R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 1 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|11358680|pir||T49870 probable transcription factor - Arabidopsis thaliana
>gi|7576169|emb|CAB87920.1| (AL163912) putative transcription
factor [Arabidopsis thaliana]
Length = 263
Frame 3 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | 263
0 50 100 150 200 250
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 35/95 (36%), Positives = 47/95 (49%), Frame = +3
Query: 141 GKRSLPPHE--EKKEAFNFPIIHPTPSQNRKEQASPSPFSLLMS--NNKNNTFFPTPHGQ 308
GKR E EKKEA + I P S R + + S L N++++ H
Sbjct: 8 GKRPFRGDESDEKKEADDDENIFPFFSA-RSQYDMRAMVSALTQVIGNQSSSHDNNQHQP 66
Query: 309 ISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGK 422
+ ++ NPP Q +RK+HYRGVRQRPWGK
Sbjct: 67 VVYNQ--QDPNPPAPPTQDQGLLRKRHYRGVRQRPWGK 102
Score = 82 (28.9 bits), Expect = 2.4, P = 0.91
Identities = 34/101 (33%), Positives = 46/101 (45%), Frame = +3
Query: 141 GKRSLPPHE--EKKEAFNFPIIHPTPSQNRKEQASPSPFSLLMS--NNKNNTFFPTPHGQ 308
GKR E EKKEA + I P S R + + S L N++++ H
Sbjct: 8 GKRPFRGDESDEKKEADDDENIFPFFSA-RSQYDMRAMVSALTQVIGNQSSSHDNNQHQP 66
Query: 309 ISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGKVRQRPWG 443
+ ++ NPP Q +RK+HYRGVRQRPWG
Sbjct: 67 VVYNQ--QDPNPPAPPTQDQGLLRKRHYRGVRQRPWG-------- 101
>gi|9758388|dbj|BAB08875.1| (AB022212) AP2 domain transcription factor-like
[Arabidopsis thaliana]
Length = 248
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 248
0 50 100 150 200
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 31/98 (31%), Positives = 48/98 (48%), Frame = +3
Query: 141 GKRSL--PPHEEKKEAFN-FPIIHPTPSQNRKEQASPSPFSLLMSNNKNNTFFPTPHGQI 311
GKR EE++E N FP+ + + S + ++ N ++ +
Sbjct: 3 GKRPFGGDESEEREEDENLFPVFSARSQHDMRVMVSA--LTQVIGNQQSKSHDNISSIDD 60
Query: 312 STSEFVNSQNPPQA---TNQGIDDIRKKHYRGVRQRPWGK 422
+ N Q+P Q T+Q D+R++HYRGVRQRPWGK
Sbjct: 61 NYPSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWGK 100
Score = 81 (28.5 bits), Expect = 2.9, P = 0.95
Identities = 30/101 (29%), Positives = 47/101 (46%), Frame = +3
Query: 141 GKRSL--PPHEEKKEAFN-FPIIHPTPSQNRKEQASPSPFSLLMSNNKNNTFFPTPHGQI 311
GKR EE++E N FP+ + + S + ++ N ++ +
Sbjct: 3 GKRPFGGDESEEREEDENLFPVFSARSQHDMRVMVSA--LTQVIGNQQSKSHDNISSIDD 60
Query: 312 STSEFVNSQNPPQA---TNQGIDDIRKKHYRGVRQRPWGKVRQRPWG 443
+ N Q+P Q T+Q D+R++HYRGVRQRPWG
Sbjct: 61 NYPSVYNPQDPNQQVAPTHQDQGDLRRRHYRGVRQRPWG-------- 99
>gi|7531111|sp|O80341|ERF5_ARATH ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5
(ATERF5) >gi|3434975|dbj|BAA32422.1| (AB008107) ethylene responsive
element binding factor 5 [Arabidopsis thaliana]
Length = 300
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 300
0 50 100 150 200 250
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.0093, P = 0.0093
Identities = 26/76 (34%), Positives = 36/76 (47%), Frame = +3
Query: 231 QASPSPFSLLMSNNKNNTFFPTPHGQI----------STSEFVN--SQNPPQATNQGIDD 374
+ S S F SN N F P QI + +E++ ++N + + +
Sbjct: 91 EVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSE 150
Query: 375 IRKKHYRGVRQRPWGK 422
KKHYRGVRQRPWGK
Sbjct: 151 EEKKHYRGVRQRPWGK 166
>gi|8809606|dbj|BAA97157.1| (AB018117) ethylene responsive element binding
factor 5 (ATERF5) [Arabidopsis thaliana]
Length = 329
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 329
0 150 300
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.011, P = 0.011
Identities = 26/76 (34%), Positives = 36/76 (47%), Frame = +3
Query: 231 QASPSPFSLLMSNNKNNTFFPTPHGQI----------STSEFVN--SQNPPQATNQGIDD 374
+ S S F SN N F P QI + +E++ ++N + + +
Sbjct: 120 EVSVSDFDFKPSNQNQNQFEPELKSQIRKPPLKISLPAKTEWIQFAAENTKPEVTKPVSE 179
Query: 375 IRKKHYRGVRQRPWGK 422
KKHYRGVRQRPWGK
Sbjct: 180 EEKKHYRGVRQRPWGK 195
>gi|7488100|pir||E71444 probable EREBP-4 - Arabidopsis thaliana
>gi|2245108|emb|CAB10530.1| (Z97343) EREBP-4 like protein
[Arabidopsis thaliana] >gi|7268501|emb|CAB78752.1| (AL161546)
EREBP-4 like protein [Arabidopsis thaliana]
Length = 603
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | || 603
