R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|11357297|pir||T45642 FtsH metalloproteinase-like protein - Arabidopsis
thaliana >gi|6522587|emb|CAB61952.1| (AL133292) FtsH
metalloprotease-like protein [Arabidopsis thaliana]
Length = 802
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 802
0 150 300 450 600 750
Plus Strand HSPs:
Score = 452 (159.1 bits), Expect = 5.4e-41, P = 5.4e-41
Identities = 90/117 (76%), Positives = 101/117 (86%), Frame = +1
Query: 22 AGYGLNQTIGPVSISTLSNGGIDESGGSAPWGRDQGHLVDLVQREVKALLQSALEVSLSI 201
A YGLNQ IGPVS++TLS GGID+SGGS PWGRDQG LVDLVQ+EV LLQSAL+V+LS+
Sbjct: 686 AEYGLNQKIGPVSVATLSGGGIDDSGGS-PWGRDQGKLVDLVQKEVTILLQSALDVALSV 744
Query: 202 VRANPTVLEGLGAHLEEKEKVEGEELQKWLRLVVAPAELAIFIDGKQGSLLPLQTGS 372
VRANP VLEGLGA LEEKEKVEGEELQKWL +VVAP ELA+F++GKQ LLP Q S
Sbjct: 745 VRANPDVLEGLGAQLEEKEKVEGEELQKWLSMVVAPEELAVFVEGKQELLLPAQASS 801
>gi|9759220|dbj|BAB09632.1| (AB016885) cell division protein FtsH [Arabidopsis
thaliana]
Length = 806
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 806
0 150 300 450 600 750
Plus Strand HSPs:
Score = 433 (152.4 bits), Expect = 6.4e-39, P = 6.4e-39
Identities = 87/117 (74%), Positives = 99/117 (84%), Frame = +1
Query: 22 AGYGLNQTIGPVSISTLSNGGIDESGGSAPWGRDQGHLVDLVQREVKALLQSALEVSLSI 201
A YGLN+ IGPVS++TLS GGID+SGGS PWGRDQGHLVDLVQREV LLQSAL+V+L++
Sbjct: 690 AEYGLNEKIGPVSVATLSAGGIDDSGGS-PWGRDQGHLVDLVQREVTNLLQSALDVALTV 748
Query: 202 VRANPTVLEGLGAHLEEKEKVEGEELQKWLRLVVAPAELAIFIDGKQGSLLPLQTGS 372
VRANP VLEGLGA LE++EKVEGEELQKWL VV ELA+FI GKQ +LLP Q S
Sbjct: 749 VRANPDVLEGLGAQLEDEEKVEGEELQKWLNRVVPSEELAVFIKGKQTALLPAQASS 805
>gi|2492512|sp|P73437|FTH3_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 3
>gi|7446571|pir||S77374 cell division protein ftsH-4 -
Synechocystis sp. (strain PCC 6803) >gi|1652556|dbj|BAA17477.1|
(D90906) cell division protein FtsH [Synechocystis sp.]
