IV. CATALOGUE OF GENE SYMBOLS FOR WHEAT
1995 Supplement
-------------------------
R.A. McIntosh*, G.E. Hart**, K.M Devos***, and M.D.
Gale***.
*Plant Breeding Institute, The University of Sydney,
107 Cobbitty Rd., Cobbitty, N.S.W., Australia, 2570.
**Department of Soil & Crop Sciences, Texas A&M
University, College Station, Texas, USA, 77843.
***John Innes Centre, Norwich Research Park, Colney,
Norwich, Norfolk NR4 7UH, UK.
keywords: USA, 1995
The most recent edition of the Catalogue (9441)
will appear in the Proceedings of the 8th International Wheat Genetics
Symposium held in Beijing, China, 1993. The revised Guidelines for
Nomenclature of Biochemical/Molecular Loci in Wheat and Related Species
(which include nomenclature guidelines for QTLs) were included with
the 1994 Supplement. This Supplement has been offered to
the editors of the Annual Wheat Newsletter and the Wheat Information
Service for inclusion in their respective reports.
-------------------------
Genetic nomenclature proposal.
A nomenclature proposal for AFLP loci has been
received from Marc Zabeau at Keygene with the format 'XxyzAN1N2N3, where
'X' is the usual symbol for a DNA marker of unknown function; 'xyz'
is the usual laboratory designator (e.g., kg for Keygene); A is
a single uppercase letter denoting the rare-cutter enzyme used, e.g.,
P for PstI, etc.; N1 nd N2 are two-digit numbers identifying standard
one, two, or three base-pair extensions (standard lists will be provided
by Keygene); and N3 is a three-digit number corresponding to the molecular
weight of the fragment.
The foregoing should be considered only as a
proposal at this time, because no AFLPs yet appear in the catalogue. Comments
regarding the proposal are welcomed and should be sent to the authors
of the catalogue.
Additions and revisions to symbols list:
Aba Abscisic acid-induced
C1 Colored aleurone (maize clone)
Esi Early-salt induced
Ger Germin
Glb3 (1-3,1-4)-beta-Glucanase
Glb33 (1-3)-beta-Glucanase isozyme G3
Glb35 (1-3)-beta-Glucanase isozyme G5
Gli-1-1 Omega gliadins
Gli-1-2 Gamma gliadins
Glob 7S Globulin
Ica Chymotrypsin inhibitor
Isa alpha-Amylase and subtilisin inhibitor
Lhcb Light-harvesting antenna complex for photosystem II (CAB)
P Long glumes (polonicum)
Pdk Pyruvate orthophosphate dikinase (Pdk replaces Ppdk)
Phy Phytochrome
Pki Protein kinase inhibitor
Plc Plastocyanin
Ppc Phosphoenolpyruvate carboxylase (Ppc replaces Pepc)
Psif Protein synthesis initiation factor
Sus Sucrose synthase (maize clone)
vg Variegated red seed coat color
Additions to Laboratory Designators list.
A list of laboratory designators that have appeared
in the literature, including those listed below, is available
electronically via the Internet Gopher from host greengenes.cit.cornell.edu,
port 70, menu "Grains files to browse" / "Reserved
Laboratory Designators for DNA Probes, Primers and Markers".
abc (Barley cDNA* clones)
Kleinhofs, A.
North American* Barley*
Genome Mapping Project
Department of Agronomy & Soils
Washington State University
Pullman, WA 99164 USA
ak Kleinhofs, A.* (see abc)
bcd (Barley cDNA clones*)
Sorrells, M.E.
Department of Plant Breeding and Biometry
Cornell University
252 Emerson Hall
Ithaca, NY 14853 USA
bgl Lane, B.G.*
Faculty of Medicine
University of Toronto
Department of Biochemistry
Medical Sciences Building
Toronto, Ontario M5S 1A8
CANADA
bnl Burr, B.
Brookhaven National Laboratory*
Biology Department
Upton, NY 11973 USA
bzh Dudler, R.
Institut fur Pflanzenbiologie*
Universitat Zurich
Zollikerstrasse 107
CH-8008 Zurich, SWITZERLAND
cdo (Oat cDNA clones)
Sorrels, M.E. (see bcd)
csb Appels, R.
Division of Plant Industry Production
Institute of Plant and Processing
CSIRO*, GPO Box 1600
Canberra, ACT 2601 AUSTRALIA
csc Chandler, P.*
Division of Plant Industry
Institute of Plant Production and Processing
CSIRO*, GPO Box 1600
Canberra, ACT 2601 AUSTRALIA
csd Dennis, L.*
Division of Plant Industry
Institute of Plant Production and Processing
CSIRO*, GPO Box 1600
Canberra, ACT 2601 AUSTRALIA
glk (Wheat gDNA clones; 'glk' is)
lab designator for loci detected with 'Tag'
clones)
Appels, R. (See csb)
hhu Westhoff, P.
Institut fur Entwicklungs und Molekularbiologie
der Pflanzen
Heinrich-Heine-Universitat*
Universitats strasse 1/ Geb.