0 150 300 450 600
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.019, P = 0.019
Identities = 27/85 (31%), Positives = 40/85 (47%), Frame = +3
Query: 171 KKEAFNFPIIHPTPSQNRKE---QASPSPFSLLMSNNKNNTFFPTPHGQISTSEFVNSQN 341
K E F+F + PS++ Q++P P + SN K P+ + +F
Sbjct: 63 KPEIFDFDVKSEIPSESNDSFTFQSNP-PRVTVQSNRKPPLKIAPPN-RTKWIQFATGNP 120
Query: 342 PPQATNQGIDDIRKKHYRGVRQRPWGK 422
P+ + K+HYRGVR RPWGK
Sbjct: 121 KPELPVPVVAAEEKRHYRGVRMRPWGK 147
>gi|4699734|pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of
Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average
Structure
Length = 63
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 63
0 20 40 60
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.036, P = 0.036
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +3
Query: 384 KHYRGVRQRPWGK 422
KHYRGVRQRPWGK
Sbjct: 1 KHYRGVRQRPWGK 13
>gi|4699791|pdb|2GCC| Solution Structure Of The Gcc-Box Binding Domain, Nmr,
Minimized Mean Structure >gi|4699799|pdb|3GCC| Solution Structure
Of The Gcc-Box Binding Domain, Nmr, 46 Structures
Length = 70
Frame 3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 70
0 20 40 60
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.036, P = 0.036
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +3
Query: 384 KHYRGVRQRPWGK 422
KHYRGVRQRPWGK
Sbjct: 4 KHYRGVRQRPWGK 16
>gi|7489077|pir||T07686 transcription factor Pti4 - tomato (fragment)
>gi|3342211|gb|AAC50047.1| (U89255) Pti4 [Lycopersicon esculentum]
Length = 234
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 234
0 50 100 150 200
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.24, P = 0.21
Identities = 25/60 (41%), Positives = 33/60 (55%), Frame = +3
Query: 243 SPFSLLMSNNKNNTFFPTPHGQISTS-EFVNSQNPPQATNQGIDDIRK-KHYRGVRQRPW 416
SPF+ K+ P +I +S EF S +P + T + K +HYRGVRQRPW
Sbjct: 62 SPFNFTAGEVKSE-----PREEIESSPEF--SPSPAETTAAPAAETPKGRHYRGVRQRPW 114
Query: 417 GK 422
GK
Sbjct: 115 GK 116
>gi|8809571|dbj|BAA97122.1| (AB016264) ethylene-responsive element binding
factor [Nicotiana sylvestris]
Length = 237
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 237
0 50 100 150 200
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.32, P = 0.28
Identities = 25/60 (41%), Positives = 32/60 (53%), Frame = +3
Query: 243 SPFSLLMSNNKNNTFFPTPHGQISTSEFVNSQNPPQATNQGIDDIRK-KHYRGVRQRPWG 419
+PF+L + K P + +TS V S PP T + K +HYRGVRQRPWG
Sbjct: 57 TPFNLTSTEIKAE---PREEIEPATSP-VPSVAPPAETTTAQAVVPKGRHYRGVRQRPWG 112
Query: 420 K 422
K
Sbjct: 113 K 113
>gi|11358305|pir||T48580 hypothetical protein T31B5.150 - Arabidopsis thaliana
>gi|7529288|emb|CAB86640.1| (AL163491) putative protein
[Arabidopsis thaliana]
Length = 212
Frame 3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 212
0 50 100 150 200
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.48, P = 0.38
Identities = 14/18 (77%), Positives = 16/18 (88%), Frame = +3
Query: 369 DDIRKKHYRGVRQRPWGK 422
D R++HYRGVRQRPWGK
Sbjct: 32 DQPRRRHYRGVRQRPWGK 49
>gi|3298498|dbj|BAA31525.1| (AB013301) ethylene responsive element binding
factor [Arabidopsis thaliana] >gi|9927268|dbj|BAB12039.1|
(AB008316) extracellular signal-regulated factor [Arabidopsis
thaliana]
Length = 281
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | 281
0 50 100 150 200 250
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.62, P = 0.46
Identities = 21/64 (32%), Positives = 30/64 (46%), Frame = +3
Query: 231 QASPSPFSLLMSNNKNNTFFPTPHGQISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQR 410
Q++P P + SN K P+ + +F P+ + K+HYRGVR R
Sbjct: 86 QSNP-PRVTVQSNRKPPLKIAPPN-RTKWIQFATGNPKPELPEPVVAAEEKRHYRGVRMR 143
Query: 411 PWGK 422
PWGK
Sbjct: 144 PWGK 147
>gi|7489113|pir||T02590 DNA binding protein EREBP-2 - common tobacco
>gi|1208498|dbj|BAA07324.1| (D38126) EREBP-2 [Nicotiana tabacum]
Length = 233
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | 233
0 50 100 150 200
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.78, P = 0.54
Identities = 24/60 (40%), Positives = 31/60 (51%), Frame = +3