Length = 628
Frame 1 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 628
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 173..193
BLOCKS BL00674B: AAA-protein family proteins. 207..228
BLOCKS BL00674C: AAA-protein family proteins. 240..282
BLOCKS BL00674D: AAA-protein family proteins. 301..347
BLOCKS BL00674E: AAA-protein family proteins. 379..398
BLOCKS BL00142: Neutral zinc metallopeptidases, 435..445
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..20
Entrez Transmembrane region: POTENTIAL. 21..31
Entrez Domain: EXTRACELLULAR (POTENTIAL). 32..119
Entrez Transmembrane region: POTENTIAL. 120..142
Entrez Domain: CYTOPLASMIC (POTENTIAL). 143..628
Entrez np-binding site: ATP (POTENTIAL). 214..221
Entrez metal-binding site: ZINC (CATALYTIC) (BY 438
Entrez active site: BY SIMILARITY. 439
Entrez metal-binding site: ZINC (CATALYTIC) (BY 442
PFAM AAA: ATPases associated with various cel 209..398
PFAM Peptidase_M41: Peptidase family M41 404..616
PRODOM PD094595: FTH3_SYNY3 1..21
PRODOM PD035190: FTSH(6) 23..150
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 155..323
PRODOM PD186075: FTSH(11) PRS6(3) FTH2(2) 329..364
PRODOM PD000272: FTSH(15) TERA(10) PRS7(8) 367..401
PRODOM PD002293: FTSH(16) FTH1(2) FTH2(2) 404..591
PRODOM PD193292: FTH3_SYNY3 593..627
PROSITE AAA: AAA-protein family signature. 315..333
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 214..221
PROSITE ZINC_PROTEASE: Neutral zinc metallopepti 435..444
__________________
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.021, P = 0.021
Identities = 29/107 (27%), Positives = 48/107 (44%), Frame = +1
Query: 4 ANSAITAGYGLNQTIGPVSISTLSNGGIDESGGSAPWGRDQGHLVDLVQREVKALLQSAL 183
A +T YG+++ +GP++ G P + EVK +++
Sbjct: 523 AEQMVTT-YGMSKVLGPLAYDKGQQNNFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQGH 581
Query: 184 EVSLSIVRANPTVLEGLGAHLEEKEKVEGEELQKWLRLVVAPAELAI 324
+L+I+ N +LE + + EKE +EGEEL L V AP L +
Sbjct: 582 NQALAILEHNRDLLEAIAEKILEKEVIEGEELHHLLGQVQAPGTLVV 628
>gi|3218522|emb|CAA19646.1| (AL023874) /prediction=(method:""genefinder"",
version:""084"", score:""143.99"")~/motif=(desc:""ATP/GTP-binding
site motif A (P-loop)"", dbase:""PROSITE"", acc:""PS00017"",
method:""ppsearch"")~/match=(desc:""PARAPLEGIN"", species:""Homo
sapiens (Huma>
Length = 819
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 819
0 150 300 450 600 750
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 1.2, P = 0.71
Identities = 24/84 (28%), Positives = 44/84 (52%), Frame = +1
Query: 28 YGLNQTIGPVSI---STLSNGGIDESGGSAPWGRDQGHLVDLVQREVKALLQSALEVSLS 198
+G+N T+GP+ + GG SGG P+ R ++D E + ++ SA + +
Sbjct: 699 FGMNDTLGPIYVRDADETEGGGAMGSGGKKPFSRAMESMID---NEARHVVASAYQTTEG 755
Query: 199 IVRANPTVLEGLGAHLEEKEKVEGEEL 279
I+ + LE L L EKE ++ +++
Sbjct: 756 ILTTHRDKLEKLAEALLEKETLDYDQV 782
>gi|7290347|gb|AAF45806.1| (AE003425) EG:100G10.7 gene product [Drosophila
melanogaster]
Length = 819
