pCRM PCE8215

Region plotRegion plot detailDotplot
Region plotRegion plot detailDotplot
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CRM:
PCE8215
Overlaps:
0
Reference:
0

D.mel fasta:
dmel unflanked
pCRM region:
genomic region
Chrom arm:
2L.3C
pCRM start:
1,262,811
pCRM end:
1,263,598
pCRM len:
788

D.pse fasta:
dpse unflanked
dpse arm:
3,212,334
dpse start:
100,556
dpse end:
101,584
dpse len:
1,029

Flanked D.mel fasta:
dmel flanked
Flanked D.pse fasta:
dpse flanked
LAGAN alignment (readable):
alignment
LAGAN alignment (mfa):
alignment

D.mel binding site xml:
xml

overall site conservation z-score:
5.4

percent iden:
64.6%

D.mel sites:
11
D.pse sites:
10
Aligned sites:
7
Aligned + preserved sites:
9

D.mel site dens:
14.0
D.pse site dens:
9.7
Aligned site dens:
8.9
Aligned + preserved site dens:
11.4

pCRM position relative to 5' gene:
within_intron
pCRM position 5' gene relative:
+4320
5' gene CG:
CG5423
5' gene:
robo3
5' Gap/pair-rule annotation:
5' gene insitu:
5' gene flybase:
robo3 flybase
5' gene start:
1,258,491
5' gene end:
1,295,501
5' gene txl start:
1,258,556

pCRM position 3' gene relative:
+4320
pCRM position relative to 3' gene:
within_intron
3' gene CG:
CG5423
3' gene:
robo3
3' Gap/pair-rule annotation:
3' gene insitu:
3' gene flybase:
robo3 flybase
3' gene start:
1,258,491
3' gene end:
1,295,501
3' gene txl start:
1,258,556

Additional Gap/pair-rule gene within 20kb:
Gap/pair-rule annotation:
pCRM relative position: