BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE0061
(348 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42525580|ref|NP_970678.1| fic family protein [Treponema ... 686 0.0
gi|156864342|gb|EDO57773.1| hypothetical protein CLOL250_01... 595 e-168
gi|23464807|ref|NP_695410.1| narrowly conserved hypothetica... 280 7e-74
gi|58338033|ref|YP_194618.1| hypothetical protein LBA1780 [... 270 9e-71
gi|68053725|ref|ZP_00537890.1| Filamentation induced by cAM... 262 3e-68
gi|46190654|ref|ZP_00121191.2| COG3177: Uncharacterized con... 256 1e-66
gi|139438367|ref|ZP_01771883.1| Hypothetical protein COLAER... 240 1e-61
gi|46446552|ref|YP_007917.1| hypothetical protein pc0918 [C... 240 1e-61
gi|114568053|ref|YP_755207.1| hypothetical protein Swol_254... 239 2e-61
gi|33599896|ref|NP_887456.1| hypothetical protein BB0907 [B... 239 2e-61
gi|33594040|ref|NP_881684.1| hypothetical protein BP3118 [B... 233 1e-59
gi|146283519|ref|YP_001173672.1| fic family protein [Pseudo... 231 4e-59
gi|121610563|ref|YP_998370.1| filamentation induced by cAMP... 207 1e-51
gi|121593256|ref|YP_985152.1| filamentation induced by cAMP... 205 4e-51
gi|94268977|ref|ZP_01291340.1| Filamentation induced by cAM... 200 1e-49
gi|94264267|ref|ZP_01288061.1| Filamentation induced by cAM... 198 5e-49
gi|56475471|ref|YP_157060.1| hypothetical protein ebA65 [Az... 191 9e-47
gi|94272230|ref|ZP_01292091.1| Filamentation induced by cAM... 180 1e-43
gi|153811513|ref|ZP_01964181.1| hypothetical protein RUMOBE... 168 6e-40
gi|118578543|ref|YP_899793.1| filamentation induced by cAMP... 164 9e-39
gi|148263349|ref|YP_001230055.1| filamentation induced by c... 164 1e-38
gi|126699146|ref|YP_001088043.1| hypothetical protein CD154... 159 3e-37
gi|145955319|ref|ZP_01804323.1| hypothetical protein CdifQ_... 157 1e-36
gi|30250050|ref|NP_842120.1| Bacterial regulatory proteins,... 154 8e-36
gi|114332370|ref|YP_748592.1| filamentation induced by cAMP... 152 2e-35
gi|42520245|ref|NP_966160.1| Fic family protein [Wolbachia ... 150 1e-34
gi|68549088|ref|ZP_00588555.1| Filamentation induced by cAM... 149 2e-34
gi|75758486|ref|ZP_00738607.1| Fic family protein [Bacillus... 144 6e-33
gi|110598084|ref|ZP_01386363.1| Filamentation induced by cA... 144 1e-32
gi|42520226|ref|NP_966141.1| Fic family protein [Wolbachia ... 141 5e-32
gi|58697195|ref|ZP_00372605.1| Fic family protein [Wolbachi... 141 7e-32
gi|121611083|ref|YP_998890.1| filamentation induced by cAMP... 139 3e-31
gi|117926787|ref|YP_867404.1| filamentation induced by cAMP... 138 5e-31
gi|78188802|ref|YP_379140.1| regulatory proteins, AsnC fami... 136 2e-30
gi|153864923|ref|ZP_01997647.1| conserved hypothetical prot... 134 7e-30
gi|58698430|ref|ZP_00373340.1| Fic family protein [Wolbachi... 133 2e-29
gi|75760350|ref|ZP_00740397.1| Fic family protein [Bacillus... 130 2e-28
gi|126653155|ref|ZP_01725279.1| fic family protein [Bacillu... 129 2e-28
gi|58697374|ref|ZP_00372703.1| Fic family protein [Wolbachi... 127 1e-27
gi|75758306|ref|ZP_00738430.1| Fic family protein [Bacillus... 124 1e-26
gi|67458877|ref|YP_246501.1| hypothetical protein RF_0485 [... 119 4e-25
gi|75761078|ref|ZP_00741076.1| Fic family protein [Bacillus... 117 1e-24
gi|89207691|ref|ZP_01186226.1| Filamentation induced by cAM... 113 2e-23
gi|153811512|ref|ZP_01964180.1| hypothetical protein RUMOBE... 100 1e-19
gi|147920130|ref|YP_686106.1| predicted cell division prote... 92 5e-17
gi|95928083|ref|ZP_01310833.1| hypothetical protein CburR_0... 90 3e-16
gi|29655356|ref|NP_821048.1| hypothetical protein CBU_2078 ... 90 3e-16
gi|78189956|ref|YP_380294.1| fic family protein [Chlorobium... 85 8e-15
gi|91205275|ref|YP_537630.1| Fic family protein [Rickettsia... 82 4e-14
gi|21228708|ref|NP_634630.1| hypothetical protein MM_2606 [... 79 3e-13
gi|126179417|ref|YP_001047382.1| filamentation induced by c... 79 6e-13
gi|153827374|ref|ZP_01980041.1| Fic family protein [Vibrio ... 78 7e-13
gi|42525751|ref|NP_970849.1| fic family protein [Treponema ... 78 7e-13
gi|46447446|ref|YP_008811.1| hypothetical protein pc1812 [C... 78 9e-13
gi|147678789|ref|YP_001213004.1| hypothetical protein PTH_2... 77 2e-12
gi|42521107|ref|NP_967022.1| Fic family protein [Wolbachia ... 77 2e-12
gi|147673973|ref|YP_001218547.1| Fic family protein [Vibrio... 76 3e-12
gi|134298802|ref|YP_001112298.1| filamentation induced by c... 76 3e-12
gi|148927904|ref|ZP_01811313.1| filamentation induced by cA... 76 3e-12
gi|99034487|ref|ZP_01314476.1| hypothetical protein Wendoof... 76 3e-12
gi|89890778|ref|ZP_01202287.1| putative cell filamentation ... 76 4e-12
gi|124009630|ref|ZP_01694303.1| filamentation induced by cA... 76 4e-12
gi|91217321|ref|ZP_01254281.1| hypothetical protein P700755... 75 9e-12
gi|124485731|ref|YP_001030347.1| hypothetical protein Mlab_... 75 9e-12
gi|144900421|emb|CAM77285.1| Filamentation induced by cAMP ... 74 1e-11
gi|58698267|ref|ZP_00373186.1| Fic family protein [Wolbachi... 74 1e-11
gi|150403375|ref|YP_001330669.1| filamentation induced by c... 74 1e-11
gi|86130280|ref|ZP_01048880.1| cell filamentation protein-l... 74 2e-11
gi|85716900|ref|ZP_01047865.1| hypothetical protein NB311A_... 74 2e-11
gi|77919717|ref|YP_357532.1| hypothetical protein Pcar_2123... 73 2e-11
gi|58583833|ref|YP_202849.1| hypothetical protein XOO4210 [... 73 2e-11
gi|21229691|ref|NP_635608.1| hypothetical protein XCC0213 [... 73 2e-11
gi|147668840|ref|YP_001213658.1| filamentation induced by c... 73 3e-11
gi|145956009|ref|ZP_01805007.1| hypothetical protein CdifQ_... 73 3e-11
gi|116749488|ref|YP_846175.1| filamentation induced by cAMP... 72 6e-11
gi|51245026|ref|YP_064910.1| hypothetical protein DP1174 [D... 71 8e-11
gi|153003479|ref|YP_001377804.1| filamentation induced by c... 71 9e-11
gi|109728576|ref|ZP_01379987.1| hypothetical protein RbelO_... 71 1e-10
gi|91205754|ref|YP_538109.1| Cell filamentation protein Fic... 71 1e-10
gi|150398854|ref|YP_001322621.1| filamentation induced by c... 71 1e-10
gi|149115246|ref|ZP_01841991.1| filamentation induced by cA... 71 1e-10
gi|95928323|ref|ZP_01311071.1| filamentation induced by cAM... 71 1e-10
gi|83571354|ref|ZP_00922794.1| COG3177: Uncharacterized con... 70 2e-10
gi|91213103|ref|YP_543089.1| hypothetical protein UTI89_C41... 70 2e-10
gi|26250231|ref|NP_756271.1| hypothetical protein c4409 [Es... 70 2e-10
gi|78045796|ref|YP_361971.1| putative regulatory protein, F... 70 2e-10
gi|15804129|ref|NP_290168.1| hypothetical protein Z5009 [Es... 70 2e-10
gi|149199026|ref|ZP_01876066.1| hypothetical protein LNTAR_... 69 4e-10
gi|148264778|ref|YP_001231484.1| filamentation induced by c... 69 4e-10
gi|53715136|ref|YP_101128.1| hypothetical protein BF3852 [B... 69 5e-10
gi|20090718|ref|NP_616793.1| hypothetical protein MA1868 [M... 68 8e-10
gi|121635113|ref|YP_975358.1| hypothetical protein NMC1357 ... 68 1e-09
gi|15794529|ref|NP_284351.1| hypothetical protein NMA1635 [... 68 1e-09
gi|15676370|ref|NP_273506.1| hypothetical protein NMB0459 [... 68 1e-09
gi|113950439|ref|ZP_01436065.1| filamentation induced by cA... 68 1e-09
gi|59801837|ref|YP_208549.1| hypothetical protein NGO1499 [... 67 1e-09
gi|15677282|ref|NP_274435.1| hypothetical protein NMB1423 [... 67 1e-09
gi|84494386|ref|ZP_00993505.1| hypothetical protein JNB_063... 67 1e-09
gi|42528141|ref|NP_973239.1| Fic family protein [Treponema ... 67 1e-09
gi|120435237|ref|YP_860923.1| filamentation induced by cAMP... 67 1e-09
gi|109648334|ref|ZP_01372237.1| filamentation induced by cA... 67 2e-09
gi|78357537|ref|YP_388986.1| hypothetical protein Dde_2494 ... 67 2e-09
gi|109898208|ref|YP_661463.1| filamentation induced by cAMP... 67 2e-09
gi|15677601|ref|NP_274759.1| hypothetical protein NMB1759 [... 67 2e-09
gi|126180058|ref|YP_001048023.1| filamentation induced by c... 67 2e-09
gi|118069059|ref|ZP_01537307.1| filamentation induced by cA... 67 2e-09
gi|77543210|gb|ABA87022.1| hypothetical protein [Vibrio cho... 67 2e-09
gi|152972069|ref|YP_001337215.1| hypothetical protein KPN_0... 66 3e-09
gi|46156226|ref|ZP_00133220.2| COG3177: Uncharacterized con... 66 3e-09
gi|113461405|ref|YP_719474.1| hypothetical protein HS_1262 ... 66 3e-09
gi|115379688|ref|ZP_01466767.1| Fic family protein [Stigmat... 66 3e-09
gi|89896078|ref|YP_519565.1| hypothetical protein DSY3332 [... 66 3e-09
gi|89076596|ref|ZP_01162903.1| Filamentation induced by cAM... 66 4e-09
gi|21229217|ref|NP_635139.1| hypothetical protein MM_3115 [... 66 4e-09
gi|149371310|ref|ZP_01890796.1| Cell filamentation protein ... 66 4e-09
gi|153007961|ref|YP_001369176.1| filamentation induced by c... 66 4e-09
gi|126663814|ref|ZP_01734809.1| Huntingtin interacting prot... 65 5e-09
gi|22538253|ref|NP_689104.1| hypothetical protein SAG2119 [... 65 5e-09
gi|86142005|ref|ZP_01060529.1| hypothetical protein MED217_... 65 7e-09
gi|17544594|ref|NP_502036.1| ZK593.8 [Caenorhabditis elegan... 65 9e-09
gi|134298684|ref|YP_001112180.1| filamentation induced by c... 64 1e-08
gi|68233495|ref|ZP_00572614.1| Filamentation induced by cAM... 64 1e-08
gi|76258791|ref|ZP_00766444.1| Filamentation induced by cAM... 64 2e-08
gi|42453665|ref|ZP_00153572.1| COG3177: Uncharacterized con... 64 2e-08
gi|116626052|ref|YP_828208.1| filamentation induced by cAMP... 64 2e-08
gi|13472455|ref|NP_104022.1| hypothetical protein mlr2757 [... 64 2e-08
gi|149914801|ref|ZP_01903331.1| hypothetical protein RAZWK3... 64 2e-08
gi|115421461|emb|CAJ47967.1| conserved hypothetical protein... 63 2e-08
gi|156357557|ref|XP_001624283.1| predicted protein [Nematos... 63 2e-08
gi|116050721|ref|YP_790458.1| hypothetical protein PA14_288... 63 2e-08
gi|87198398|ref|YP_495655.1| filamentation induced by cAMP ... 63 3e-08
gi|39593671|emb|CAE61963.1| Hypothetical protein CBG05963 [... 63 3e-08
gi|77457308|ref|YP_346813.1| Filamentation induced by cAMP ... 63 3e-08
gi|150401094|ref|YP_001324860.1| filamentation induced by c... 63 3e-08
gi|78357955|ref|YP_389404.1| conserved hypothetical protein... 63 4e-08
gi|91217745|ref|ZP_01254701.1| hypothetical protein P700755... 62 4e-08
gi|118580276|ref|YP_901526.1| transcriptional regulator, Fi... 62 4e-08
gi|114563126|ref|YP_750639.1| filamentation induced by cAMP... 62 4e-08
gi|84352244|ref|ZP_00977213.1| COG3177: Uncharacterized con... 62 4e-08
gi|57238567|ref|YP_179698.1| MloA protein, putative [Campyl... 62 5e-08
gi|153874918|ref|ZP_02002945.1| Filamentation induced by cA... 62 5e-08
gi|91773595|ref|YP_566287.1| filamentation induced by cAMP ... 62 5e-08
gi|107028509|ref|YP_625604.1| filamentation induced by cAMP... 62 5e-08
gi|118712752|ref|ZP_01565321.1| filamentation induced by cA... 62 5e-08
gi|78358480|ref|YP_389929.1| conserved hypothetical protein... 62 5e-08
gi|19881229|gb|AAM00840.1|AF486549_2 MloA [Campylobacter je... 62 6e-08
gi|153951369|ref|YP_001398845.1| putative MloA protein [Cam... 62 6e-08
gi|124545320|ref|ZP_01704525.1| filamentation induced by cA... 62 6e-08
gi|15892452|ref|NP_360166.1| similarity to cell filamentati... 62 7e-08
gi|118580700|ref|YP_901950.1| filamentation induced by cAMP... 62 7e-08
gi|103488094|ref|YP_617655.1| filamentation induced by cAMP... 62 7e-08
gi|16121181|ref|NP_404494.1| hypothetical protein YPO0874 [... 62 7e-08
gi|145597947|ref|YP_001162023.1| hypothetical protein YPDSF... 62 7e-08
gi|19881251|gb|AAM00859.1|AF486552_5 MloA [Campylobacter je... 62 7e-08
gi|71909566|ref|YP_287153.1| Filamentation induced by cAMP ... 62 7e-08
gi|56419287|ref|YP_146605.1| huntingtin interacting protein... 62 7e-08
gi|28867752|ref|NP_790371.1| Fic family protein [Pseudomona... 62 7e-08
gi|91082707|ref|XP_972015.1| PREDICTED: similar to CG9523-P... 62 7e-08
gi|46580449|ref|YP_011257.1| Fic family protein [Desulfovib... 62 8e-08
gi|19881268|gb|AAM00873.1|AF486555_4 MloA [Campylobacter je... 62 8e-08
gi|116751280|ref|YP_847967.1| filamentation induced by cAMP... 61 8e-08
gi|87121098|ref|ZP_01076989.1| hypothetical protein MED121_... 61 8e-08
gi|86153169|ref|ZP_01071374.1| MloA [Campylobacter jejuni s... 61 8e-08
gi|52548921|gb|AAU82770.1| conserved hypothetical protein [... 61 9e-08
gi|148266158|ref|YP_001232864.1| filamentation induced by c... 61 9e-08
gi|149115383|ref|ZP_01842127.1| filamentation induced by cA... 61 1e-07
gi|91773497|ref|YP_566189.1| filamentation induced by cAMP ... 61 1e-07
gi|134045666|ref|YP_001097152.1| filamentation induced by c... 61 1e-07
gi|126180204|ref|YP_001048169.1| filamentation induced by c... 60 1e-07
gi|72039433|ref|XP_797187.1| PREDICTED: similar to HYPE [St... 60 2e-07
gi|62391656|ref|YP_227058.1| hypothetical protein cg3120 [C... 60 2e-07
gi|19554008|ref|NP_602010.1| hypothetical protein NCgl2720 ... 60 2e-07
gi|19881225|gb|AAM00837.1|AF486548_4 MloA [Campylobacter je... 60 2e-07
gi|38232966|ref|NP_938733.1| hypothetical protein DIP0348 [... 60 2e-07
gi|57168616|ref|ZP_00367748.1| MloA [Campylobacter coli RM2... 60 2e-07
gi|34580553|ref|ZP_00142033.1| hypothetical cell filamentat... 60 2e-07
gi|146302235|ref|YP_001196826.1| filamentation induced by c... 60 2e-07
gi|149196785|ref|ZP_01873838.1| filamentation induced by cA... 60 2e-07
gi|56419279|ref|YP_146597.1| hypothetical protein GK0744 [G... 60 2e-07
gi|115359680|ref|YP_776818.1| filamentation induced by cAMP... 60 2e-07
gi|29347923|ref|NP_811426.1| hypothetical protein BT_2513 [... 60 2e-07
gi|94313570|ref|YP_586779.1| filamentation induced by cAMP ... 60 2e-07
gi|88602994|ref|YP_503172.1| filamentation induced by cAMP ... 60 2e-07
gi|121541804|ref|ZP_01673548.1| conserved hypothetical prot... 60 2e-07
gi|77543217|gb|ABA87028.1| hypothetical protein [Vibrio cho... 60 2e-07
gi|86739386|ref|YP_479786.1| filamentation induced by cAMP ... 60 3e-07
gi|78060744|ref|YP_367319.1| Filamentation induced by cAMP ... 60 3e-07
gi|51245038|ref|YP_064922.1| hypothetical protein DP1186 [D... 60 3e-07
gi|157084870|gb|ABV14548.1| hypothetical protein CKO_03468 ... 60 3e-07
gi|69937544|ref|ZP_00632178.1| Filamentation induced by cAM... 59 3e-07
gi|72384673|gb|AAZ67628.1| hypothetical protein [Haemophilu... 59 3e-07
gi|83745589|ref|ZP_00942647.1| Fic family protein [Ralstoni... 59 4e-07
gi|156718631|ref|ZP_02060293.1| filamentation induced by cA... 59 4e-07
gi|148323912|gb|EDK89162.1| hypothetical protein FNP_1379 [... 59 4e-07
gi|19881274|gb|AAM00878.1|AF486556_4 MloA [Campylobacter je... 59 4e-07
gi|148262509|ref|YP_001229215.1| filamentation induced by c... 59 4e-07
gi|95930312|ref|ZP_01313049.1| filamentation induced by cAM... 59 4e-07
gi|17548130|ref|NP_521532.1| hypothetical protein RSc3413 [... 59 5e-07
gi|149195894|ref|ZP_01872950.1| hypothetical protein LNTAR_... 59 5e-07
gi|19881262|gb|AAM00868.1|AF486554_4 MloA [Campylobacter je... 59 6e-07
gi|110601510|ref|ZP_01389693.1| Filamentation induced by cA... 59 6e-07
gi|149195902|ref|ZP_01872958.1| Filamentation induced by cA... 59 7e-07
gi|68553070|ref|ZP_00592452.1| Filamentation induced by cAM... 59 7e-07
gi|91786226|ref|YP_547178.1| filamentation induced by cAMP ... 59 7e-07
gi|39995279|ref|NP_951230.1| Fic family protein [Geobacter ... 59 7e-07
gi|111017023|ref|YP_699995.1| hypothetical protein RHA1_ro0... 58 7e-07
gi|111024233|ref|YP_707205.1| conserved hypothetical protei... 58 8e-07
gi|150026196|ref|YP_001297022.1| hypothetical protein FP215... 58 8e-07
gi|146328187|emb|CAM58104.1| hypothetical protein [uncultur... 58 8e-07
gi|91201851|emb|CAJ74911.1| conserved hypothetical protein ... 58 9e-07
gi|21229533|ref|NP_635450.1| hypothetical protein XCC0055 [... 58 9e-07
gi|42560744|ref|NP_975195.1| Conserved hypothetical protein... 58 9e-07
gi|89902795|ref|YP_525266.1| filamentation induced by cAMP ... 58 1e-06
gi|123444285|ref|YP_001008253.1| conserved ypothetical prot... 58 1e-06
gi|153891801|ref|ZP_02012782.1| filamentation induced by cA... 58 1e-06
gi|114564993|ref|YP_752507.1| filamentation induced by cAMP... 57 1e-06
gi|111024218|ref|YP_707190.1| hypothetical protein RHA1_ro0... 57 1e-06
gi|145300534|ref|YP_001143375.1| hypothetical protein ASA_3... 57 1e-06
gi|15603635|ref|NP_246709.1| hypothetical protein PM1770 [P... 57 1e-06
gi|75676295|ref|YP_318716.1| filamentation induced by cAMP ... 57 1e-06
gi|106894246|ref|ZP_01361367.1| Filamentation induced by cA... 57 1e-06
gi|149195754|ref|ZP_01872811.1| Cell filamentation protein ... 57 1e-06
gi|114570865|ref|YP_757545.1| filamentation induced by cAMP... 57 2e-06
gi|148254735|ref|YP_001239320.1| hypothetical protein BBta_... 57 2e-06
gi|148265105|ref|YP_001231811.1| filamentation induced by c... 57 2e-06
gi|86139896|ref|ZP_01058462.1| hypothetical protein MED193_... 57 2e-06
gi|16119266|ref|NP_395972.1| hypothetical protein AGR_pAT_5... 57 2e-06
gi|37528115|ref|NP_931460.1| hypothetical protein plu4284 [... 57 2e-06
gi|17938969|ref|NP_535757.1| hypothetical protein Atu5385 [... 57 2e-06
gi|149195793|ref|ZP_01872850.1| Fic [Lentisphaera araneosa ... 57 2e-06
gi|120603652|ref|YP_968052.1| filamentation induced by cAMP... 57 2e-06
gi|16119611|ref|NP_396317.1| hypothetical protein AGR_pAT_5... 57 3e-06
gi|78189403|ref|YP_379741.1| hypothetical protein Cag_1441 ... 57 3e-06
gi|146279797|ref|YP_001169955.1| hypothetical protein Rsph1... 56 3e-06
gi|67938587|ref|ZP_00531110.1| Filamentation induced by cAM... 56 3e-06
gi|109728744|ref|ZP_01380155.1| hypothetical protein RbelO_... 56 3e-06
gi|146343190|ref|YP_001208238.1| hypothetical protein BRADO... 56 3e-06
gi|16263601|ref|NP_436394.1| hypothetical protein SMa2105 [... 56 3e-06
gi|88795427|ref|ZP_01111124.1| hypothetical protein MADE_10... 56 3e-06
gi|24461719|gb|AAN62288.1|AF440524_75 conserved hypothetica... 56 4e-06
gi|145226099|ref|YP_001136753.1| filamentation induced by c... 56 4e-06
gi|50119466|ref|YP_048633.1| hypothetical protein ECA0515 [... 56 4e-06
gi|37527785|ref|NP_931130.1| hypothetical protein plu3930 [... 56 4e-06
gi|119857519|ref|ZP_01638947.1| filamentation induced by cA... 56 4e-06
gi|78062941|ref|YP_372849.1| Filamentation induced by cAMP ... 55 5e-06
gi|106887182|ref|ZP_01354498.1| Filamentation induced by cA... 55 5e-06
gi|114045847|ref|YP_736397.1| filamentation induced by cAMP... 55 5e-06
gi|17158508|ref|NP_477928.1| wsv406 [Shrimp white spot synd... 55 5e-06
gi|57505046|ref|ZP_00370995.1| Fic family protein, putative... 55 6e-06
gi|37528688|ref|NP_932033.1| hypothetical protein plu4880 [... 55 6e-06
gi|148545926|ref|YP_001266028.1| filamentation induced by c... 55 6e-06
gi|153870740|ref|ZP_02000076.1| Fic protein family [Beggiat... 55 7e-06
gi|113460362|ref|YP_718423.1| hypothetical protein HS_0216 ... 55 7e-06
gi|125718415|ref|YP_001035548.1| hypothetical protein SSA_1... 55 7e-06
gi|123443566|ref|YP_001007539.1| hypothetical protein YE336... 55 8e-06
gi|124127028|gb|ABM92267.1| FIC protein [Shrimp white spot ... 55 9e-06
gi|21673509|ref|NP_661574.1| hypothetical protein CT0678 [C... 55 9e-06
gi|149189405|ref|ZP_01867690.1| hypothetical protein VSAK1_... 55 9e-06
gi|78188948|ref|YP_379286.1| hypothetical protein Cag_0980 ... 55 9e-06
gi|46143859|ref|ZP_00133829.2| COG3177: Uncharacterized con... 54 1e-05
>gi|42525580|ref|NP_970678.1| fic family protein [Treponema denticola ATCC 35405]
gi|41815591|gb|AAS10559.1| fic family protein [Treponema denticola ATCC 35405]
Length = 348
Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats.
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA
Sbjct: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL 120
IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL
Sbjct: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL 120
Query: 121 YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV 180
YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV
Sbjct: 121 YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV 180
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY
Sbjct: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKI 300
DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKI
Sbjct: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKI 300
Query: 301 GRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK 348
GRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK
Sbjct: 301 GRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK 348
>gi|156864342|gb|EDO57773.1| hypothetical protein CLOL250_01519 [Clostridium sp. L2-50]
Length = 348
Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats.
Identities = 291/348 (83%), Positives = 323/348 (92%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
MR FNYS IK QKWDS LGLIAAIYKEAGKQEMYL+QRPEEL+KLVEIAKIQSTEASNA
Sbjct: 1 MRNFNYSAIKYQKWDSEILGLIAAIYKEAGKQEMYLRQRPEELDKLVEIAKIQSTEASNA 60
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL 120
IEGIVTTSTR++QLV+EKTTPKNRDEQEIAGYRDVLN+IH+SFDAIP+++NYILQLHK+L
Sbjct: 61 IEGIVTTSTRMRQLVEEKTTPKNRDEQEIAGYRDVLNVIHDSFDAIPITKNYILQLHKML 120
Query: 121 YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV 180
YSHMNNP+AG+ K+VQNYISA Y D H E+LFTPLAPFET EALD+ICEEYNRVIGNME+
Sbjct: 121 YSHMNNPLAGQTKNVQNYISATYPDGHVEVLFTPLAPFETQEALDRICEEYNRVIGNMEL 180
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR+GFYVGKY+SLEAKIAKNKDLYY
Sbjct: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRSGFYVGKYVSLEAKIAKNKDLYY 240
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKI 300
+AL AQ GWH+G EDVVPFIKYLLGT+LAAY+DF DR ALVEIKLPALE VRRA+ NKI
Sbjct: 241 EALAAAQPGWHDGTEDVVPFIKYLLGTILAAYKDFEDRMALVEIKLPALEMVRRASHNKI 300
Query: 301 GRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK 348
GRF KQDIRELCP+LS SSIEG LRKLV++GEL++EG GKN CY+ ++
Sbjct: 301 GRFNKQDIRELCPTLSDSSIEGALRKLVASGELRKEGKGKNTCYFGVR 348
>gi|23464807|ref|NP_695410.1| narrowly conserved hypothetical protein [Bifidobacterium longum
NCC2705]
gi|23325387|gb|AAN24046.1| narrowly conserved hypothetical protein [Bifidobacterium longum
NCC2705]
Length = 356
Score = 280 bits (717), Expect = 7e-74, Method: Composition-based stats.
Identities = 150/357 (42%), Positives = 212/357 (59%), Gaps = 14/357 (3%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
MR F+Y E T L+AAI++ G+Q + RP+ L LV +A+IQST+ASN
Sbjct: 1 MRSFDYIESGKTLLTPHTTSLLAAIHEAKGRQSIQTTIRPDILGTLVAVARIQSTDASNR 60
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL 120
IEGI T+ +R+ LV EK TP+NR+E+EIAGYRD L+ IHES D IP++ N ILQLH+ L
Sbjct: 61 IEGISTSDSRLNDLVSEKATPRNRNEEEIAGYRDALSAIHESHDYIPITPNVILQLHRDL 120
Query: 121 YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV 180
+ H AG K N I + + + F P + T E +++ C Y + I +
Sbjct: 121 FRHTPLTFAGHFKDSDNVIIERDAHGTSTVRFAPPSALATPELIERACSAYTQAIRDGHT 180
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
+PL+AI +FI DF CIHPFNDGNGRMSRLLT L+LYRNG+ VGKYIS+E I ++K YY
Sbjct: 181 DPLLAIAMFILDFTCIHPFNDGNGRMSRLLTLLMLYRNGYMVGKYISIEHLIEQSKSTYY 240
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFAL-----------VEIKLPAL 289
+AL + GW + D PF YLLG +L+A ++F +R L V K +
Sbjct: 241 EALAASTQGWDDNANDYAPFTNYLLGIILSACKEFDERINLTAGGRAQGAPRVATKGTRI 300
Query: 290 ETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYR 346
E + +L + +K DI P S ++IE L+ L+ +G + + G+G++ Y +
Sbjct: 301 EALLDQSLVPL---SKADILARMPDTSTTTIERTLKSLLDSGTIIKIGAGRSTRYVK 354
>gi|58338033|ref|YP_194618.1| hypothetical protein LBA1780 [Lactobacillus acidophilus NCFM]
gi|58255350|gb|AAV43587.1| hypothetical protein LBA1780 [Lactobacillus acidophilus NCFM]
Length = 351
Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats.