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 819
0 150 300 450 600 750
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 1.2, P = 0.71
Identities = 24/84 (28%), Positives = 44/84 (52%), Frame = +1
Query: 28 YGLNQTIGPVSI---STLSNGGIDESGGSAPWGRDQGHLVDLVQREVKALLQSALEVSLS 198
+G+N T+GP+ + GG SGG P+ R ++D E + ++ SA + +
Sbjct: 699 FGMNDTLGPIYVRDADETEGGGAMGSGGKKPFSRAMESMID---NEARHVVASAYQTTEG 755
Query: 199 IVRANPTVLEGLGAHLEEKEKVEGEEL 279
I+ + LE L L EKE ++ +++
Sbjct: 756 ILTTHRDKLEKLAEALLEKETLDYDQV 782
>gi|11467496 ref|NP_043642.1| ORF 644 [Odontella sinensis]
>gi|1706925|sp|P49825|FTSH_ODOSI CELL DIVISION PROTEIN FTSH HOMOLOG
>gi|7446573|pir||S78301 hypothetical protein 644 - Odontella
sinensis chloroplast >gi|1185191|emb|CAA91674.1| (Z67753) ORF 644
[Odontella sinensis]
Length = 644
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 644
0 150 300 450 600
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 2.0, P = 0.87
Identities = 24/96 (25%), Positives = 49/96 (51%), Frame = +1
Query: 4 ANSAITAGYGLNQTIGPVSISTLSNGGIDESGGSAPWGRDQGHLVDLVQREVKALLQSAL 183
A +T +G++ IGP+++ S G + G A ++ D + EV+ ++
Sbjct: 533 ARQMVTR-FGMSN-IGPLALEDESTGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCY 590
Query: 184 EVSLSIVRANPTVLEGLGAHLEEKEKVEGEELQKWL 291
E ++ IV N V++ + L +KE ++G+E ++ L
Sbjct: 591 EKAIEIVLDNRVVIDLIVEKLLDKETMDGDEFRELL 626
>gi|128980|sp|P01433|NXS2_HEMHA SHORT NEUROTOXIN 2 (TOXIN IV)
>gi|69467|pir||N1RI2 short neurotoxin 2 - ringhals
Length = 61
Frame 3 hits (HSPs): ____________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00272A: Snake toxins proteins. 15..25
BLOCKS BL00272B: Snake toxins proteins. 36..48
BLOCKS BL00272C: Snake toxins proteins. 49..60
DOMO DM00082: SNAKETOXINS 1..60
PFAM toxin: Snake toxin 1..61
PRODOM PD000206: NXS1(24) NXL1(17) CX1(10) 1..60
__________________
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 2.5, P = 0.92
Identities = 14/44 (31%), Positives = 20/44 (45%), Frame = +3
Query: 201 CAGKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
C G++ C+ W R R RG V +K+ CT+ CN
Sbjct: 17 CPGETNCYKKQWSDHRGSRTERGCGCPTVKPGIKLKCCTTDRCN 60
>gi|8927680|gb|AAF82171.1|AC068143_13 (AC068143) Contains similarity to a
chloroplast protease from Capsicum annuum gb|AJ012165. EST
gb|AI995330 comes from this gene. [Arabidopsis thaliana]
Length = 88
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 88
0 20 40 60 80
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 2.5, P = 0.92
Identities = 16/50 (32%), Positives = 27/50 (54%), Frame = +1
Query: 133 LVDLVQREVKALLQSALEVSLSIVRANPTVLEGLGAHLEEKEKVEGEELQ 282
L + + VK L A E++LS +R N ++ + L EKE + G+E +
Sbjct: 10 LANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFR 59
>gi|2492513|sp|P72991|FTH4_SYNY3 CELL DIVISION PROTEIN FTSH HOMOLOG 4
>gi|7446576|pir||S74970 cell division protein ftsH-2 -
Synechocystis sp. (strain PCC 6803) >gi|1652085|dbj|BAA17010.1|
(D90902) cell division protein FtsH [Synechocystis sp.]