Query: 243 SPFSLLMSNNKNNTFFPTPHGQISTSEF-VNSQNPPQATNQGIDDIRK-KHYRGVRQRPW 416
+PF+L + K P +I + V S PP T + K +HYRGVRQRPW
Sbjct: 53 TPFNLTSTEIKAE-----PREEIEPATIPVPSVAPPAETTTAQAVVPKGRHYRGVRQRPW 107
Query: 417 GK 422
GK
Sbjct: 108 GK 109
>gi|7531108|sp|O80338|ERF2_ARATH ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2
(ATERF2) >gi|3434969|dbj|BAA32419.1| (AB008104) ethylene responsive
element binding factor 2 [Arabidopsis thaliana]
>gi|8809604|dbj|BAA97155.1| (AB018117) ethylene responsive element
binding factor 2 (ATERF2) [Arabidopsis thaliana]
Length = 243
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.84, P = 0.57
Identities = 19/55 (34%), Positives = 30/55 (54%), Frame = +3
Query: 264 SNNKNNTFFPTPHGQISTSEFVNS--QNPPQATNQGIDDIRKKHYRGVRQRPWGK 422
S++ + F P ++ +E + + P +A ++ KHYRGVRQRPWGK
Sbjct: 73 SSSDLSCLFDFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHYRGVRQRPWGK 127
>gi|7489115|pir||T02434 DNA binding protein EREBP-4 - common tobacco
>gi|1208497|dbj|BAA07323.1| (D38125) EREBP-4 [Nicotiana tabacum]
Length = 291
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 291
0 50 100 150 200 250
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.87, P = 0.58
Identities = 20/55 (36%), Positives = 27/55 (49%), Frame = +3
Query: 258 LMSNNKNNTFFPTPHGQISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGK 422
+ SN+ T F ++ + + Q Q + KKHYRGVRQRPWGK
Sbjct: 103 ISSNSPKQTSFKERKPSLNIAIPMKQQEVVQKVE--VVPTEKKHYRGVRQRPWGK 155
>gi|6478845|dbj|BAA87068.1| (AB035270) ethylene-responsive element binding
protein1 homolog [Matricaria chamomilla]
Length = 158
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 1.0, P = 0.64
Identities = 22/46 (47%), Positives = 29/46 (63%), Frame = +3
Query: 294 TPHGQISTSE---FVNSQNPPQATNQ--GIDDIRKKHYRGVRQRPWGK 422
TP S+SE FV S+ P ++ Q + + KHYRGVR+RPWGK
Sbjct: 3 TPE-MTSSSENIFFVKSE-PETSSFQPKSLGSQKGKHYRGVRRRPWGK 48
>gi|1168862|sp|P42736|CDI3_ARATH CADMIUM-INDUCED PROTEIN AS30
>gi|629508|pir||S49031 cadmium-induced protein - Arabidopsis
thaliana >gi|541773|emb|CAA85734.1| (Z37504) cadmium-induced
protein [Arabidopsis thaliana]
Length = 204
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 204
0 50 100 150 200
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 1.4, P = 0.76
Identities = 18/42 (42%), Positives = 23/42 (54%), Frame = +3
Query: 297 PHGQISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGK 422
P Q++ E + QAT G RK YRG+R+RPWGK
Sbjct: 40 PTNQVNVKE--EAVKKEQATEPGKRRKRKNVYRGIRKRPWGK 79
>gi|11358894|pir||T49897 transcription factor-like protein - Arabidopsis
thaliana >gi|7576196|emb|CAB87947.1| (AL163912) transcription
factor-like protein [Arabidopsis thaliana]
>gi|9759579|dbj|BAB11436.1| (AB010070) transcription factor-like
protein [Arabidopsis thaliana]
Length = 207
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 1.5, P = 0.77
Identities = 17/44 (38%), Positives = 27/44 (61%), Frame = +3
Query: 312 STSEFVNSQNPPQATNQGI-------DDIRKKHYRGVRQRPWGK 422
S+S +NS + T+Q + +++ +HYRGVR+RPWGK
Sbjct: 77 SSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGK 120
>gi|8809575|dbj|BAA97124.1| (AB016266) ethylene-responsive element binding
factor [Nicotiana sylvestris]
Length = 282
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 282
0 50 100 150 200 250
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 1.5, P = 0.78
Identities = 14/14 (100%), Positives = 14/14 (100%), Frame = +3
Query: 381 KKHYRGVRQRPWGK 422
KKHYRGVRQRPWGK
Sbjct: 135 KKHYRGVRQRPWGK 148
>gi|732177|sp|Q03150|YMX1_RAPSA HYPOTHETICAL 16.0 KD PROTEIN (ORF138)
>gi|419763|pir||S30092 hypothetical protein 138 - radish
mitochondrion >gi|1076476|pir||S50744 hypothetical protein 138 -
radish >gi|14387|emb|CAA78273.1| (Z12626) ORF138 (not yet
identified) [Brassica sp.] >gi|288880|emb|CAA79332.1| (Z18896)
orf138 [Raphanus sativus] >gi|12698301|dbj|BAB21865.1| (AB055435)
ORF138 [Raphanus sativus] >gi|12698303|dbj|BAB21866.1| (AB055436)
ORF138 [Raphanus sativus] >gi|384294|prf||1905379A cytoplasmic male