Identities = 136/346 (39%), Positives = 216/346 (62%), Gaps = 2/346 (0%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
M+ F+Y + N + ++ + + IY+ G+ + EEL+KLV +AKIQST+ASN
Sbjct: 1 MKKFDYQTLNNLQLNNTLINKLTTIYQLRGETSSFEIDYHEELKKLVAVAKIQSTDASNR 60
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL 120
IEGI T+ +R+ +++ +K P++RDE+EIAGYRDVL++IHE++ +P+++N IL +H +L
Sbjct: 61 IEGIYTSDSRLNKIMSDKVEPRDRDEREIAGYRDVLSLIHENYRYMPITKNTILSMHNML 120
Query: 121 YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV 180
+ + + G K + N I A Y+D H E+ F P F + +D++C++YN ++
Sbjct: 121 FKYAGDSWGGHFKDINNKIIAKYADGHEEVRFNPPEAFLVPDLIDELCKQYNEAFERGDI 180
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
PLI + DF+ IHPF DGNGRMSRLL L +YR+GF VGKYISLE I +K+ YY
Sbjct: 181 SPLILSAALVFDFVSIHPFRDGNGRMSRLLMLLTMYRSGFEVGKYISLEKIIEDSKESYY 240
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALV--EIKLPALETVRRAALN 298
D L + +GW++ + D PFI Y LG V+ AYR+ +R LV +L A + + +
Sbjct: 241 DVLAASSVGWNDNQNDYAPFINYYLGVVVKAYRELIERIGLVHNHKELKADKLILKTLQQ 300
Query: 299 KIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
++ ++ ++ EL P S ++I+ L++L +++ G GKNI Y
Sbjct: 301 QLRPLSRAELVELIPQYSQTTIQRNLKRLKDERKIQSIGKGKNIKY 346
>gi|68053725|ref|ZP_00537890.1| Filamentation induced by cAMP protein Fic [Exiguobacterium
sibiricum 255-15]
gi|68009503|gb|EAM88713.1| Filamentation induced by cAMP protein Fic [Exiguobacterium
sibiricum 255-15]
Length = 347
Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats.
Identities = 147/342 (42%), Positives = 211/342 (61%), Gaps = 4/342 (1%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
MR + Y + T+ LI+ I + GKQ++Y +Q P+ L+ L ++A IQST+ASNA
Sbjct: 1 MRNYTYRYLNTIALPMETVRLISRINEYKGKQDLYKQQAPQVLDTLRDVAVIQSTKASNA 60
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL 120
IEGIV T +R+ ++ + P +R E EIAGYRDVLN+IH S IP++ N +LQLHK L
Sbjct: 61 IEGIVVTESRLHTIMSKSADPADRSEAEIAGYRDVLNLIHASARDIPINANVLLQLHKEL 120
Query: 121 YSHMNNPM-AGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNME 179
Y + P+ GR K+V N IS ++ D F P+ FET ++ +C+ +
Sbjct: 121 YKFV--PVEGGRWKNVDNEISESFPDGTRRTRFVPVPAFETPASVQALCDSLRERRQQED 178
Query: 180 VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLY 239
V+PLI +F+ DFL IHPFNDGNGRMSRLLT LLLY+ GF VG+YISLE + K+ Y
Sbjct: 179 VDPLILTSLFVLDFLSIHPFNDGNGRMSRLLTLLLLYQEGFEVGRYISLEKIVESRKEDY 238
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEI-KLPALETVRRAALN 298
Y++L + I WH+ ++D P++ YLL T+LAAY++ DR L+ +R+ +
Sbjct: 239 YESLRLSSIHWHQNQQDPFPWVNYLLSTILAAYKELEDRVGLITTGNQNKAGRIRQFVES 298
Query: 299 KIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
+I FTK D+R CP +S ++I LR+L G +K G G+
Sbjct: 299 RITPFTKADVRNACPDVSEATINRLLRELRDEGLIKPSGRGR 340
>gi|46190654|ref|ZP_00121191.2| COG3177: Uncharacterized conserved protein [Bifidobacterium longum
DJO10A]
Length = 314
Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats.
Identities = 134/312 (42%), Positives = 190/312 (60%), Gaps = 14/312 (4%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
LV +A+IQST+ASN IEGI T+ +R+ LV EK TP+NR+E+EIAGYRD L++IHES D
Sbjct: 4 LVAVARIQSTDASNRIEGISTSDSRLNDLVSEKVTPRNRNEEEIAGYRDALSVIHESHDY 63
Query: 106 IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALD 165
IP++ N ILQLH+ L+ H AG K N I + + + F P + T E ++
Sbjct: 64 IPITPNVILQLHRDLFRHTPLTFAGHFKDSDNVIIERDAHGTSTVRFAPPSALVTPELIE 123
Query: 166 KICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKY 225
+ C Y + I + +PL+AI +FI DF CIHPFNDGNGRMSRLLT L+L RNG+ VGKY
Sbjct: 124 RACSAYTQAIRDGHTDPLLAIAMFILDFTCIHPFNDGNGRMSRLLTLLMLCRNGYMVGKY 183
Query: 226 ISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFAL---- 281
IS+E I ++K YY+AL + GW + D PF YLLG +L+A ++F +R L
Sbjct: 184 ISIEHLIEQSKSTYYEALAASTQGWDDNANDYAPFTNYLLGIILSACKEFDERINLTAGG 243
Query: 282 -------VEIKLPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELK 334
V K +E + +L + +K DI P S ++IE L+ L+ +G +
Sbjct: 244 RAQGAPRVATKGTRIEALLDQSLVPL---SKADILARMPDTSTTTIERTLKSLLDSGTII 300
Query: 335 REGSGKNICYYR 346
+ G+G++ Y +
Sbjct: 301 KIGAGRSTRYVK 312
>gi|139438367|ref|ZP_01771883.1| Hypothetical protein COLAER_00873 [Collinsella aerofaciens ATCC
25986]
gi|133775906|gb|EBA39726.1| Hypothetical protein COLAER_00873 [Collinsella aerofaciens ATCC
25986]
Length = 410
Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 138/346 (39%), Positives = 201/346 (58%), Gaps = 2/346 (0%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
MR F+Y+ + + + L+ +I + G+Q + +PE L L+E AKIQST +SN
Sbjct: 1 MRQFDYTTVPAELEATPITNLLLSIREHKGRQLALSQVKPELLSSLMEEAKIQSTRSSNG 60
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL 120
+EGIVTT R+K ++ P +R E+EIAGYRDVL++IHE D+IP++ + ILQLH+ L
Sbjct: 61 LEGIVTTQKRLKAIMAYSAKPSSRAEEEIAGYRDVLSLIHEQHDSIPVTPSVILQLHRDL 120
Query: 121 YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV 180
+H G K N I + + + F P + T + + C+ N +
Sbjct: 121 MAHTAISYGGHWKDSDNEIVSIDDQGNRFVRFRPPSALATPGLIKEACQSLNDALSRQVC 180
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
+PL+ FI DF+ IHPFNDGNGRMSRLLTTLLL + G+ V +YIS+E I NK LYY
Sbjct: 181 DPLLISLRFIFDFVSIHPFNDGNGRMSRLLTTLLLEKTGYDVARYISIERLIEDNKALYY 240
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAAL--N 298
+AL + GW+E + VPFI+++LGT LAAYR R + P + R A L
Sbjct: 241 NALAASSTGWNENQNTEVPFIRFMLGTTLAAYRQLEQRTLIESSTRPMSKQARIAVLFQQ 300
Query: 299 KIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
+ G K DIR CP +S +++ L +LVS +++ G+G++ Y
Sbjct: 301 RPGVIKKSDIRSNCPDISEVTVKRTLGQLVSCSAIEKTGAGRSTGY 346
>gi|46446552|ref|YP_007917.1| hypothetical protein pc0918 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46400193|emb|CAF23642.1| hypothetical protein [Candidatus Protochlamydia amoebophila UWE25]
Length = 317
Score = 240 bits (612), Expect = 1e-61, Method: Composition-based stats.
Identities = 134/308 (43%), Positives = 189/308 (61%), Gaps = 2/308 (0%)
Query: 34 MYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYR 93
MY KQ PE L+ L ++A I+S+E+SN +EGI RI LV + + P +R EQEIAGYR
Sbjct: 1 MYFKQSPEILKNLQQVAAIESSESSNRLEGITAPHNRIADLVTKNSAPIDRSEQEIAGYR 60
Query: 94 DVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
D LN+IH+S + L+ N ILQLH LY + + G+ K + N I+ +SD I F
Sbjct: 61 DALNLIHQSGQYMRLTNNVILQLHSWLYRYQSQS-GGQWKKLDNQITEIHSDGTKRIRFN 119
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
P + FET A+ + E Y I +++ EPLI +PV I DFLCIHPF+DGNGR +RLLT L
Sbjct: 120 PTSAFETPSAMHALIEGYETNIQSIQKEPLIILPVTILDFLCIHPFSDGNGRTARLLTLL 179
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYR 273
LLY + VG+YISLE ++K+ YY L ++ GWHEG+ DV+P++ Y G +L AY
Sbjct: 180 LLYHFDYQVGRYISLERIFEESKESYYATLEKSSKGWHEGKHDVMPWMTYFWGVLLRAYN 239
Query: 274 DFADRFALVEIKLPALET-VRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGE 332
+F R ++I + +R+ A IG F DI + CP++S +I LR+L G
Sbjct: 240 EFEARVGTLKIGQGSKNAYIRQTAERMIGPFAISDIEKACPAVSRDTIRLVLRQLRDEGI 299
Query: 333 LKREGSGK 340
+ +G G+
Sbjct: 300 IIPQGKGR 307
>gi|114568053|ref|YP_755207.1| hypothetical protein Swol_2548 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114338988|gb|ABI69836.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 348
Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats.
Identities = 140/333 (42%), Positives = 198/333 (59%), Gaps = 22/333 (6%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
+ LI+ I + GKQ +Y +Q PE L L +A IQST ASN++EGI TR+ +++ K
Sbjct: 19 VSLISKINEYKGKQVLYNQQAPEVLNTLKNVAIIQSTRASNSLEGITIKDTRLIDIMQNK 78
Query: 79 TTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNY 138
P NR E EIAGYRDVL IH S+DAIP+ + +LQ H+ LY ++ G K+ N
Sbjct: 79 VQPANRSEGEIAGYRDVLATIHSSYDAIPVKPSILLQFHRDLYRFISLE-GGSWKNSDNA 137
Query: 139 ISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHP 198
I Y D + F P++ F T A++++C+ YN+ + E++ L+ I I DFLCIHP
Sbjct: 138 IEEVYPDGSKFVRFNPVSSFATPGAIEELCKFYNQYSNSGEIDSLMLISATILDFLCIHP 197
Query: 199 FNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVV 258
F DGNGRM+RLLT LLLY+ G+ VG++ISLE I ++KD YYD L ++ WHEG+ D++
Sbjct: 198 FCDGNGRMARLLTLLLLYKEGYEVGRFISLEQIIEESKDAYYDTLYQSSQNWHEGKHDLL 257
Query: 259 PFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNK-----------IGRFTKQD 307
+ +YLLG +LAAY++ DR V RA NK + F+ D
Sbjct: 258 IWSEYLLGIILAAYKELMDRVG----------KVSRARGNKAMRVEETIDHFVSNFSIND 307
Query: 308 IRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
IR CP +S S+I L KL A +++ G G+
Sbjct: 308 IRRRCPDISPSTINRVLAKLRDANKIEVLGIGR 340
>gi|33599896|ref|NP_887456.1| hypothetical protein BB0907 [Bordetella bronchiseptica RB50]
gi|33567493|emb|CAE31406.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 348
Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats.
Identities = 134/330 (40%), Positives = 194/330 (58%), Gaps = 4/330 (1%)
Query: 13 KWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIK 72
++D + + + GKQ++Y Q PE L+ L +IA ++STE+SN +EG+V +R+K
Sbjct: 13 RFDGTQAATLRTLGEYQGKQQLYAAQSPEALKGLRQIAVVESTESSNRLEGVVVAPSRLK 72
Query: 73 QLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAG-R 131
LV PKNR EQEIAGYRD L +IHES +P S+ +LQLH +LY +M P AG R
Sbjct: 73 SLVLRNAMPKNRSEQEIAGYRDALALIHESATHMPFSEGVVLQLHTLLYRYM--PQAGGR 130
Query: 132 IKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH 191
K+ N I +SD + + F P+A T A+ + Y + +PL+ +P+ +
Sbjct: 131 WKATNNDIIERHSDGTSRLRFQPVAAHLTPMAMADLTGRYASALDQHLADPLVLVPLAML 190
Query: 192 DFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWH 251
DFLCIHPF DGNGRMSRLLT LLLY + VG+YISLE + K+ YY+ L + GWH
Sbjct: 191 DFLCIHPFPDGNGRMSRLLTLLLLYHFDYAVGRYISLERIFEETKEGYYETLEASSQGWH 250
Query: 252 EGEEDVVPFIKYLLGTVLAAYRDFADRFALVEI-KLPALETVRRAALNKIGRFTKQDIRE 310
+G+ DV P++ Y G +L AYR+F +R +E + + VR L + F+ +I E
Sbjct: 251 QGQHDVKPWLDYFWGALLRAYREFEERVGTIERGRGSKGDRVRAEILGRSQPFSISEIEE 310
Query: 311 LCPSLSISSIEGGLRKLVSAGELKREGSGK 340
CP +S + LR + S G ++ G G+
Sbjct: 311 ACPGVSRDMVRLVLRAMKSEGLIESTGKGR 340
>gi|33594040|ref|NP_881684.1| hypothetical protein BP3118 [Bordetella pertussis Tohama I]
gi|33564114|emb|CAE43386.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
Length = 348
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 131/329 (39%), Positives = 193/329 (58%), Gaps = 4/329 (1%)
Query: 14 WDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQ 73
+D + + + + GKQ++Y Q PE L+ L +IA ++STE+SN +EG+V +R+K
Sbjct: 14 FDGTQVATLRTLGEYQGKQQLYAAQSPEALKGLRQIAVVESTESSNRLEGVVVAPSRLKS 73
Query: 74 LVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAG-RI 132
LV TPK+R EQEIAGYRD L +IHES +P S+ +LQLH +LY +M P AG R
Sbjct: 74 LVIRNATPKSRSEQEIAGYRDALALIHESAAHMPFSEGVVLQLHTLLYRYM--PQAGGRW 131
Query: 133 KSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHD 192
K+ N I + D + + F P+A T A+ + Y + +PL+ +P+ + D
Sbjct: 132 KATNNDIIERHPDGTSRLRFQPVASHLTPMAMADLTGRYATALDQHLADPLVLVPLAMLD 191
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
LCIHPF DGNGRMSRLLT LLLY + VG+YISLE + K+ YY+ L + GW++
Sbjct: 192 LLCIHPFPDGNGRMSRLLTLLLLYHFDYAVGRYISLERIFEETKESYYETLEASSQGWYQ 251
Query: 253 GEEDVVPFIKYLLGTVLAAYRDFADRFALVEI-KLPALETVRRAALNKIGRFTKQDIREL 311
G+ DV P++ Y G +L AYR+F +R +E + + VR L + F+ +I E
Sbjct: 252 GQHDVKPWLDYFWGALLRAYREFEERVGTIERGRGSKGDRVRAEVLGRSLPFSISEIEEA 311
Query: 312 CPSLSISSIEGGLRKLVSAGELKREGSGK 340
CP +S + LR + S G ++ G G+
Sbjct: 312 CPGVSRDMVRLVLRAMKSEGLIESTGKGR 340
>gi|146283519|ref|YP_001173672.1| fic family protein [Pseudomonas stutzeri A1501]
gi|145571724|gb|ABP80830.1| fic family protein [Pseudomonas stutzeri A1501]
Length = 353
Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats.
Identities = 132/336 (39%), Positives = 194/336 (57%), Gaps = 4/336 (1%)
Query: 13 KWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIK 72
++D + A+ + GKQ++Y Q PE L+ L +IA ++STE+SN +EG+V +R+K
Sbjct: 13 RFDGTQAATLRALGEYQGKQQLYAAQSPEALKGLRQIAVVESTESSNRLEGVVVAPSRLK 72
Query: 73 QLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAG-R 131
LV PK+R EQEIAGYRD L +IHES + ++ LQLH ILY +M P AG R
Sbjct: 73 SLVIRNAAPKSRSEQEIAGYRDALALIHESAAHMTFNEGVTLQLHTILYRYM--PQAGGR 130
Query: 132 IKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH 191
K+ N I + D + + F P+A T A+ + Y + +PL+ +P+ +
Sbjct: 131 WKATNNDIIERHPDGTSRLRFQPVAAHLTPMAMADMTRHYAIALDQHLADPLVLVPLAML 190
Query: 192 DFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWH 251
DFLCIHPF DGNGRMSRLLT LLLY + VG+YISLE + K+ YY+ L + GWH
Sbjct: 191 DFLCIHPFPDGNGRMSRLLTLLLLYHFDYAVGRYISLERIFEETKEGYYETLEASSQGWH 250
Query: 252 EGEEDVVPFIKYLLGTVLAAYRDFADRFALVEI-KLPALETVRRAALNKIGRFTKQDIRE 310
+G+ DV P++ Y G +L AYR+F +R +E + + VR L + F+ +I E
Sbjct: 251 QGQHDVKPWLDYFWGALLRAYREFEERVGTIERGRGSKGDRVRAEVLGRTLPFSISEIEE 310
Query: 311 LCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYR 346
CP +S + LR + + G ++ G G+ + R
Sbjct: 311 ACPGVSRDMVRLVLRAMKADGLIESTGKGRGAKWLR 346
>gi|121610563|ref|YP_998370.1| filamentation induced by cAMP protein Fic [Verminephrobacter
eiseniae EF01-2]
gi|121555203|gb|ABM59352.1| filamentation induced by cAMP protein Fic [Verminephrobacter
eiseniae EF01-2]
Length = 353
Score = 207 bits (526), Expect = 1e-51, Method: Composition-based stats.
Identities = 117/329 (35%), Positives = 175/329 (53%), Gaps = 2/329 (0%)
Query: 13 KWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIK 72
++D L ++ A+ + GKQ+ +L Q PE L L +IA +S ASN +EG+V + R+K
Sbjct: 13 RFDGQQLAMLRALGEHRGKQQFHLAQPPEVLSDLRQIAVAESAAASNRLEGVVVGAQRLK 72
Query: 73 QLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRI 132
L+ + P++R EQE+AGYRD L IH+S P S+ ILQLH IL + P G
Sbjct: 73 SLLHKNAAPRSRSEQEVAGYRDALGWIHDSGAQRPFSEAGILQLHGILCRYRAQP-GGHW 131
Query: 133 KSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHD 192
KS + I ++ + I + P+A L + + + +PL+ +P+ I D
Sbjct: 132 KSAADDIIERRAEGNARIRWRPVAAHRAPMVLSDMVARHRSALDRHWADPLVLVPLAILD 191
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F CIHPF DGNGRM+RLLT LL G+ VG++ISLE + K Y + L + GWHE
Sbjct: 192 FFCIHPFPDGNGRMARLLTLQLLSHCGYAVGRFISLERIFEEAKAGYGETLQASAQGWHE 251
Query: 253 GEEDVVPFIKYLLGTVLAAYRDFADRF-ALVEIKLPALETVRRAALNKIGRFTKQDIREL 311
DV P++ Y +L AY +F +R ++V + E VR L + F+ I
Sbjct: 252 DRHDVAPWLNYFWRALLRAYGEFEERVGSIVRGRGAKGERVRAEILARHRPFSISGIEAA 311
Query: 312 CPSLSISSIEGGLRKLVSAGELKREGSGK 340
CP +S + LR + + G + G G+
Sbjct: 312 CPGISRDMVRVVLRSMKAQGLIAPTGKGR 340
>gi|121593256|ref|YP_985152.1| filamentation induced by cAMP protein Fic [Acidovorax sp. JS42]
gi|120605336|gb|ABM41076.1| filamentation induced by cAMP protein Fic [Acidovorax sp. JS42]
Length = 346
Score = 205 bits (521), Expect = 4e-51, Method: Composition-based stats.
Identities = 114/342 (33%), Positives = 182/342 (53%), Gaps = 6/342 (1%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
M + I ++++ L ++ + ++ G+Q +++ Q PE L + +A S E+S
Sbjct: 1 MHSLSPEYIAKLRFNARQLAMLRTLGEQRGRQPLHIAQLPEVLNDVRRVAIADSIESSTR 60
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL 120
+ G+ R+K L EK TP+NR EQEIAGYRD L +I + D +PLS++ +LQLH L
Sbjct: 61 LNGVTVAGHRLKSLALEKVTPQNRAEQEIAGYRDALKLICDGGDRMPLSESIVLQLHATL 120
Query: 121 YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV 180
+ +M P G+ ++ + I S F P+A T ++ + Y +
Sbjct: 121 HRYMRQP-GGQWRTADSDIIEGLSGYS----FHPVAAHLTPVTMESLVARYRTALDQQLA 175
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
+PL+ +P+ I DFLCIHPF D N RM+RLL+ LL + VG++ISLE +K+ Y
Sbjct: 176 DPLVLVPLVIFDFLCIHPFPDNNCRMARLLSLQLLCHFDYAVGRFISLERIFENSKEDYC 235
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPAL-ETVRRAALNK 299
A+G + GWHEG ++ P+ Y GT+ AY +F DR +E A + VR L
Sbjct: 236 TAVGASLQGWHEGIHNITPWFDYFWGTLARAYEEFEDRIGTIERGRGAKGDRVRTEILKH 295
Query: 300 IGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKN 341
F+ +I + CP +S + LR + + G ++ G G+N
Sbjct: 296 RLPFSISEIEKACPGVSRDMVRLTLRTMKAEGLIEPTGKGRN 337
>gi|94268977|ref|ZP_01291340.1| Filamentation induced by cAMP protein Fic [delta proteobacterium
MLMS-1]
gi|93451391|gb|EAT02247.1| Filamentation induced by cAMP protein Fic [delta proteobacterium
MLMS-1]
Length = 375
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 109/289 (37%), Positives = 163/289 (56%), Gaps = 4/289 (1%)
Query: 30 GKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQ-LVKEKTTPKNRDEQE 88
GKQE+Y +Q P+ L+ L E A I+S +SN IEG+ +R++ LV K ++RDE+E
Sbjct: 59 GKQELYTRQSPQRLKALREHALIESAVSSNRIEGVSVEPSRVRDVLVSPKPLFRDRDEEE 118
Query: 89 IAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHT 148
+ GYRD L IH+ I +S I ++H + + + AG K I Y D
Sbjct: 119 VRGYRDALTWIHQDAQGILISNETIRRMHAMTRGRIWD--AGLYKEKDGDIIERYPDGRE 176
Query: 149 EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSR 208
+ F ++ +T A+D++ ++ + + PLIA+ F DFLCIHPF DGNGR+SR
Sbjct: 177 RVRFRTVSAKQTPAAVDQLVADWQSCLEERWIPPLIALAAFNLDFLCIHPFRDGNGRVSR 236
Query: 209 LLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
LL L Y+ GF VG+YISLE + +NKD YY+ L ++ GWHEGE D P+I Y+L +
Sbjct: 237 LLWLLQSYQLGFEVGRYISLERLVEQNKDRYYETLEQSSQGWHEGEHDPWPYINYVLFIL 296
Query: 269 LAAYRDFADRFALVEIKLPALETVRRAALNKI-GRFTKQDIRELCPSLS 316
AYR+F +R + + + + KI G F+ ++ CP +S
Sbjct: 297 KEAYREFVERVGETSVPRGSKTKLVLETIGKISGTFSLAELERACPGVS 345
>gi|94264267|ref|ZP_01288061.1| Filamentation induced by cAMP protein Fic [delta proteobacterium
MLMS-1]
gi|93455312|gb|EAT05519.1| Filamentation induced by cAMP protein Fic [delta proteobacterium
MLMS-1]
Length = 375
Score = 198 bits (503), Expect = 5e-49, Method: Composition-based stats.
Identities = 109/289 (37%), Positives = 163/289 (56%), Gaps = 4/289 (1%)
Query: 30 GKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQ-LVKEKTTPKNRDEQE 88
GKQE+Y +Q P+ L+ L E A I+S +SN IEG+ +R++ LV K ++RDE+E
Sbjct: 59 GKQELYTRQSPQRLKALREHALIESAVSSNRIEGVSVEPSRVRDVLVSPKPLFRDRDEEE 118
Query: 89 IAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHT 148
+ GYRD L IH+ I +S I ++H + + + AG K I Y D
Sbjct: 119 VRGYRDALTWIHQDAQGILISNETIRRMHAMTRGRIWD--AGLYKEKDGDIIERYPDGRE 176
Query: 149 EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSR 208
+ F ++ +T A+D++ ++ + + PLIA+ F DFLCIHPF DGNGR+SR
Sbjct: 177 RVRFRTVSAKQTPAAVDQLVADWQSCLEERWIPPLIALAAFNLDFLCIHPFRDGNGRVSR 236
Query: 209 LLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
LL L Y+ GF VG+YISLE + +NKD YY+ L ++ GWHEGE D P+I Y+L +
Sbjct: 237 LLWLLQSYQLGFEVGRYISLERLVEQNKDRYYETLEQSSQGWHEGEHDPWPYINYVLFIL 296
Query: 269 LAAYRDFADRFALVEIKLPALETVRRAALNKI-GRFTKQDIRELCPSLS 316
AYR+F +R + + A + K+ G F+ ++ CP +S
Sbjct: 297 KEAYREFVERVGETSEPRGSKTKLVLATIGKMSGTFSLAELERACPGVS 345
>gi|56475471|ref|YP_157060.1| hypothetical protein ebA65 [Azoarcus sp. EbN1]
gi|56311514|emb|CAI06159.1| conserved hypothetical protein [Azoarcus sp. EbN1]
Length = 348
Score = 191 bits (484), Expect = 9e-47, Method: Composition-based stats.
Identities = 114/314 (36%), Positives = 167/314 (53%), Gaps = 8/314 (2%)
Query: 30 GKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQ-LVKEKTTPKNRDEQE 88
GKQE+Y +Q P+ L+ L E A I+S +SN IEG+ +R++ L K ++RDE+E
Sbjct: 30 GKQELYTRQSPQRLKALREHALIESAVSSNRIEGVSVDPSRVRDILAAPKPLFRDRDEEE 89
Query: 89 IAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHT 148
+ GYRD L IH IP+ + + +L I + + AG K I Y D
Sbjct: 90 VRGYRDALAWIHAESATIPVDEETVKRLQAITRGQIWD--AGLYKERDGDIIERYPDGRE 147
Query: 149 EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSR 208
+ F + T + + ++ R V PLIA+ F DFLC+HPF DGNGR+SR
Sbjct: 148 RVRFRTVPAANTPSCMADLVTDWRRCQDERWVPPLIALAAFNLDFLCVHPFRDGNGRVSR 207
Query: 209 LLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
LL L Y+ G+ VG+YISLE I +NK+ YY+ L ++ GWHEG+ D +I Y+L +
Sbjct: 208 LLWLLQSYQLGYEVGRYISLERLIEQNKERYYETLEKSSQGWHEGKHDPWHYINYVLFIL 267
Query: 269 LAAYRDFADRFALVEIKLP---ALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLR 325
AY++FADR E K P + V A G F+ + CP +S + LR
Sbjct: 268 KTAYKEFADRVG--ETKAPRGVKTDQVLAAIQQFAGEFSVSQLELHCPGVSRDMVRRVLR 325
Query: 326 KLVSAGELKREGSG 339
+ +AG++ +G G
Sbjct: 326 EQQAAGKVGCQGRG 339
>gi|94272230|ref|ZP_01292091.1| Filamentation induced by cAMP protein Fic [delta proteobacterium
MLMS-1]
gi|93450195|gb|EAT01496.1| Filamentation induced by cAMP protein Fic [delta proteobacterium
MLMS-1]
Length = 305
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 105/282 (37%), Positives = 156/282 (55%), Gaps = 16/282 (5%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQ-LVKEKTTPKNRDEQEIAGYRDVLNIIHE 101
L+ L E A I+S +SN IEG+ +R++ LV K ++RDE+E+ GYRD L IH+
Sbjct: 2 LKALREHALIESAVSSNRIEGVSVEPSRVRDVLVSPKPLSRDRDEEEVRGYRDALTWIHQ 61
Query: 102 SFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETS 161
I +S I ++H + + + AG K I Y D + F ++ +T
Sbjct: 62 DAQGILISNETIRRMHAMTRGRIWD--AGLYKEKDGDIIERYPDGRERVRFRTVSAKQTP 119
Query: 162 EALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFY 221
A+D++ ++ + + PLIA+ F DFLCIHPF DGNGR+SRLL L Y+ GF
Sbjct: 120 AAVDQLVADWQSCLEERWIPPLIALAAFNLDFLCIHPFRDGNGRVSRLLWLLQSYQLGFE 179
Query: 222 VGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFAL 281
VG+YISLE + +NKD YY+ L ++ GWHEGE D P+I Y+L + AYR+F +R
Sbjct: 180 VGRYISLERLVEQNKDRYYETLEQSSQGWHEGEHDPWPYINYVLFILKEAYREFVERVG- 238
Query: 282 VEIKLP-------ALETVRRAALNKIGRFTKQDIRELCPSLS 316
E +P LET+ + + G F+ ++ CP +S
Sbjct: 239 -ETSVPRGSKTKLVLETIGKLS----GTFSLAELERACPGVS 275
>gi|153811513|ref|ZP_01964181.1| hypothetical protein RUMOBE_01905 [Ruminococcus obeum ATCC 29174]
gi|153814761|ref|ZP_01967429.1| hypothetical protein RUMTOR_00976 [Ruminococcus torques ATCC 27756]
gi|145847792|gb|EDK24710.1| hypothetical protein RUMTOR_00976 [Ruminococcus torques ATCC 27756]
gi|149832254|gb|EDM87339.1| hypothetical protein RUMOBE_01905 [Ruminococcus obeum ATCC 29174]
Length = 185
Score = 168 bits (425), Expect = 6e-40, Method: Composition-based stats.
