BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= ANA_0165
(69 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154509267|ref|ZP_02044909.1| hypothetical protein ACTODO... 90 3e-17
gi|45593089|gb|AAS68133.1| ATP synthase C subunit [Bifidoba... 59 9e-08
gi|19552430|ref|NP_600432.1| ATP synthase subunit C [Coryne... 59 1e-07
gi|23336543|ref|ZP_00121755.1| COG0636: F0F1-type ATP synth... 59 1e-07
gi|119026450|ref|YP_910295.1| ATP synthase C chain [Bifidob... 58 2e-07
gi|62423953|ref|ZP_00379106.1| COG0636: F0F1-type ATP synth... 57 2e-07
gi|148272344|ref|YP_001221905.1| ATP synthase C chain (Lipi... 57 3e-07
gi|38233641|ref|NP_939408.1| ATP synthase subunit C [Coryne... 56 5e-07
gi|54023027|ref|YP_117269.1| ATP synthase subunit C [Nocard... 56 7e-07
gi|68536425|ref|YP_251130.1| ATP synthase C chain [Coryneba... 55 9e-07
gi|50954449|ref|YP_061737.1| ATP synthase, C chain [Leifson... 55 1e-06
gi|21223728|ref|NP_629507.1| ATP synthase C chain [Streptom... 55 2e-06
gi|68232421|ref|ZP_00571569.1| H+-transporting two-sector A... 53 5e-06
gi|111018478|ref|YP_701450.1| H(+)-transporting two-sector ... 53 6e-06
>gi|154509267|ref|ZP_02044909.1| hypothetical protein ACTODO_01792 [Actinomyces odontolyticus ATCC
17982]
gi|153798901|gb|EDN81321.1| hypothetical protein ACTODO_01792 [Actinomyces odontolyticus ATCC
17982]
Length = 69
Score = 90.1 bits (222), Expect = 3e-17, Method: Composition-based stats.
Identities = 61/69 (88%), Positives = 65/69 (94%)
Query: 1 MSLTALAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLI 60
M A AY+GYGLATLGPG+GIGL+VGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLI
Sbjct: 1 MGTAAFAYIGYGLATLGPGLGIGLMVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLI 60
Query: 61 GFVLPLVVK 69
GFVLPL+VK
Sbjct: 61 GFVLPLIVK 69
>gi|45593089|gb|AAS68133.1| ATP synthase C subunit [Bifidobacterium animalis]
Length = 76
Score = 58.9 bits (141), Expect = 9e-08, Method: Composition-based stats.
Identities = 37/64 (57%), Positives = 46/64 (71%)
Query: 6 LAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFVLP 65
L VGYGLA +GPGIG+G+L+GKT E TARQPE+ GRL T M +G VE L L+GFV
Sbjct: 13 LNVVGYGLAAIGPGIGLGILIGKTIECTARQPELGGRLQTLMFLGLAFVEVLALLGFVAA 72
Query: 66 LVVK 69
+ +
Sbjct: 73 FIFQ 76
>gi|19552430|ref|NP_600432.1| ATP synthase subunit C [Corynebacterium glutamicum ATCC 13032]
gi|62390095|ref|YP_225497.1| ATP synthase subunit C [Corynebacterium glutamicum ATCC 13032]
gi|145295346|ref|YP_001138167.1| hypothetical protein cgR_1285 [Corynebacterium glutamicum R]
gi|9757616|dbj|BAB08152.1| H+-ATPase c subunit [Corynebacterium glutamicum]
gi|10039447|dbj|BAB13355.1| H+-ATPase c subunit [Brevibacterium flavum]
gi|21323974|dbj|BAB98600.1| F0F1-type ATP synthase c subunit/Archaeal/vacuolar-type H+-ATPase
subunit K [Corynebacterium glutamicum ATCC 13032]
gi|41325431|emb|CAF19911.1| ATP SYNTHASE C CHAIN [Corynebacterium glutamicum ATCC 13032]
gi|140845266|dbj|BAF54265.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 80
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 38/62 (61%), Positives = 47/62 (75%)
Query: 2 SLTALAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIG 61
++T L VGYG+AT+GPG+GIG+LVGK E ARQPE+AG+L T M +G VEAL LIG
Sbjct: 14 TITGLGAVGYGIATIGPGLGIGILVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIG 73
Query: 62 FV 63
V
Sbjct: 74 LV 75
>gi|23336543|ref|ZP_00121755.1| COG0636: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type