sterility-associated protein [Brassica napus]
>gi|1096965|prf||2113215A ORF 138 [Brassica napus]
Length = 138
Frame 3 hits (HSPs): ______________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
__________________
Annotated Domains:
Entrez Transmembrane region: POTENTIAL. 19..40
Entrez Domain: 3 X 13 AA TANDEM REPEATS OF K-G- 94..132
Entrez Repetitive region: 1. 94..106
Entrez Repetitive region: 2. 107..119
Entrez Repetitive region: 3. 120..132
PRODOM PD064149: O78727(1) YMX1(1) 1..90
__________________
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.6, P = 0.79
Identities = 16/39 (41%), Positives = 26/39 (66%), Frame = +3
Query: 78 E*KKKKKQLEGELVSKVDRRQGKRSLPPHEEKKEAFNFP 194
E K++KK+ +GE+ K ++++GK + EEKKE N P
Sbjct: 98 EGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGP 136
>gi|12698305|dbj|BAB21867.1| (AB055437) ORF138 [Raphanus sativus]
Length = 138
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.6, P = 0.79
Identities = 16/39 (41%), Positives = 26/39 (66%), Frame = +3
Query: 78 E*KKKKKQLEGELVSKVDRRQGKRSLPPHEEKKEAFNFP 194
E K++KK+ +GE+ K ++++GK + EEKKE N P
Sbjct: 98 EGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGP 136
>gi|12698307|dbj|BAB21868.1| (AB055438) ORF138 [Raphanus sativus]
Length = 138
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.6, P = 0.79
Identities = 16/39 (41%), Positives = 26/39 (66%), Frame = +3
Query: 78 E*KKKKKQLEGELVSKVDRRQGKRSLPPHEEKKEAFNFP 194
E K++KK+ +GE+ K ++++GK + EEKKE N P
Sbjct: 98 EGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGP 136
>gi|12698309|dbj|BAB21869.1| (AB055439) ORF138 [Raphanus sativus]
Length = 138
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.6, P = 0.79
Identities = 16/39 (41%), Positives = 26/39 (66%), Frame = +3
Query: 78 E*KKKKKQLEGELVSKVDRRQGKRSLPPHEEKKEAFNFP 194
E K++KK+ +GE+ K ++++GK + EEKKE N P
Sbjct: 98 EGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGP 136
>gi|12698313|dbj|BAB21871.1| (AB055441) ORF138 [Raphanus sativus]
Length = 138
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.6, P = 0.79
Identities = 16/39 (41%), Positives = 26/39 (66%), Frame = +3
Query: 78 E*KKKKKQLEGELVSKVDRRQGKRSLPPHEEKKEAFNFP 194
E K++KK+ +GE+ K ++++GK + EEKKE N P
Sbjct: 98 EGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGP 136
>gi|12698315|dbj|BAB21872.1| (AB055442) ORF138 [Raphanus sativus]
Length = 138
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 1.6, P = 0.79
Identities = 16/39 (41%), Positives = 26/39 (66%), Frame = +3
Query: 78 E*KKKKKQLEGELVSKVDRRQGKRSLPPHEEKKEAFNFP 194
E K++KK+ +GE+ K ++++GK + EEKKE N P
Sbjct: 98 EGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGP 136
>gi|1707016|gb|AAC69127.1| (U78721) putative AP2 domain transcription factor
[Arabidopsis thaliana]
Length = 218
Frame 3 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 218
0 50 100 150 200
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 1.7, P = 0.81
Identities = 25/77 (32%), Positives = 41/77 (53%), Frame = +3
Query: 192 PIIHPTPSQNRKEQASPSPFSLLMSNNKNNTFFPTPHGQISTSEFVNSQNPPQATNQGID 371
P+ + + NR+E+ S L ++ ++ F GQ S ++ Q+ T Q
Sbjct: 7 PLSPESMAGNREEKKELCCCSTLSESDVSD-FVSELTGQPIPSS-IDDQSS-SLTLQEKS 63
Query: 372 DIRKKHYRGVRQRPWGK 422
+ R+++YRGVRQRPWGK
Sbjct: 64 NSRQRNYRGVRQRPWGK 80
>gi|5281024|emb|CAB45963.1| (Z97343) EREBP-2 protein [Arabidopsis thaliana]
>gi|7268502|emb|CAB78753.1| (AL161546) EREBP-2 protein [Arabidopsis
thaliana]
Length = 225
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 225
0 50 100 150 200
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 1.8, P = 0.83
Identities = 18/58 (31%), Positives = 28/58 (48%), Frame = +3
Query: 264 SNNKNNTFFP-----TPHGQISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGK 422
S++++ + FP TP + + + + + KHYRGVRQRPWGK
Sbjct: 58 SSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGK 115
>gi|2467088|emb|CAA05084.1| (AJ001911) putative Ckc2 [Arabidopsis thaliana]
Length = 246
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 2.1, P = 0.88
