota |   | 16 |
  |   | Haloquadratum walsbyi (hwa) | 1 |
  |   | Candidatus Methanoregula boonei (mbn) | 1 |
  |   | Methanococcoides burtonii (mbu) | 1 |
  |   | Methanoculleus marisnigri (mem) | 3 |
  |   | Methanococcus jannaschii (mja) | 2 |
  |   | Methanocorpusculum labreanum (mla) | 1 |
  |   | Methanosarcina mazei (mma) | 1 |
  |   | Methanococcus maripaludis S2 (mmp) | 2 |
  |   | Methanococcus maripaludis C7 (mmz) | 1 |
  |   | Picrophilus torridus (pto) | 2 |
  |   | Uncultured methanogenic archaeon RC-I (rci) | 1 |
  | Nanoarchaeota |   | 1 |
  |   | Nanoarchaeum equitans (neq) | 1 |
Bacteria |   |   | 1657 |
  | Acidobacteria |   | 2 |
  |   | Solibacter usitatus (sus) | 2 |
  | Actinobacteria |   | 16 |
  |   | Arthrobacter aurescens (aau) | 1 |
  |   | Acidothermus cellulolyticus (ace) | 1 |
  |   | Corynebacterium glutamicum R (cgt) | 1 |
  |   | Corynebacterium jeikeium (cjk) | 1 |
  |   | Mycobacterium smegmatis (msm) | 3 |
  |   | Mycobacterium ulcerans (mul) | 1 |
  |   | Nocardia farcinica (nfa) | 2 |
  |   | Rhodococcus sp. RHA1 (rha) | 2 |
  |   | Streptomyces coelicolor (sco) | 1 |
  |   | Saccharopolyspora erythraea (sen) | 3 |
  | Bacteroides |   | 42 |
  |   | Bacteroides fragilis YCH46 (bfr) | 1 |
  |   | Bacteroides thetaiotaomicron (bth) | 1 |
  |   | Bacteroides vulgatus (bvu) | 3 |
  |   | Cytophaga hutchinsonii (chu) | 3 |
  |   | Flavobacterium johnsoniae (fjo) | 12 |
  |   | Flavobacterium psychrophilum (fps) | 6 |
  |   | Gramella forsetii (gfo) | 8 |
  |   | Parabacteroides distasonis (pdi) | 5 |
  |   | Salinibacter ruber (sru) | 3 |
  | Chlamydia |   | 3 |
  |   | Chlamydia trachomatis serovar A (cta) | 1 |
  |   | Candidatus Protochlamydia amoebophila (pcu) | 2 |
  | Cyanobacteria |   | 25 |
  |   | Anabaena sp. PCC7120 (ana) | 3 |
  |   | Anabaena variabilis (ava) | 4 |
  |   | Gloeobacter violaceus (gvi) | 2 |
  |   | Prochlorococcus marinus MIT 9301 (pmg) | 1 |
  |   | Synechococcus elongatus PCC6301 (syc) | 1 |
  |   | Synechococcus sp. CC9902 (sye) | 1 |
  |   | Synechocystis sp. PCC6803 (syn) | 4 |
  |   | Synechococcus sp. RCC307 (syr) | 1 |
  |   | Thermosynechococcus elongatus (tel) | 1 |
  |   | Trichodesmium erythraeum (ter) | 7 |
  | Deinococcus-Thermus |   | 5 |
  |   | Deinococcus radiodurans (dra) | 2 |
  |   | Thermus thermophilus HB27 (tth) | 2 |
  |   | Thermus thermophilus HB8 (ttj) | 1 |
  | Firmicutes |   | 120 |
  |   | Alkaliphilus metalliredigens (amt) | 2 |
  |   | Alkaliphilus oremlandii (aoe) | 5 |
  |   | Bacillus cereus ATCC 10987 (bca) | 1 |
  |   | Bacillus cereus ATCC 14579 (bce) | 3 |
  |   | Bacillus clausii (bcl) | 2 |
  |   | Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) | 1 |