H+-ATPase, subunit K [Bifidobacterium longum DJO10A]
gi|23464961|ref|NP_695564.1| ATP synthase C chain [Bifidobacterium longum NCC2705]
gi|23325558|gb|AAN24200.1| ATP synthase C chain [Bifidobacterium longum NCC2705]
gi|45593075|gb|AAS68120.1| ATP synthase C subunit [Bifidobacterium breve]
Length = 75
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/63 (57%), Positives = 49/63 (77%)
Query: 6 LAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFVLP 65
L+ +GYG+ TLGPGIG+G+L GK E+TARQPE++G++ T M IG +VE L LIGFV
Sbjct: 13 LSVIGYGIGTLGPGIGLGILFGKAMESTARQPEMSGKIQTIMFIGLALVEVLALIGFVAA 72
Query: 66 LVV 68
L++
Sbjct: 73 LII 75
>gi|119026450|ref|YP_910295.1| ATP synthase C chain [Bifidobacterium adolescentis ATCC 15703]
gi|154488037|ref|ZP_02029154.1| hypothetical protein BIFADO_01606 [Bifidobacterium adolescentis
L2-32]
gi|118766034|dbj|BAF40213.1| ATP synthase C chain [Bifidobacterium adolescentis ATCC 15703]
gi|154083510|gb|EDN82555.1| hypothetical protein BIFADO_01606 [Bifidobacterium adolescentis
L2-32]
Length = 75
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/62 (59%), Positives = 45/62 (72%)
Query: 6 LAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFVLP 65
L VGYGLA +GPGIG+G+L+GKT E TARQPE+ RL T M +G VE L L+GFVL
Sbjct: 13 LNVVGYGLAAIGPGIGLGILIGKTIEGTARQPELGSRLQTLMFLGLAFVEVLALLGFVLA 72
Query: 66 LV 67
+
Sbjct: 73 FI 74
>gi|62423953|ref|ZP_00379106.1| COG0636: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type
H+-ATPase, subunit K [Brevibacterium linens BL2]
Length = 74
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 46/62 (74%)
Query: 5 ALAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFVL 64
+L VGYGLA +GPG+G+G+++GKT E TARQPE+AG L NM +G ++EAL LIG
Sbjct: 10 SLNTVGYGLAAIGPGVGVGIVIGKTIEGTARQPEMAGALRGNMFLGIALIEALALIGIAT 69
Query: 65 PL 66
P
Sbjct: 70 PF 71
>gi|148272344|ref|YP_001221905.1| ATP synthase C chain (Lipid-binding protein) [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147830274|emb|CAN01208.1| ATP synthase C chain (Lipid-binding protein) [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 77
Score = 57.0 bits (136), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/57 (61%), Positives = 42/57 (73%)
Query: 6 LAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGF 62
+A VGYGLA +GPGIG+G++ GKT EA ARQPE+AG L T M +G EAL LIG
Sbjct: 13 IATVGYGLAAIGPGIGVGIVAGKTVEAMARQPEMAGSLRTTMFLGIAFSEALALIGL 69
>gi|38233641|ref|NP_939408.1| ATP synthase subunit C [Corynebacterium diphtheriae NCTC 13129]
gi|38199901|emb|CAE49567.1| ATP synthase C chain [Corynebacterium diphtheriae]
Length = 79
Score = 56.2 bits (134), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 5 ALAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFVL 64
++A VGYG+AT+GPG+GIG+LVGK E ARQPE+AG+L T M +G VEAL LIG V
Sbjct: 16 SIATVGYGIATIGPGLGIGILVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVA 75
Query: 65 PLVV 68
++
Sbjct: 76 GFIL 79
>gi|54023027|ref|YP_117269.1| ATP synthase subunit C [Nocardia farcinica IFM 10152]
gi|54014535|dbj|BAD55905.1| putative ATP synthase C subunit [Nocardia farcinica IFM 10152]
Length = 81
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 2 SLTALAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIG 61
+L L VGYGLA +GPGIG+G++VGK E ARQPE+ G + TNM +G EAL LIG
Sbjct: 15 TLKGLGAVGYGLAAIGPGIGVGIVVGKAIEGIARQPELQGTIRTNMFLGIAFTEALALIG 74
Query: 62 FV 63
V
Sbjct: 75 LV 76