Identities = 18/42 (42%), Positives = 23/42 (54%), Frame = +3
Query: 297 PHGQISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGK 422
P Q++ E + QAT G RK YRG+R+RPWGK
Sbjct: 50 PTNQVNVKE-EEAVKKEQATEPGKRRKRKNVYRGIRKRPWGK 90
>gi|2281631|gb|AAC49769.1| (AF003096) AP2 domain containing protein RAP2.3
[Arabidopsis thaliana] >gi|11994632|dbj|BAB02769.1| (AB022217) AP2
domain transcription factor RAP2.3 [Arabidopsis thaliana]
Length = 248
Frame 3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 248
0 50 100 150 200
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 2.1, P = 0.88
Identities = 18/42 (42%), Positives = 23/42 (54%), Frame = +3
Query: 297 PHGQISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGK 422
P Q++ E + QAT G RK YRG+R+RPWGK
Sbjct: 50 PTNQVNVKE--EAVKKEQATEPGKRRKRKNVYRGIRKRPWGK 89
>gi|7531107|sp|O80337|ERFI_ARATH ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
(ATERF1) >gi|3434967|dbj|BAA32418.1| (AB008103) ethylene responsive
element binding factor 1 [Arabidopsis thaliana]
Length = 266
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 266
0 50 100 150 200 250
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 2.4, P = 0.91
Identities = 18/58 (31%), Positives = 28/58 (48%), Frame = +3
Query: 264 SNNKNNTFFP-----TPHGQISTSEFVNSQNPPQATNQGIDDIRKKHYRGVRQRPWGK 422
S++++ + FP TP + + + + + KHYRGVRQRPWGK
Sbjct: 99 SSDEDRSSFPSVKIETPESFAAVDSVPVKKEKTSPVSAAVTAAKGKHYRGVRQRPWGK 156
>gi|5456996|dbj|BAA82402.1| (AB024380) ORF1 [TT virus]
Length = 52
Frame 3 hits (HSPs): ________ __________________
__________________________________________________
Database sequence: | | | | 52
0 20 40
Plus Strand HSPs:
Score = 41 (14.4 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 5/8 (62%), Positives = 7/8 (87%), Frame = +3
Query: 33 FWWRRRSK 56
+WWRRR +
Sbjct: 4 YWWRRRRR 11
Score = 37 (13.0 bits), Expect = 2.6, Sum P(2) = 0.93
Identities = 8/19 (42%), Positives = 12/19 (63%), Frame = +3
Query: 378 RKKHYRGVRQRPWGKVRQR 434
R + +R R+RP G+ R R
Sbjct: 21 RWRRWRARRRRPAGRRRAR 39
>gi|12003376|gb|AAG43545.1|AF211527_1 (AF211527) Avr9/Cf-9 rapidly elicited
protein 1 [Nicotiana tabacum]
Length = 237
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 237
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 2.7, P = 0.93
Identities = 13/14 (92%), Positives = 14/14 (100%), Frame = +3
Query: 381 KKHYRGVRQRPWGK 422
K+HYRGVRQRPWGK
Sbjct: 133 KRHYRGVRQRPWGK 146
>gi|5441588|emb|CAB46843.1| (AJ388543) bikunin-like protein [Canis familiaris]
Length = 52
Frame -1 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | 52
0 20 40
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 2.9, P = 0.94
Identities = 18/43 (41%), Positives = 23/43 (53%), Frame = -1
Query: 301 CGVGKKVLFLLLLMRSEKGDGEACSFRF*DGVG*IIGKLKASF 173
CG +L LLL R+E DGE F V ++GK +ASF
Sbjct: 10 CGALVALLASLLLFRAEAADGERGVHDFCH-VSKVVGKCRASF 51
>gi|12231294|gb|AAG49031.1| (AF204784) ripening regulated protein DDTFR10/A
[Lycopersicon esculentum]
Length = 214
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 214
0 50 100 150 200
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 2.9, P = 0.95
Identities = 13/19 (68%), Positives = 16/19 (84%), Frame = +3
Query: 366 IDDIRKKHYRGVRQRPWGK 422
+++ KK YRGVRQRPWGK
Sbjct: 52 VENSEKKRYRGVRQRPWGK 70
>gi|8843855|dbj|BAA97381.1| (AB023044) contains similarity to ethylene
responsive element binding factor~gene_id:MWD22.13 [Arabidopsis
thaliana]
Length = 250
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 250
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 3.0, P = 0.95
Identities = 20/52 (38%), Positives = 30/52 (57%), Frame = +3
Query: 279 NTFFPTPHGQISTSEFVNSQNPPQAT------NQGIDDIRKKHYRGVRQRPWGK 422
+TF T H T+ ++ + PP AT + + ++HYRGVR+RPWGK
Sbjct: 31 DTFASTIHH--CTTSTLSQRKPPLATIAVPTTAPVVQENDQRHYRGVRRRPWGK 82
>gi|7485319|pir||T04787 hypothetical protein F10M10.180 - Arabidopsis thaliana
>gi|4455186|emb|CAB36718.1| (AL035521) putative protein
[Arabidopsis thaliana] >gi|7270391|emb|CAB80158.1| (AL161585)