  |   | Bacillus cereus ZK (bcz) | 2 |
  |   | Bacillus halodurans (bha) | 3 |
  |   | Bacillus licheniformis DSM13 (bld) | 3 |
  |   | Bacillus subtilis (bsu) | 3 |
  |   | Bacillus thuringiensis Al Hakam (btl) | 3 |
  |   | Clostridium acetobutylicum (cac) | 2 |
  |   | Clostridium beijerinckii (cbe) | 8 |
  |   | Clostridium botulinum F (cbf) | 3 |
  |   | Clostridium botulinum A Hall (cbh) | 2 |
  |   | Clostridium botulinum A (cbo) | 2 |
  |   | Clostridium difficile (cdf) | 3 |
  |   | Carboxydothermus hydrogenoformans (chy) | 4 |
  |   | Clostridium kluyveri (ckl) | 2 |
  |   | Clostridium novyi (cno) | 4 |
  |   | Clostridium perfringens 13 (cpe) | 2 |
  |   | Clostridium perfringens ATCC 13124 (cpf) | 5 |
  |   | Clostridium perfringens SM101 (cpr) | 4 |
  |   | Caldicellulosiruptor saccharolyticus (csc) | 1 |
  |   | Clostridium tetani E88 (ctc) | 4 |
  |   | Clostridium thermocellum (cth) | 1 |
  |   | Desulfotomaculum reducens (drm) | 6 |
  |   | Enterococcus faecalis (efa) | 2 |
  |   | Geobacillus kaustophilus (gka) | 3 |
  |   | Geobacillus thermodenitrificans (gtn) | 3 |
  |   | Lactobacillus acidophilus (lac) | 1 |
  |   | Lactobacillus brevis (lbr) | 1 |
  |   | Lactobacillus delbrueckii ATCC BAA-365 (lbu) | 1 |
  |   | Lactobacillus casei (lca) | 1 |
  |   | Lactobacillus gasseri (lga) | 1 |
  |   | Listeria innocua (lin) | 1 |
  |   | Lactococcus lactis subsp. lactis IL1403 (lla) | 1 |
  |   | Lactococcus lactis subsp. cremoris MG1363 (llm) | 1 |
  |   | Listeria monocytogenes EGD-e (lmo) | 1 |
  |   | Lactobacillus plantarum (lpl) | 1 |
  |   | Lactobacillus salivarius (lsl) | 2 |
  |   | Listeria welshimeri SLCC5334 (lwe) | 1 |
  |   | Mesoplasma florum (mfl) | 1 |
  |   | Mycoplasma gallisepticum (mga) | 1 |
  |   | Mycoplasma penetrans (mpe) | 2 |
  |   | Oceanobacillus iheyensis (oih) | 1 |
  |   | Pelotomaculum thermopropionicum (pth) | 1 |
  |   | Staphylococcus epidermidis RP62A (ser) | 1 |
  |   | Streptococcus gordonii (sgo) | 1 |
  |   | Staphylococcus haemolyticus (sha) | 2 |
  |   | Staphylococcus saprophyticus (ssp) | 2 |
  |   | Streptococcus suis 98HAH33 (ssv) | 1 |
  |   | Thermoanaerobacter tengcongensis (tte) | 5 |
  | Fusobacteria |   | 6 |
  |   | Fusobacterium nucleatum (fnu) | 6 |
  | Green nonsulfur bacteria |   | 7 |
  |   | Dehalococcoides sp. BAV1 (deb) | 4 |
  |   | Dehalococcoides sp. CBDB1 (deh) | 1 |
  |   | Roseiflexus castenholzii DSM13941 (rca) | 1 |
  |   | Roseiflexus sp. RS-1 (rrs) | 1 |
  | Green sulfur bacteria |   | 9 |
  |   | Chlorobium chlorochromatii (cch) | 3 |
  |   | Chlorobium phaeobacteroides (cph) | 3 |
  |   | Chlorobaculum tepidum (cte) | 1 |
  |   | Pelodictyon luteolum (plt) | 2 |
  | Hyperthermophilic bacteria |   | 3 |