Identities = 83/185 (44%), Positives = 117/185 (63%), Gaps = 1/185 (0%)
Query: 164 LDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVG 223
++++C + ++ L+ IP+FI DFLCIHPFNDGNGRMSRLLT LL Y+ G+ VG
Sbjct: 1 MEELCARFLEAWEADRIDKLVLIPMFILDFLCIHPFNDGNGRMSRLLTLLLFYKAGYIVG 60
Query: 224 KYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFA-LV 282
KYIS+E I K K+ YY+AL + GWHEGE PF+KY LG +L AY +F R L
Sbjct: 61 KYISMEMLIEKTKETYYEALQASSTGWHEGENSYEPFVKYYLGIMLKAYNEFESRVEHLK 120
Query: 283 EIKLPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNI 342
L + ++ NK+G+ TK++I ELCP +S ++E L LV +G + + G+G +
Sbjct: 121 HRSLSKPDRIKAVIDNKVGKITKKEIMELCPDISKITVERTLTNLVKSGYIAKVGAGPST 180
Query: 343 CYYRL 347
Y R+
Sbjct: 181 GYVRV 185
>gi|118578543|ref|YP_899793.1| filamentation induced by cAMP protein Fic [Pelobacter propionicus
DSM 2379]
gi|118501253|gb|ABK97735.1| filamentation induced by cAMP protein Fic [Pelobacter propionicus
DSM 2379]
Length = 349
Score = 164 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 114/338 (33%), Positives = 186/338 (55%), Gaps = 12/338 (3%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV 75
S L LIA + + G+ +M + P++L L +A I+S +S IEG + +++ L+
Sbjct: 11 SQVLNLIAELDEFKGRWDMLGRLAPDKLTSLKRVATIESVGSSTRIEGARLSDLQVEALL 70
Query: 76 K--EKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL--YSHMNNPMAGR 131
E + ++RDE+E+AGY + +N IH+S++ IP ++N+I QLH I YS + G
Sbjct: 71 ANLEMRSFRSRDEEEVAGYAEAMNTIHDSWEHIPFTENHIKQLHGITLKYSSKDTAHRGE 130
Query: 132 IKSVQNYISAAYSDNHT-EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFI 190
K++ N + A +D + ++F +PF+T + ++ + E+ PL+ I F+
Sbjct: 131 YKTLSNNVEAFDADGRSLGVIFETASPFDTPRLMAELVSGTVTALRERELHPLLVIGAFV 190
Query: 191 HDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGW 250
FL IHPF DGNGR+SR+LTTLLL ++G+ Y SLE + +NKD YY AL +Q
Sbjct: 191 VHFLAIHPFQDGNGRLSRVLTTLLLLQSGYRHVPYSSLERIVEENKDGYYRALRASQKQI 250
Query: 251 HEGEEDVVPFIKYLLGTVLAAYRDF----ADRFALVEIKLPALETVRRAALNKIGRFTKQ 306
+E + ++ + L T L +D +R L+E KL LE A + GR T
Sbjct: 251 RSEKEILDDWLHFFL-TSLKKQKDVLLGKIEREQLLE-KLAPLEEKILAIARERGRITIA 308
Query: 307 DIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
D L + + ++++ LR+LV G L++ G+GK Y
Sbjct: 309 DAVTLLAA-NRNTVKLHLRQLVQRGYLEQHGTGKGTWY 345
>gi|148263349|ref|YP_001230055.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
gi|146396849|gb|ABQ25482.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
Length = 349
Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats.
Identities = 114/338 (33%), Positives = 187/338 (55%), Gaps = 12/338 (3%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV 75
S L LIA + + G+ +M + P++L L +A I+S +S IEG + +++ L+
Sbjct: 11 SQILNLIAELDEFKGRWDMLGRLAPDKLTSLKRVATIESVGSSTRIEGARLSDLQVEALL 70
Query: 76 K--EKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL--YSHMNNPMAGR 131
E ++RDE+E+AGY + +N +H+S++ IP ++N+I QLH I YS + G
Sbjct: 71 ANLEMRPFRSRDEEEVAGYAEAMNTLHDSWEYIPFTENHIKQLHGITLKYSTKDAAHRGE 130
Query: 132 IKSVQNYISAAYSDNHT-EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFI 190
K++ N + A +D + ++F +PF+T + ++ + E+ PL+ I F+
Sbjct: 131 YKTLPNNVEAFDADGRSIGVIFETASPFDTPRLMAELVSGTVAALREGELHPLLVIGAFV 190
Query: 191 HDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGW 250
FL IHPF DGNGR+SR+LTTLLL ++G+ Y SLE + +NKD YY AL +Q
Sbjct: 191 VHFLAIHPFQDGNGRLSRVLTTLLLLQSGYRHVPYSSLERIVEENKDGYYRALRASQKLI 250
Query: 251 HEGEEDVVPFIKYLLGTVLAAYRDF----ADRFALVEIKLPALETVRRAALNKIGRFTKQ 306
EE++ ++++ L T L +D +R L+E KL LE A + GR T
Sbjct: 251 RSEEENLDNWLRFFL-TSLKKQKDVLLGKIEREQLLE-KLAPLEEKMLAIARERGRITIA 308
Query: 307 DIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
D L + + ++++ LR+LV G L++ G+GK Y
Sbjct: 309 DAVTLLAA-NRNTVKLHLRQLVQQGYLEQHGTGKGTWY 345
>gi|126699146|ref|YP_001088043.1| hypothetical protein CD1542 [Clostridium difficile 630]
gi|115250583|emb|CAJ68407.1| conserved hypothetical protein [Clostridium difficile 630]
Length = 346
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 102/324 (31%), Positives = 180/324 (55%), Gaps = 7/324 (2%)
Query: 7 SEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVT 66
S++KN + +++ I + G+Q +Y KQ E LE L + + + +E++ +
Sbjct: 7 SKLKNMYVNMNVARMLSKINEYKGRQLLYKKQPKEILENLEKKSLVDCSESTYIGNQRDS 66
Query: 67 TSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNN 126
++ +++L+ + TP++R+E I YRDV+ I+ ++++IP+S IL+LH LY ++
Sbjct: 67 SNFNLEKLISNEVTPRSREELSIVEYRDVVKTINSAYESIPISSQTILELHGYLYK-FSS 125
Query: 127 PMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAI 186
G KS ++I ++ +E + T + + +A+++ICE YN +I E++ LI I
Sbjct: 126 TRGGSYKSDNDFIE--HNLKPSEFISTDSSVNKVEKAVEEICEAYNTLIEEDEIDILILI 183
Query: 187 PVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRA 246
F+ DF+ IHPF +GN +M+R+L LLL +NG+ VG+YISL + YY L
Sbjct: 184 SAFVLDFILIHPFKEGNIKMARVLILLLLNKNGYEVGRYISLGKIFDDSSYEYYSNLNYL 243
Query: 247 QIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNK-IGRFTK 305
+ + D+ +I+Y L T+L AY D + + K + +N +G FTK
Sbjct: 244 KASIGSEKADMNAWIEYFLETILTAYEKLDDSLNISDKKRQTKTSRIEKIINSTLGYFTK 303
Query: 306 QDIRELCPSL---SISSIEGGLRK 326
+DIR+LCP + +I+ + LRK
Sbjct: 304 EDIRDLCPDIPEPTINRVFNNLRK 327
>gi|145955319|ref|ZP_01804323.1| hypothetical protein CdifQ_04001740 [Clostridium difficile
QCD-32g58]
Length = 346
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 101/324 (31%), Positives = 179/324 (55%), Gaps = 7/324 (2%)
Query: 7 SEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVT 66
S++KN + +++ I + G+Q +Y KQ E LE L + + + +E++ +
Sbjct: 7 SKLKNMYVNMNVARMLSKINEYKGRQLLYKKQPKEILENLEKKSLVDCSESTYIGNQRDS 66
Query: 67 TSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNN 126
++ +++L+ + TP++R+E I YRDV+ I+ ++++IP+S IL+LH LY ++
Sbjct: 67 SNFNLEKLISNEVTPRSREELSIVEYRDVVKTINSAYESIPISSQTILELHGYLYK-FSS 125
Query: 127 PMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAI 186
G KS ++I ++ +E + + + +A+++ICE YN +I E++ LI I
Sbjct: 126 TRGGSYKSDNDFIE--HNLKPSEFISIDSSVNKVEKAVEEICEAYNTLIEEDEIDILILI 183
Query: 187 PVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRA 246
F+ DF+ IHPF +GN +M+R+L LLL +NG+ VG+YISL + YY L
Sbjct: 184 SAFVLDFILIHPFKEGNIKMARVLILLLLNKNGYEVGRYISLGKIFDDSSYEYYSNLNYL 243
Query: 247 QIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNK-IGRFTK 305
+ + D+ +I+Y L T+L AY D + + K + +N +G FTK
Sbjct: 244 KASIGSEKADMNAWIEYFLETILTAYEKLDDSLNISDKKRQTKTSRIEKIINSTLGYFTK 303
Query: 306 QDIRELCPSL---SISSIEGGLRK 326
+DIR+LCP + +I+ + LRK
Sbjct: 304 EDIRDLCPDIPEPTINRVFNNLRK 327
>gi|30250050|ref|NP_842120.1| Bacterial regulatory proteins, AsnC family [Nitrosomonas europaea
ATCC 19718]
gi|30139157|emb|CAD86021.1| Bacterial regulatory proteins, AsnC family [Nitrosomonas europaea
ATCC 19718]
Length = 351
Score = 154 bits (389), Expect = 8e-36, Method: Composition-based stats.
Identities = 111/337 (32%), Positives = 180/337 (53%), Gaps = 14/337 (4%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
L LIA I + GK E+ PE L +L ++A I+S +S IEG T +++ L+
Sbjct: 13 LKLIAEIDEFKGKWEVLKNLSPERLRQLRKVATIESIGSSTRIEGAKLTDMQVETLLSNL 72
Query: 79 TTP--KNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNP--MAGRIKS 134
++ K RDEQE+AGY + ++I+ ++++ + +++N+I QLH+ L H N G K
Sbjct: 73 SSMSFKTRDEQEVAGYAEAMDIVFQAYEDMTITENHIRQLHQTLLRHSNKDERHRGEYKK 132
Query: 135 VQNYISAAYSDNHTE---ILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH 191
+ N++ A D H + ++F PF+T ++++ N+ I PL+ + VF+
Sbjct: 133 IDNHVVAI--DEHGKEIGVVFETATPFDTPRKMEELVRWVNKAITENSFHPLLIVAVFVV 190
Query: 192 DFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWH 251
FL IHPF DGNGR+SR+LTTL+L R G+ Y SLE+ + NKDLYY AL R Q
Sbjct: 191 VFLAIHPFQDGNGRLSRILTTLMLLRAGYSYVPYASLESVVEDNKDLYYKALRRTQTTLK 250
Query: 252 EGEEDVVPFIKYLLGTVLAAYRDFADRF----ALVEIKLPALETVRRAALNKIGRFTKQD 307
D P++ + L + + A + A + LPAL L K R + +
Sbjct: 251 TDSPDWEPWLGFFLRCLKKQKANLAAKIEKEKAADDTILPALAVQILELLKKHERLSIAE 310
Query: 308 IRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
+ E + + ++++ LR+LVS G ++R G + Y
Sbjct: 311 MVEHTGA-NRNTLKVRLRELVSTGRIQRHGKARATWY 346
>gi|114332370|ref|YP_748592.1| filamentation induced by cAMP protein Fic [Nitrosomonas eutropha
C91]
gi|114309384|gb|ABI60627.1| filamentation induced by cAMP protein Fic [Nitrosomonas eutropha
C91]
Length = 369
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 111/344 (32%), Positives = 173/344 (50%), Gaps = 22/344 (6%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
L LIA I + G PE L L +A I+S +S IEG T R+++L+
Sbjct: 34 LSLIARIDEFKGAWRALGTLAPERLSALRRVATIESIGSSTRIEGSKLTDRRVERLLSNL 93
Query: 79 TTPK--NRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPM--AGRIKS 134
RDEQE+AGY ++++++ S+ IP ++N+I QLH+IL H G+ K+
Sbjct: 94 AIQSFDTRDEQEVAGYAELMDLVFSSWQDIPFNENHIKQLHQILLHHSEKDAHHRGQYKT 153
Query: 135 VQNYISAAYSDNHTEI--LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHD 192
N + AA+ ++ T+I +F PF+T + ++ N + PL+ I +F+
Sbjct: 154 NSNSV-AAFDESGTQIGIVFETATPFDTPRLMAELASWVNDEREKGHLHPLLIIAIFVVV 212
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
FL IHPF DGNGR+SR+LTTLLL + G+ Y SLE+ I NK+ YY AL + Q
Sbjct: 213 FLEIHPFQDGNGRLSRVLTTLLLIQAGYAYVPYSSLESVIELNKEAYYLALHQTQGTIRA 272
Query: 253 GEEDVVPFIKYLLGTVLAAYRDFADRF--------ALVEIKLPALETVRRAALNKIGRFT 304
+ P++ + L ++ R + AL E+ L +E R IG
Sbjct: 273 EAPNWQPWLMFFLRSLAEQVRLLEKKVEREKIVLAALPELSLQIVEFAREHGRVTIGNAI 332
Query: 305 KQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK 348
K +S ++++ R LV G L ++GSG+ + +Y LK
Sbjct: 333 K------LTGVSRNTLKQHFRNLVEQGHLNQQGSGRGV-WYELK 369
>gi|42520245|ref|NP_966160.1| Fic family protein [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99035035|ref|ZP_01314831.1| hypothetical protein Wendoof_01000345 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42409983|gb|AAS14094.1| Fic family protein [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 348
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 104/334 (31%), Positives = 173/334 (51%), Gaps = 9/334 (2%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
L L+A I + G +++ PE L+ L +IA I+S +S IEG + ++QL+ +
Sbjct: 14 LKLVAEIDEFKGAWQLFGNLAPERLQMLKKIATIESIGSSTRIEGARLSDREVEQLLSKL 73
Query: 79 TTPKNR--DEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL--YSHMNNPMAGRIKS 134
T R DE+EIAGY V + ++F+ +P ++N I Q H L +S+ + G K
Sbjct: 74 DTRSFRSLDEREIAGYAYVCEEVFQNFNKMPFTENTIKQFHIWLLQFSYKDQRHMGEYKK 133
Query: 135 VQNYISA-AYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDF 193
N++ A S I+F +PFET+ + ++ ++ + + PL+ I +FI F
Sbjct: 134 FPNHVEAFDESGKSLGIVFETASPFETATQMQELIYWTSQQLEVKSLHPLLIIGIFIVTF 193
Query: 194 LCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEG 253
L IHPF DGNGR+SR+LTT LL + G+ Y SLE+ I NK+ YY AL R Q
Sbjct: 194 LAIHPFQDGNGRLSRILTTFLLLKLGYIYVPYSSLESIIESNKESYYLALRRTQQSLKTS 253
Query: 254 EEDVVPFIKYLLGTVLAAYRDFADRFA---LVEIKLPALETVRRAALNKIGRFTKQDIRE 310
D P++ + L ++ + + ++ + LP L A L+K GR T +D+
Sbjct: 254 SYDFNPWLIFFLRSLQKQKFHLEQKVSHEKVLNLYLPPLSAKVLALLSKHGRLTIKDLEN 313
Query: 311 LCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
+ + + ++++ + LV + + + G GK Y
Sbjct: 314 ITKA-NCNTLKKHVSNLVKSNHITQHGKGKATWY 346
>gi|68549088|ref|ZP_00588555.1| Filamentation induced by cAMP protein Fic [Pelodictyon
phaeoclathratiforme BU-1]
gi|68243937|gb|EAN26131.1| Filamentation induced by cAMP protein Fic [Pelodictyon
phaeoclathratiforme BU-1]
Length = 349
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 110/342 (32%), Positives = 174/342 (50%), Gaps = 25/342 (7%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVK-- 76
L LIA I + G P+ L L +A I+S +S IEG + +++L+
Sbjct: 14 LNLIAQIDEFKGAWRALSTLAPDRLSALRRVATIESIGSSTRIEGSKLSDREVERLLSNL 73
Query: 77 EKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQ 136
+ + RDEQE+AGY +++++ ES+ +IP ++N+I QLH+IL H R +
Sbjct: 74 KINSFDTRDEQEVAGYAGLMDLVFESWPSIPFNENHIKQLHQILLHHSEKDARHRGQYKT 133
Query: 137 NYISAAYSDNHTE---ILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDF 193
N S A D H + I+F PF+T+ + ++ + ++ PL+ I +F+ F
Sbjct: 134 NSNSVAAFDVHGKQLGIVFETATPFDTARLMAELVTWVKDERESAQLHPLLIIAIFVVLF 193
Query: 194 LCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEG 253
L IHPF DGNGR+SR+LTTLLL + G+ Y SLE+ I NK+ YY AL Q
Sbjct: 194 LGIHPFQDGNGRLSRVLTTLLLLQAGYAYVPYSSLESVIELNKEAYYLALRSTQGTIRTD 253
Query: 254 EEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKI-----------GR 302
+ P++ + L R +D+ +E K+ A E + A+L ++ GR
Sbjct: 254 APNWQPWLVFFL-------RSLSDQVNRLEKKV-AREKIVLASLPELSLQIVEFTREHGR 305
Query: 303 FTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
T D +L + ++++G R LV G L R GSG+ + Y
Sbjct: 306 ITIGDAIKLTGG-NRNTLKGHFRNLVERGHLIRHGSGRGVWY 346
>gi|75758486|ref|ZP_00738607.1| Fic family protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74494013|gb|EAO57108.1| Fic family protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 348
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 103/329 (31%), Positives = 173/329 (52%), Gaps = 2/329 (0%)
Query: 21 LIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAI-EGIVTTSTRIKQLVKEKT 79
LI I + G+ E+Y K+ P LEKL ++Q T+ A+ + + T+ R+K+L+
Sbjct: 20 LIGKIKQYQGRLEVYEKEFPCTLEKLQISTQLQHTKDFVAMYKNLKITNKRLKELITYDL 79
Query: 80 TPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYI 139
+PK E EI+ Y D L++IH +++ + + + IL++H L+ + + +G + +
Sbjct: 80 SPKTMIEDEISCYVDALSLIHNNYERLTIDPSTILEIHFQLFKYATSD-SGTWRKQDILL 138
Query: 140 SAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPF 199
N + + PL E EA+ +CEEYN ++ +++PLI I F+ +F+CI PF
Sbjct: 139 EEHEQLNFSFYCYRPLTIKEIPEAVKNLCEEYNYLLNQKDIDPLILICNFVLNFICIFPF 198
Query: 200 NDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVP 259
GNGRM RLL +LLL ++ + KYISL+ I K + YYDAL ++ WH E +V
Sbjct: 199 ESGNGRMVRLLISLLLLQSKHSLVKYISLDKIIKKYERDYYDALYKSSANWHFQEHNVSF 258
Query: 260 FIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQDIRELCPSLSISS 319
+K LL +L AY++ ++K ++ L + FTK+ IR + +S S+
Sbjct: 259 ILKCLLHIILEAYKELDVHITSYQLKGNKSFKIKEYILKQELPFTKEAIRMVFSDVSPST 318
Query: 320 IEGGLRKLVSAGELKREGSGKNICYYRLK 348
I L +K G+N + + K
Sbjct: 319 INKAFACLQEEKLIKLISKGRNAVWTKTK 347
>gi|110598084|ref|ZP_01386363.1| Filamentation induced by cAMP protein Fic [Chlorobium ferrooxidans
DSM 13031]
gi|110340343|gb|EAT58837.1| Filamentation induced by cAMP protein Fic [Chlorobium ferrooxidans
DSM 13031]
Length = 363
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 107/340 (31%), Positives = 171/340 (50%), Gaps = 21/340 (6%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
L L+A I + G P+ L L +A I+S +S IEG + ++ L+
Sbjct: 14 LSLVARIDEFKGAWRALGMLAPDRLSALRRVATIESIGSSTRIEGSKLSDREVESLLSNL 73
Query: 79 TTP--KNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMA--GRIKS 134
+ RDEQE+AGY ++++++ ES+ IP ++N+I Q H+IL H G+ K+
Sbjct: 74 VIQSFETRDEQEVAGYAELMDLVFESWPNIPFNENHIKQFHQILLRHSGKDARHRGQYKT 133
Query: 135 VQNYISAAYSDNHTEI--LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHD 192
N + AA+ +N +I +F PF+T + ++ N ++ PL+ I +F+
Sbjct: 134 SSNSV-AAFDNNSKQIGIVFETATPFDTPRLMAELVAWVNDEREREQLHPLLIIAIFVVV 192
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
FL IHPF DGNGR+SR+LTTLLL + G+ Y SLE+ I NK+ YY AL + Q
Sbjct: 193 FLEIHPFQDGNGRLSRVLTTLLLLQAGYAYVPYSSLESVIELNKEAYYLALRQTQGLIRT 252
Query: 253 GEEDVVPFIKYLLGTVLAAYRDFADRF--------ALVEIKLPALETVRRAALNKIGRFT 304
+ P++ + L ++ R + +L EI L +E VR GR T
Sbjct: 253 DTPNWQPWLLFFLRSLADQVRRLEKKVEREKIVMTSLPEISLRIVEFVREH-----GRIT 307
Query: 305 KQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
+ L +S ++++ R LV G L + GSG+ + Y
Sbjct: 308 IGNAISLT-GISRNTLKVHFRNLVERGHLTQLGSGRGVWY 346
>gi|42520226|ref|NP_966141.1| Fic family protein [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|99034843|ref|ZP_01314756.1| hypothetical protein Wendoof_01000421 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42409964|gb|AAS14075.1| Fic family protein [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 360
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 86/253 (33%), Positives = 135/253 (53%), Gaps = 5/253 (1%)
Query: 21 LIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTT 80
LI A+ ++ K P+ +E+L + S+ ASN IEG T ++ L K
Sbjct: 25 LITAVDSVKNSWQITKKLLPQTIERLTHSVIVTSSGASNRIEGNRLTDKEVEDLYKNLRV 84
Query: 81 PK--NRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHK--ILYSHMNNPMAGRIKSVQ 136
K NRDEQEIAGY ++L +I + IP+S++ IL ++ +LYS + G+ K+
Sbjct: 85 KKFKNRDEQEIAGYLEMLTLIFHDYTDIPISESSILHINNQMLLYSEKDLYHRGKYKASS 144
Query: 137 NYISAAYSDNHT-EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLC 195
N + A + I+F P P+ + + ++ + Y+ + N PLI I F+ ++L
Sbjct: 145 NRVEAKDQNGKVVGIIFDPTPPYLVRKEVQELIDWYHWSLNNKFKHPLIIIANFVFEYLA 204
Query: 196 IHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEE 255
IHPF DGNGR SRL+T L+L + G+ +S E I NK YY AL + Q W G+E
Sbjct: 205 IHPFQDGNGRTSRLMTNLMLLQQGYDFVSIVSHEKIIETNKLDYYLALNKTQSSWKSGKE 264
Query: 256 DVVPFIKYLLGTV 268
D+ P++ + L +
Sbjct: 265 DISPWLIFFLNVL 277
>gi|58697195|ref|ZP_00372605.1| Fic family protein [Wolbachia endosymbiont of Drosophila simulans]
gi|58699093|ref|ZP_00373927.1| Fic family protein [Wolbachia endosymbiont of Drosophila ananassae]
gi|58534389|gb|EAL58554.1| Fic family protein [Wolbachia endosymbiont of Drosophila ananassae]
gi|58536487|gb|EAL59877.1| Fic family protein [Wolbachia endosymbiont of Drosophila simulans]
Length = 360
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 85/253 (33%), Positives = 135/253 (53%), Gaps = 5/253 (1%)
Query: 21 LIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTT 80
LI A+ ++ K P+ +E+L + S+ ASN IEG T ++ L K
Sbjct: 25 LITAVDSVKNSWQITKKLLPQTIERLTHSVIVTSSGASNRIEGNRLTDKEVEDLYKNLRV 84
Query: 81 PK--NRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHK--ILYSHMNNPMAGRIKSVQ 136
K NRDEQEIAGY ++L +I + IP+S++ IL ++ +LYS + G+ K+
Sbjct: 85 KKFKNRDEQEIAGYLEMLTLIFHDYTDIPISESSILHINNQMLLYSEKDLYHRGKYKASS 144
Query: 137 NYISAAYSDNHT-EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLC 195
N + A + I+F P P+ + + ++ + Y+ + N PLI + F+ ++L
Sbjct: 145 NRVEAKDQNGKVVGIIFDPTPPYLVRKEVQELIDWYHWSLNNKFKHPLIIVANFVFEYLA 204
Query: 196 IHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEE 255
IHPF DGNGR SRL+T L+L + G+ +S E I NK YY AL + Q W G+E
Sbjct: 205 IHPFQDGNGRTSRLMTNLMLLQQGYDFVSIVSHEKIIETNKLDYYLALNKTQSSWKSGKE 264
Query: 256 DVVPFIKYLLGTV 268
D+ P++ + L +
Sbjct: 265 DISPWLIFFLNVL 277
>gi|121611083|ref|YP_998890.1| filamentation induced by cAMP protein Fic [Verminephrobacter
eiseniae EF01-2]
gi|121555723|gb|ABM59872.1| filamentation induced by cAMP protein Fic [Verminephrobacter
eiseniae EF01-2]
Length = 351
Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats.