putative protein [Arabidopsis thaliana]
Length = 268
Frame 3 hits (HSPs): _____ __________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 19/45 (42%), Positives = 26/45 (57%), Frame = +3
Query: 306 QISTSEFVNSQNPPQATN-QGIDDIRKKH-----YRGVRQRPWGK 422
+I++S ++ P A +G IRK+ YRGVRQRPWGK
Sbjct: 102 EITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGK 146
Score = 42 (14.8 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 9/22 (40%), Positives = 15/22 (68%), Frame = +3
Query: 204 PTPSQNRKEQASPSP-FSLLMS 266
P P++ +KEQ SP S+++S
Sbjct: 14 PAPTRYQKEQLSPEQELSVIVS 35
>gi|5835559 ref|NP_008410.1|ATP8_13947 ATP synthase F0 subunit 8 [Ovis aries]
>gi|5915719|sp|O78751|ATP8_SHEEP ATP SYNTHASE PROTEIN 8 (ATPASE
SUBUNIT 8) (A6L) >gi|7436288|pir||T11054 H+-transporting ATP
synthase (EC 3.6.1.34) protein 8 - sheep mitochondrion
>gi|3366627|gb|AAD10100.1| (AF010406) ATPase subunit 8 [Ovis aries]
Length = 66
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 66
0 20 40 60
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 3.8, P = 0.98
Identities = 18/43 (41%), Positives = 24/43 (55%), Frame = +1
Query: 181 LSTFL-LFIQHHLKIERNKLHHHPFHSS*VTTKTTPSSPPHMAK 309
LS FL LFI LKI ++ +H+P +TTKT + P K
Sbjct: 14 LSMFLVLFIIFQLKISKHNFYHNP---ELMTTKTPKQNTPWETK 54
>gi|11281172|pir||T47531 hypothetical protein F16L2.120 - Arabidopsis thaliana
>gi|7339492|emb|CAB82815.1| (AL162459) putative protein
[Arabidopsis thaliana]
Length = 200
Frame -3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | 200
0 50 100 150
Minus Strand HSPs:
Score = 78 (27.5 bits), Expect = 4.7, P = 0.99
Identities = 17/47 (36%), Positives = 27/47 (57%), Frame = -3
Query: 434 SLPNFAPWSLPNSSIVLFPNI-INALICSLGRILAINKFRSAYLAMWG 294
SL F W + ++L PN + +L CS R+L + +F +YL+ WG
Sbjct: 28 SLTTFLSWENLGTCLLLDPNAHVGSLCCSHRRVLLVEEFLGSYLS-WG 74
>gi|12698317|dbj|BAB21873.1| (AB055443) ORF138 [Raphanus sativus]
Length = 138
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 5.4, P = 1.0
Identities = 16/39 (41%), Positives = 25/39 (64%), Frame = +3
Query: 78 E*KKKKKQLEGELVSKVDRRQGKRSLPPHEEKKEAFNFP 194
E K++KK+ +GE K ++++GK + EEKKE N P
Sbjct: 98 EGKEEKKEGKGEKEGKEEKKEGKGEIEGKEEKKEVENGP 136
>gi|2281635|gb|AAC49771.1| (AF003098) AP2 domain containing protein RAP2.5
[Arabidopsis thaliana]
Length = 213
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 213
0 50 100 150 200
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 6.9, P = 1.0
Identities = 13/26 (50%), Positives = 19/26 (73%), Frame = +3
Query: 345 PQATNQGIDDIRKKHYRGVRQRPWGK 422
P TNQ ++ ++ YRGVR+RPWG+
Sbjct: 10 PATTNQTHNNAKEIRYRGVRKRPWGR 35
>gi|83245|pir||S22262 transcription factor HCM1 - yeast (Saccharomyces
cerevisiae) >gi|1907205|emb|CAA42280.1| (X59720) YCR065w, len:532
[Saccharomyces cerevisiae]
Length = 532
Frame 3 hits (HSPs): ____ ________
Annotated Domains: _________
__________________________________________________
Database sequence: | | | | | 532
0 150 300 450
__________________
Annotated Domains:
Entrez domain: fork head DNA-binding domain hom 109..201
PROSITE FORK_HEAD_1: Fork head domain signature 109..122
PROSITE FORK_HEAD_2: Fork head domain signature 153..159
__________________
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 6.9, Sum P(2) = 1.0
Identities = 24/78 (30%), Positives = 35/78 (44%), Frame = +3
Query: 186 NFPIIHPTPSQ-NRKEQASPSPFS-LLMSNNKNNTFFPTPHGQISTSEFVNSQNPPQATN 359
NF + P S P P+S L + + KN P Q S S NSQ PP ++
Sbjct: 364 NFEDLSPLRSNVGAGSLLDPLPYSPLKLYDQKNLALMSKPQSQQSYS---NSQLPPPPSS 420
Query: 360 QGIDDIRK---KHYRGVRQRP 413
G D ++ +H G+ + P
Sbjct: 421 HGSDLLKTPKMRHSDGLEKTP 441
Score = 55 (19.4 bits), Expect = 6.9, Sum P(2) = 1.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Frame = +3
Query: 117 VSKVDRRQGKRSLPPHEEKKEAFNFPII 200
+ +V+ +G LP EE++EA FP I
Sbjct: 222 LEQVESGEGNDDLPDEEEREEAGKFPSI 249
>gi|7531110|sp|O80340|ERF4_ARATH ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4
(ATERF4) >gi|3434973|dbj|BAA32421.1| (AB008106) ethylene responsive