  |   | Fervidobacterium nodosum (fno) | 1 |
  |   | Thermosipho melanesiensis (tme) | 1 |
  |   | Thermotoga petrophila (tpt) | 1 |
  | Planctomyces |   | 6 |
  |   | Rhodopirellula baltica (rba) | 6 |
  | Proteobacteria |   | 1410 |
  |   | Alcanivorax borkumensis (abo) | 15 |
  |   | Arcobacter butzleri (abu) | 11 |
  |   | Acinetobacter baumannii (acb) | 4 |
  |   | Acinetobacter sp. ADP1 (aci) | 15 |
  |   | Acidiphilium cryptum JF-5 (acr) | 1 |
  |   | Alkalilimnicola ehrlichei (aeh) | 18 |
  |   | Aeromonas hydrophila (aha) | 10 |
  |   | Acidovorax sp. JS42 (ajs) | 2 |
  |   | Actinobacillus pleuropneumoniae (apl) | 9 |
  |   | Aeromonas salmonicida (asa) | 7 |
  |   | Actinobacillus succinogenes (asu) | 6 |
  |   | Agrobacterium tumefaciens C58 (Cereon) (atc) | 4 |
  |   | Azorhizobium caulinodans (azc) | 6 |
  |   | Azoarcus sp. BH72 (azo) | 3 |
  |   | Buchnera aphidicola Bp (bab) | 1 |
  |   | Burkholderia cepacia (bam) | 6 |
  |   | Bdellovibrio bacteriovorus (bba) | 5 |
  |   | Bartonella bacilliformis (bbk) | 1 |
  |   | Bordetella bronchiseptica (bbr) | 3 |
  |   | Bradyrhizobium sp. BTAi1 (bbt) | 2 |
  |   | Burkholderia cenocepacia HI2424 (bch) | 3 |
  |   | Bartonella henselae (bhe) | 2 |
  |   | Bradyrhizobium japonicum (bja) | 2 |
  |   | Brucella suis (bms) | 1 |
  |   | Candidatus Blochmannia pennsylvanicus (bpn) | 1 |
  |   | Bradyrhizobium sp. ORS278 (bra) | 2 |
  |   | Burkholderia thailandensis (bte) | 1 |
  |   | Burkholderia sp. 383 (bur) | 2 |
  |   | Burkholderia vietnamiensis (bvi) | 4 |
  |   | Burkholderia xenovorans (bxe) | 5 |
  |   | Coxiella burnetii Dugway 7E9-12 (cbd) | 58 |
  |   | Coxiella burnetii RSA 493 (cbu) | 17 |
  |   | Campylobacter concisus 13826 (cco) | 3 |
  |   | Caulobacter crescentus (ccr) | 1 |
  |   | Campylobacter curvus (ccv) | 1 |
  |   | Campylobacter fetus (cff) | 3 |
  |   | Campylobacter hominis ATCC BAA-381 (cha) | 1 |
  |   | Campylobacter jejuni 81116 (cju) | 9 |
  |   | Citrobacter koseri ATCC BAA-895 (cko) | 6 |
  |   | Colwellia psychrerythraea (cps) | 31 |
  |   | Chromohalobacter salexigens (csa) | 14 |
  |   | Chromobacterium violaceum (cvi) | 16 |
  |   | Dechloromonas aromatica (dar) | 3 |
  |   | Dichelobacter nodosus (dno) | 2 |
  |   | Candidatus Desulfococcus oleovorans (dol) | 2 |
  |   | Desulfotalea psychrophila (dps) | 2 |
  |   | Desulfovibrio vulgaris DP4 (dvl) | 2 |
  |   | Azoarcus sp. EbN1 (eba) | 3 |
  |   | Erwinia carotovora (eca) | 5 |
  |   | Escherichia coli CFT073 (UPEC) (ecc) | 2 |
  |   | Ehrlichia chaffeensis (ech) | 1 |
  |   | Escherichia coli K-12 W3110 (ecj) | 1 |
  |   | Ehrlichia canis (ecn) | 2 |
  |   | Escherichia coli APEC O1 (ecv) | 1 |
  |   | Escherichia coli E24377A (ecw) | 1 |