26.03.02 D-40225
Dusseldorf, GERMANY
ksu Gill, B.S.
Department of Plant Pathology
Throckmorton Hall
Kansas State University*
Manhattan, KS 66506-5502 USA
msu Raikhel, N.
MSU-DOE Plant Research Laboratory
Michigan State University*
East Lansing, MI 48824-1312 USA
mwg (Barley gDNA* clones)
Graner, A.
Institute for Resistance Genetics
Federal Biological Research Center for Agriculture
and Forestry
W-8059 Grunbach, GERMANY
npi Grant, D.
Pioneer Hi-Bred International
7250 N.W. 62nd Avenue
Johnston, IA 50131 USA
php Grant, D. (see npi)
psb (Barley clones*)
Laurie, D.
John Innes Centre
Norwich Research Park
Colney, Norwich, NR4 7UH, UK
psr (Wheat clones)
Gale, M.D.
John Innes Centre
Norwich Research Park
Colney, Norwich, NR4 7UH, UK
psp (PCR markers)
Gale, M.D. (see psr)
rgc (Rice cDNA* clones)
Sasaki, T.
Rice Genome Research Program
National Institute of Agrobiological Resources
2-1-2, Kannondai, Tsukuba, Ibaraki 305
JAPAN
rgg (Rice gDNA* clones)
Sasaki, T. (see rgc)
rgr (Rice root* cDNA clones)
Sasaki, T. (see rgc)
rgy (Rice YAC* end clone)
Sasaki, T. (see rgc)
rsq Quatrano, R.*
Department of Biology
CB# 3280 Coker Hall
The University of North Carolina
Chapel Hill, NC 27599-3280 USA
sfr Keller, B.
Swiss Federal Research Station for Agronomy*
Reckenholzstr. 191-211
Postfach 8046
Zurich, SWITZERLAND
tam (Wheat DNA clones)
Hart, G.E.
Soil and Crop Sciences Department
Texas A&M University*
College Station, TX 77843, USA
ucb Quail, P.
Department of Plant Biology
Plant Gene Expression Center
University of California-Berkeley*
Berkeley, CA 94720 USA
umc Coe, E.H.
University of Missouri, Columbia*
Columbia, MO 65211 USA
waxc (Barley cDNA clones)
von Wettstein-Knowles, P.
Carlsberg Laboratory
Department of Physiology
Gamle Carlsberg VEJ 10
DK-2500 Copenhagen Valby, DENMARK
wg (Wheat gDNA clones)
Sorrells, M.E. (see bcd)
wia Fincher, G.
Department of Agronomy
Waite Agricultural Research Institute*
University of Adelaide
South Australia, 5065
AUSTRALIA
wye Ainsworth, C.
Wye College*
University of London
Wye, Ashford, Kent, TN25 5AH
UK
Organisation of the catalogue.
4. Add itv: = Near isogenic tetraploid stocks.
ma: = Mapped in segregating populations.
Add at the end of the section:
'Q has been mapped in the distal region of 5A, flanked
by Xrsq805(Embp)- 5A (proximal 4.6 cM) and Xpsr370-5A (distal 4.3 cM)
(9542).'
Accumulation of abscisic acid (new section).
A quantitative trait locus (QTL) has been mapped
on 5AL between Xpsr575- 5A (proximal) and Xpsr426 (distal) (9544).
4. Purple Culm
Pc. itv: LD222*11/CS (Hope 7B)
(9538).
Crossability with rye and Hordeum spp.
Insert: 'Crossability between wheat and Aegilops
squarrosa is controlled by the Kr series of genes (9518).'
See 'Genetic nomenclature proposal' above for a proposal
for the naming of AFLP loci.
Delete the present preamble and substitute,
'The following list catalogues DNA-marker loci
that (1) have been detected either by Southern hybridization of DNA
restriction fragments or as sequence-tagged-sites by amplification of DNA
fragments with primers and (2) have been localized to specific wheat
chromosomes. The list does not include the 5S RNA or the 18S 5.8S
26S rRNA (Nor) loci, which are included elsewhere in the catalogue. No
attempt has been made to list orthologous loci in related species, although
many have been identified (e.g., 950,951).
The nomenclature used is that published in the
1994 Supplement, except for some loci detected with 'known-function'
clones, for which other nomenclature has been used in the publications
cited. The reference(s) that follow the locus symbols designate
the publication(s) in which the chromosomal locations or map positions
of the loci were first reported. References that are in parentheses
( ) contain the listed locus symbol, while the symbols for loci for
which the references are in brackets [ ] were assigned by the curators
in accordance with the current nomenclature guidelines. Symbols previously
assigned to loci appear as synonyms in brackets. Symbols for a few
DNA markers detected with known-function DNA probes are marked with an
asterisk, *, ;these are temporary, pending assignment of the laboratory
designator.
Other chromosomes bearing markers detected with
the same probe or the same primers are indicated in parentheses after
the probe or the primers.'