Identities = 103/334 (30%), Positives = 166/334 (49%), Gaps = 9/334 (2%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVK-- 76
L LIA+I + G P+ L L +A I+S +S IEG + + +L+
Sbjct: 14 LKLIASIDEFKGAWRALGTLAPDRLSALRRVATIESIGSSTRIEGSKLSDREVARLLSNL 73
Query: 77 EKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL--YSHMNNPMAGRIKS 134
+ + RDEQE+AGY +V+ ++ S+ I L++N+I QLH+ L YS + G K+
Sbjct: 74 QIKSFSTRDEQEVAGYAEVMELVFSSWQNITLTENHIKQLHRDLLTYSEKDAWHRGNYKT 133
Query: 135 VQNYISAAYSD-NHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDF 193
N + A D ++F PF+T ++ +N PL+ I +++ F
Sbjct: 134 STNSVVAFDEDGKQLGVVFETATPFDTPRLTTELVTWFNEERDAARFHPLLLIGIWVVVF 193
Query: 194 LCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEG 253
L IHPF DGNGR+SR+LTTLLL + G+ Y SLE+ I ++K+ YY AL + Q
Sbjct: 194 LEIHPFQDGNGRLSRVLTTLLLLQAGYAYVPYSSLESVIEQSKEAYYLALRQTQGTIRTE 253
Query: 254 EEDVVPFIKYLLGTVLAAYRDF---ADRFALVEIKLPALETVRRAALNKIGRFTKQDIRE 310
+ P++ + L + R +R +V LP L + GR T D
Sbjct: 254 SPNWQPWLVFFLRALAEQVRRLNRKVEREKIVLATLPELSLQIVEFAREHGRITMGDAIR 313
Query: 311 LCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
L + ++++ R LV+ G+L++ GSG+ + Y
Sbjct: 314 LTDG-NRNTLKQHFRSLVAHGQLRQYGSGRGVWY 346
>gi|117926787|ref|YP_867404.1| filamentation induced by cAMP protein Fic [Magnetococcus sp. MC-1]
gi|117610543|gb|ABK45998.1| filamentation induced by cAMP protein Fic [Magnetococcus sp. MC-1]
Length = 369
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 107/334 (32%), Positives = 172/334 (51%), Gaps = 9/334 (2%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVK-- 76
L LIA I + G PE L L +A I+S +S IEG + +++L+
Sbjct: 34 LSLIAEIDEFKGAWRALGTLAPERLSALRRVATIESIGSSTRIEGSKLSDREVERLLSNL 93
Query: 77 EKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKIL--YSHMNNPMAGRIKS 134
+ + + RDEQE+AGY + + ++ +S+ I +++N+I QLH+ L YS +N G+ K+
Sbjct: 94 QIKSFETRDEQEVAGYAETMELVFQSWADITITENHIKQLHRDLLKYSSKDNHHRGQYKT 153
Query: 135 VQNYISAAYSDN-HTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDF 193
N ++A D I+F PF+T ++++ N + + PL+ + F+ F
Sbjct: 154 TSNSVAAFDEDGRQIGIVFETATPFDTPRLIEELVAFVNEAVETKRLHPLLIVGFFVVIF 213
Query: 194 LCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEG 253
L IHPF DGNGR+SR+LTTLLL R G+ Y SLE+ I ++K+ YY AL + Q
Sbjct: 214 LEIHPFQDGNGRLSRILTTLLLLRVGYAYVPYSSLESVIEQSKEGYYLALRQTQGTIRTE 273
Query: 254 EEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALN---KIGRFTKQDIRE 310
+ P+I + L + + A + +I L AL + L + GR T DI
Sbjct: 274 APNWQPWITFFLRALQQQMKRLAKKVEREKIVLSALPEISVQILEYAREHGRVTIGDIAT 333
Query: 311 LCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
L ++ ++++ L +LV G L GSG+ Y
Sbjct: 334 LT-GVNRNTLKKHLSQLVEKGHLVLHGSGRGAWY 366
>gi|78188802|ref|YP_379140.1| regulatory proteins, AsnC family [Chlorobium chlorochromatii CaD3]
gi|78171001|gb|ABB28097.1| regulatory proteins, AsnC family [Chlorobium chlorochromatii CaD3]
Length = 349
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 108/337 (32%), Positives = 180/337 (53%), Gaps = 11/337 (3%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
L LIA I + G PE L L +A I+S +S IEG + +++L+
Sbjct: 14 LSLIAHIDEFKGAWRALGVLAPERLSALRRVATIESIGSSTRIEGSKLSDQEVERLLSNL 73
Query: 79 T--TPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMA--GRIKS 134
T T + RDEQE+AGY +++ ++ S+ IP ++N+I Q H++L SH + G K+
Sbjct: 74 TINTFETRDEQEVAGYAELMELLFTSWQYIPFNENHIKQFHQLLLSHSSKDARHRGTYKT 133
Query: 135 VQNYISAAYSDNHTE--ILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHD 192
N + AA+ +N + I+F +PF+T + ++ N+ ++ PL+ I +F+
Sbjct: 134 TSNSV-AAFDENGKQLGIVFQTASPFDTPFLMQELIAWVNQEREAKQLHPLLIIAIFVVV 192
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
FL IHPF DGNGR+SR LTTLLL + G+ Y SLE+ I NK+ YY AL + Q
Sbjct: 193 FLEIHPFQDGNGRLSRALTTLLLLQAGYAYVPYSSLESVIESNKEAYYVALRQTQGTIRS 252
Query: 253 GEEDVVPFIKYLLGTVLAA---YRDFADRFALVEIKLPALETVRRAALNKIGRFTKQDIR 309
+ ++ + L +++ ++ +R +V LP L +++ GR T +
Sbjct: 253 EVPNWQAWLLFFLRSLVEQVHRLQNKIEREHVVLAALPELALQIVEFVHQHGRITIGEAV 312
Query: 310 ELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYR 346
+L + + ++++ RKLV G LK++GSG+ + Y R
Sbjct: 313 KLTDA-NRNTLKVHFRKLVEQGYLKQQGSGRGVWYER 348
>gi|153864923|ref|ZP_01997647.1| conserved hypothetical protein [Beggiatoa sp. SS]
gi|152145583|gb|EDN72354.1| conserved hypothetical protein [Beggiatoa sp. SS]
Length = 266
Score = 134 bits (338), Expect = 7e-30, Method: Composition-based stats.
Identities = 86/262 (32%), Positives = 146/262 (55%), Gaps = 7/262 (2%)
Query: 89 IAGYRDVLNIIHESFDAIPLSQNYILQLHK--ILYSHMNNPMAGRIKSVQNYISAAYSDN 146
+AGY +V+ +I +S++ I L++N+I QLH+ ++YS + G K++ N ++A +
Sbjct: 1 MAGYAEVMELIFQSWENILLTENHIKQLHRDLLIYSQKDERHRGEYKTLSNSVAAFDENG 60
Query: 147 HT-EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGR 205
T I+F PFET+ + ++ +N+V ++ PL+ I +FI FL IHPF DGNGR
Sbjct: 61 KTIGIVFETATPFETARLMTELVNWHNQVQAEKQLHPLLIIGIFIVVFLAIHPFQDGNGR 120
Query: 206 MSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
+SR+LTTLLL + G+ Y SLE+ I +NK+ YY AL + Q + + P++K+ L
Sbjct: 121 LSRILTTLLLLQAGYAYVPYSSLESVIEQNKEGYYLALRQTQNTIRTDQPNWQPWLKFFL 180
Query: 266 GTVLAAYRDFADRFALVEIKLPALETVRRAALNKI---GRFTKQDIRELCPSLSISSIEG 322
+ ++ A + +I L L + LN G+ T D+ +L + S ++++
Sbjct: 181 RALQQQMKNLAKKVEREKILLSFLPALSVQILNHAREHGQVTIGDMIKLTGT-SRNTLKQ 239
Query: 323 GLRKLVSAGELKREGSGKNICY 344
R+L G L G+G+ Y
Sbjct: 240 HFRQLTQKGHLVMHGNGRGTWY 261
>gi|58698430|ref|ZP_00373340.1| Fic family protein [Wolbachia endosymbiont of Drosophila ananassae]
gi|58535053|gb|EAL59142.1| Fic family protein [Wolbachia endosymbiont of Drosophila ananassae]
Length = 305
Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats.
Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 13/307 (4%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR--DEQEIAGYRDVLNIIHESF 103
L +IA I+S +S IEG + ++QL+ + T R DE+EIAGY V + ++F
Sbjct: 2 LKKIATIESIGSSTRIEGARLSDREVEQLLSKLDTRSFRSLDEREIAGYAYVCEEVFQNF 61
Query: 104 DAIPLSQNYILQLHKIL--YSHMNNPMAGRIKSVQNYISAAY-SDNHTEILFTPLAPFET 160
+ +P ++N I Q H L +S+ + G K N++ A Y S I+F +P ET
Sbjct: 62 NKMPFTENTIKQFHIWLLQFSYKDQRHMGEYKKSPNHVEAFYESGKSLGIVFETASPLET 121
Query: 161 SEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
+ + ++ ++ + + PL+ I +FI FL IHPF DGNGR+SR+LTT LL + G+
Sbjct: 122 ATQMQELIYWTSQQLEVKSLHPLLIIGIFIVTFLAIHPFQDGNGRLSRILTTFLLLKLGY 181
Query: 221 YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFA 280
Y SLE+ NK+ YY AL R Q D P++ + L ++ + +
Sbjct: 182 IYVPYSSLES----NKESYYLALRRTQQSLKTSSNDFNPWLMFFLRSLQKQKFYLEQKVS 237
Query: 281 ---LVEIKLPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREG 337
++ + LP L A L+K GR T +D+ + + + ++++ + LV + + + G
Sbjct: 238 HEKVLNLYLPPLSAKVLALLSKHGRLTIKDLENITKA-NCNTLKKHVSNLVKSNHITQHG 296
Query: 338 SGKNICY 344
GK Y
Sbjct: 297 KGKATWY 303
>gi|75760350|ref|ZP_00740397.1| Fic family protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74492173|gb|EAO55342.1| Fic family protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 350
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 98/355 (27%), Positives = 171/355 (48%), Gaps = 14/355 (3%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPE---ELEKLVEIAKIQSTEA 57
MR F + N ++ + I+ I + G Y Q+PE LEK + + I++
Sbjct: 1 MRNFFEEKYTNLEFKRELINTISKISEYKGAIAAYQTQKPEIFNLLEKSISLQYIKTF-- 58
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLH 117
N E ++ ++K+LV +P+ +E + Y L ++ + +P+ I +LH
Sbjct: 59 PNIYEKFTFSNKQLKKLVDHHASPQTLEEDALFCYCKTLELVQKESHKLPIKPQTIQELH 118
Query: 118 KILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGN 177
L ++ + +G + + +S+ L T + + L +CE+YN +
Sbjct: 119 FQLMNYSTSE-SGNWRKSELVLSSIPKLKDQFKLRTVVLYDMVPQYLYHLCEQYNALRAK 177
Query: 178 MEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKD 237
PL+ IP FI +FLCI+PFN GNG+++++L LL +GF KY ++ + +
Sbjct: 178 GNFHPLLLIPQFILNFLCIYPFNKGNGKLAKILIQWLLIESGFTFVKYTCIDKYFKEYES 237
Query: 238 LYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAAL 297
YYDAL ++ W++G+ +VV ++K L VL AY++ V + T R+
Sbjct: 238 DYYDALYKSAAHWYQGDHNVVFWMKIFLDIVLVAYKE----LNYVIKNCISTHTKRKRIE 293
Query: 298 NKIGR----FTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK 348
I R FTK++IR + P +S S+I L L S G +K G+N + + K
Sbjct: 294 KYIDRQDNPFTKENIRNMYPDISESTINKTLHALNSQGYIKLVSKGRNATWIKRK 348
>gi|126653155|ref|ZP_01725279.1| fic family protein [Bacillus sp. B14905]
gi|126590071|gb|EAZ84197.1| fic family protein [Bacillus sp. B14905]
Length = 358
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 91/348 (26%), Positives = 166/348 (47%), Gaps = 3/348 (0%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
MR F + E ++ + L++ I + GK Y +QR + L IQ + +
Sbjct: 13 MRNF-FQEQYKFNGENQVINLVSEISEYKGKLTAYQEQRSDLFTSLENAMPIQYIKNYVS 71
Query: 61 I-EGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKI 119
I E I ++ R+K+L+ E P++ E I Y + L ++ E + +S + I ++H
Sbjct: 72 IYEDIKVSNKRLKELILEDIIPQSISEDAIFCYSETLTLVREKSNVFDISPDTIQEIHFQ 131
Query: 120 LYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNME 179
L H + + I ++ PL P + A++++C +YN + E
Sbjct: 132 LI-HFLTSDGAKWRQKPFPIPGILEKGMYTKVYRPLPPEKIQMAVEQLCNQYNLLNCKKE 190
Query: 180 VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLY 239
++ I FI + CI PF+ GNGR++ +L LLL ++G KY+ L+ I K + Y
Sbjct: 191 WPTILLIAHFIFNLYCIIPFSQGNGRVTIMLMQLLLIKSGHTFVKYVCLDEHIKKRESEY 250
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNK 299
Y+A+ ++ W+ E ++ ++K L +L AY+ +R + +E ++ L +
Sbjct: 251 YEAIYKSSANWYCNEHNISFWLKIFLTIILDAYKYLHNRVQDSISRQTKIERIQNFVLKQ 310
Query: 300 IGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRL 347
FTK+ IR P ++ S+I L L GE+K G+N C+ ++
Sbjct: 311 EQPFTKEYIRSFYPDIAESTISNALTDLQLVGEIKLITKGRNACWMKV 358
>gi|58697374|ref|ZP_00372703.1| Fic family protein [Wolbachia endosymbiont of Drosophila simulans]
gi|58536229|gb|EAL59779.1| Fic family protein [Wolbachia endosymbiont of Drosophila simulans]
Length = 286
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 89/274 (32%), Positives = 142/274 (51%), Gaps = 12/274 (4%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR--DEQEIAGYRDVLNIIHESF 103
L +IA I+S +S IEG + ++QL+ + T R DE+EIAGY V + ++F
Sbjct: 2 LKKIATIESIGSSTRIEGARLSDREVEQLLSKLDTRSFRSLDEREIAGYAYVCEEVFQNF 61
Query: 104 DAIPLSQNYILQLHKIL--YSHMNNPMAGRIKSVQNYISAAY-SDNHTEILFTPLAPFET 160
+ +P ++N I Q H L +S+ + G K N++ A Y S I+F +P ET
Sbjct: 62 NKMPFTENTIKQFHIWLLQFSYKDQRHMGEYKKSPNHVEAFYESGKSLGIVFETASPLET 121
Query: 161 SEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
+ + ++ ++ + + PL+ I +FI FL IHPF DGNGR+SR+LTT LL + G+
Sbjct: 122 ATQMQELIYWTSQQLEVKSLHPLLIIGIFIVTFLAIHPFQDGNGRLSRILTTFLLLKLGY 181
Query: 221 YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFA 280
Y SLE+ NK+ YY AL R Q D P++ + L ++ + +
Sbjct: 182 IYVPYSSLES----NKESYYLALRRTQQSLKTSSNDFNPWLMFFLRSLQKQKFYLEQKVS 237
Query: 281 ---LVEIKLPALETVRRAALNKIGRFTKQDIREL 311
++ + LP L A L+K GR T +D+ +
Sbjct: 238 HEKVLNLYLPPLSAKVLALLSKHGRLTIKDLENI 271
>gi|75758306|ref|ZP_00738430.1| Fic family protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74494168|gb|EAO57260.1| Fic family protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 351
Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats.
Identities = 93/343 (27%), Positives = 168/343 (48%), Gaps = 6/343 (1%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQ-STEASN 59
MR F N + + LI+ I + GK +Y Q+ L L + +Q +
Sbjct: 1 MRNFFEETYININFKREFIQLISDISEYRGKLSVYQSQKHSTLHHLEKNILLQYMINFTT 60
Query: 60 AIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKI 119
+ I +TR+K+L+ P+ E + Y L+++H++FD + +S I +LH
Sbjct: 61 MYQDIRVPNTRVKELLLNDFPPQTTKEDAVYCYYQTLSLVHQTFDTLSISPETIQELHFQ 120
Query: 120 LYSHMNNPMAGRIKSVQNYISA--AYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGN 177
L H + +G+ + + I AY + + P + +++ ++CE+YN + N
Sbjct: 121 LL-HYSTSDSGKWRQKKFLIPGMPAYEGHISSYRLLPHE--QVPQSVKELCEQYNALRAN 177
Query: 178 MEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKD 237
++ L I FI +F CI PF+ GNGR++ LL LLL +NG+ KYI L+ I KN+
Sbjct: 178 KDMHALPLIARFILNFYCIVPFDQGNGRLAILLLHLLLLQNGYTFIKYICLDKYIKKNES 237
Query: 238 LYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAAL 297
YY+++ ++ W+ E ++ ++K LL ++ Y+D K + ++R L
Sbjct: 238 TYYESIYQSSANWYYSEHNISFWLKSLLTILVEGYQDLNQILLGSIDKQTKAQRIKRYIL 297
Query: 298 NKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
+ FT++DIR + P ++ S+I L +G +K G+
Sbjct: 298 QQTDTFTREDIRGVYPDVAESTISTAFAALQHSGHIKLISKGR 340
>gi|67458877|ref|YP_246501.1| hypothetical protein RF_0485 [Rickettsia felis URRWXCal2]
gi|67004410|gb|AAY61336.1| unknown [Rickettsia felis URRWXCal2]
Length = 273
Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats.
Identities = 79/230 (34%), Positives = 123/230 (53%), Gaps = 5/230 (2%)
Query: 40 PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPK--NRDEQEIAGYRDVLN 97
P+ L++L I ST +SN IEG T +++ L K + K RDEQEI GY L
Sbjct: 44 PQTLDRLTRSVIITSTGSSNRIEGNKLTDEQVENLYKNLSVKKFKTRDEQEIVGYLKCLE 103
Query: 98 IIHESFDAIPLSQNYILQLHK--ILYSHMNNPMAGRIKSVQNYISAA-YSDNHTEILFTP 154
I +++ I +++++IL+LH +++S + G K N + A ++ N +F P
Sbjct: 104 FIFNNYEEISITESFILKLHSDMLVHSEKDARHKGNYKFGSNRVEAKDHNGNVVGTIFDP 163
Query: 155 LAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLL 214
P+ + + ++ + YN + + PLI I FI ++L IHPF D NGR SRLLT LL
Sbjct: 164 TPPYLVKKEMQELIDWYNWTVDSKTKHPLIIIANFIFEYLAIHPFQDRNGRTSRLLTNLL 223
Query: 215 LYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYL 264
L ++G+ + IS E I NK YY AL + Q W ED+ ++ +
Sbjct: 224 LLKHGYLFVQIISHEHIIEANKIDYYMALNKTQATWKTKSEDITAWLIFF 273
>gi|75761078|ref|ZP_00741076.1| Fic family protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
gi|74491439|gb|EAO54657.1| Fic family protein [Bacillus thuringiensis serovar israelensis ATCC
35646]
Length = 347
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 89/351 (25%), Positives = 172/351 (49%), Gaps = 8/351 (2%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPE---ELEKLVEIAKIQSTEA 57
MR F + KN + + LI+ I + GK Y +Q + LEK + + I++
Sbjct: 1 MRDFFDDKYKNIELKRRLINLISEISEFKGKLAAYQEQNKDIFNSLEKTIPLHYIKNF-- 58
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLH 117
+ E I + R+K+L+ + P+N E I Y L+ +H++ + ++ I +LH
Sbjct: 59 TTIYEDIKVPNKRLKELILDDIVPQNISEDAIFCYYQTLSFVHKNSCTLLINPATIQELH 118
Query: 118 KILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFE-TSEALDKICEEYNRVIG 176
L ++ + A + + +I ++ + + P E + ++++C++YN +
Sbjct: 119 FQLIHYITSDSAKWRE--KPFIIPGIPEHGMHLNSYRILPHELIPQFMEQLCDQYNSLNT 176
Query: 177 NMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNK 236
+ + L+ I FI +F CI PFN GN R++ +L LLL ++G KY+ L+ I K++
Sbjct: 177 SKGLHSLLLIARFILNFYCIVPFNQGNNRLAFMLMQLLLIKSGHTFVKYVCLDKYIKKHE 236
Query: 237 DLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAA 296
YY+++ ++ + W+ E + ++K L +L AY+D + K +E ++
Sbjct: 237 SDYYNSIYKSSVNWYCEEHNNSFWLKTFLTIILEAYKDLHNTVLDSICKHTKVERIQDFI 296
Query: 297 LNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRL 347
L + FTK+ IR P ++ S+I L L G +K G+N + ++
Sbjct: 297 LKQKQPFTKESIRNTYPDIAESTISKALNSLQLFGHIKLVTKGRNAKWIKI 347
>gi|89207691|ref|ZP_01186226.1| Filamentation induced by cAMP protein Fic [Bacillus
weihenstephanensis KBAB4]
gi|89154362|gb|EAR74396.1| Filamentation induced by cAMP protein Fic [Bacillus
weihenstephanensis KBAB4]
Length = 347
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 95/353 (26%), Positives = 171/353 (48%), Gaps = 12/353 (3%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPE---ELEKLVEIAKIQSTEA 57
MR F + KN + L +I+ I + GK Y +Q P+ LEK + + I++
Sbjct: 1 MRNFFDDKYKNIELKRRLLNIISEISELKGKLAAYQEQNPDIFTSLEKTIPLHYIKNF-- 58
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLH 117
+ E I + R+K+L+ + PKN E I + L +H++ + ++ I +LH
Sbjct: 59 TTTYEDIKVPNKRLKELILDDIVPKNISEDAIFCFYQTLTFVHKNSCDLLINPETIQELH 118
Query: 118 KILYSHMNNPMAG-RIK--SVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
L ++ + A R K ++ N IL L P + ++++C++YN +
Sbjct: 119 FQLIHYITSDSAKWREKPFTIPGIPENGMHLNSYRILPHELIP----QVMEQLCDQYNSL 174
Query: 175 IGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAK 234
+ L+ I FI +F CI PFN GNGR++ +L LLL ++G KY+ L+ I K
Sbjct: 175 NSSKGHHSLLLIARFIFNFYCIVPFNQGNGRLALMLMQLLLIKSGNTFVKYVCLDKYIKK 234
Query: 235 NKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRR 294
++ YY+++ ++ + W+ E + ++K L +L AY+D + K +E ++
Sbjct: 235 SESEYYNSIYKSSVNWYCEEHNSSFWLKTFLTIILEAYKDLHNTVLDSICKHTKVERIQD 294
Query: 295 AALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRL 347
L + FTK+ IR P ++ S+I L L G +K G+N + ++
Sbjct: 295 FILKQKQPFTKECIRNTYPDIAESTISKALNSLQLFGHIKLVTKGRNASWIKV 347
>gi|153811512|ref|ZP_01964180.1| hypothetical protein RUMOBE_01904 [Ruminococcus obeum ATCC 29174]
gi|153814760|ref|ZP_01967428.1| hypothetical protein RUMTOR_00975 [Ruminococcus torques ATCC 27756]
gi|145847791|gb|EDK24709.1| hypothetical protein RUMTOR_00975 [Ruminococcus torques ATCC 27756]
gi|149832253|gb|EDM87338.1| hypothetical protein RUMOBE_01904 [Ruminococcus obeum ATCC 29174]
Length = 122
Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats.
Identities = 52/117 (44%), Positives = 80/117 (68%)
Query: 1 MRPFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNA 60
MR F++ + + ++++I++ GKQE++L+ +EL+ L+E+A IQST ASN
Sbjct: 6 MRDFDFIVSPAKLLTPEIVQMVSSIHEHKGKQELFLEANVDELKTLLEVALIQSTGASNR 65
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLH 117
IEGI T+ R+++LV +K P+NR EQEIAGYR+VL+ I+E ++ I N ILQLH
Sbjct: 66 IEGIFTSDKRLEELVSQKAEPRNRSEQEIAGYREVLSTIYEGYEYINPRPNIILQLH 122
>gi|147920130|ref|YP_686106.1| predicted cell division protein (Fic family) [uncultured
methanogenic archaeon RC-I]
gi|110621502|emb|CAJ36780.1| predicted cell division protein (Fic family) [uncultured
methanogenic archaeon RC-I]
Length = 366
Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats.
Identities = 64/206 (31%), Positives = 100/206 (48%), Gaps = 12/206 (5%)
Query: 40 PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNII 99
P + V +KI+ T+ S +E ++ IK+ K + + +D E+ YR +
Sbjct: 49 PLTTREAVLSSKIEGTQVS--LEDVLQYEADIKEPFKAE---REQDIHEVLNYRKAMGHA 103
Query: 100 HESFDAIPLSQNYILQLHKILYSHM--NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAP 157
PLS + I LH+IL S + NN G I+ +QNYI S I F P AP
Sbjct: 104 VNELKDHPLSIDMIRDLHRILLSDVRGNNRWPGEIRRIQNYIGRPGSPIEKAI-FVPPAP 162
Query: 158 FETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR 217
+AL + + + + E +PL+ + V F IHPF+DGNGR+ R+L L+LY
Sbjct: 163 SRVMDAL----SNWEQYLHSEEKDPLVQLSVLKAQFELIHPFSDGNGRIGRMLVPLILYN 218
Query: 218 NGFYVGKYISLEAKIAKNKDLYYDAL 243
+ A + +N+D+YY+ L
Sbjct: 219 KKMLSSPMFYISAYLERNRDIYYERL 244
>gi|95928083|ref|ZP_01310833.1| hypothetical protein CburR_01000005 [Coxiella burnetii RSA 331]
Length = 348
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 73/317 (23%), Positives = 146/317 (46%), Gaps = 23/317 (7%)
Query: 41 EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR--DEQEIAGYRDVLNI 98
E LEK+ A + + IEG T ++L + + + D +E+ YR+ +
Sbjct: 34 EWLEKMQNKALVLEAHHTTHIEGTQLTLEESERLWQGQHLAEVNPDDAKELLNYREAFEL 93
Query: 99 IHESF-DAIPLSQNYILQLHKILYSHMNNPMA--GRIKSVQNYISAAYSDNHTEILFTPL 155
+ D P+++ I ++HK L + A G + +QNY+ + + E+++TP
Sbjct: 94 VSNYVGDGEPITEGLIREIHKRLVQGVRGDSATPGLYRKIQNYVVNSKT---KEVIYTPP 150
Query: 156 APFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLL 215
+E S + + + N ++ P++ + + IHPF DGNGR +RLL+TL L
Sbjct: 151 PAYEISHLMQGLVDWLNE---EEDIHPVLVSGIAQFQLVHIHPFLDGNGRTARLLSTLCL 207
Query: 216 YRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDF 275
YR G+ K ++ +N+ YY A+ + E + D+ +++Y + R+
Sbjct: 208 YRKGYDFKKLFTISEYYDRNRADYYKAIQSVR----ENDMDMTGWLEYFSEGLAVQLREI 263
Query: 276 AD------RFALVEIK--LPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKL 327
D + +L+ K L + + + G + Q ++CP ++ +++ L+ L
Sbjct: 264 KDLGKQAIKQSLLSKKHHLSERQGLAIDYMTTEGSLSIQQFEKMCPEVTRRTLQRELKDL 323
Query: 328 VSAGELKREGSGKNICY 344
+ G ++ G+ N+ Y
Sbjct: 324 IDRGLVRSSGATSNLIY 340
>gi|29655356|ref|NP_821048.1| hypothetical protein CBU_2078 [Coxiella burnetii RSA 493]
gi|153206877|ref|ZP_01945695.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|154706085|ref|YP_001425476.1| hypothetical protein COXBU7E912_2174 [Coxiella burnetii Dugway
7E9-12]
gi|29542628|gb|AAO91562.1| conserved hypothetical protein [Coxiella burnetii RSA 493]
gi|154355371|gb|ABS76833.1| conserved hypothetical protein [Coxiella burnetii Dugway 7E9-12]
Length = 348
Score = 89.7 bits (221), Expect = 3e-16, Method: Composition-based stats.
Identities = 73/317 (23%), Positives = 146/317 (46%), Gaps = 23/317 (7%)
Query: 41 EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR--DEQEIAGYRDVLNI 98
E LEK+ A + + IEG T ++L + + + D +E+ YR+ +
Sbjct: 34 EWLEKMQNKALVLEAHHTTHIEGTQLTLEESERLWQGQHLAEVNPDDAKELLNYREAFEL 93
Query: 99 IHESF-DAIPLSQNYILQLHKILYSHMNNPMA--GRIKSVQNYISAAYSDNHTEILFTPL 155
+ D P+++ I ++HK L + A G + +QNY+ + + E+++TP
Sbjct: 94 VSNYVGDGEPITEGLIREIHKRLVQGVRGDSATPGLYRKIQNYVVNSKT---KEVIYTPP 150
Query: 156 APFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLL 215
+E S + + + N ++ P++ + + IHPF DGNGR +RLL+TL L
Sbjct: 151 PAYEISHLMQGLVDWLNE---EEDIHPVLVSGIAQFQLVHIHPFLDGNGRTARLLSTLCL 207
Query: 216 YRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDF 275
YR G+ K ++ +N+ YY A+ + E + D+ +++Y + R+
Sbjct: 208 YRKGYDFKKLFTISEYYDRNRADYYKAIQSVR----ENDMDMTGWLEYFSEGLAVQLREI 263
Query: 276 AD------RFALVEIK--LPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKL 327
D + +L+ K L + + + G + Q ++CP ++ +++ L+ L
Sbjct: 264 KDLGKQAIKQSLLSKKHHLSERQGLAIDYMTTEGSLSIQQFEKMCPEVTRRTLQRELKDL 323
Query: 328 VSAGELKREGSGKNICY 344
+ G ++ G+ N+ Y
Sbjct: 324 IDRGLVRSSGATSNLIY 340
>gi|78189956|ref|YP_380294.1| fic family protein [Chlorobium chlorochromatii CaD3]
gi|78172155|gb|ABB29251.1| fic family protein [Chlorobium chlorochromatii CaD3]
Length = 377
Score = 84.7 bits (208), Expect = 8e-15, Method: Composition-based stats.
Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 23/267 (8%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQ--LVKEKTTPKNRDE-QEIAGYRDVLNII 99
++ +++ ++ + S+ IEG T T I + L +E+ +P+ RD+ +E+ Y D +N
Sbjct: 60 IDLFIQMHVVKEAQTSSKIEG---TQTGIDEALLSEEQISPEKRDDWREVRNYIDAVNSA 116
Query: 100 HESFDAIPLSQNYILQLHKILYSHM--NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAP 157
+ +PLS + Q HKIL S + + + G + QN+I + N T+ F P P
Sbjct: 117 ITTLHDLPLSNRLLKQTHKILLSGVRGEHKLPGEFRVSQNWIGGS---NLTDASFIPPHP 173
Query: 158 FETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR 217
+E + + + ++ ++ V LI I + + F IHPF DGNGR+ RLL L L
Sbjct: 174 ESVAELMSDLEKFWHN--QDIAVPHLIRIALSHYQFETIHPFLDGNGRIGRLLIPLYLVS 231
Query: 218 NGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFAD 277
+G + L +++ YYDAL + +++ ++K+ L V D
Sbjct: 232 HGVLAKPSLYLSDFFERHRSSYYDALMHVRT-----SNNLIHWLKFFLNGVAQTATKGRD 286
Query: 278 RFALV-----EIKLPALETVRRAALNK 299
F + E++ L +RA L +
Sbjct: 287 IFQQILTLREEVEQAVLSLGKRATLAR 313
>gi|91205275|ref|YP_537630.1| Fic family protein [Rickettsia bellii RML369-C]
gi|109728841|ref|ZP_01380252.1| hypothetical protein RbelO_01001050 [Rickettsia bellii OSU 85-389]
gi|91068819|gb|ABE04541.1| Fic family protein [Rickettsia bellii RML369-C]
Length = 407
Score = 82.4 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 87/316 (27%), Positives = 138/316 (43%), Gaps = 56/316 (17%)
Query: 28 EAGKQE-MYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVK--EKTTPKNR 84
EA K E ++L P L L E A++ +T S IEG + +IK +V+ E + R
Sbjct: 25 EAIKAEILHLPLNPTVLSSLRETARLYTTHYSTMIEGNRLDADQIKNIVQHQEHFPGRER 84
Query: 85 DEQEIAGYRDVLNIIHESF-DAIPLSQNYILQLHKILYSH-------------------- 123
DE E+ GY L + + + +++N I LH ++ S+
Sbjct: 85 DEDEVKGYYAALTQVEKWVAQNVKITENIIQTLHALIMSNGKTNVKPTKCTADTSKVGSQ 144
Query: 124 MNNPMAGRIKSVQNY-----------ISAAYSDNHT--------EILFTPLAPFETSEAL 164
++ A RIK + + +S Y D +I++ P EA
Sbjct: 145 ISGEPAERIKIREQWRVPKFDLPNLEVSKVYRDGQNVIKDSGTKKIIYMP------PEAK 198
Query: 165 DKICEEYNRV--IGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLLLYRNGFY 221
D +N V I N E+ P I H F IHP+ DGNGR +RLLTTL+L+ G+
Sbjct: 199 DVKNLMHNMVLWINNNEL-PFPVIAAIAHYQFATIHPYYDGNGRTARLLTTLILHLGGYD 257
Query: 222 VGKYISLEAKIAKNKDLYYDALGRAQIGWHEG--EEDVVPFIKYLLGTVLAAYRDFADRF 279
+ SLE AKN YY+A+ ++ G E D+ +++Y + + ++ ++
Sbjct: 258 LKGLYSLEEYYAKNLGAYYEAISIGHHNYYMGRAEADITGWVEYFINGMAISFEKVLNQM 317
Query: 280 ALVEIK-LPALETVRR 294
V K LP + V R
Sbjct: 318 QEVSNKELPDMSAVLR 333
>gi|21228708|ref|NP_634630.1| hypothetical protein MM_2606 [Methanosarcina mazei Go1]
gi|20907215|gb|AAM32302.1| hypothetical protein MM_2606 [Methanosarcina mazei Go1]
Length = 359
Score = 79.3 bits (194), Expect = 3e-13, Method: Composition-based stats.
Identities = 75/313 (23%), Positives = 140/313 (44%), Gaps = 26/313 (8%)
Query: 50 AKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPK-NRDEQEIAGYRDVLNIIHESFDAIPL 108
A I+ T + +IEG T + L++ K P +D+ E+ Y DVL I ++ +
Sbjct: 56 ALIKQTHHTTSIEGNQLTLEEVSLLIEGKDIPAGEKDKNEVKNYVDVLEYIDSLEESTSI 115
Query: 109 SQNYILQLHKILYSH-MNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKI 167
++ L++H++ + AG + V+ + + +I + P P E +
Sbjct: 116 TEKIFLEIHRLTVKDILPAASAGNYRKVRVVVGNPKTG---KITYVPPEPEEVPLLTRSL 172
Query: 168 CEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYIS 227
E N +++ P I + ++ IHPF DGNGR +R L+TL+L + GF K+ +
Sbjct: 173 LEWLNSAEA-LDLMPAIQAGIAHYEIARIHPFLDGNGRTARALSTLILTKRGFDTKKFFA 231
Query: 228 LEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV-------------LAAYRD 274
LE +++ YY AL A E + +++Y L + L++ R
Sbjct: 232 LEEYYNEDRQAYYSALADADAKGGE----LTGWLEYFLFGIAVETSRVENTVKKLSSDRS 287
Query: 275 FADRFALVEIKLPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELK 334
++F + + ++ V L + GR T ++ +ELC +S + L+ +V L+
Sbjct: 288 MKEKFGQIGLSNRQIKAV--GYLKEKGRITNKEYQELC-DVSQPTANRDLQDMVDKNVLQ 344
Query: 335 REGSGKNICYYRL 347
++G Y L
Sbjct: 345 QKGKKSQQIIYVL 357
>gi|126179417|ref|YP_001047382.1| filamentation induced by cAMP protein Fic [Methanoculleus
marisnigri JR1]
gi|125862211|gb|ABN57400.1| filamentation induced by cAMP protein Fic [Methanoculleus
marisnigri JR1]
Length = 369
Score = 78.6 bits (192), Expect = 6e-13, Method: Composition-based stats.
Identities = 58/201 (28%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 53 QSTEASNAIEGIVTTSTRIKQLVKEKTTPKN-------RDEQEIAGYRDVLNIIHESFDA 105
Q S+ IEG T ++ +++ + PK D +EI YR+ LN ++ A
Sbjct: 55 QEAVLSSRIEG---TQASLEDVLRFEANPKEPVGDASLADIREIINYREALNAAVDALKA 111
Query: 106 IPLSQNYILQLHKILY--SHMNNPMAGRIKSVQNYISAAYSDNHTE-ILFTPLAPFETSE 162
L + LH++L S + G I+++QN+I D H E +F P AP +
Sbjct: 112 GRLDTGLVCDLHRVLLAGSRGMDREPGCIRTIQNFIG---RDAHIEHAIFVPPAPADLPG 168
Query: 163 ALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV 222
AL ++ + E + L+ + V F IHPF DGNGR+ R+L L++Y G
Sbjct: 169 AL----ADWEAYLHREEKDVLVQLSVLKAQFELIHPFCDGNGRVGRMLVPLIMYEKGLIG 224
Query: 223 GKYISLEAKIAKNKDLYYDAL 243
+ A + +N+ +YY+ L
Sbjct: 225 SPMFYISAYLERNRPVYYERL 245
>gi|153827374|ref|ZP_01980041.1| Fic family protein [Vibrio cholerae MZO-2]
gi|149738704|gb|EDM53046.1| Fic family protein [Vibrio cholerae MZO-2]
Length = 330
Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 74/259 (28%), Positives = 125/259 (48%), Gaps = 26/259 (10%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
L L+A I + G+ + P EL KL ++ ++++ + S AIEG T +I L+ K
Sbjct: 17 LSLVAQISECLGRLSVNCAS-PREL-KLRKVNRVRTIQGSLAIEGNELTQEQITALLNGK 74
Query: 79 T--TPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQ 136
PK + ++ + + +N+ E + +LQ H++L + + M GR +
Sbjct: 75 RILAPKKQVQEAL----NAINVYQELNSWSSHREVDLLQAHEVLMIGLQS-MIGRYRMDG 129
Query: 137 NYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCI 196
+ D + P +E + K+ E + N PLI VF ++F I
Sbjct: 130 ---VGVFKDGQVLHMAPP------AERVPKLMSELFHWLANDNSHPLIRSCVFHYEFEFI 180
Query: 197 HPFNDGNGRMSRLLTTLLLYR-NGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEE 255
HPF+DGNGRM RL TL+L N + ++ +E+ I N+ YYDA+ R+ + +
Sbjct: 181 HPFSDGNGRMGRLWQTLILSEWNPLFA--HLPVESFIYDNQQAYYDAINRSTL-----KA 233
Query: 256 DVVPFIKYLLGTVLAAYRD 274
D PFI ++L VL A ++
Sbjct: 234 DSEPFISFMLQMVLNALQE 252
>gi|42525751|ref|NP_970849.1| fic family protein [Treponema denticola ATCC 35405]
gi|41815762|gb|AAS10730.1| fic family protein [Treponema denticola ATCC 35405]
Length = 377
Score = 78.2 bits (191), Expect = 7e-13, Method: Composition-based stats.
Identities = 70/216 (32%), Positives = 99/216 (45%), Gaps = 18/216 (8%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTT--PKNR-DEQEIAGYRDVLNIIHESFDAIPLSQNYIL 114
SN IEG T T I++ + E+ P+ R D QE+ Y +N + + +PLS I
Sbjct: 75 SNRIEG---TRTNIEEALNEQDNLDPEKRNDWQEVHNYVKAMNNAIQELENLPLSNRLIK 131
Query: 115 QLHKILYS--HMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYN 172
HKIL S + G + QN+I ++ +F P A E E L + N
Sbjct: 132 NTHKILLSTGRGEHKSPGEFRISQNWIGGT---TLSDAVFIPPAHEELPELLSDLELFLN 188
Query: 173 RVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKI 232
N+ + LI I + + F IHPF DGNGR+ RLL +L L + + L
Sbjct: 189 NT--NINIPHLIRIAIAHYQFETIHPFLDGNGRIGRLLISLYLVHSKVLQKPLLYLSDFF 246
Query: 233 AKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
KNK LYYD L + + D+ +IKY L V
Sbjct: 247 EKNKTLYYDNLTFVRT-----KNDMSQWIKYFLEGV 277
>gi|46447446|ref|YP_008811.1| hypothetical protein pc1812 [Candidatus Protochlamydia amoebophila
UWE25]
gi|46401087|emb|CAF24536.1| hypothetical protein [Candidatus Protochlamydia amoebophila UWE25]
Length = 363
Score = 77.8 bits (190), Expect = 9e-13, Method: Composition-based stats.
Identities = 67/259 (25%), Positives = 123/259 (47%), Gaps = 14/259 (5%)
Query: 28 EAGKQE-MYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKT--TPKNR 84
EA KQ+ ++L P L L E ++ +T S IEG ++++++K + + R
Sbjct: 23 EAAKQKILHLPLMPTVLSSLRETTRLYTTHYSTMIEGNRLDPDQVEEVLKHQGHFPGRER 82
Query: 85 DEQEIAGYRDVLNIIHE-SFDAIPLSQNYILQLHKILYSH-MNNPMAGRIKSVQNYISAA 142
DE E+ GY L + + + + +++ I LH ++ ++ N + QN I
Sbjct: 83 DEHEVKGYYAALTQLEKWAAQGVSIAEKMIQILHALVMANGKGNAKPTAYRDGQNVIR-- 140
Query: 143 YSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDG 202
D T+ + P E + + N + N ++ I + + F IHP+ DG
Sbjct: 141 --DGRTKAIV--YMPPEAKDVKSLMTGMVNWINKNTDLPCPIIAGIAHYQFATIHPYYDG 196
Query: 203 NGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQI-GWHEG--EEDVVP 259
NGR +RLLTTL+L+ G+ + SLE A+N YY+A+ + ++ G E D+
Sbjct: 197 NGRTARLLTTLILHLGGYDLKGLYSLEEYYARNLGAYYEAISIGESHNYYMGRAEADITK 256
Query: 260 FIKYLLGTVLAAYRDFADR 278
+++Y + + A+ + R
Sbjct: 257 WVEYFVEGMAVAFENVLKR 275
>gi|147678789|ref|YP_001213004.1| hypothetical protein PTH_2455 [Pelotomaculum thermopropionicum SI]
gi|146274886|dbj|BAF60635.1| uncharacterized conserved protein [Pelotomaculum thermopropionicum
SI]
Length = 381
Score = 77.0 bits (188), Expect = 2e-12, Method: Composition-based stats.
Identities = 74/258 (28%), Positives = 122/258 (47%), Gaps = 25/258 (9%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVK-EKTTPKNR--DEQEIAGYRDVLNIIHE 101
KL E A+++++ S IEG T + ++K EK + + R D E+ Y + L + E
Sbjct: 53 KLREKARVRASHYSTYIEGNRLTFEEAESVIKDEKASVQGREHDAGEVRNYWNALLRVEE 112
Query: 102 -SFDAIPLSQNYILQLHK-ILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFE 159
+ PL+++ I +LH ++ P R QN I A + I++ P
Sbjct: 113 WAAQKAPLTEDLIRKLHAAVMKGRRAKPTPYR--DGQNVIRDASTG---AIVYMP----- 162
Query: 160 TSEALDKICEEYNRVIGNMEVE----PLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLL 214
EA D V N + E P+ I +H F+ IHPF DGNGR +RLL T +
Sbjct: 163 -PEAKDVPALMGEMVAWNSQAERENLPVPLIAALVHYQFVTIHPFYDGNGRTARLLATFV 221
Query: 215 LYRNGFYVGKYISLEAKIAKNKDLYYDALG-RAQIGWHEG--EEDVVPFIKYLLGTVLAA 271
L++ G+ + + SLE + A++ YY A+ ++ G E D+ P+++Y L
Sbjct: 222 LHKGGYGLNGFFSLEEQHARDLKAYYQAIAVHPHHNYYMGRAEADLTPWLEYFLALTARV 281
Query: 272 YRDFADR-FALVEIKLPA 288
+ + D L E ++PA
Sbjct: 282 FIEAKDEALKLAEKRVPA 299
>gi|42521107|ref|NP_967022.1| Fic family protein [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42410848|gb|AAS14956.1| Fic family protein [Wolbachia endosymbiont of Drosophila
melanogaster]
Length = 359
Score = 76.6 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 38/287 (13%)
Query: 28 EAGKQE-MYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTT-PK-NR 84
EA K++ ++L L L E A++ +T S IEG +I++++ K+ PK R
Sbjct: 20 EAAKEKVLHLPLTVSMLLSLRETARLYTTHYSTMIEGNRLEPKQIEEVLSGKSHFPKYRR 79
Query: 85 DEQEIAGYRDVLNIIHE-SFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSV-----QNY 138
DE E+ GY L + + + IP+++ + LH ++ + + +IKS QN
Sbjct: 80 DENEVKGYYAALTQVEQWAARRIPITEKAVQTLHALVIASGKS----KIKSTPYRDGQNV 135
Query: 139 ISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIH 197
I + + I++ P ++ + K+ I N E P I H F+ IH
Sbjct: 136 IRDSLT---RAIIYMP----PEAKDVPKLMSSMIDWIRNSEQVPCPIIAGIAHYQFVTIH 188
Query: 198 PFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDA----------LGRAQ 247
P+ DGNGR +RLLTTL+L+ G+ + SLE AKN YY+A +GRA
Sbjct: 189 PYYDGNGRTARLLTTLILHLGGYDLKGLYSLEEYYAKNLGAYYEAISVGPSHNYYMGRA- 247
Query: 248 IGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRR 294
E D+ +++Y + + ++ + R E + +R+
Sbjct: 248 ------EADITKWVEYFVEGMANSFENVLQRINEEEYHTDQTDLIRK 288
>gi|147673973|ref|YP_001218547.1| Fic family protein [Vibrio cholerae O395]
gi|146315856|gb|ABQ20395.1| Fic family protein [Vibrio cholerae O395]
Length = 330
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 71/260 (27%), Positives = 127/260 (48%), Gaps = 28/260 (10%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
L L+A I + G+ + P EL KL ++ ++++ + S AIEG + +I L+ K
Sbjct: 17 LSLVAQISECLGRLSVNCAS-PREL-KLRKVNRVRTIQGSLAIEGNELSQEQITALLNGK 74
Query: 79 TT--PKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAG-RIKSV 135
PK + ++ + + +N+ E + +LQ H++L + + + R+ V
Sbjct: 75 RVLAPKKQVQEAL----NAINVYQELNSWSSHREVDLLQAHEVLMIGLQSVIGRYRMDGV 130
Query: 136 QNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLC 195
+ D + P +E + K+ E + + N PLI VF ++F
Sbjct: 131 -----GVFKDGQVLHMAPP------AERVPKLMSELFQWLANDNSHPLIRSCVFHYEFEF 179
Query: 196 IHPFNDGNGRMSRLLTTLLLYR-NGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGE 254
IHPF+DGNGRM RL TL+L N + ++ +E+ I +N+ YYDA+ R+ + +
Sbjct: 180 IHPFSDGNGRMGRLWQTLILSEWNPLFA--HLPVESFIYENQQAYYDAINRSTL-----K 232
Query: 255 EDVVPFIKYLLGTVLAAYRD 274
D PFI ++L +L A ++
Sbjct: 233 ADSEPFIAFMLQMILNALQE 252
>gi|134298802|ref|YP_001112298.1| filamentation induced by cAMP protein Fic [Desulfotomaculum
reducens MI-1]
gi|134051502|gb|ABO49473.1| filamentation induced by cAMP protein Fic [Desulfotomaculum
reducens MI-1]
Length = 368
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 64/245 (26%), Positives = 121/245 (49%), Gaps = 18/245 (7%)
Query: 44 EKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV-KEKTTPKNRDEQEIAGYRDVLNIIHES 102
EKL + AKI+ST S IEG T ++++++ + ++ QE+ Y L+ ++++
Sbjct: 38 EKLKQRAKIKSTHYSTYIEGNPLTMHQVEEIIGRRPDKSESYHTQEVRNYWRALSFLNKA 97
Query: 103 -FDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAA-------YSDNHTEILFTP 154
+P+++ +I +LH+I+ + P GR + Y A D+ T +
Sbjct: 98 KLKRLPITEEFIKKLHRII--EVRGP--GRRGKMSEYRGATPPGVLFCVRDSDTGAVEYI 153
Query: 155 LAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLL 214
+E L K ++ R + V AI + F+ IHPF+DGNGR++R L +
Sbjct: 154 PPYWEEVPGLMKDLVDWIRKEKTLPVPIKAAISAY--QFVTIHPFDDGNGRLARALALYI 211
Query: 215 LYRNGFYVGKYISLEAKIAKNKDLYYDALGRA-QIGWHEGE--EDVVPFIKYLLGTVLAA 271
L N + + Y ++E AK+ YY++L + ++EG ++ P++ + L T+ +
Sbjct: 212 LMINEYDLNGYFTVEENYAKDLQTYYNSLQMGLPVSYYEGRNNSNLTPWVTFFLSTMADS 271
Query: 272 YRDFA 276
+ D A
Sbjct: 272 FEDIA 276
>gi|148927904|ref|ZP_01811313.1| filamentation induced by cAMP protein Fic [candidate division TM7
genomosp. GTL1]
gi|147886738|gb|EDK72299.1| filamentation induced by cAMP protein Fic [candidate division TM7
genomosp. GTL1]
Length = 383
Score = 76.3 bits (186), Expect = 3e-12, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 19/223 (8%)
Query: 53 QSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR---DEQEIAGYRDVLNIIHESFDAIPLS 109
+ +S+ IEG T +T + + +E P D +I Y D LN + + P++
Sbjct: 70 KDASSSSQIEG--TNATMMDAIERENVEPSTNLPADVDDILHYIDALNYGLKRAEDFPIT 127
Query: 110 QNYILQLHKILYSH--MNNPM-AGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDK 166
+I +LH+ L ++ + +P G ++ QN+IS DN + P E +L +
Sbjct: 128 LRFIRELHEQLMTNARITHPAYPGEFRTKQNWISGTRPDNAK---YVPPPVHEMKTSLGQ 184
Query: 167 ICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYI 226
+ E++ + + PLI + F IHPFNDGNGR R+L T+ L+ G +
Sbjct: 185 L-EKF--IHAEDDYLPLIKAGMLHAQFETIHPFNDGNGRTGRMLITMFLWHKGLLEMPIL 241
Query: 227 SLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVL 269
L + ++++LYY+ L G+H+ E V ++ + L V+
Sbjct: 242 YLSSYFKQHQELYYEKLN----GYHDNGE-VSKWLDFFLDGVI 279
>gi|99034487|ref|ZP_01314476.1| hypothetical protein Wendoof_01000719 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 359
Score = 75.9 bits (185), Expect = 3e-12, Method: Composition-based stats.
Identities = 76/271 (28%), Positives = 128/271 (47%), Gaps = 38/271 (14%)
Query: 28 EAGKQE-MYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTT-PK-NR 84
EA K++ ++L L L E A++ +T S IEG +I++++ K+ PK R
Sbjct: 20 EAAKEKVLHLPLTVSMLLSLRETARLYTTHYSTMIEGNRLEPKQIEEVLSGKSHFPKYRR 79
Query: 85 DEQEIAGYRDVLNIIHE-SFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSV-----QNY 138
DE E+ GY L + + + IP+++ + LH ++ + + +IKS QN
Sbjct: 80 DENEVKGYYAALTQVEQWAARRIPITEKAVQTLHALVIASGKS----KIKSTPYRDGQNV 135
Query: 139 ISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIH 197
I + + I++ P ++ + K+ I N E P I H F+ IH
Sbjct: 136 IRDSLT---RAIIYMP----PEAKDVPKLMSSMIDWIRNSEQVPCPIIAGIAHYQFVTIH 188
Query: 198 PFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDA----------LGRAQ 247
P+ DGNGR +RLLTTL+L+ G+ + SLE AKN YY+A +GRA
Sbjct: 189 PYYDGNGRTARLLTTLILHLGGYDLKGLYSLEEYYAKNLGAYYEAISVGPSHNYYMGRA- 247
Query: 248 IGWHEGEEDVVPFIKYLLGTVLAAYRDFADR 278
E D+ +++Y + + ++ + R
Sbjct: 248 ------EADITKWVEYFVEGMANSFENVLQR 272
>gi|89890778|ref|ZP_01202287.1| putative cell filamentation protein Fic [Flavobacteria bacterium
BBFL7]
gi|89516923|gb|EAS19581.1| putative cell filamentation protein Fic [Flavobacteria bacterium
BBFL7]
Length = 317
Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 92/343 (26%), Positives = 155/343 (45%), Gaps = 44/343 (12%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV 75
S L LI +I ++ G+ +L +P +L + +I++ +S IEG T +I LV
Sbjct: 9 SSILTLITSISEKIGEVNAHLLNKPSP--QLRKQNRIKTIHSSLQIEGNTLTEEQITALV 66
Query: 76 KEKTTPKNRDEQEIAGYRDVLNI-----IHESFDAI-PLSQNYILQLHK-ILYSHMNNPM 128
K I +DVL + I+E+ + P + L+ H+ ++ + N
Sbjct: 67 DNKRV--------IGPQKDVLEVLNAIKIYENIEEYKPTDEKSFLKTHQHLMQGLIENSG 118
Query: 129 AGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPV 188
RI+SV D+ E L PF+ L K EY + +E LI V
Sbjct: 119 KYRIQSV-----GIVKDSKVEHL---APPFKNVPYLMKDLFEYLKKSDEIE---LIKSCV 167
Query: 189 FIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQI 248
F ++ IHPF DGNGR+ RL TL+L + + +++ E I+++++ YY AL +
Sbjct: 168 FHYEMEFIHPFMDGNGRIGRLWQTLILMEK-YPIFEFLPFETLISRDQEKYYQALAES-- 224
Query: 249 GWHEGEEDVVPFIKYLLGTV---LAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTK 305
+ FI+Y+L + L+ DF +R + +L ++ KI FT+
Sbjct: 225 ---DKSGKSTKFIEYMLEVIDNSLSELLDFNNRTLTEKDRLSYFVSL------KIHEFTR 275
Query: 306 QDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK 348
+D + +S ++ L+K G ++ G KN YRLK
Sbjct: 276 KDYMNVFKDISTATASRDLKKGAELGFFEKTGE-KNKTRYRLK 317
>gi|124009630|ref|ZP_01694303.1| filamentation induced by cAMP protein Fic [Microscilla marina ATCC
23134]
gi|123984771|gb|EAY24751.1| filamentation induced by cAMP protein Fic [Microscilla marina ATCC
23134]
Length = 462
Score = 75.9 bits (185), Expect = 4e-12, Method: Composition-based stats.
Identities = 65/236 (27%), Positives = 110/236 (46%), Gaps = 30/236 (12%)
Query: 36 LKQRPEELE-KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR---DEQEIAG 91
L+ EE E ++ + ++ SNAIEG T + L+ T K + D +I G
Sbjct: 26 LRPLSEEQEGRIFQKLRLDWNYHSNAIEGNSLTYGETRALLMYGLTAKGKPFKDHLDIKG 85
Query: 92 YRDVLNIIHESF-DAIPLSQNYILQLHKILYSHMNNPMA--------------GRIKSVQ 136
+ + ++ + D PLS+ I ++HK++ + A G+ K+
Sbjct: 86 HNEAIDFLLALIKDPRPLSEQDIREMHKLVLQESYSTKAQTQEGKEVSKVITLGQYKTSA 145
Query: 137 NYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCI 196
N++ A + H P ET ++ + Y + + EV P++ +F + F+ I
Sbjct: 146 NHVKTATGEIHYYA-----TPEETPAKMNDLMAWYAKASQSNEVHPVVLAALFHYRFVAI 200
Query: 197 HPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKN-KDLYYDALGRAQIGWH 251
HPF+DGNGRM+RLL L+L R+ Y + K N ++ YY+AL +A G H
Sbjct: 201 HPFDDGNGRMARLLMNLVLMRH-----SYPPVVIKQDNNSRNQYYNALAQADAGEH 251
>gi|91217321|ref|ZP_01254281.1| hypothetical protein P700755_14250 [Psychroflexus torquis ATCC
700755]
gi|91184429|gb|EAS70812.1| hypothetical protein P700755_14250 [Psychroflexus torquis ATCC
700755]
Length = 344
Score = 74.7 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 16/254 (6%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
+ L++ ++ G+ +MY + +L + IAK ++T++S IEG T+ L +E+
Sbjct: 4 ISLLSKADRQLGRLDMYSEYVNIDLFIRMHIAK-EATQSSK-IEG-TQTNMEDAFLSREE 60
Query: 79 TTPKNRDE-QEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMN--NPMAGRIKSV 135
+ RD+ +E+ Y +N + P S I Q HKIL + N + G +
Sbjct: 61 VSLDKRDDWEEVQNYIQAMNEAVKLLYTSPFSSRLIKQTHKILLQGVRGANKLPGEFRIS 120
Query: 136 QNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLC 195
QN+I A + + +F P E + + N + ++ L+ I + + F
Sbjct: 121 QNWIGGA---SINDAMFIPPVHTSIGEIMSDLEHFANNELNHLP--DLLKIAIIHYQFET 175
Query: 196 IHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEE 255
IHPF DGNGR+ RLL TL L G + L +N+ LYYD L R +
Sbjct: 176 IHPFLDGNGRVGRLLITLYLVNKGILKQPILYLSDFFERNRLLYYDNLMRVR-----SNN 230
Query: 256 DVVPFIKYLLGTVL 269
D+ ++K+ L ++
Sbjct: 231 DINQWLKFFLTGII 244
>gi|124485731|ref|YP_001030347.1| hypothetical protein Mlab_0909 [Methanocorpusculum labreanum Z]
gi|124363272|gb|ABN07080.1| filamentation induced by cAMP protein Fic [Methanocorpusculum
labreanum Z]
Length = 328
Score = 74.7 bits (182), Expect = 9e-12, Method: Composition-based stats.
Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 46/327 (14%)
Query: 40 PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQEIAGYRDVL 96
PE L L E +I T SNAIEG T + K L+++ T RD E G+
Sbjct: 23 PETLSSLKEYFRIGLTYTSNAIEGNSLTESETKVLIEDGLTVSGKPLRDIYETLGHAKAY 82
Query: 97 NIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPL- 155
I++ A +++++I LH++ Y ++ AG ++ + ++ ++ PL
Sbjct: 83 GYIYDILSAQTITEDHIKTLHRLFYDQIDKGNAGIYRTERVVVTGSH---------YPLP 133
Query: 156 APFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLL 215
P + + + K + +N +P+ + F+ IHPF DGNGR++RL+ L+L
Sbjct: 134 KPDQIPDKMKKYIDWFN--AHEKTTDPVKFAALSHQKFVFIHPFIDGNGRVARLIMNLVL 191
Query: 216 YRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDF 275
R G+ I + I +++ Y ++L A +D PFI+++ ++ +D
Sbjct: 192 LRAGY----QICIIPPILRHE--YVESLELAH-------KDTKPFIEFIAERIVETEKDI 238
Query: 276 ADRFALVEIKLPALETVRRAALNKIGR-----------------FTKQDIRELCPSLSIS 318
F + + A K+ +D+ EL S S
Sbjct: 239 LRLFGESTSMHEGAKQINEGANPKVSLENEGVNAVLKLITWQPGLNTRDLSELTGK-SRS 297
Query: 319 SIEGGLRKLVSAGELKREGSGKNICYY 345
S+E +R L + G ++ G+ KN YY
Sbjct: 298 SVERYIRVLKTNGMIEFRGAAKNGGYY 324
>gi|144900421|emb|CAM77285.1| Filamentation induced by cAMP protein Fic [Magnetospirillum
gryphiswaldense MSR-1]
Length = 367
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 14/200 (7%)
Query: 82 KNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHM--NNPMAGRIKSVQNYI 139
K +D QEI YR L + E+ P++ + + Q+H +L + +N G + QN+I
Sbjct: 84 KVQDIQEIVNYRKALVLATEALAERPITLSLVRQMHAVLMDSVRGSNKSPGDFRVDQNWI 143
Query: 140 SAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPF 199
+ F P +P + + L + + + E + L+ + + F IHPF
Sbjct: 144 GPT-GCTMAQATFVPPSPLQLQDHL----QAWEAYLSADEFDSLVQVAIMHAQFELIHPF 198
Query: 200 NDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL-GRAQIGWHEGEEDVV 258
DGNGR+ RLL L L++ L + ++DLYY L G +Q G D
Sbjct: 199 KDGNGRIGRLLIPLFLFQRRTLASPMFYLSEYLESHRDLYYARLRGISQDG------DWS 252
Query: 259 PFIKYLLGTVLAAYRDFADR 278
+I++ L ++ R DR
Sbjct: 253 SWIEFFLEAIVEQARSNTDR 272
>gi|58698267|ref|ZP_00373186.1| Fic family protein [Wolbachia endosymbiont of Drosophila ananassae]
gi|58535239|gb|EAL59319.1| Fic family protein [Wolbachia endosymbiont of Drosophila ananassae]
Length = 357
Score = 74.3 bits (181), Expect = 1e-11, Method: Composition-based stats.