Length = 616
Frame 1 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 616
0 150 300 450 600
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 160..180
BLOCKS BL00674B: AAA-protein family proteins. 194..215
BLOCKS BL00674C: AAA-protein family proteins. 227..269
BLOCKS BL00674D: AAA-protein family proteins. 286..332
BLOCKS BL00674E: AAA-protein family proteins. 364..383
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..9
Entrez Transmembrane region: POTENTIAL. 10..30
Entrez Domain: EXTRACELLULAR (POTENTIAL). 31..108
Entrez Transmembrane region: POTENTIAL. 109..129
Entrez Domain: CYTOPLASMIC (POTENTIAL). 130..616
Entrez np-binding site: ATP (POTENTIAL). 201..208
Entrez metal-binding site: ZINC (CATALYTIC) (BY 423
Entrez active site: BY SIMILARITY. 424
Entrez metal-binding site: ZINC (CATALYTIC) (BY 427
PFAM AAA: ATPases associated with various cel 196..383
PFAM Peptidase_M41: Peptidase family M41 389..604
PRODOM PD035190: FTSH(6) 15..134
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 137..308
PRODOM PD186075: FTSH(11) PRS6(3) FTH2(2) 315..348
PRODOM PD000272: FTSH(15) TERA(10) PRS7(8) 352..384
PRODOM PD002293: FTSH(16) FTH1(2) FTH2(2) 389..579
PRODOM PD193293: FTH4_SYNY3 581..615
PROSITE AAA: AAA-protein family signature. 300..318
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 201..208
__________________
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 4.3, P = 0.99
Identities = 28/96 (29%), Positives = 45/96 (46%), Frame = +1
Query: 4 ANSAITAGYGLNQTIGPVSISTLSNGGIDESGGSAPWGRD-QGHLVDLVQREVKALLQSA 180
A +T +G++ +GPV++ GG+ G RD + EV L+ A
Sbjct: 512 ARQMVTR-FGMSDRLGPVALGR-QGGGVF-LGRDIASDRDFSDETAAAIDEEVSQLVDQA 568
Query: 181 LEVSLSIVRANPTVLEGLGAHLEEKEKVEGEELQKWL 291
+ + ++ N +L+ L L EKE V+ EELQ L
Sbjct: 569 YQRAKQVLVENRGILDQLAEILVEKETVDSEELQTLL 605
>gi|5804782|dbj|BAA33755.2| (AB017480) chloroplast FtsH protease [Nicotiana
tabacum]
Length = 714
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 714
0 150 300 450 600
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 6.7, P = 1.0
Identities = 31/98 (31%), Positives = 45/98 (45%), Frame = +1
Query: 31 GLNQTIGPVSISTLSNGGIDESGGSAPWGRDQGHLV-DLVQREVKALLQSALEVSLSIVR 207
G ++ IG V+I GG G +D D+V EV+ L++ A E + I+
Sbjct: 612 GFSKKIGQVAIG--GGGGNPFLGQQMSTQKDYSMATADVVDAEVRELVERAYERATEIIT 669
Query: 208 ANPTVLEGLGAHLEEKEKVEGEELQKWLRLVVAPAELAI 324
+ +L L L EKE V+GEE + AEL I
Sbjct: 670 THIDILHKLAQLLIEKETVDGEEFMSLF--IDGKAELYI 706
>gi|128967|sp|P01435|NXS1_LATSE SHORT NEUROTOXIN 1 PRECURSOR (ERABUTOXIN A, B,
AND C) >gi|69470|pir||N1LT2E short neurotoxin 1a precursor
[validated] - broad-banded blue sea krait >gi|64054|emb|CAA26373.1|
(X02533) erabutoxin a [Laticauda semifasciata]
>gi|4519816|dbj|BAA75752.1| (AB017932) short chain neurotoxin
[Laticauda semifasciata]
Length = 83
Frame 3 hits (HSPs): ___________________________
Annotated Domains: ______________________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00272A: Snake toxins proteins. 37..47
BLOCKS BL00272B: Snake toxins proteins. 58..70
BLOCKS BL00272C: Snake toxins proteins. 71..82
DOMO DM00082: SNAKETOXINS 22..82
PFAM toxin: Snake toxin 22..83
PRODOM PD000206: NXS1(24) NXL1(17) CX1(10) 23..81
__________________
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 6.9, P = 1.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Frame = +3
Query: 201 CA-GKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
C+ G+S C+ W FR RG V +K+ C S CN