  |   | Escherichia coli HS (ecx) | 1 |
  |   | Erythrobacter litoralis (eli) | 2 |
  |   | Enterobacter sp. 638 (ent) | 4 |
  |   | Ehrlichia ruminantium Gardel (erg) | 1 |
  |   | Enterobacter sakazakii (esa) | 4 |
  |   | Granulobacter bethesdensis (gbe) | 2 |
  |   | Geobacter metallireducens (gme) | 1 |
  |   | Gluconobacter oxydans (gox) | 1 |
  |   | Geobacter uraniumreducens (gur) | 2 |
  |   | Helicobacter acinonychis (hac) | 1 |
  |   | Herminiimonas arsenicoxydans (har) | 1 |
  |   | Hahella chejuensis (hch) | 36 |
  |   | Haemophilus ducreyi (hdu) | 2 |
  |   | Halorhodospira halophila (hha) | 3 |
  |   | Helicobacter hepaticus (hhe) | 2 |
  |   | Haemophilus influenzae (serotype d) (hin) | 1 |
  |   | Haemophilus influenzae PittEE (hip) | 2 |
  |   | Haemophilus influenzae PittGG (hiq) | 2 |
  |   | Haemophilus influenzae 86-028NP (nontypeable) (hit) | 2 |
  |   | Hyphomonas neptunium (hne) | 2 |
  |   | Helicobacter pylori HPAG1 (hpa) | 1 |
  |   | Helicobacter pylori 26695 (hpy) | 1 |
  |   | Haemophilus somnus (hso) | 10 |
  |   | Idiomarina loihiensis (ilo) | 26 |
  |   | Klebsiella pneumoniae (kpn) | 4 |
  |   | Lawsonia intracellularis (lip) | 1 |
  |   | Legionella pneumophila Corby (lpc) | 45 |
  |   | Legionella pneumophila Lens (lpf) | 28 |
  |   | Legionella pneumophila Philadelphia 1 (lpn) | 24 |
  |   | Legionella pneumophila Paris (lpp) | 35 |
  |   | Magnetospirillum magneticum (mag) | 2 |
  |   | Marinobacter aquaeolei (maq) | 22 |
  |   | Methylococcus capsulatus (mca) | 13 |
  |   | Mesorhizobium sp. BNC1 (mes) | 3 |
  |   | Methylobacillus flagellatus (mfa) | 4 |
  |   | Magnetococcus sp. MC-1 (mgm) | 2 |
  |   | Mesorhizobium loti (mlo) | 1 |
  |   | Maricaulis maris (mmr) | 1 |
  |   | Minibacterium massiliensis (mms) | 7 |
  |   | Marinomonas sp. MWYL1 (mmw) | 28 |
  |   | Mannheimia succiniciproducens (msu) | 9 |
  |   | Myxococcus xanthus (mxa) | 2 |
  |   | Novosphingobium aromaticivorans (nar) | 3 |
  |   | Nitrosomonas eutropha (net) | 2 |
  |   | Nitrosomonas europaea (neu) | 3 |
  |   | Neisseria gonorrhoeae (ngo) | 3 |
  |   | Nitratiruptor sp. SB155-2 (nis) | 4 |
  |   | Neisseria meningitidis Z2491 (serogroup A) (nma) | 5 |
  |   | Neisseria meningitidis FAM18 (nmc) | 2 |
  |   | Neisseria meningitidis MC58 (serogroup B) (nme) | 1 |
  |   | Nitrosospira multiformis (nmu) | 6 |
  |   | Nitrosococcus oceani (noc) | 16 |
  |   | Ochrobactrum anthropi (oan) | 1 |
  |   | Orientia tsutsugamushi (ots) | 1 |
  |   | Pseudomonas aeruginosa PAO1 (pae) | 1 |
  |   | Pseudomonas aeruginosa PA7 (pap) | 4 |
  |   | Psychrobacter arcticum (par) | 1 |
  |   | Pseudoalteromonas atlantica (pat) | 26 |
  |   | Pseudomonas aeruginosa UCBPP-PA14 (pau) | 5 |