Identities = 77/287 (26%), Positives = 132/287 (45%), Gaps = 38/287 (13%)
Query: 28 EAGKQE-MYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTT-PK-NR 84
EA K++ ++L L L E A++ +T S IEG +I++++ K+ PK R
Sbjct: 18 EAAKEKVLHLPLTVSMLSSLRETARLYTTHYSTMIEGNRLEPKQIEEVLSGKSHFPKYRR 77
Query: 85 DEQEIAGYRDVLNIIHE-SFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSV-----QNY 138
DE E+ GY L + + + +P+++ I LH ++ + + +IKS QN
Sbjct: 78 DENEVKGYYAALTQVEQWAAREVPITEKAIQTLHALVMASGKS----KIKSTPYRDGQNV 133
Query: 139 ISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIH 197
I + + I++ P ++ + K+ I N E P I H F+ IH
Sbjct: 134 IRDSLT---RAIIYMP----PEAKDVPKLMSSMIDWIRNSEQVPCPIIAGIAHYQFVTIH 186
Query: 198 PFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDA----------LGRAQ 247
+ DGNGR +RLLTTL+L+ G+ + SLE AKN YY+A +GRA
Sbjct: 187 HYYDGNGRTARLLTTLILHLGGYDLKGLYSLEEYYAKNLGAYYEAISIGPSHNYYMGRA- 245
Query: 248 IGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRR 294
E D+ +++Y + + ++ + R E + +R+
Sbjct: 246 ------EADITKWVEYFVEGMANSFENVLQRINKEEYHADQTDLIRK 286
>gi|150403375|ref|YP_001330669.1| filamentation induced by cAMP protein Fic [Methanococcus
maripaludis C7]
gi|150034405|gb|ABR66518.1| filamentation induced by cAMP protein Fic [Methanococcus
maripaludis C7]
Length = 429
Score = 73.9 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 86/335 (25%), Positives = 162/335 (48%), Gaps = 26/335 (7%)
Query: 29 AGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQE 88
+G L+ P E E+ + + ++ AS+ IEG VTT K+++K+ PKN+D++
Sbjct: 97 SGNLSTALESIPSEKERYIIDSLMEEAIASSQIEGAVTTRKVAKEMLKKGQKPKNKDQKM 156
Query: 89 IAGYRDVLNIIHESFDAIPLSQNYILQLHKILYS-HMNNP-MAGRIKSVQNYISAAYSDN 146
I + + I E + S + IL++HKI+ + +P G+ + +N A YS +
Sbjct: 157 ILNNYNTMKYILEIKNK-EFSISEILKIHKIITDGTLEDPEFVGKFR--KNNEIAVYSTD 213
Query: 147 HTEILFTPLAPFETSEAL-DKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGR 205
T +L P +E E+L + +CE N + I F+ + IHPFNDGNGR
Sbjct: 214 GT-LLHEP-PKYELVESLMNNLCEFSNSKDKFIHPIIKGIIIHFLIGY--IHPFNDGNGR 269
Query: 206 MSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIG--WHEGEEDVVPFIKY 263
+R L L +N +++ +Y+++ I +K Y DA + + + + + D+ FIKY
Sbjct: 270 TARSLFYWYLLKNDYWLFEYMAISRVINGSKGQYRDAYLKTESDTFYKDDKGDLTYFIKY 329
Query: 264 LLGTVLAAYRDFADRFALVEIKLPAL---------ETVRRAALNKIGRFTKQD---IREL 311
L + + + + + +++ + +R+A + K T ++ I+E+
Sbjct: 330 NLECICRSLDEILEYLSKKQVEQKEVLNLINKSEDLNLRQAEILKEILKTPENIITIKEI 389
Query: 312 CPSLSISSIEG--GLRKLVSAGELKREGSGKNICY 344
+ +++ G L LV G L+++ +GK Y
Sbjct: 390 VTTYNVAYATGRADLNHLVDLGYLEKKKAGKEFVY 424
>gi|86130280|ref|ZP_01048880.1| cell filamentation protein-like (fic) [Cellulophaga sp. MED134]
gi|85818955|gb|EAQ40114.1| cell filamentation protein-like (fic) [Dokdonia donghaensis MED134]
Length = 322
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 94/342 (27%), Positives = 149/342 (43%), Gaps = 42/342 (12%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV 75
S L LI +I ++ G+ RP KL + +I++ +S IEG T +I L+
Sbjct: 14 SSILKLITSISEKIGEVNASYLDRPSP--KLRKQNRIKTIHSSLKIEGNTLTEEQITALL 71
Query: 76 KEKTTPKNRDEQEIAGYRDVLNI-----IHESFDAI-PLSQNYILQLHKILYSHMNNPMA 129
+ K I +DVL + I+E+ + P ++ L+ HK L M
Sbjct: 72 ENKRV--------IGPQKDVLEVLNAIKIYENLEQYKPSNEKSFLKAHKAL-------ME 116
Query: 130 GRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVF 189
G I+ Y + PFE L K EY + +E LI VF
Sbjct: 117 GLIEKSGTYRKQGVGIVKGSKVEHLAPPFENVSYLMKDLFEYLKKSDEIE---LIKSCVF 173
Query: 190 IHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIG 249
++ IHPF DGNGRM RL TL+L + + +++ E I+K+++ YY AL +
Sbjct: 174 HYEMEFIHPFLDGNGRMGRLWQTLILMEK-YPIFEFLPFETLISKDQEKYYKALAES--- 229
Query: 250 WHEGEEDVVPFIKYLLGTV---LAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQ 306
+ FI+Y+L + ++ DF +R + +L T LNK FT++
Sbjct: 230 --DNAGKSTAFIEYMLNVIHISISELLDFNNRTLSAKDRLAYYVT-----LNKT-EFTRK 281
Query: 307 DIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK 348
D + +S ++ L+K G ++ G KN YRLK
Sbjct: 282 DYMDTFKDISSATASRDLKKGAELGLFEKIGE-KNKTIYRLK 322
>gi|85716900|ref|ZP_01047865.1| hypothetical protein NB311A_00570 [Nitrobacter sp. Nb-311A]
gi|85696280|gb|EAQ34173.1| hypothetical protein NB311A_00570 [Nitrobacter sp. Nb-311A]
Length = 371
Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 12/198 (6%)
Query: 53 QSTEASNAIEGIVTTSTRIKQL-----VKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIP 107
Q S+ IEG T + + + +++TPK D +E+ YR LN +P
Sbjct: 54 QEAVLSSRIEGTQATLGEVLEFEAQGELFDESTPKKADIREVLNYRAALNEATRLLAELP 113
Query: 108 LSQNYILQLHKILYSHMN--NPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALD 165
LSQ I Q H +L + N G + + N+I + E F P A + +A+D
Sbjct: 114 LSQRLIRQTHGVLMQGVRGRNKDPGEYRRIANWIGPG-GCSVDEARFVPCAADKLPQAMD 172
Query: 166 KICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKY 225
+ + + + L+ + + +F IHPF DGNGR+ RL+ L LY NG
Sbjct: 173 A----WEQYLHADAPDKLVQLAIVHAEFEAIHPFLDGNGRLGRLVVPLFLYANGLLSRPN 228
Query: 226 ISLEAKIAKNKDLYYDAL 243
L + ++ YY+ L
Sbjct: 229 FYLSDYLESRREEYYERL 246
>gi|77919717|ref|YP_357532.1| hypothetical protein Pcar_2123 [Pelobacter carbinolicus DSM 2380]
gi|77545800|gb|ABA89362.1| conserved hypothetical protein [Pelobacter carbinolicus DSM 2380]
Length = 368
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 12/198 (6%)
Query: 53 QSTEASNAIEGIVTTSTRIKQLVKEKTTP-----KNRDEQEIAGYRDVLNIIHESFDAIP 107
Q S+ IEG TT + + E + K D QE+ YR LN + + +P
Sbjct: 54 QEAVLSSRIEGTQTTMGEVLEYEAEGESRAIEPGKKADIQEVLNYRRALNASVKMMEDLP 113
Query: 108 LSQNYILQLHKILYSHM--NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALD 165
L Q I + H++L + G + QN+I + E F P++P + +
Sbjct: 114 LCQRIIREAHRVLLDGVRGQGKDPGEYRKNQNWI-GPHGCTLEEARFVPISPDRLPDGMS 172
Query: 166 KICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKY 225
+ R I + L+ + + +F +HPF+DGNGR+ R++ L ++ G G
Sbjct: 173 A----WERHIHAEAQDHLVRLAILHAEFEALHPFHDGNGRLGRMMVPLYMFEKGLISGPM 228
Query: 226 ISLEAKIAKNKDLYYDAL 243
+ A ++D YYD L
Sbjct: 229 FYISAYFEAHRDEYYDRL 246
>gi|58583833|ref|YP_202849.1| hypothetical protein XOO4210 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84625636|ref|YP_453008.1| hypothetical protein XOO_3979 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|58428427|gb|AAW77464.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|84369576|dbj|BAE70734.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 387
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/228 (27%), Positives = 102/228 (44%), Gaps = 24/228 (10%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ I +AS+ IE IVTT+ + + +++ + +E YR L +E F +
Sbjct: 62 LINTIPILEAQASSEIENIVTTTDELFRYAEDQDKAQKPATKEALRYRSAL---YEGFQS 118
Query: 106 IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYI-----SAAYSDNHTEILFTPLAPFET 160
+ + L + + + RIK+VQ I +A +D +I++TP P
Sbjct: 119 LK---------QRPLCTDTSVVVCSRIKAVQMQIRRVPGTALANDQTQQIIYTP--PVGE 167
Query: 161 SEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
+ DK+ + N +V+PLI + V + F IHPF DGNGR R+L L+L G
Sbjct: 168 TLLRDKLANWERFIHENTDVDPLIRMAVAHYQFEAIHPFTDGNGRTGRILNLLMLIEQGL 227
Query: 221 YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
+ L I +++ YY L H E +I Y+L V
Sbjct: 228 LDLPVLYLSRYIIRHRSDYYRLLLDVTRHGHWAE-----WIHYMLAAV 270
>gi|21229691|ref|NP_635608.1| hypothetical protein XCC0213 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66766568|ref|YP_241330.1| hypothetical protein XC_0223 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21111175|gb|AAM39532.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66571900|gb|AAY47310.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 387
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 24/228 (10%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ + +AS+ IE IVTT+ + + +++ + +E YR L +E F +
Sbjct: 62 LINTIPMLEAQASSEIENIVTTTDELFRYAEDQGKAQKPATKEALRYRSAL---YEGFQS 118
Query: 106 IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYI-----SAAYSDNHTEILFTPLAPFET 160
+ + L + + + RIK+VQ I +A +D +I++TP P
Sbjct: 119 LK---------QRPLCTDTSVVVCSRIKAVQMQIRRVPGTALANDQTQQIIYTP--PVGE 167
Query: 161 SEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
+ DK+ + N +++PLI + V + F IHPF DGNGR R+L L+L G
Sbjct: 168 TLLRDKLANWERFIHENTDIDPLIRMAVAHYQFEAIHPFTDGNGRTGRVLNLLMLIEQGL 227
Query: 221 YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
+ L I +N+ YY L H E +I Y+L V
Sbjct: 228 LDLPVLYLSRYIIRNRSDYYRLLLDVTRHGHWAE-----WIHYMLAAV 270
>gi|147668840|ref|YP_001213658.1| filamentation induced by cAMP protein Fic [Dehalococcoides sp.
BAV1]
gi|146269788|gb|ABQ16780.1| filamentation induced by cAMP protein Fic [Dehalococcoides sp.
BAV1]
Length = 384
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 108/226 (47%), Gaps = 18/226 (7%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTT-PKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
S+ IEG T S+ L+ E T K RD +E+ Y + + + +PLS +I +L
Sbjct: 78 SSRIEG--TQSSLSDLLLFEATQIEKQRDVREVQNYVRAMEYGLKRLNELPLSLRFIREL 135
Query: 117 HKILYSHMNNPMA--GRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
H IL + A G + QN+I +A + + P P E E L+++ E++ +
Sbjct: 136 HGILMEGVRGEHATRGEFRQSQNWIGSAGATLNEATFVPPPVP-EMLECLNQL-EKF--L 191
Query: 175 IGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAK 234
+ E+ P++ + + F +HPF DGNGR+ RLL TLLL + + L A +
Sbjct: 192 HADTELPPIVQAAMVHYQFETVHPFLDGNGRIGRLLVTLLLCQKNVLAKPLLYLSAFFEQ 251
Query: 235 NKDLYYDALGR-AQIG-WHEGEEDVVPFIKYLLGTVLAAYRDFADR 278
++ YY+ L + +Q G W E +I++ L V D R
Sbjct: 252 HRQEYYELLLKVSQRGAWRE-------WIEFFLKAVTEQADDAVSR 290
>gi|145956009|ref|ZP_01805007.1| hypothetical protein CdifQ_04000430 [Clostridium difficile
QCD-32g58]
Length = 379
Score = 72.8 bits (177), Expect = 3e-11, Method: Composition-based stats.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 16/230 (6%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLH 117
S+ IEG +T K +++ K P N+ E I L ++ D + S +I LH
Sbjct: 72 SSVIEGAFSTRKIAKSIIRGKMKPSNKSEYMIYNNHRALEYGLDNLDKL-YSHKFIYNLH 130
Query: 118 KILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGN 177
IL + + ++ + Y+ D+ EI+ T L P + +D++ + N
Sbjct: 131 HILGENCLDSEEYEYRTEKVYVC----DSKGEIIHTGLDPLKIYNFMDELI----IFMEN 182
Query: 178 MEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKD 237
+V L+ + F+ +HPF+DGNGR SR L+ L L G+ K S+ I+KN+
Sbjct: 183 SKVNDLVKSTIIHFYFVYVHPFSDGNGRTSRALSYLYLINKGYDTFKEFSISYIISKNRT 242
Query: 238 LYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAA---YRDFADRFALVEI 284
YY A+ + ++ FI+++L +++ + RD DR +L I
Sbjct: 243 KYYKAI----LDVENKGYNLTVFIEFMLKSIIQSINEMRDMHDRKSLESI 288
>gi|116749488|ref|YP_846175.1| filamentation induced by cAMP protein Fic [Syntrophobacter
fumaroxidans MPOB]
gi|116698552|gb|ABK17740.1| filamentation induced by cAMP protein Fic [Syntrophobacter
fumaroxidans MPOB]
Length = 377
Score = 71.6 bits (174), Expect = 6e-11, Method: Composition-based stats.
Identities = 67/255 (26%), Positives = 114/255 (44%), Gaps = 22/255 (8%)
Query: 53 QSTEASNAIEGIVTTSTRIKQLV--KEKTTPKNRDE-QEIAGYRDVLNIIHESFDAIPLS 109
+ S+ IEG T T + + + +E P+ RD+ QE+ Y +N+ +PLS
Sbjct: 70 KEASTSSRIEG---TRTGMDEAILDREYIDPEKRDDWQEVQNYVQAMNLAVRELSTLPLS 126
Query: 110 QNYILQLHKILYSHM--NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKI 167
+ H+ L + + G + QN+I + + +F P AP E E + +
Sbjct: 127 NRLLRATHERLMQGVRGEHKPPGEFRRSQNWIGGT---SLQDAVFIPPAPEEVPELMSDL 183
Query: 168 CEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYIS 227
+ ++ ++V LI I + + F IHPF DGNGR+ RLL TL L +
Sbjct: 184 EKFWHN--EEIDVPHLIRIAISHYQFETIHPFLDGNGRIGRLLITLYLVGKRLLSKPSLY 241
Query: 228 LEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLP 287
L + K+K YYDAL + D+ ++K+ L V + + F ++
Sbjct: 242 LSDYMEKHKGAYYDALTTVR-----ASNDLSHWVKFFLVAVHETAKKGSHTFQ----QIL 292
Query: 288 ALETVRRAALNKIGR 302
AL + + L K+G+
Sbjct: 293 ALRSEVESKLFKLGK 307
>gi|51245026|ref|YP_064910.1| hypothetical protein DP1174 [Desulfotalea psychrophila LSv54]
gi|50876063|emb|CAG35903.1| hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 343
Score = 71.2 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 73/269 (27%), Positives = 124/269 (46%), Gaps = 28/269 (10%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLK-----QRPEELEKLVEIAKIQSTEASNAIEGIVTTSTR 70
S L L+A I ++ G + + + + ++L +L I +I++ + S AIEG + +
Sbjct: 9 SQILSLVAEISEKVGNIKAFQQSGGTDHKRDDL-RLRRINQIRTIQGSLAIEGNTLSEEQ 67
Query: 71 IKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAG 130
I ++ KT E + A R+ L + + +++ +L+ HK L M G
Sbjct: 68 ITAILGGKTVIAPLKEVQEA--RNALKVYGQMERWRFAARDDLLRAHKEL-------MLG 118
Query: 131 RIKSVQNYISAAYS--DNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPV 188
+ S Y S+ N I TP A + + + + + E PLI V
Sbjct: 119 LLDSAGQYRSSGVGIMKNEEVIHLTPPA-----DMVPTLMANLFSWLRDSEAHPLIKSCV 173
Query: 189 FIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQI 248
F ++F IHPF DGNGRM RL +L+L + + Y+ +E+ + + + YY AL +
Sbjct: 174 FHYEFEFIHPFADGNGRMGRLWQSLIL-SDWHEIFAYLPVESLVYQYQSEYYRALNEST- 231
Query: 249 GWHEGEEDVVPFIKYLLGTVLAAYRDFAD 277
+ D PFI +LG VL + + F D
Sbjct: 232 ----NQADSAPFISLMLGLVLNSLQAFID 256
>gi|153003479|ref|YP_001377804.1| filamentation induced by cAMP protein Fic [Anaeromyxobacter sp.
Fw109-5]
gi|152027052|gb|ABS24820.1| filamentation induced by cAMP protein Fic [Anaeromyxobacter sp.
Fw109-5]
Length = 412
Score = 71.2 bits (173), Expect = 9e-11, Method: Composition-based stats.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 16/207 (7%)
Query: 22 IAAIYKEAGKQEMYLKQRPEELEKLVEIAKI---QSTEASNAIEGIVTTSTRIKQLVKEK 78
+AA A + L + P L L +A+ + AS+ IEG+V + R+ + E
Sbjct: 46 VAAAVSTAERAVDALNRDPPRLASLEVLARRLLRAESVASSRIEGLVLSQRRLAR--AEA 103
Query: 79 TTPKNRDEQEIAGYRDVLNIIHE---SFDAIPLSQNYILQLHKILYSHMNNP-MAGRIKS 134
P RDE + +V+ + H +A PL +L +H+ L P +AG+++
Sbjct: 104 EEPDARDETARSVLGNVVAMEHAVTLGTNAKPLRLRDVLDIHRHLMLATTTPEIAGKLRD 163
Query: 135 VQNYISA-AYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDF 193
QN+I A++ + F P AP + +D + NR M++ P++ + F
Sbjct: 164 RQNWIGGNAFNPGRAD--FVPPAPERVKDLMDDLVAFINR----MDLPPVVQAAIAHAQF 217
Query: 194 LCIHPFNDGNGRMSRLLTTLLLYRNGF 220
IHPF DGNGR+ R L ++L R G
Sbjct: 218 ETIHPFADGNGRVGRALIHVVLRRRGL 244
>gi|109728576|ref|ZP_01379987.1| hypothetical protein RbelO_01000779 [Rickettsia bellii OSU 85-389]
Length = 325
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 47/318 (14%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIH--ES 102
KL + +I++ ++S AIEG + ++ L+ K +A +D+L + + E
Sbjct: 38 KLRKNNQIKTLQSSLAIEGNTLSIEQVTDLINGKRV--------LAPEKDILEVKNAIEL 89
Query: 103 FDAI----PLSQNYILQLHKILYS-------HMNNPMAGRIKSVQNYISAAYSDNHTEIL 151
+D + P + +L+ HKIL + AG K + + A + IL
Sbjct: 90 YDNLAIFNPFGIDSLLKAHKILMQGLITDNGYWRKGNAGIFKGTE-LVHFAPPPSRIPIL 148
Query: 152 FTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLT 211
L F T ++ + +I +F ++F IHPF+DGNGR+ RL
Sbjct: 149 MQDLFEFTTQDSNTSL---------------IIKACIFHYEFEFIHPFSDGNGRIGRLWQ 193
Query: 212 TLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAA 271
LLL +N + +YIS+E+ I N+ YY L + GE + FI+++L +LAA
Sbjct: 194 QLLLMQNN-RIFEYISVESLIRNNQSKYYSVLSKCD---KLGESTL--FIEFMLDQILAA 247
Query: 272 YRDFADRFAL-VEIKLPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSA 330
+ +++ L +E + A NK FT++D + ++S ++ L +
Sbjct: 248 LKLYSNNIIYEANSPLSRIEFTKTALTNKW--FTRKDYIAVHKNISTATASRDLAYGLEQ 305
Query: 331 GELKREGSGKNICYYRLK 348
G L +G KN YY+ K
Sbjct: 306 GILMSKGE-KNQTYYKFK 322
>gi|91205754|ref|YP_538109.1| Cell filamentation protein Fic [Rickettsia bellii RML369-C]
gi|91069298|gb|ABE05020.1| Cell filamentation protein Fic [Rickettsia bellii RML369-C]
Length = 325
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 83/318 (26%), Positives = 144/318 (45%), Gaps = 47/318 (14%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIH--ES 102
KL + +I++ ++S AIEG + ++ L+ K +A +D+L + + E
Sbjct: 38 KLRKNNQIKTLQSSLAIEGNTLSIEQVTDLINGKRV--------LAPEKDILEVKNAIEL 89
Query: 103 FDAI----PLSQNYILQLHKILYS-------HMNNPMAGRIKSVQNYISAAYSDNHTEIL 151
+D + P + +L+ HKIL + AG K + + A + IL
Sbjct: 90 YDNLAIFNPFEIDSLLKAHKILMQGLITDNGYWRKGNAGIFKGTE-LVHFAPPPSRIPIL 148
Query: 152 FTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLT 211
L F T ++ + +I +F ++F IHPF+DGNGR+ RL
Sbjct: 149 MQDLFEFTTQDSNTSL---------------IIKACIFHYEFEFIHPFSDGNGRIGRLWQ 193
Query: 212 TLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAA 271
LLL +N + +YIS+E+ I N+ YY L + GE + FI+++L +LAA
Sbjct: 194 QLLLMQNN-RIFEYISVESLIRNNQSKYYSVLSKCD---KLGESTL--FIEFMLDQILAA 247
Query: 272 YRDFADRFAL-VEIKLPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSA 330
+ +++ L +E + A NK FT++D + ++S ++ L +
Sbjct: 248 LKLYSNNIIYEANSPLSRIEFTKTALTNKW--FTRKDYIAVHKNISTATASRDLAYGLEQ 305
Query: 331 GELKREGSGKNICYYRLK 348
G L +G KN YY+ K
Sbjct: 306 GILMSKGE-KNQTYYKFK 322
>gi|150398854|ref|YP_001322621.1| filamentation induced by cAMP protein Fic [Methanococcus vannielii
SB]
gi|150011557|gb|ABR54009.1| filamentation induced by cAMP protein Fic [Methanococcus vannielii
SB]
Length = 429
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 84/334 (25%), Positives = 159/334 (47%), Gaps = 24/334 (7%)
Query: 29 AGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQE 88
+G L+ P E E+ + + ++ AS+ IEG VTT K+++K+ PKN+D++
Sbjct: 97 SGNLSTALESIPSEKERYIIDSLMEEAIASSQIEGAVTTRNVAKEMLKKGRKPKNKDQKM 156
Query: 89 IAGYRDVLNIIHESFDAIPLSQNYILQLHKILYS-HMNNP-MAGRIKSVQNYISAAYSDN 146
I + + I + S IL++HK++ + +P G+ + N I A YS +
Sbjct: 157 ILNNYNTMKYIL-TIKNKEFSVEEILKIHKLITDGTLEDPEFVGKFRK-DNEI-AVYSTD 213
Query: 147 HTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRM 206
T +L P + +++ CE N + I F+ + IHPFNDGNGR
Sbjct: 214 GT-LLHQPPEYGLVEKLMEEFCEFSNSKDKFIHPIIKGIIIHFLIGY--IHPFNDGNGRT 270
Query: 207 SRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIG--WHEGEEDVVPFIKYL 264
+R L L +N +++ +Y+++ I +K Y DA + + + + + D+ FIKY
Sbjct: 271 ARSLFYWYLLKNDYWLFEYMAISRVINGSKGQYRDAYLKTESDTFYKDDKGDLTYFIKYN 330
Query: 265 LGTVLAAYRDFADRFALVE------IKLPALE---TVRRAALNKIGRFTKQD---IRELC 312
L + + + + ++ + +KL + +R+A + K T ++ I+E+
Sbjct: 331 LECICKSLDEILNYLSIKQAEQKEVLKLISKSEDLNLRQAEILKEILKTPENIITIKEIV 390
Query: 313 PSLSISSIEG--GLRKLVSAGELKREGSGKNICY 344
+ +++ G L LV G L+++ +GK Y
Sbjct: 391 KTYNVAYATGRADLNHLVDLGYLEKKKAGKEFVY 424
>gi|149115246|ref|ZP_01841991.1| filamentation induced by cAMP protein Fic [Shewanella baltica
OS223]
gi|146864871|gb|EDK50242.1| filamentation induced by cAMP protein Fic [Shewanella baltica
OS223]
Length = 456
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 29/307 (9%)
Query: 57 ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
+S+ +EG TT+ K+++++K P E+ I G D++N + D S + I L
Sbjct: 159 SSSQLEGAATTTLIAKEMLRKKRRPCTDGERMIFGNADLMNAAWDLKDE-AFSIDLIKTL 217
Query: 117 HKI--LYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
H++ Y N +G ++ + I+ +D E+L P L ++ N
Sbjct: 218 HRMGTQYLEQKNYTSGMFRTTDD-IAVVNADG--EVLHQPPKHDAIECLLSRVVNWLNST 274
Query: 175 IGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAK 234
+ + P+I +HPF DGNGR++R L L++ G+ +YI++ A + K
Sbjct: 275 --DDHIHPVIQAITLHFVIGYVHPFRDGNGRIARALFYWYLFKCGYTGFRYITISALLKK 332
Query: 235 NKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV-------LAAYRDFADRFALVEIKLP 287
+ Y G++ + D+ FI+Y L + ++AY A R + +
Sbjct: 333 SPIKY----GQSYLDCEHDNLDLTYFIRYQLSIINRAITEFVSAYERAAYRMTELAEQYT 388
Query: 288 ALETVRRAALN---------KIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGS 338
LE + + + K T +++ +L LS ++++ L +V+AG L RE
Sbjct: 389 NLEDIEKKIIGFVACEPHYRKKSTITAREVEKLL-GLSYNTVKQRLDDMVTAGILGREKI 447
Query: 339 GKNICYY 345
GK Y+
Sbjct: 448 GKATEYF 454
>gi|95928323|ref|ZP_01311071.1| filamentation induced by cAMP protein Fic [Desulfuromonas
acetoxidans DSM 684]
gi|95135594|gb|EAT17245.1| filamentation induced by cAMP protein Fic [Desulfuromonas
acetoxidans DSM 684]
Length = 373
Score = 70.9 bits (172), Expect = 1e-10, Method: Composition-based stats.