Sbjct: 38 CSPGESSCYNKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCN 82
>gi|69471|pir||N1LT1E short neurotoxin 1 - broad-banded blue sea krait
Length = 62
Frame 3 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 6.9, P = 1.0
Identities = 14/43 (32%), Positives = 19/43 (44%), Frame = +3
Query: 204 AGKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
+G+S C+ W FR RG V +K+ C S CN
Sbjct: 19 SGESSCYNKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCN 61
>gi|4558181|pdb|1QKD|A Chain A, Erabutoxin >gi|4558182|pdb|1QKD|B Chain B,
Erabutoxin >gi|4558183|pdb|1QKE| Erabutoxin >gi|231131|pdb|5EBX|
Erabutoxin a
Length = 62
Frame 3 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 6.9, P = 1.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Frame = +3
Query: 201 CA-GKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
C+ G+S C+ W FR RG V +K+ C S CN
Sbjct: 17 CSPGESSCYNKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCN 61
>gi|2780864|pdb|3ERA|A Chain A, Recombinant Erabutoxin A (S8t Mutant)
>gi|2780865|pdb|3ERA|B Chain B, Recombinant Erabutoxin A (S8t
Mutant)
Length = 62
Frame 3 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 6.9, P = 1.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Frame = +3
Query: 201 CA-GKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
C+ G+S C+ W FR RG V +K+ C S CN
Sbjct: 17 CSPGESSCYNKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCN 61
>gi|2780901|pdb|2ERA| Recombinant Erabutoxin A, S8g Mutant
Length = 62
Frame 3 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 6.9, P = 1.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Frame = +3
Query: 201 CA-GKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
C+ G+S C+ W FR RG V +K+ C S CN
Sbjct: 17 CSPGESSCYNKQWSDFRGTIIERGCGCPTVKPGIKLSCCESEVCN 61
>gi|11467752 ref|NP_050804.1| hypothetical chloroplast RF25 [Guillardia theta]
>gi|6016057|sp|O78516|FTSH_GUITH CELL DIVISION PROTEIN FTSH HOMOLOG
>gi|3603077|gb|AAC35738.1| (AF041468) hypothetical chloroplast RF25
[Guillardia theta]
Length = 631
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 631
0 150 300 450 600
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 7.5, P = 1.0
Identities = 26/94 (27%), Positives = 54/94 (57%), Frame = +1
Query: 4 ANSAITAGYGLNQTIGPVSI-STLSNGGIDES-GGSAPWGRDQGHLVDLVQREVKALLQS 177
A +T +G++ IGP+S+ S S+ + + G S+ + D +D+ +V+A++Q
Sbjct: 520 ARQMVTR-FGMSN-IGPLSLESQNSDPFLGRTMGSSSQYSEDIASRIDM---QVRAIIQH 574
Query: 178 ALEVSLSIVRANPTVLEGLGAHLEEKEKVEGEELQK 285
++ I++ N V++ L L EKE ++G+E ++
Sbjct: 575 CHTETVQIIKDNRVVIDKLVDLLIEKETIDGDEFRQ 610
>gi|7438494|pir||T02967 cyclin A-type (clone30) - common tobacco
>gi|1064929|emb|CAA63543.1| (X92967) cyclin A-like protein
[Nicotiana tabacum]
Length = 482
Frame -1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 482
0 150 300 450
Minus Strand HSPs:
Score = 84 (29.6 bits), Expect = 8.9, P = 1.0
Identities = 30/92 (32%), Positives = 45/92 (48%), Frame = -1
Query: 320 ASSAGATTNL-NHFCSSSPSTFSFSSK*APRPSKTVGFARTIESDTSSA-DCSNAFTSL* 147
A A TN+ NH +S+ ++ S SSK AP SK V + + SS S++F
Sbjct: 34 AKKRPALTNISNHTTASARNSLSHSSKLAPCTSKVVSIKKNNSNAASSVLPTSSSFVKPI 93
Query: 146 TRSTRCP*SLPQGADPPDSSIPPLERV-EIDTGP 48
+++ P S A P ++IPPL +D P
Sbjct: 94 SKTVSLPRS--DAAVPKITAIPPLPSTCSMDISP 125
>gi|128986|sp|P01420|NXS3_NAJHA SHORT NEUROTOXIN 3 (TOXIN CM-10) (TOXIN
V-NH-I1) >gi|69452|pir||N1NJ3E short neurotoxin 3 - cobra (Naja