element binding factor 4 [Arabidopsis thaliana]
>gi|6997167|gb|AAF34830.1| (AC023839) ethylene responsive element
binding factor 4 [Arabidopsis thaliana] >gi|9294248|dbj|BAB02150.1|
(AP000413) ethylene responsive element binding factor 4 -like
protein [Arabidopsis thaliana]
Length = 222
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 222
0 50 100 150 200
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 7.5, P = 1.0
Identities = 13/26 (50%), Positives = 19/26 (73%), Frame = +3
Query: 345 PQATNQGIDDIRKKHYRGVRQRPWGK 422
P TNQ ++ ++ YRGVR+RPWG+
Sbjct: 10 PATTNQTHNNAKEIRYRGVRKRPWGR 35
>gi|6056399|gb|AAF02863.1|AC009324_12 (AC009324) AP2 domain containing protein
RAP2.12 [Arabidopsis thaliana]
Length = 358
Frame 3 hits (HSPs): ___ ___
__________________________________________________
Database sequence: | | | | 358
0 150 300
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 7.5, Sum P(2) = 1.0
Identities = 12/15 (80%), Positives = 13/15 (86%), Frame = +3
Query: 378 RKKHYRGVRQRPWGK 422
RK YRG+RQRPWGK
Sbjct: 121 RKNQYRGIRQRPWGK 135
Score = 38 (13.4 bits), Expect = 7.5, Sum P(2) = 1.0
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = +3
Query: 285 FFPTPHGQISTSEFV 329
F P P + TSEF+
Sbjct: 10 FIPPPRSRRVTSEFI 24
>gi|7489114|pir||T02433 DNA binding protein EREBP-3 - common tobacco
>gi|1208496|dbj|BAA07322.1| (D38124) EREBP-3 [Nicotiana tabacum]
Length = 225
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 225
0 50 100 150 200
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 7.7, P = 1.0
Identities = 12/22 (54%), Positives = 17/22 (77%), Frame = +3
Query: 357 NQGIDDIRKKHYRGVRQRPWGK 422
N D +++ HYRGVR+RPWG+
Sbjct: 16 NVKTDGVKEVHYRGVRKRPWGR 37
>gi|417110|sp|P25364|HCM1_YEAST HCM1 PROTEIN >gi|171654|gb|AAA34665.1| (L08252)
Hcm1p [Saccharomyces cerevisiae]
Length = 564
Frame 3 hits (HSPs): ___ ________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 564
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00657A: Fork head domain proteins. 109..150
BLOCKS BL00657B: Fork head domain proteins. 152..194
DOMO DM00381: FORKHEADDNA-BINDINGDOMAIN 23..307
Entrez dna-binding site: FORK-HEAD. 108..199
PFAM Fork_head: Fork head domain 109..218
PRINTS FORKHEAD1: Fork head domain motif I - 2 109..122
PRINTS FORKHEAD2: Fork head domain motif II - 2 130..147
PRINTS FORKHEAD3: Fork head domain motif III - 153..170
PRODOM PD076891: HCM1_YEAST 1..107
PRODOM PD000425: BF1(4) HN3A(3) HN3G(3) 109..203
PRODOM PD136648: HCM1_YEAST 205..563
PROSITE FORK_HEAD_1: Fork head domain signature 109..122
PROSITE FORK_HEAD_2: Fork head domain signature 153..159
__________________
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 7.9, Sum P(2) = 1.0
Identities = 24/78 (30%), Positives = 35/78 (44%), Frame = +3
Query: 186 NFPIIHPTPSQ-NRKEQASPSPFS-LLMSNNKNNTFFPTPHGQISTSEFVNSQNPPQATN 359
NF + P S P P+S L + + KN P Q S S NSQ PP ++
Sbjct: 364 NFEDLSPLRSNVGAGSLLDPLPYSPLKLYDQKNLALMSKPQSQQSYS---NSQLPPPPSS 420
Query: 360 QGIDDIRK---KHYRGVRQRP 413
G D ++ +H G+ + P
Sbjct: 421 HGSDLLKTPKMRHSDGLEKTP 441
Score = 55 (19.4 bits), Expect = 7.9, Sum P(2) = 1.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Frame = +3
Query: 117 VSKVDRRQGKRSLPPHEEKKEAFNFPII 200
+ +V+ +G LP EE++EA FP I
Sbjct: 222 LEQVESGEGNDDLPDEEEREEAGKFPSI 249
>gi|10383801 ref|NP_009991.2| Transcription factor (fork head domain); Hcm1p
[Saccharomyces cerevisiae]
Length = 564
Frame 3 hits (HSPs): ___ ________
__________________________________________________
Database sequence: | | | | | 564
0 150 300 450
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 7.9, Sum P(2) = 1.0
Identities = 24/78 (30%), Positives = 35/78 (44%), Frame = +3
Query: 186 NFPIIHPTPSQ-NRKEQASPSPFS-LLMSNNKNNTFFPTPHGQISTSEFVNSQNPPQATN 359
NF + P S P P+S L + + KN P Q S S NSQ PP ++
Sbjct: 364 NFEDLSPLRSNVGAGSLLDPLPYSPLKLYDQKNLALMSKPQSQQSYS---NSQLPPPPSS 420
Query: 360 QGIDDIRK---KHYRGVRQRP 413
G D ++ +H G+ + P
Sbjct: 421 HGSDLLKTPKMRHSDGLEKTP 441