Identities = 58/207 (28%), Positives = 97/207 (46%), Gaps = 20/207 (9%)
Query: 49 IAKIQSTEA--SNAIEGIVTTSTRIKQLVKEKTTPKN-----RDEQ-EIAGYRDVLNIIH 100
+A +++ EA S+ +EG V+T I Q + + R E E Y+ L
Sbjct: 54 LAPLRNQEAVISSRMEGTVSTMDEILQYEADYSGESGEVGDVRSEVIETILYQRALKATQ 113
Query: 101 ESF-DAIPLSQNYILQLHKILYS--HMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAP 157
++ D LS++ I +H+ L S G+ K+ QNY++ + N ILF P++P
Sbjct: 114 QAMSDGYGLSKSLIKSIHQRLLSLGRGAKKSPGQFKTEQNYLADKFKKN---ILFVPISP 170
Query: 158 FETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLLLY 216
LD + E + EP++ H +F +HPF DGNGR+ R+L TL+++
Sbjct: 171 ESLESGLDHLFEYIHN-----STEPVLIKTGITHVEFEALHPFKDGNGRIGRMLITLMMW 225
Query: 217 RNGFYVGKYISLEAKIAKNKDLYYDAL 243
G + + + +NKD Y D +
Sbjct: 226 NCGLISAPHFYISGFLEENKDTYIDTM 252
>gi|83571354|ref|ZP_00922794.1| COG3177: Uncharacterized conserved protein [Shigella dysenteriae
1012]
Length = 431
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 60/200 (30%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 34 MYLKQRPEELEKL-VEIAKIQSTE--ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIA 90
+ LK + E L E+++++ E S+ +EG TT+ +++++ +P+ DE IA
Sbjct: 102 LALKDQTERLRGAGAELSQLRLEEPITSSQLEGANTTTLVARKMLETGRSPRTEDEHMIA 161
Query: 91 GYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPM--AGRIKSVQNYISAAYSDNHT 148
G ++ I A PL+ I QLH I +N+ G + + + A Y N
Sbjct: 162 GNARLMAEIPHLL-AEPLTPALIRQLHAIGMGGINDAKYRPGEFRETDDVVIADYDGN-- 218
Query: 149 EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSR 208
I+ P A E L+K+C+ N G + PLI + HPF DGNGR SR
Sbjct: 219 -IVHQPPAATLLPERLEKVCQWLNSHEG--YIHPLIRACILHFMLAHEHPFRDGNGRTSR 275
Query: 209 LLTTLLLYRNGFYVGKYISL 228
L + ++G+ V KYIS+
Sbjct: 276 ALFYWYMLKSGYDVFKYISI 295
>gi|91213103|ref|YP_543089.1| hypothetical protein UTI89_C4130 [Escherichia coli UTI89]
gi|117625868|ref|YP_859191.1| hypothetical protein APECO1_2865 [Escherichia coli APEC O1]
gi|91074677|gb|ABE09558.1| hypothetical protein UTI89_C4130 [Escherichia coli UTI89]
gi|115514992|gb|ABJ03067.1| conserved hypothetical protein [Escherichia coli APEC O1]
Length = 431
Score = 70.5 bits (171), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 11/202 (5%)
Query: 34 MYLKQRPEELEKL-VEIAKIQSTE--ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIA 90
+ LK + E L E+++++ E S+ +EG TT+ +++++ +P+ DE IA
Sbjct: 102 LALKDQTERLRGAGAELSQLRLEEPITSSQLEGANTTTLVARKMLETGRSPRTEDEHMIA 161
Query: 91 GYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPM--AGRIKSVQNYISAAYSDNHT 148
G ++ I A PL+ I QLH I +N+ G + + + A Y N
Sbjct: 162 GNARLMAEIPHLL-AEPLTPALIRQLHAIGMGGINDAKYRPGEFRETDDVVIADYDGN-- 218
Query: 149 EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSR 208
I+ P A E L+K+C+ N G + PL+ + HPF DGNGR SR
Sbjct: 219 -IVHQPSAAALLPERLEKVCQWLNSHEG--YIHPLVRACILHFMLAHEHPFRDGNGRTSR 275
Query: 209 LLTTLLLYRNGFYVGKYISLEA 230
L + ++G+ V KYIS+ +
Sbjct: 276 ALFYWYMLKSGYDVFKYISISS 297
>gi|26250231|ref|NP_756271.1| hypothetical protein c4409 [Escherichia coli CFT073]
gi|26110660|gb|AAN82845.1|AE016768_263 Hypothetical protein c4409 [Escherichia coli CFT073]
Length = 431
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/202 (29%), Positives = 97/202 (48%), Gaps = 11/202 (5%)
Query: 34 MYLKQRPEELEKL-VEIAKIQSTE--ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIA 90
+ LK + E L E+++++ E S+ +EG TT+ +++++ +P+ DE IA
Sbjct: 102 LALKDQTERLRGAGAELSQLRLEEPITSSQLEGANTTTLVARKMLETGRSPRTEDEHMIA 161
Query: 91 GYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPM--AGRIKSVQNYISAAYSDNHT 148
G ++ I A PL+ I QLH I +N+ G + + + A Y N
Sbjct: 162 GNARLMAEIPHLL-AEPLTPALIRQLHAIGMGGINDAKYRPGEFRETDDVVIADYDGN-- 218
Query: 149 EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSR 208
I+ P A E L+K+C+ N G + PL+ + HPF DGNGR SR
Sbjct: 219 -IVHQPPAAALLPERLEKVCQWLNSHEG--YIHPLVRACILHFMLAHEHPFRDGNGRTSR 275
Query: 209 LLTTLLLYRNGFYVGKYISLEA 230
L + ++G+ V KYIS+ +
Sbjct: 276 ALFYWYMLKSGYDVFKYISISS 297
>gi|78045796|ref|YP_361971.1| putative regulatory protein, Fic family [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78034226|emb|CAJ21871.1| putative regulatory protein, Fic family [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 379
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 24/228 (10%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ + +AS+ IE IVTT+ + + ++ +N +E YR L +E F +
Sbjct: 57 LINTIPVLEAQASSEIENIVTTTDDLFRYADDQERAQNPATKEALRYRSAL---YEGFQS 113
Query: 106 IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYI-----SAAYSDNHTEILFTPLAPFET 160
+ + L + + RIK+VQ I +A +D +I++TP P
Sbjct: 114 LR---------QRPLCTETAIVVCSRIKAVQMQIRRVPGTALANDQIQQIIYTP--PVGE 162
Query: 161 SEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
+ DK+ + + +V+PLI + V + F IHPF DGNGR R+L L+L G
Sbjct: 163 TLLRDKLANWERFIHEHTDVDPLIRMAVAHYQFEAIHPFTDGNGRTGRVLNLLMLIEQGL 222
Query: 221 YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
+ L I +++ YY L H E +I Y+L V
Sbjct: 223 LDVPVLYLSRYIIRHRSDYYRLLLDVTRHGHWAE-----WIHYMLAAV 265
>gi|15804129|ref|NP_290168.1| hypothetical protein Z5009 [Escherichia coli O157:H7 EDL933]
gi|15833719|ref|NP_312492.1| hypothetical protein ECs4465 [Escherichia coli O157:H7 str. Sakai]
gi|12518327|gb|AAG58732.1|AE005585_6 orf; hypothetical protein [Escherichia coli O157:H7 EDL933]
gi|13363940|dbj|BAB37888.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
Length = 431
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 59/200 (29%), Positives = 96/200 (48%), Gaps = 11/200 (5%)
Query: 34 MYLKQRPEELEKL-VEIAKIQSTE--ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIA 90
+ LK + E L E+++++ E S+ +EG TT+ +++++ +P+ DE IA
Sbjct: 102 LALKDQTERLRGAGAELSQLRLEEPITSSQLEGANTTTLVARKMLETGRSPRTEDEHMIA 161
Query: 91 GYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPM--AGRIKSVQNYISAAYSDNHT 148
G ++ I A PL+ I QLH I +N+ G + + + A Y N
Sbjct: 162 GNARLMAEIPHLL-AEPLTPALIRQLHAIGMGGINDAKYRPGEFRETDDVVIADYDGN-- 218
Query: 149 EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSR 208
I+ P A E L+K+C+ N G + PL+ + HPF DGNGR SR
Sbjct: 219 -IVHQPPAAALLPERLEKVCQWLNSHEG--YIHPLVRACILHFMLAHEHPFRDGNGRTSR 275
Query: 209 LLTTLLLYRNGFYVGKYISL 228
L + ++G+ V KYIS+
Sbjct: 276 ALFYWYMLKSGYDVFKYISI 295
>gi|149199026|ref|ZP_01876066.1| hypothetical protein LNTAR_23994 [Lentisphaera araneosa HTCC2155]
gi|149137815|gb|EDM26228.1| hypothetical protein LNTAR_23994 [Lentisphaera araneosa HTCC2155]
Length = 379
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 76/306 (24%), Positives = 128/306 (41%), Gaps = 33/306 (10%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFD 104
+L ++ + + S IEG TT + E + + +EI + + I S
Sbjct: 40 QLKQLFHMLESIGSARIEGNNTTVASFVETRIEDRPYIDENIKEIRNIEETMEFIDNSIR 99
Query: 105 AIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEAL 164
L+++Y+ +LH + + P G + A+ ++ EI + P ET+ +
Sbjct: 100 ERGLTKSYLKELHYGIVKGLTPPPKGE----GDANPGAFRNHGVEITGSDHIPPETAHEV 155
Query: 165 DKICEEYNRVIGNMEVEP--LIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV 222
+ +E I L+ + + H F+ IHPF +GNGR RLLT +L GF V
Sbjct: 156 EAYIDELIEFINKDHPAKYDLLKVAIAHHRFMWIHPFGNGNGRTGRLLTYAMLVSQGFRV 215
Query: 223 --GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFI-----------------KY 263
G+ ++ A N+D+Y + L +A EG E ++ Y
Sbjct: 216 GEGRILNPTAVFCINRDIYNEQLAKADSNTSEGIESWCCYVLDGLKEEIAKIDRLTDYSY 275
Query: 264 LLGTVLAAYRDFADRFALVEIKLPA--LETVRRAALNKIGRFTKQDIRELCPSLSISSIE 321
L+ +L DF+ + LV A LETV++ ++ DI+ L P +SI
Sbjct: 276 LVRYILKPSLDFSLKQKLVNEDEYAILLETVKKQSIQ------NSDIQALFPKEQSTSIS 329
Query: 322 GGLRKL 327
LR L
Sbjct: 330 RRLRHL 335
>gi|148264778|ref|YP_001231484.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
gi|146398278|gb|ABQ26911.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
Length = 251
Score = 69.3 bits (168), Expect = 4e-10, Method: Composition-based stats.
Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 28/250 (11%)
Query: 32 QEMYLKQRP---EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR---D 85
QE + RP + L++L E +I T ASNA+EG T T K ++++ T + D
Sbjct: 14 QEEISQHRPLKGQALKQLREYFRIGLTWASNALEGNSLTETETKVVIEDGITIGGKPLKD 73
Query: 86 EQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSD 145
E G+ + + + + +++ IL+LH++ Y ++ AG + QN +
Sbjct: 74 HFEAIGHAEAFDYLQKLARRTEITERDILKLHRLFYYRIDEANAGHYRK-QNIVVTG--- 129
Query: 146 NHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGR 205
T+ +F AP E + +E R+ E P+ + + IHPF DGNGR
Sbjct: 130 --TDFVFP--APSELKGLMAAFADEIPRL--RAEKHPIEFAALLHVRLVTIHPFVDGNGR 183
Query: 206 MSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
+RLL L L + G+ V ++ + +++ Y A+ + G +V PF+K
Sbjct: 184 AARLLMNLALLQEGYPV----TIIPPVLRSE--YLAAVRESNTG------NVAPFVKLFS 231
Query: 266 GTVLAAYRDF 275
V + RD+
Sbjct: 232 SMVWESQRDY 241
>gi|53715136|ref|YP_101128.1| hypothetical protein BF3852 [Bacteroides fragilis YCH46]
gi|52218001|dbj|BAD50594.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 377
Score = 68.9 bits (167), Expect = 5e-10, Method: Composition-based stats.
Identities = 61/269 (22%), Positives = 126/269 (46%), Gaps = 26/269 (9%)
Query: 11 NQKWDSGTLGLIAAIYKE---AGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTT 67
N++W + +I + K G+ +MY + P ++ + + ++ S+ IEG T
Sbjct: 26 NKEWLLDNMEIITLLSKADRMLGRLDMYSEHIPN-IDLFISMHIMKEATQSSKIEG---T 81
Query: 68 STRIKQ--LVKEKTTPKNRDE-QEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHM 124
T +++ L KE RD+ E+ Y + +N + + +P S I +H+IL + +
Sbjct: 82 QTNMEEAILSKEDVPLDRRDDWMEVHNYINAMNEAVKMLEELPFSSRLIRNVHRILMNGV 141
Query: 125 --NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEV-- 180
+ G + QN+I + + + +F P T ++ ++ E+ + + N ++
Sbjct: 142 RGEHKQPGEFRKSQNWIGGS---SINDAIFVP----PTHNSIPELMEDIEKFVHNDKLFF 194
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
L+ I + + F IHPF DGNGR RL+ TL L G + L + K+++ YY
Sbjct: 195 PELLKIALIHYQFETIHPFLDGNGRTGRLMITLYLVSRGILKRPILYLSDYLEKHRNSYY 254
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVL 269
L ++ + +++ + ++ L ++
Sbjct: 255 TNLMHVRV-----DNNIIDWFRFFLTGII 278
>gi|20090718|ref|NP_616793.1| hypothetical protein MA1868 [Methanosarcina acetivorans C2A]
gi|19915772|gb|AAM05273.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 473
Score = 68.2 bits (165), Expect = 8e-10, Method: Composition-based stats.
Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 18/226 (7%)
Query: 57 ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRD----VLNIIHESFDAIPLSQNY 112
AS+ IEG TT K++++E PKN+DE+ I D +++I +E+F +
Sbjct: 168 ASSQIEGAATTREIAKKMLQENRKPKNKDEKMIVNNYDTVKHIVDIKNEAF-----TPER 222
Query: 113 ILQLHKILYS-HMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEY 171
IL++H+++ + P N I A YS + T +L P+ E + + ++C+ +
Sbjct: 223 ILEIHRMITGGTLEQPQYEGNFRESNEI-AVYSHDGT-LLHKPVEYTEVPKLVKELCD-F 279
Query: 172 NRVIGNMEVEPLIAIPVFIHDFLC--IHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLE 229
+ + P+I + IH FL IHPFNDGNGR +R L L +N +++ +Y+++
Sbjct: 280 AKSKDEDFIHPVIK-GIIIH-FLVGYIHPFNDGNGRTARALFYWYLIKNDYWLFEYMAVS 337
Query: 230 AKIAKNKDLYYDALGRAQIGWHEGEE-DVVPFIKYLLGTVLAAYRD 274
I +K Y +A + + D+ FIKY L + A D
Sbjct: 338 RVINNSKKQYRNAYIYTESDRTPNDSGDLTYFIKYNLDCIQKALDD 383
>gi|121635113|ref|YP_975358.1| hypothetical protein NMC1357 [Neisseria meningitidis FAM18]
gi|120866819|emb|CAM10577.1| hypothetical protein [Neisseria meningitidis FAM18]
Length = 375
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 36 LKQRPEELEK---LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGY 92
LKQ E + L+ + AS+ IE IVTT+ ++ Q ++ T ++ +E Y
Sbjct: 41 LKQAAELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQY 100
Query: 93 RDVLNIIHESFDAIPL-SQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEIL 151
R L +ES + PL +Q I+ + I +P I+ +A N ++
Sbjct: 101 RTALFAGYESLTSRPLCTQTAIMVCNAI-----KHPYEMAIRKTGG--TALKGGNSGNVV 153
Query: 152 FTPLAPFETSEALDKICEEYNRVIGNM-EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLL 210
+TP E E + + R I +++PLI + + F IHPF DGNGR R+L
Sbjct: 154 YTPP---EGEETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRIL 210
Query: 211 TTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
+LLL G + L I +N+ YY L
Sbjct: 211 NSLLLIEKGLLDLPILYLSRYIIENRADYYRLL 243
>gi|15794529|ref|NP_284351.1| hypothetical protein NMA1635 [Neisseria meningitidis Z2491]
gi|121052435|emb|CAM08771.1| hypothetical protein [Neisseria meningitidis Z2491]
Length = 375
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 36 LKQRPEELEK---LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGY 92
LKQ E + L+ + AS+ IE IVTT+ ++ Q ++ T ++ +E Y
Sbjct: 41 LKQAAELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQY 100
Query: 93 RDVLNIIHESFDAIPL-SQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEIL 151
R L +ES + PL +Q I+ + I +P I+ +A N ++
Sbjct: 101 RTALFAGYESLTSRPLCTQTAIMVCNAI-----KHPYEMAIRKTGG--TALKGGNSGNVV 153
Query: 152 FTPLAPFETSEALDKICEEYNRVIGNM-EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLL 210
+TP E E + + R I +++PLI + + F IHPF DGNGR R+L
Sbjct: 154 YTPP---EGEETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRIL 210
Query: 211 TTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
+LLL G + L I +N+ YY L
Sbjct: 211 NSLLLIEKGLLDLPILYLSRYIIENRADYYRLL 243
>gi|15676370|ref|NP_273506.1| hypothetical protein NMB0459 [Neisseria meningitidis MC58]
gi|7225685|gb|AAF40896.1| conserved hypothetical protein [Neisseria meningitidis MC58]
Length = 369
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 36 LKQRPEELEK---LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGY 92
LKQ E + L+ + AS+ IE IVTT+ ++ Q ++ T ++ +E Y
Sbjct: 41 LKQAAELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQY 100
Query: 93 RDVLNIIHESFDAIPL-SQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEIL 151
R L +ES + PL +Q I+ + I +P I+ +A N ++
Sbjct: 101 RTALFAGYESLTSRPLCTQTAIMVCNAI-----KHPYEMAIRKTGG--TALKGGNSGNVV 153
Query: 152 FTPLAPFETSEALDKICEEYNRVIGNM-EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLL 210
+TP E E + + R I +++PLI + + F IHPF DGNGR R+L
Sbjct: 154 YTPP---EGEETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRIL 210
Query: 211 TTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
+LLL G + L I +N+ YY L
Sbjct: 211 NSLLLIEKGLLDLPILYLSRYIIENRADYYRLL 243
>gi|113950439|ref|ZP_01436065.1| filamentation induced by cAMP protein Fic [Shewanella baltica
OS195]
gi|113907124|gb|EAU25850.1| filamentation induced by cAMP protein Fic [Shewanella baltica
OS195]
Length = 485
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 71/306 (23%), Positives = 137/306 (44%), Gaps = 27/306 (8%)
Query: 57 ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
+S+ +EG TT+ K+++++K P E+ I G D++N + D S + I L
Sbjct: 188 SSSQLEGAATTTLIAKEMLRKKRRPCTDGERMIVGNADLMNAAWDLKDE-AFSVDLIKTL 246
Query: 117 HKI--LYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
H++ Y N +G ++ + I+ +D E++ P L ++ N
Sbjct: 247 HRMGTQYLEQKNYTSGMFRTTDD-IAVMNADG--EVVHQPPKHDAIECLLSRVVNWLNST 303
Query: 175 IGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAK 234
+ + P+I +HPF DGNGR++R L L++ G+ +YI++ + K
Sbjct: 304 --DDHIHPVIQAITLHFVIGYVHPFRDGNGRIARALFYWYLFKCGYTGFRYIAISTLLKK 361
Query: 235 NKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV-------LAAYRDFADRFALVEIKLP 287
+ Y G++ + + D+ FI+Y L + ++AY A R + +
Sbjct: 362 SPIKY----GQSYLDCEHDKLDLTYFIRYQLSIINRAITEFVSAYERAAYRMTELAEQYS 417
Query: 288 ALETVRRAALNKIG---RFTKQDI-----RELCPSLSISSIEGGLRKLVSAGELKREGSG 339
L+ + + + + R+ K+ E LS ++++ L +V+AG L+RE G
Sbjct: 418 DLDDIEKKIIGFVAGEPRYQKKPTITAREAEKLLGLSYNTVKQKLDGMVTAGILRREKIG 477
Query: 340 KNICYY 345
K Y+
Sbjct: 478 KATEYF 483
>gi|59801837|ref|YP_208549.1| hypothetical protein NGO1499 [Neisseria gonorrhoeae FA 1090]
gi|59718732|gb|AAW90137.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
Length = 369
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 36 LKQRPEELEK---LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGY 92
LKQ E + L+ + AS+ IE IVTT+ ++ Q ++ T ++ +E Y
Sbjct: 41 LKQAAELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQY 100
Query: 93 RDVLNIIHESFDAIPL-SQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEIL 151
R L +ES + PL +Q I+ + I +P I+ +A N ++
Sbjct: 101 RTALFAGYESLASRPLCTQTAIMVCNAI-----KHPYETAIRKTGG--TALKGGNSGNVV 153
Query: 152 FTPLAPFETSEALDKICEEYNRVIGNM-EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLL 210
+TP E E + + R I +++PL+ + + F IHPF DGNGR R+L
Sbjct: 154 YTPP---EGEETIRGKLANWERFIHESGDLDPLVIMAAAHYQFEAIHPFTDGNGRTGRIL 210
Query: 211 TTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
+LLL G + L I +N+ YY L
Sbjct: 211 NSLLLIEKGLLDLPILYLSRYIIENRADYYRLL 243
>gi|15677282|ref|NP_274435.1| hypothetical protein NMB1423 [Neisseria meningitidis MC58]
gi|7226662|gb|AAF41784.1| conserved hypothetical protein [Neisseria meningitidis MC58]
Length = 375
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 61/213 (28%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 36 LKQRPEELEK---LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGY 92
LKQ E + L+ + AS+ IE IVTT+ ++ Q ++ T ++ +E Y
Sbjct: 41 LKQAAELIPNQAMLINTLPVMEARASSEIENIVTTTDKLFQSLQMDTERQDPATKEALQY 100
Query: 93 RDVLNIIHESFDAIPL-SQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEIL 151
R L +ES + PL +Q I+ + I +P I+ +A N ++
Sbjct: 101 RTALFAGYESLTSRPLCTQTAIMVCNAI-----KHPYEMAIRKTGG--TALKGGNSGNVV 153
Query: 152 FTPLAPFETSEALDKICEEYNRVIGNM-EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLL 210
+TP E E + + R I +++PLI + + F IHPF DGNGR R+L
Sbjct: 154 YTPP---EGEETIRGKLANWERFIHESGDLDPLIIMAAAHYQFEAIHPFTDGNGRTGRIL 210
Query: 211 TTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
+LLL G + L I +N+ YY L
Sbjct: 211 NSLLLIEKGLLDLPILYLSRYIIENRADYYRLL 243
>gi|84494386|ref|ZP_00993505.1| hypothetical protein JNB_06309 [Janibacter sp. HTCC2649]
gi|84383879|gb|EAP99759.1| hypothetical protein JNB_06309 [Janibacter sp. HTCC2649]
Length = 145
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 206 MSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
M+R LT LL G+ VG+Y+SLE IA+ D YY AL + W + D P++KY
Sbjct: 1 MARALTNALLAEAGYGVGRYVSLEQLIAETADDYYRALLDSTHDWDDHANDPWPWLKYFS 60
Query: 266 GTVLAAYRDFADRFALVEIKLPALETVRRAALNKIGR-FTKQDIRELCPSLSISSIEGGL 324
+ Y FA+ A E VR L F D+R P +S +I L
Sbjct: 61 QLLAQGYARFAEGVAADRSGGTKAERVREHVLRHGATVFAISDVRAALPGISDPTIRLVL 120
Query: 325 RKLVSAGELKREGSGKNICYYRL 347
+L G ++ +G+G++ + R+
Sbjct: 121 NELKDEGLVRPQGTGRSAVWLRV 143
>gi|42528141|ref|NP_973239.1| Fic family protein [Treponema denticola ATCC 35405]
gi|41819186|gb|AAS13158.1| Fic family protein [Treponema denticola ATCC 35405]
Length = 328
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 82/342 (23%), Positives = 154/342 (45%), Gaps = 43/342 (12%)
Query: 13 KWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIK 72
K S + LI+ I ++ G E+ + E +L + +I++ +S +IE T +I
Sbjct: 8 KITSKAINLISQISEKIG--EISALENTERTVQLRKKNRIKTIHSSLSIENNSLTIEQIT 65
Query: 73 QLVKEKTT--PKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAG 130
+++ K P N EI ++ + + P QN +L+ H+++ + +
Sbjct: 66 AIIEGKRVLGPPN----EIQEVKNAVQAYELLLNLNPYKQNDLLKAHQLMMNDL------ 115
Query: 131 RIKSVQNYISAAYS--DNHTEILFTPLA---PFETSEALDKICEEYNRVIGNMEVEPLIA 185
+K Y D + P A PF ++ D + + +V PLI
Sbjct: 116 -VKHSGKYRKGGVGIFDGKGVVHVAPPADRVPFLMNDLFD--------WLKSTDVHPLIK 166
Query: 186 IPVFIHDFLCIHPFNDGNGRMSRLLTTLLL--YRNGFYVGKYISLEAKIAKNKDLYYDAL 243
VF ++F IHPF DGNGRM RL T++L ++ F ++ +E I +N+ LYY AL
Sbjct: 167 SCVFHYEFEFIHPFEDGNGRMGRLWQTVILTEWKPIF---AWLPIETLIKENQKLYYKAL 223
Query: 244 GRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRR----AALNK 299
G + + D FI+++L +L ++ + K+ TV + A++
Sbjct: 224 GIS-----DNNADSTEFIEFMLSIILKTIKEIITTELKITQKITQKITVNQQKIIASIKN 278
Query: 300 IGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKN 341
T++++ E+ ++ I+ ++KL +KR G+ K+
Sbjct: 279 NPYITQEELAEIVGIARLNIIK-NMKKLQEQNIIKRIGADKS 319
>gi|120435237|ref|YP_860923.1| filamentation induced by cAMP (Fic) family protein [Gramella
forsetii KT0803]
gi|117577387|emb|CAL65856.1| filamentation induced by cAMP (Fic) family protein [Gramella
forsetii KT0803]
Length = 316
Score = 67.4 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 95/336 (28%), Positives = 152/336 (45%), Gaps = 37/336 (11%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV 75
S L I +I ++ G +P KL + +I++ +S IEG T +I L+
Sbjct: 9 SNILKEITSISEKIGAINANYLNKPSP--KLRKENRIKTIHSSLKIEGNTLTEEQITALL 66
Query: 76 KEKTT--PKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPM--AGR 131
+ K PK +D +E+ + + I + P ++ L+ HK L MNN + AG+
Sbjct: 67 ENKRIIGPK-KDVKEVL---NAIEIYEHLENYKPSNEKSFLECHKHL---MNNLIEDAGK 119
Query: 132 IKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH 191
+ I H F P P+E L K + +N + + E+E LI VF +
Sbjct: 120 YRRQGVGIMKGSQVEH----FAP--PYENVPYLMK--DLFNYLKTSKEIE-LIKSCVFHY 170
Query: 192 DFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWH 251
+ IHPF DGNGRM RL TL+L + + +YI E I+K+++ YY AL +
Sbjct: 171 EMEFIHPFLDGNGRMGRLWQTLILIEK-YPIFEYIPFETLISKDQEKYYKALSDS----- 224
Query: 252 EGEEDVVPFIKYLLGTV---LAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQDI 308
+ + FI Y+LG + L DF +R + +L +LNK FT++D
Sbjct: 225 DKSGNSTAFIDYMLGVINKSLDELLDFNNRTFHEKERLEYF-----ISLNK-REFTRKDY 278
Query: 309 RELCPSLSISSIEGGLRKLVSAGELKREGSGKNICY 344
E+ +S ++ L+K V K+ G Y
Sbjct: 279 MEVFKDISGATASRDLKKGVELKLFKKIGEKNKTRY 314
>gi|109648334|ref|ZP_01372237.1| filamentation induced by cAMP protein Fic [Desulfitobacterium
hafniense DCB-2]
gi|109641424|gb|EAT50979.1| filamentation induced by cAMP protein Fic [Desulfitobacterium
hafniense DCB-2]
Length = 380
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 87/345 (25%), Positives = 144/345 (41%), Gaps = 46/345 (13%)
Query: 15 DSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQL 74
D T+ L+A + G E +Q P+ ++ V + + S+ IEG T I
Sbjct: 35 DEETIKLLAKANRSIGILEGMSRQIPD-IDLFVSMYVRKEALLSSQIEGTQVTLDDILDP 93
Query: 75 VKEKTTPKNRDEQEIAGYRDVLNIIHES------FDAIPLSQNYILQLHKILYSHM--NN 126