>gi|68536425|ref|YP_251130.1| ATP synthase C chain [Corynebacterium jeikeium K411]
gi|68264024|emb|CAI37512.1| ATP synthase C chain [Corynebacterium jeikeium K411]
Length = 80
Score = 55.5 bits (132), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/55 (60%), Positives = 40/55 (72%)
Query: 9 VGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFV 63
+GYGLA +G IG+G + GKT EA ARQPE+AG+L T M +G EAL LIGFV
Sbjct: 21 IGYGLAAIGSAIGVGNVAGKTAEAMARQPEMAGQLRTTMFLGIAFAEALALIGFV 75
>gi|50954449|ref|YP_061737.1| ATP synthase, C chain [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50950931|gb|AAT88632.1| ATP synthase, C chain [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 73
Score = 55.1 bits (131), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 6 LAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIG 61
+A VGYGLA +GP IG+G++VGKT E+ ARQPE+AGRL M IG EAL IG
Sbjct: 10 IATVGYGLAAIGPAIGVGIVVGKTIESVARQPELAGRLQVLMYIGIAFTEALAFIG 65
>gi|21223728|ref|NP_629507.1| ATP synthase C chain [Streptomyces coelicolor A3(2)]
gi|61219624|sp|P0A304|ATPL_STRCO ATP synthase C chain (Lipid-binding protein)
gi|61219625|sp|P0A305|ATPL_STRLI ATP synthase C chain (Lipid-binding protein)
gi|405796|emb|CAA80322.1| H(+)-transporting ATP synthase [Streptomyces lividans]
gi|8568790|emb|CAB94539.1| ATP synthase C chain [Streptomyces coelicolor A3(2)]
Length = 76
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/63 (50%), Positives = 43/63 (68%)
Query: 5 ALAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFVL 64
+L +GYGLA +GPG+G+G++ G +A ARQPE AG + N I+G EAL LIG V+
Sbjct: 11 SLGSIGYGLAAIGPGVGVGIIFGNGTQAMARQPEAAGLIRANQILGFAFCEALALIGLVM 70
Query: 65 PLV 67
P V
Sbjct: 71 PFV 73
>gi|68232421|ref|ZP_00571569.1| H+-transporting two-sector ATPase, C subunit [Frankia sp.
EAN1pec]
gi|68199949|gb|EAN14173.1| H+-transporting two-sector ATPase, C subunit [Frankia sp.
EAN1pec]
Length = 82
Score = 53.1 bits (126), Expect = 5e-06, Method: Composition-based stats.
Identities = 34/62 (54%), Positives = 43/62 (69%)
Query: 6 LAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFVLP 65
+ V YG+ATLGPGIG+G++ G +A ARQPE F M+IG +VEAL LIGFV+P
Sbjct: 19 IGTVAYGIATLGPGIGVGIIFGLGIQAIARQPEAEQVAFRYMLIGFAVVEALALIGFVVP 78
Query: 66 LV 67
V
Sbjct: 79 FV 80
>gi|111018478|ref|YP_701450.1| H(+)-transporting two-sector ATPase subunit C [Rhodococcus sp.
RHA1]
gi|110818008|gb|ABG93292.1| H(+)-transporting two-sector ATPase subunit C [Rhodococcus sp.
RHA1]
Length = 81
Score = 52.8 bits (125), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 4 TALAYVGYGLATLGPGIGIGLLVGKTQEATARQPEVAGRLFTNMIIGAGMVEALGLIGFV 63
T +GYGLA +GPGIG+G++VGK E RQPE+AG++ T M +G EAL LIG V
Sbjct: 17 TGFGAIGYGLAAIGPGIGVGIVVGKAIEGMVRQPEMAGQVRTTMFLGIAFTEALALIGLV 76
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.323 0.144 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 247,426,615
Number of Sequences: 5470121
Number of extensions: 8932325
Number of successful extensions: 26027
Number of sequences better than 1.0e-05: 146
Number of HSP's better than 0.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 25882
Number of HSP's gapped (non-prelim): 158
length of query: 69
length of database: 1,894,087,724
effective HSP length: 41
effective length of query: 28
effective length of database: 1,669,812,763
effective search space: 46754757364
effective search space used: 46754757364
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)