  |   | Pelobacter carbinolicus (pca) | 5 |
  |   | Psychrobacter cryohalolentis (pcr) | 3 |
  |   | Paracoccus denitrificans (pde) | 1 |
  |   | Pseudomonas entomophila (pen) | 3 |
  |   | Pseudomonas fluorescens Pf-5 (pfl) | 9 |
  |   | Pseudomonas fluorescens PfO-1 (pfo) | 7 |
  |   | Pseudoalteromonas haloplanktis (pha) | 28 |
  |   | Psychromonas ingrahamii (pin) | 17 |
  |   | Parvibaculum lavamentivorans (pla) | 4 |
  |   | Photorhabdus luminescens (plu) | 14 |
  |   | Pasteurella multocida (pmu) | 7 |
  |   | Pseudomonas mendocina (pmy) | 12 |
  |   | Polaromonas naphthalenivorans (pna) | 32 |
  |   | Polynucleobacter sp. QLW-P1DMWA-1 (pnu) | 5 |
  |   | Polaromonas sp. JS666 (pol) | 3 |
  |   | Pelobacter propionicus (ppd) | 2 |
  |   | Pseudomonas putida F1 (ppf) | 5 |
  |   | Photobacterium profundum (ppr) | 16 |
  |   | Pseudomonas putida KT2440 (ppu) | 1 |
  |   | Psychrobacter sp. PRwf-1 (prw) | 9 |
  |   | Pseudomonas stutzeri (psa) | 12 |
  |   | Pseudomonas syringae pv. syringae B728a (psb) | 3 |
  |   | Pseudomonas syringae pv. phaseolicola 1448A (psp) | 2 |
  |   | Pseudomonas syringae pv. tomato DC3000 (pst) | 7 |
  |   | Candidatus Pelagibacter ubique (pub) | 3 |
  |   | Rickettsia bellii (rbe) | 1 |
  |   | Rickettsia bellii OSU 85-389 (rbo) | 2 |
  |   | Roseobacter denitrificans (rde) | 3 |
  |   | Ralstonia eutropha H16 (reh) | 2 |
  |   | Rhizobium etli (ret) | 3 |
  |   | Ralstonia eutropha JMP134 (reu) | 5 |
  |   | Rickettsia felis (rfe) | 81 |
  |   | Rhizobium leguminosarum (rle) | 1 |
  |   | Candidatus Ruthia magnifica (rma) | 7 |
  |   | Ralstonia metallidurans (rme) | 3 |
  |   | Rhodopseudomonas palustris HaA2 (rpb) | 2 |
  |   | Rhodopseudomonas palustris BisB18 (rpc) | 2 |
  |   | Rhodopseudomonas palustris BisA53 (rpe) | 3 |
  |   | Rhodospirillum rubrum (rru) | 4 |
  |   | Ralstonia solanacearum (rso) | 5 |
  |   | Rhodobacter sphaeroides 2.4.1 (rsp) | 1 |
  |   | Syntrophus aciditrophicus (sat) | 2 |
  |   | Shewanella amazonensis (saz) | 6 |
  |   | Shewanella baltica OS155 (sbl) | 4 |
  |   | Shewanella baltica OS185 (sbm) | 7 |
  |   | Shigella boydii (sbo) | 1 |
  |   | Saccharophagus degradans (sde) | 20 |
  |   | Shewanella denitrificans (sdn) | 6 |
  |   | Shigella dysenteriae (sdy) | 3 |
  |   | Salmonella enterica serovar Choleraesuis (sec) | 2 |
  |   | Shigella flexneri 301 (serotype 2a) (sfl) | 1 |
  |   | Shewanella frigidimarina (sfr) | 5 |
  |   | Syntrophobacter fumaroxidans (sfu) | 5 |
  |   | Shigella flexneri 2457T (serotype 2a) (sfx) | 1 |
  |   | Sodalis glossinidius (sgl) | 3 |
  |   | Shewanella sp. MR-4 (she) | 2 |
  |   | Shewanella sp. MR-7 (shm) | 1 |
  |   | Shewanella sp. ANA-3 (shn) | 5 |