Score = 55 (19.4 bits), Expect = 7.9, Sum P(2) = 1.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Frame = +3
Query: 117 VSKVDRRQGKRSLPPHEEKKEAFNFPII 200
+ +V+ +G LP EE++EA FP I
Sbjct: 222 LEQVESGEGNDDLPDEEEREEAGKFPSI 249
>gi|6110628|gb|AAF03903.1|AF195652_1 (AF195652) ribosomal protein S2 [Acorus
calamus]
Length = 90
Frame -1 hits (HSPs): ______________________
Frame -3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 90
0 20 40 60 80
Minus Strand HSPs:
Score = 54 (19.0 bits), Expect = 8.3, Sum P(2) = 1.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Frame = -1
Query: 139 CLRSTL-LTNSPSNCFFFFFYSCIYTPSSLLLLLHQNLVLKAD 14
C R+ ++NSP+ F F FY C+ + H +++L+AD
Sbjct: 35 CSRARFFISNSPN--FVFNFYECLVLVDAYR---HDSVILEAD 72
Score = 40 (14.1 bits), Expect = 8.3, Sum P(2) = 1.0
Identities = 7/15 (46%), Positives = 11/15 (73%), Frame = -3
Query: 371 INALICSLGRILAIN 327
I ++IC GRI+ +N
Sbjct: 5 IGSIICQEGRIIFLN 19
>gi|4432818|gb|AAD20668.1| (AC006593) ethylene reponse factor-like AP2 domain
transcription factor [Arabidopsis thaliana]
Length = 236
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 236
0 50 100 150 200
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 8.4, P = 1.0
Identities = 23/65 (35%), Positives = 32/65 (49%), Frame = +3
Query: 228 EQASPSPFSLLMSNNKNNTF-FPTPHGQISTSEFVNSQ--NPPQATNQGIDDIRKKHYRG 398
+ + P F + ++ F F +P I E N N + GID+ R YRG
Sbjct: 25 QSSEPQAFFCPNYDYSDDFFSFESPEMMIK-EEIQNGDVSNSEEEEKVGIDEERS--YRG 81
Query: 399 VRQRPWGK 422
VR+RPWGK
Sbjct: 82 VRKRPWGK 89
>gi|12585164|sp|Q9MQK2|ATP8_CAPII ATP SYNTHASE PROTEIN 8 (ATPASE SUBUNIT 8)
(A6L) >gi|7248423|gb|AAF43481.1|AF104682_2 (AF104682) ATPase
subunit 8 [Capra ibex ibex]
Length = 65
Frame 1 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 65
0 20 40 60
Plus Strand HSPs:
Score = 59 (20.8 bits), Expect = 8.4, P = 1.0
Identities = 15/36 (41%), Positives = 22/36 (61%), Frame = +1
Query: 181 LSTFL-LFIQHHLKIERNKLHHHPFHSS*VTTKTTP 285
LS FL LFI LKI ++ +H+P ++ V + TP
Sbjct: 14 LSMFLALFIIFQLKISKHNFYHNPELTTKVLKQNTP 49
>gi|7528276|gb|AAF63205.1|AF245119_1 (AF245119) AP2-related transcription
factor [Mesembryanthemum crystallinum]
Length = 282
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 282
0 50 100 150 200 250
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 8.6, P = 1.0
Identities = 13/15 (86%), Positives = 14/15 (93%), Frame = +3
Query: 378 RKKHYRGVRQRPWGK 422
R KHYRGVR+RPWGK
Sbjct: 134 RGKHYRGVRRRPWGK 148
>gi|2281637|gb|AAC49772.1| (AF003099) AP2 domain containing protein RAP2.6
[Arabidopsis thaliana]
Length = 164
Frame 3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 164
0 50 100 150
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 9.2, P = 1.0
Identities = 13/15 (86%), Positives = 13/15 (86%), Frame = +3
Query: 378 RKKHYRGVRQRPWGK 422
R K YRGVRQRPWGK
Sbjct: 29 RPKKYRGVRQRPWGK 43
WARNING: HSPs involving 1 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.322 0.137 0.435
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.362 0.159 0.560
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.340 0.150 0.463
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.348 0.159 0.578
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.367 0.166 0.645
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.152 0.538
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 147 146 10. 74 3 12 22 0.12 33
30 0.11 36
+2 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
+1 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
-1 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
-2 0 148 147 10. 74 3 12 22 0.12 33
30 0.11 36
-3 0 147 147 10. 74 3 12 22 0.12 33
30 0.11 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 51
No. of states in DFA: 587 (58 KB)
Total size of DFA: 172 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 159.88u 1.05s 160.93t Elapsed: 00:00:27
Total cpu time: 159.92u 1.11s 161.03t Elapsed: 00:00:27
Start: Mon Feb 4 23:18:57 2002 End: Mon Feb 4 23:19:24 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000