haje annulifera) >gi|229523|prf||751415A toxin CM10 [Naja haje
annulifera]
Length = 61
Frame 3 hits (HSPs): ________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00272A: Snake toxins proteins. 15..25
BLOCKS BL00272B: Snake toxins proteins. 36..48
BLOCKS BL00272C: Snake toxins proteins. 49..60
PFAM toxin: Snake toxin 1..61
PRODOM PD000206: NXS1(24) NXL1(17) CX1(10) 1..60
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.0, P = 1.0
Identities = 15/48 (31%), Positives = 20/48 (41%), Frame = +3
Query: 189 ITFYCAGKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
IT C G+ C+ W R RG V ++I CT+ CN
Sbjct: 13 ITTVCPGEKNCYKKQWSGHRGTIIERGCGCPSVKKGIEINCCTTDKCN 60
>gi|128989|sp|P01421|NXS4_NAJHA SHORT NEUROTOXIN 4 (TOXIN CM-12) (TOXIN
V-NH-I2) >gi|69453|pir||N1NJ4E short neurotoxin 4 - cobra (Naja
haje annulifera) >gi|229524|prf||751415B toxin CM12 [Naja haje
annulifera]
Length = 61
Frame 3 hits (HSPs): ________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00272A: Snake toxins proteins. 15..25
BLOCKS BL00272B: Snake toxins proteins. 36..48
BLOCKS BL00272C: Snake toxins proteins. 49..60
DOMO DM00082: SNAKETOXINS 1..60
PFAM toxin: Snake toxin 1..61
PRODOM PD000206: NXS1(24) NXL1(17) CX1(10) 1..60
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.0, P = 1.0
Identities = 15/48 (31%), Positives = 20/48 (41%), Frame = +3
Query: 189 ITFYCAGKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
IT C G+ C+ W R RG V ++I CT+ CN
Sbjct: 13 ITTVCPGEKNCYKKQWSGHRGTIIERGCGCPSVKKGIEINCCTTDKCN 60
>gi|128971|sp|P01424|NXS1_NAJME SHORT NEUROTOXIN 1 (NEUROTOXIN D)
>gi|69456|pir||N1NJ1W short neurotoxin 1 - forest cobra
Length = 61
Frame 3 hits (HSPs): ____________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
__________________
Annotated Domains:
BLOCKS BL00272A: Snake toxins proteins. 15..25
BLOCKS BL00272B: Snake toxins proteins. 36..48
BLOCKS BL00272C: Snake toxins proteins. 49..60
DOMO DM00082: SNAKETOXINS 1..60
PFAM toxin: Snake toxin 1..61
PRODOM PD000206: NXS1(24) NXL1(17) CX1(10) 1..59
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 9.0, P = 1.0
Identities = 15/44 (34%), Positives = 19/44 (43%), Frame = +3
Query: 201 CAGKSYCFGGSWCSFRRKRESRG*RATEV---VKIGSCTSRACN 323
C G++ C+ W R RG V VKI CT+ CN
Sbjct: 17 CPGETNCYKKQWSDHRGTIIERGCGCPSVKKGVKINCCTTDRCN 60
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.343 0.150 0.541
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.160 0.601
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.337 0.149 0.474
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.345 0.151 0.517
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.350 0.158 0.542
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.360 0.159 0.606
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 201 200 10. 77 3 12 22 0.094 35
31 0.10 38
+2 0 201 200 10. 77 3 12 22 0.094 35
31 0.10 38
+1 0 201 201 10. 77 3 12 22 0.094 35
31 0.10 38
-1 0 201 200 10. 77 3 12 22 0.094 35
31 0.10 38
-2 0 201 200 10. 77 3 12 22 0.094 35
31 0.10 38
-3 0 201 200 10. 77 3 12 22 0.094 35
31 0.10 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 20
No. of states in DFA: 594 (59 KB)
Total size of DFA: 221 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 201.04u 0.90s 201.94t Elapsed: 00:01:03
Total cpu time: 201.09u 0.90s 201.99t Elapsed: 00:01:04
Start: Fri Jan 18 17:34:57 2002 End: Fri Jan 18 17:36:01 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000