  |   | Shewanella sp. W3-18-1 (shw) | 6 |
  |   | Silicibacter pomeroyi (sil) | 1 |
  |   | Silicibacter sp. TM1040 (sit) | 3 |
  |   | Shewanella loihica (slo) | 11 |
  |   | Sinorhizobium medicae (smd) | 1 |
  |   | Sinorhizobium meliloti (sme) | 2 |
  |   | Shewanella oneidensis (son) | 5 |
  |   | Shewanella putrefaciens (spc) | 3 |
  |   | Serratia proteamaculans (spe) | 14 |
  |   | Shewanella pealeana (spl) | 14 |
  |   | Salmonella enterica serovar Paratyphi A (spt) | 1 |
  |   | Shewanella sediminis (sse) | 8 |
  |   | Shigella sonnei (ssn) | 1 |
  |   | Salmonella typhimurium LT2 (stm) | 3 |
  |   | Salmonella enterica serovar Typhi Ty2 (stt) | 1 |
  |   | Salmonella enterica serovar Typhi CT18 (sty) | 1 |
  |   | Sulfurovum sp. NBC37-1 (sun) | 7 |
  |   | Sphingomonas wittichii (swi) | 2 |
  |   | Thiobacillus denitrificans (tbd) | 3 |
  |   | Thiomicrospira crunogena (tcx) | 28 |
  |   | Thiomicrospira denitrificans (tdn) | 4 |
  |   | Vibrio cholerae O1 (vch) | 4 |
  |   | Vibrio cholerae O395 (vco) | 10 |
  |   | Verminephrobacter eiseniae (vei) | 1 |
  |   | Vibrio fischeri (vfi) | 13 |
  |   | Vibrio harveyi (vha) | 7 |
  |   | Candidatus Vesicomyosocius okutanii (vok) | 4 |
  |   | Vibrio parahaemolyticus (vpa) | 19 |
  |   | Vibrio vulnificus CMCP6 (vvu) | 7 |
  |   | Vibrio vulnificus YJ016 (vvy) | 10 |
  |   | Wigglesworthia glossinidia (wbr) | 3 |
  |   | Wolbachia wMel (wol) | 3 |
  |   | Wolinella succinogenes (wsu) | 10 |
  |   | Xanthomonas axonopodis (xac) | 1 |
  |   | Xanthobacter autotrophicus (xau) | 1 |
  |   | Xanthomonas campestris pv. campestris 8004 (xcb) | 2 |
  |   | Xylella fastidiosa Temecula1 (xft) | 1 |
  |   | Xanthomonas oryzae MAFF311018 (xom) | 1 |
  |   | Yersinia enterocolitica (yen) | 12 |
  |   | Yersinia pseudotuberculosis IP31758 (ypi) | 6 |
  |   | Yersinia pestis Pestoides (ypp) | 2 |
  |   | Zymomonas mobilis (zmo) | 1 |
  | Spirochete |   | 3 |
  |   | Leptospira borgpetersenii L550 (lbl) | 1 |
  |   | Treponema denticola (tde) | 2 |
Eukaryotes |   |   | 22 |
  | Animals |   | 3 |
  |   | Danio rerio (zebrafish) (dre) | 1 |
  |   | Monodelphis domestica (opossum) (mdo) | 1 |
  |   | Nematostella vectensis (sea anemone) (nve) | 1 |
  | Plants |   | 2 |
  |   | Arabidopsis thaliana (thale cress) (ath) | 1 |
  |   | Ostreococcus lucimarinus (olu) | 1 |
  | Protists |   | 17 |
  |   | Dictyostelium discoideum (ddi) | 1 |
  |   | Entamoeba histolytica (ehi) | 1 |
  |   | Plasmodium falciparum (pfa) | 11 |
  |   | Plasmodium yoelii (pyo) | 1 |
  |   | Tetrahymena thermophila (tet) | 1 |
  |   | Trichomonas vaginalis (tva) | 2 |
NULL |   |   | 172 |
TOTAL |   |   | 1999 |
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