E+ T +N DV+N I S +PL + ++H+IL +
Sbjct: 94 NIEENTNQN--------VADVINYIKASHYGSARLAELPLCNRLLKEIHEILMQDVRGGE 145
Query: 127 PMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAI 186
G +S QN+I A S + + P P + EA+ + + N E++PLI I
Sbjct: 146 KSPGEFRSSQNWIGPAGS-TLRDARYIPPHPEDMLEAMSDLEKFIN---SEDELDPLIKI 201
Query: 187 PVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRA 246
+ + F IHPF DGNGR+ RLL L L + + + + +N+ YYD L
Sbjct: 202 ALIHYQFETIHPFLDGNGRIGRLLIALYLINQNLLSHETLYISYFLKRNRIEYYDRLTEV 261
Query: 247 QIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQ 306
+ + + ++K+ L LAAY D +E ++ L + G+ +K
Sbjct: 262 R-----SKGNFEQWLKFFL---LAAYESAQDAIDTIE-RILKLHYKNVEVVKNTGKASKT 312
Query: 307 --------------DIRE--LCPSLSISSIEGGLRKLVSAGELKR 335
DI++ L LS +++ + KLV G LK+
Sbjct: 313 VMKVFNYLESSPIIDIKKTSLALELSFNTVSNAVNKLVELGILKQ 357
>gi|78357537|ref|YP_388986.1| hypothetical protein Dde_2494 [Desulfovibrio desulfuricans G20]
gi|78219942|gb|ABB39291.1| conserved hypothetical protein [Desulfovibrio desulfuricans G20]
Length = 342
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 51 KIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQ 110
+I++ +AS AIE T ++ ++ K + +EI R+ D +
Sbjct: 48 RIRTIQASLAIENNTLTLEQVTAVIDGKRVLGH--PREIQEVRNAFATYEAMEDWDASVE 105
Query: 111 NYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEE 170
+L H++L M G + Y S E L P ++ + K+ +
Sbjct: 106 GDLLAAHELL-------MRGLVDETGRYRSGGVGIFRGEQLVHMAPP---ADRVPKLMAD 155
Query: 171 YNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEA 230
+ N PL+A +F ++F IHPF DGNGRM RL TL+L RN + Y+ +E
Sbjct: 156 LLDWLENTNEHPLVASCIFHYEFEFIHPFADGNGRMGRLWQTLIL-RNWKPLLAYLPVET 214
Query: 231 KIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRD 274
I ++ YY L A + + D PF++++LG + A R+
Sbjct: 215 VIRDRQEDYYRVLAVA-----DSQADATPFVEFMLGALRDAVRE 253
>gi|109898208|ref|YP_661463.1| filamentation induced by cAMP protein Fic [Pseudoalteromonas
atlantica T6c]
gi|109700489|gb|ABG40409.1| filamentation induced by cAMP protein Fic [Pseudoalteromonas
atlantica T6c]
Length = 454
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 64/244 (26%), Positives = 110/244 (45%), Gaps = 20/244 (8%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHES 102
L LVE I S++ +EG TT+ K L+K K P++ DE+ I G ++N E+
Sbjct: 126 LNDLVEDEAISSSQ----LEGAATTTEVAKDLLKRKRKPRSLDEKMIIGNFKMMNFAWEN 181
Query: 103 FDAIPLSQNYILQLHKILYSHMN--NPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFET 160
+ L+ ++I LH+I ++ N G + + N I+ P
Sbjct: 182 REK-DLTPDFIRDLHQIGVDGIDDDNYTPGVFRKTDDVKVVNAEGN---IVHQPPLAENL 237
Query: 161 SEALDKICEEYNRVIGNME----VEPLIAIPVFIHDFLCI-HPFNDGNGRMSRLLTTLLL 215
L K+C N+ + + PL+ + IH + HPF DGNGR++R L +
Sbjct: 238 KARLKKVCSWVNKCHHDTDNRDYFHPLVK-AIIIHFLIGFEHPFRDGNGRVARALFYWYM 296
Query: 216 YRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDF 275
++N F +YI++ + + KN + Y G++ + E D+ FI Y ++ A F
Sbjct: 297 FKNDFSAFRYITI-SLLLKNAPVQY---GKSYLYTESDEMDLTYFIDYQCSIIIRAINKF 352
Query: 276 ADRF 279
+
Sbjct: 353 KGSY 356
>gi|15677601|ref|NP_274759.1| hypothetical protein NMB1759 [Neisseria meningitidis MC58]
gi|7227012|gb|AAF42100.1| conserved hypothetical protein [Neisseria meningitidis MC58]
Length = 454
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 68/276 (24%), Positives = 116/276 (42%), Gaps = 15/276 (5%)
Query: 39 RPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNI 98
R E+ L++ ++ S +EG TT K ++K + PK +DE I ++
Sbjct: 121 RSEQNRFLLKSLIMEEAITSAQLEGAATTRKVAKDMLKSQRKPKTKDEIMIVNNYHLMKK 180
Query: 99 IHESFDAIPLSQNYILQLHKILYSHM--NNPMAGRIKSVQNYISAAYSDNHTEILFTPLA 156
E PLS IL LH+I S+ N G+ + A + N L+ P
Sbjct: 181 AVE-LKNTPLSVEMILDLHRIATSNAIENKAEPGQFRQDDEIFIADINGNS---LYQPPP 236
Query: 157 PFETSEALDKICEEYNRVIGNMEVEPLI--AIPVFIHDFLC--IHPFNDGNGRMSRLLTT 212
+ ++++C N +E P I + I FL IHPF DGNGR +R L
Sbjct: 237 HGQVHTLMEEVCAFANNTYDGVE-NPFIHPVVQAIILHFLIGYIHPFGDGNGRTARALFY 295
Query: 213 LLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAY 272
+ +NG+++ +YIS+ +++ KN Y ++ + + D+ FI Y + A
Sbjct: 296 WFMLKNGYWLFEYISI-SRLLKNAPAQY---AKSYLYAETDDLDLTYFIYYQCDIIKRAV 351
Query: 273 RDFADRFALVEIKLPALETVRRAALNKIGRFTKQDI 308
D + + + KIG+ ++ I
Sbjct: 352 ADLEHYISDKQKHQQEFKAAIAQYTEKIGKLNQRQI 387
>gi|126180058|ref|YP_001048023.1| filamentation induced by cAMP protein Fic [Methanoculleus
marisnigri JR1]
gi|125862852|gb|ABN58041.1| filamentation induced by cAMP protein Fic [Methanoculleus
marisnigri JR1]
Length = 426
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 69/244 (28%), Positives = 116/244 (47%), Gaps = 23/244 (9%)
Query: 36 LKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDV 95
L RP++ + + + ++ AS+ IEG T T K++++E+ P +DE+ I
Sbjct: 104 LDSRPQDRNRFITNSLMEEAIASSQIEGAAVTRTIAKKMLREQRKPATKDERMILNNYIT 163
Query: 96 LNIIHESFDAIPLSQNYILQLHK-ILYSHMNNPM-AGRIKSVQNYISAAYSDNHTEILFT 153
+ I + D L+ IL++HK I + +P GR + N I D +L T
Sbjct: 164 MKRITQVKDE-DLTPELILEIHKTITRDTLEDPNDEGRFRD-NNEIRVF--DMRGNVLHT 219
Query: 154 PLAPFETSEAL-DKICEEYNRVIGNMEVEPLIAIPVFIHDFLC--IHPFNDGNGRMSRLL 210
P F E L +++C N G + P+I + +H FL IHPFNDGNGR +R +
Sbjct: 220 P-PDFALIEGLIEELCAFANNDDGQF-IHPVIK-GIILH-FLIGYIHPFNDGNGRTARSI 275
Query: 211 TTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGW---HEGEEDVVPFIKYLLGT 267
+ R +++ +Y+++ I DA G+ ++ + E D+ FI+Y L
Sbjct: 276 FYWYMLRKDYWLFEYMAVSRAIK-------DAEGQYKLAYLYTESDENDLTYFIRYNLAA 328
Query: 268 VLAA 271
V A
Sbjct: 329 VKTA 332
>gi|118069059|ref|ZP_01537307.1| filamentation induced by cAMP protein Fic [Serratia proteamaculans
568]
gi|118016649|gb|EAV30573.1| filamentation induced by cAMP protein Fic [Serratia proteamaculans
568]
Length = 358
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 67/271 (24%), Positives = 116/271 (42%), Gaps = 28/271 (10%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ I + + S+ IE IVTTS ++ Q ++ + +E YR L + +A
Sbjct: 54 LINILPMLEAKDSSRIENIVTTSDQLFQYA-DRADGADPATKEALRYRTALYDGYTHLEA 112
Query: 106 IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYI----SAAYSDNHTEILFTPLAPFETS 161
PL N + + ++++VQ I D + ++TP
Sbjct: 113 YPLCTNTAITI------------CTKLRAVQTDIRKTPGTVLRDQNKNAVYTPPV---GE 157
Query: 162 EALDKICEEYNRVI-GNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
+ + + + R I G+ +++PL+ + + + F CIHPF DGNGR R+L L L + G
Sbjct: 158 DVIRNLLANWERFIHGDDDLDPLVKMAIAHYQFECIHPFPDGNGRTGRILNILYLIQTGL 217
Query: 221 YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFA 280
+ L I + +D YY L R E D +I ++L + R D+ +
Sbjct: 218 LSLPILYLSHFILERRDDYYMLLRRVT-----EEGDWESWILFMLEAIENTSRWTTDKIS 272
Query: 281 LVEIKLPALETVRRAALNKIGRFTKQDIREL 311
+V + R L KI +T + I+ L
Sbjct: 273 IVRALMAETTEYVREKLPKI--YTHELIQAL 301
>gi|77543210|gb|ABA87022.1| hypothetical protein [Vibrio cholerae]
Length = 333
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 90/342 (26%), Positives = 148/342 (43%), Gaps = 44/342 (12%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV 75
S L L+A I ++ G+ +L K I I T A IEG T +I +V
Sbjct: 11 SDILNLVAQISQQVGELNASQLNASPQLRKQNRIKTITGTLA---IEGNTLTEEQITAIV 67
Query: 76 KEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPL----SQNYILQLHKILYSHMNNPMAGR 131
+ K P +E+A + + ++DA+P + N +L H ++ S + AG
Sbjct: 68 EGK--PVLGSVRELAEVKGAI----AAYDALPTFTPSAINDLLTAHGLMLSDIL-VNAGE 120
Query: 132 IKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH 191
+S I A +H +AP + + + + + + + PLIA VF +
Sbjct: 121 FRSKGVGIHKAGVVHH-------VAP--PAHQVSGLMADLLQWLKQTKDHPLIASCVFHY 171
Query: 192 DFLCIHPFNDGNGRMSRLLTTLLLYR-NGFYVGKYISLEAKIAKNKDLYYDALGRAQIGW 250
+F IHPF DGNGRM RL TL+L + + ++ + LE+ I ++ YY AL +A
Sbjct: 172 EFEFIHPFADGNGRMGRLWQTLILSKWHPLFLS--LPLESVIKDHQQAYYHALEQA---- 225
Query: 251 HEGEEDVVPFIKYLLGTVLAAYRDFADRFALVE----------IKLPALETVRR--AALN 298
+ + D PFI ++L + A A ++ I + L+T A L
Sbjct: 226 -DNQADSTPFIHFMLSVIQQTLAQNASVNAPLKEGENAPVNTLINVTGLKTPEAILALLT 284
Query: 299 KIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
T+Q + + + + +I + KL G L R GS K
Sbjct: 285 STPELTRQQLADTL-NKDVRTIGRAISKLQKEGRLTRVGSDK 325
>gi|152972069|ref|YP_001337215.1| hypothetical protein KPN_03553 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150956918|gb|ABR78948.1| hypothetical protein KPN_03553 [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 333
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 23/176 (13%)
Query: 179 EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLL--YRNGFYVGKYISLEAKIAKNK 236
E+ PLIA VF ++F IHPF DGNGRM RL TL+L +R ++ +E I +
Sbjct: 160 ELHPLIASSVFHYEFEFIHPFADGNGRMGRLWQTLILSQWRQEL---AWLPVETLIHHQQ 216
Query: 237 DLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALV------------EI 284
+ YYD LG + D F+ ++L +LAA ++ + +V ++
Sbjct: 217 ERYYDILGAC-----DKTSDCTLFVTWMLQNILAALKEGLETSFIVSEEMSEEMSEEIDV 271
Query: 285 KLPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
KL E L + T + + E+ +S ++E L+ L + G L R G+ K
Sbjct: 272 KLAPPENAILRLLTEKPELTARALAEIL-GISARTVERHLQGLQAKGRLIRIGAKK 326
>gi|46156226|ref|ZP_00133220.2| COG3177: Uncharacterized conserved protein [Haemophilus somnus
2336]
Length = 249
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 42 ELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQEIAGYRDVLNI 98
E+++L E I+S+ SNAIEG T ++KE T R+ +I G++D N
Sbjct: 25 EVQRLREEFIIESSYNSNAIEGNTITLRETVLILKEGMTIAEKPLREHLDIIGFKDAFNY 84
Query: 99 IHESF-DAIPLSQNYILQLHKILYSHMNNPMA-GRIKSVQNYISAAYSDNHTEILFTPLA 156
I+E + PLS+ I +H ++ MNN G + + I A ++ P A
Sbjct: 85 IYELVANNEPLSERTIKDIHSLVL--MNNAEGRGVYRKIPVRILGAENE--------PTA 134
Query: 157 PFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLY 216
P+ +E + + E+Y + + + P+ AI F IHPF DGNGR RLL L
Sbjct: 135 PYLIAEEMQLLIEKYQQKL--TALHPIEAISWLHLAFESIHPFIDGNGRTGRLLINFELL 192
Query: 217 RNGF 220
++G+
Sbjct: 193 KHGY 196
>gi|113461405|ref|YP_719474.1| hypothetical protein HS_1262 [Haemophilus somnus 129PT]
gi|112823448|gb|ABI25537.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 249
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 57/184 (30%), Positives = 90/184 (48%), Gaps = 17/184 (9%)
Query: 42 ELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQEIAGYRDVLNI 98
E+++L E I+S+ SNAIEG T ++KE T R+ +I G++D N
Sbjct: 25 EVKRLREEFIIESSYNSNAIEGNTITLRETVLILKEGMTIAEKPLREHLDIIGFKDAFNY 84
Query: 99 IHESF-DAIPLSQNYILQLHKILYSHMNNPMA-GRIKSVQNYISAAYSDNHTEILFTPLA 156
I+E + PLS+ I +H ++ MNN G + + I A ++ P A
Sbjct: 85 IYELVANNEPLSERTIKDIHSLVL--MNNAEGRGVYRKIPVRILGAENE--------PTA 134
Query: 157 PFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLY 216
P+ +E + + E+Y + + + P+ AI F IHPF DGNGR RLL L
Sbjct: 135 PYLIAEEMQSLIEKYQQKL--TALHPIEAISWLHLAFESIHPFIDGNGRTGRLLINFELL 192
Query: 217 RNGF 220
++G+
Sbjct: 193 KHGY 196
>gi|115379688|ref|ZP_01466767.1| Fic family protein [Stigmatella aurantiaca DW4/3-1]
gi|115363302|gb|EAU62458.1| Fic family protein [Stigmatella aurantiaca DW4/3-1]
Length = 392
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 53 QSTEASNAIEGIVTTSTRIKQLVKEKTTPK-NRDEQEIAGYRDVLNIIHESFDAIPLSQN 111
Q S+ IEG +T + + + PK ++D +E+ Y +N + A+PLS
Sbjct: 67 QEAVLSSQIEGTQSTLEDVLEYEMDAQGPKRSKDAEEVVNYVRAMNHGLQRLSALPLSLR 126
Query: 112 YILQLHKILY----SHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKI 167
+ ++H L NP G ++ QN+I + F P P + ALD +
Sbjct: 127 LLREIHGRLMHGGRGSERNP--GEFRTSQNWIGPQ-GCSLVSATFVPPPPHDMVTALDNL 183
Query: 168 CEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYIS 227
E++ GN+ V LI + F IHPF DGNGR+ RLL TLLL +
Sbjct: 184 -EKFLHEPGNLPV--LIQCGLAHAQFETIHPFLDGNGRVGRLLITLLLCERRILERPLLY 240
Query: 228 LEAKIAKNKDLYYDAL 243
L + ++ YYD L
Sbjct: 241 LSVFLKAHRQEYYDRL 256
>gi|89896078|ref|YP_519565.1| hypothetical protein DSY3332 [Desulfitobacterium hafniense Y51]
gi|89335526|dbj|BAE85121.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 383
Score = 65.9 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 86/345 (24%), Positives = 144/345 (41%), Gaps = 46/345 (13%)
Query: 15 DSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQL 74
D T+ L+A + G E +Q P+ ++ V + + S+ IEG T I
Sbjct: 38 DEETIKLLAKANRSIGILEGMSRQIPD-IDLFVSMYVRKEALLSSQIEGTQATLDDILDP 96
Query: 75 VKEKTTPKNRDEQEIAGYRDVLNIIHES------FDAIPLSQNYILQLHKILYSHM--NN 126
E+ T +N DV+N I S +PL + ++H+IL +
Sbjct: 97 NIEENTNQN--------VADVINYIKASQYGSARLAELPLCNRLLKEIHEILMQDVRGGE 148
Query: 127 PMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAI 186
G +S QN+I A S + + P P + EA+ + + N E++PLI I
Sbjct: 149 KSPGEFRSSQNWIGPAGS-TLRDARYIPPHPEDMLEAMSDLEKFIN---SEDELDPLIKI 204
Query: 187 PVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRA 246
+ + F IHPF DGNGR+ RLL L L + + + + +N+ YYD L
Sbjct: 205 ALIHYQFETIHPFLDGNGRIGRLLIALYLINQNLLSHETLYISYFLKRNRIEYYDRLTEV 264
Query: 247 QIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQ 306
+ + + ++K+ L LAAY D +E ++ L + G+ +K
Sbjct: 265 R-----SKGNFEQWLKFFL---LAAYESAQDAIDTIE-RILKLHYKNVEVVKNTGKASKT 315
Query: 307 --------------DIRELCPSLSIS--SIEGGLRKLVSAGELKR 335
DI++ +L +S ++ + KLV G LK+
Sbjct: 316 VMKVFNYLESSPIIDIKKTSVALELSFNTVSNAVNKLVELGILKQ 360
>gi|89076596|ref|ZP_01162903.1| Filamentation induced by cAMP protein Fic [Photobacterium sp.
SKA34]
gi|89047748|gb|EAR53348.1| Filamentation induced by cAMP protein Fic [Photobacterium sp.
SKA34]
Length = 456
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 75/306 (24%), Positives = 137/306 (44%), Gaps = 27/306 (8%)
Query: 57 ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
+S+ +EG TT+ K+++++K P+ E+ IAG D++ S S I +L
Sbjct: 159 SSSQLEGAATTTILAKEMLRKKRKPRTDGERMIAGNFDLMQAAW-SLKGNSFSIRLIKEL 217
Query: 117 HKILYSHMNNP--MAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
HK ++ +G ++ + I+ SD+ EI+ P L ++ N
Sbjct: 218 HKAGTQTLDQGKYTSGTFRTTDD-IAVVNSDD--EIVHQPPKHDVIDRLLSRVVNWLNAT 274
Query: 175 IGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAK 234
+ ++ P+I +HPF DGNGR++R L +++ G+ +YI++ A + K
Sbjct: 275 --DDDIHPVIKAITLHFVIGYVHPFRDGNGRVARALFYWYMFKCGYTGFRYIAISA-LLK 331
Query: 235 NKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDF-------ADRFALVEIKLP 287
N + Y G + + D+ FIKY L + A +F A R +E +
Sbjct: 332 NAPIQY---GVSYLDCEHDNLDLTYFIKYQLKIISRAITEFVCVYERAASRMRELEDRYS 388
Query: 288 ALETVRRAALNKIG---RFTKQDI---RELCPSLSIS--SIEGGLRKLVSAGELKREGSG 339
LE + R + + R+ K+ RE L +S +++ L +V++ L E G
Sbjct: 389 GLEDIERKIIGFVAGEPRYRKKPTITAREAESLLGVSFNTVKQKLDDMVTSEILGCEKIG 448
Query: 340 KNICYY 345
K+ Y+
Sbjct: 449 KSTEYF 454
>gi|21229217|ref|NP_635139.1| hypothetical protein MM_3115 [Methanosarcina mazei Go1]
gi|20907788|gb|AAM32811.1| hypothetical protein MM_3115 [Methanosarcina mazei Go1]
Length = 436
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 14/224 (6%)
Query: 57 ASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAG-YRDVLNIIHESFDAIPLSQNYILQ 115
AS+ IEG TT K++++E PK++DE+ I Y V +I++ +AI + IL+
Sbjct: 131 ASSQIEGAATTREIAKRMLQEDRKPKSKDEKMIVNNYDTVKHIMNLKKEAI--TPEKILE 188
Query: 116 LHKILYS-HMNNP-MAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNR 173
+H+++ + + P G + A YS + T +L P+ + E ++++C+ +
Sbjct: 189 IHRMITNGTLEKPEYEGSFRETNEI--AVYSQDGT-LLHRPVEYTKVPELVNQLCD-FAS 244
Query: 174 VIGNMEVEPLIAIPVFIHDFLC--IHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAK 231
+ P+I + IH FL IHPFNDGNGR +R L L +N +++ +Y+++
Sbjct: 245 SKDKEFIHPVIK-GIIIH-FLVGYIHPFNDGNGRTARALFYWYLLKNDYWLFEYMAVSRV 302
Query: 232 IAKNKDLYYDALGRAQIGWHEGEE-DVVPFIKYLLGTVLAAYRD 274
I +K Y +A + + D+ FIKY L + A D
Sbjct: 303 INSSKKQYRNAYLYTESDRTPNDSGDLTYFIKYNLDCIKKALDD 346
>gi|149371310|ref|ZP_01890796.1| Cell filamentation protein Fic [unidentified eubacterium SCB49]
gi|149355448|gb|EDM44007.1| Cell filamentation protein Fic [unidentified eubacterium SCB49]
Length = 317
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 88/336 (26%), Positives = 147/336 (43%), Gaps = 30/336 (8%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV 75
S L LI +I ++ G+ L +P KL + +I++ +S IEG T +I L+
Sbjct: 9 SSILKLITSISEKIGEVNANLLNKPSP--KLRKQNRIKTIHSSLKIEGNTLTEEQITALL 66
Query: 76 KEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSV 135
+ K I +DVL +++ L + L L +H N M G ++S
Sbjct: 67 ENKRV--------IGPKKDVLEVLNAIEIYENLEEYNPNNLKSFLKAH-QNLMKGLVESP 117
Query: 136 QNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLC 195
Y + + + PF L K EY + +E LI VF ++
Sbjct: 118 GKYRNQSVGIVKGSKVEHLAPPFGNVPYLMKDLFEYLKKSDEIE---LIKSCVFHYEMEF 174
Query: 196 IHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEE 255
IHPF DGNGRM RL TL+L + + +++ E I+K++ YY +L + +
Sbjct: 175 IHPFLDGNGRMGRLWQTLILMEK-YPIFEFLPFETLISKDQGNYYKSLAES-----DKSG 228
Query: 256 DVVPFIKYLLGTV---LAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQDIRELC 312
FI+Y+L + ++ DF +R + +L +LN FT++ ++
Sbjct: 229 KSTKFIEYMLNVIDISISELLDFNNRTLNQKDRLEYF-----VSLNST-EFTRKGYMDIF 282
Query: 313 PSLSISSIEGGLRKLVSAGELKREGSGKNICYYRLK 348
++S ++ L+K G K+ G KN YRLK
Sbjct: 283 KNISSATASRDLKKGAELGLFKKIGE-KNKTIYRLK 317
>gi|153007961|ref|YP_001369176.1| filamentation induced by cAMP protein Fic [Ochrobactrum anthropi
ATCC 49188]
gi|151559849|gb|ABS13347.1| filamentation induced by cAMP protein Fic [Ochrobactrum anthropi
ATCC 49188]
Length = 393
Score = 65.9 bits (159), Expect = 4e-09, Method: Composition-based stats.
Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 12/191 (6%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDE-QEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
S+ IEG +T + + + E + D+ +E++ Y D + E + +PLS I ++
Sbjct: 81 SSQIEGTQSTLSDLLRFETEAQVGQPIDDIREVSNYVDAMMYGLERLEELPLSLRLIREM 140
Query: 117 HKILYSH----MNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYN 172
H+ L NP G + QN+I + N LF P P E + LD + E +
Sbjct: 141 HERLLQSGRGGTKNP--GEFRRSQNWIGGSRPAN---ALFVPPPPTEMDDCLDAL-ERFM 194
Query: 173 RVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKI 232
G+ + LI + F IHPF DGNGR+ RLL TL L NG + L +
Sbjct: 195 HEDGS-RLPALIKAGLLHVQFETIHPFLDGNGRIGRLLVTLYLCVNGVLRKPLLYLSLYL 253
Query: 233 AKNKDLYYDAL 243
++ YY L
Sbjct: 254 KTHRADYYRLL 264
>gi|126663814|ref|ZP_01734809.1| Huntingtin interacting protein E-like protein [Flavobacteria
bacterium BAL38]
gi|126624078|gb|EAZ94771.1| Huntingtin interacting protein E-like protein [Flavobacteria
bacterium BAL38]
Length = 320
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 22/212 (10%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQEIAGYRDVLNII 99
+ K+ E I+ T SN+IEG + + +++E T K R+ E + +N +
Sbjct: 37 ISKIKESLSIEWTYNSNSIEGNTLSLRETQMVLQEGITVKGKSLREHFEAKNHEHAINYL 96
Query: 100 HESF-DAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPF 158
++ D L +L LH + + + AGRI++ I+ A F P
Sbjct: 97 YQIINDDYVLRSIDVLSLHGSVLRTIEDDFAGRIRNAGVRITGAN--------FMPPNAN 148
Query: 159 ETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRN 218
+ S+ LD++ N +++ + +F H + IHPF DGNGR RL LLL R
Sbjct: 149 KVSDLLDELILFVNE--NPLQLNDIELATIFHHKLVWIHPFFDGNGRTVRLAMNLLLMRK 206
Query: 219 GFYVGKYISLEAKIAKN-KDLYYDALGRAQIG 249
GF A I KN + YYDAL +A G
Sbjct: 207 GF-------PPAIILKNDRKKYYDALNQANNG 231
>gi|22538253|ref|NP_689104.1| hypothetical protein SAG2119 [Streptococcus agalactiae 2603V/R]
gi|22535166|gb|AAN00977.1|AE014287_17 conserved domain protein [Streptococcus agalactiae 2603V/R]
Length = 373
Score = 65.5 bits (158), Expect = 5e-09, Method: Composition-based stats.
Identities = 83/287 (28%), Positives = 125/287 (43%), Gaps = 42/287 (14%)
Query: 3 PFNYSEIKNQKWDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEA--SNA 60
PF+Y+ I D + L G E +L+ + ++ I+ + S EA S+
Sbjct: 18 PFDYTSIYT---DPQIIKLTTRANIAIGTYEGFLESI---INPMLLISPLLSQEAVLSSK 71
Query: 61 IEGIVTTSTRIKQLVKEKTTPK---NRDE-QEIAGYRDVLNIIHESFDAI--------PL 108
+EG T +K L+ + K RDE EI YR L E+ I PL
Sbjct: 72 LEG---THATLKDLLNYEAGNKVDIERDELHEIINYRKALFYALENISTINNIDSKGLPL 128
Query: 109 SQNYILQLHKILYSHM----NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEAL 164
S I ++HKIL ++ NP G K QNYI + S I +TP+ +T E +
Sbjct: 129 SNRIIKEMHKILLDNVRGSSKNP--GNFKRSQNYIGSVSS-----ISYTPVPAEKTPEYM 181
Query: 165 DKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGK 224
+ E+Y I +++ L+ + F IHPF DGNGR+ RLL L LY
Sbjct: 182 SNL-EQY---IHYDDLDLLVQSAIIHAQFEMIHPFEDGNGRIGRLLIPLFLYYQELLSYP 237
Query: 225 YISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAA 271
+ + +++ LY L + I +D F YL G +L+A
Sbjct: 238 TFYMSSYFERDRSLYISHL--SNISKDNNWKDW--FEYYLEGVILSA 280
>gi|86142005|ref|ZP_01060529.1| hypothetical protein MED217_02700 [Flavobacterium sp. MED217]
gi|85831568|gb|EAQ50024.1| hypothetical protein MED217_02700 [Leeuwenhoekiella blandensis
MED217]
Length = 357
Score = 65.1 bits (157), Expect = 7e-09, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 14/211 (6%)
Query: 36 LKQRPEELEK---LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGY 92
LK R +E+ LV +Q + S+ IE IVTT + + + + +E+ Y
Sbjct: 39 LKGRADEIPNQSMLVNAITLQEAKDSSEIENIVTTQDTLYKAFSSNISTTDAQTKEVLRY 98
Query: 93 RDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILF 152
R L + PLS N +Q+ + + NN ++N + N I +
Sbjct: 99 RQALWEGYTDLSKRPLSTNSFIQIVQTIKE--NN------SGIRNAPGTKITSNGKTI-Y 149
Query: 153 TPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTT 212
TP +L K E+Y + + +V+ LI + + + F IHPF DGNGR R++
Sbjct: 150 TPPEGETVIRSLLKNLEDY--IHADDDVDLLIKLAIMHYQFEAIHPFFDGNGRTGRVINM 207
Query: 213 LLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
L + NG + L I ++K+ YY L
Sbjct: 208 LFMVENGLLDTPILYLSKYIIEHKNAYYTNL 238
>gi|17544594|ref|NP_502036.1| ZK593.8 [Caenorhabditis elegans]
gi|15718300|emb|CAA93429.2| Hypothetical protein ZK593.8 [Caenorhabditis elegans]
Length = 508
Score = 64.7 bits (156), Expect = 9e-09, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 26/184 (14%)
Query: 84 RDEQEIAGYRDVLNIIHESF---DAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYIS 140
R+ E+ G L ++ S + +S + IL++H+ + + + AGRI++ Q Y+
Sbjct: 299 REHNEVIGMDAALRFLNCSLLSKEHDEISIDDILEMHRRVLGNADPVEAGRIRTTQVYVG 358
Query: 141 AAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFN 200
FTP++P E L I + N + ++P+ + + + +HPF
Sbjct: 359 R----------FTPVSPEYVMEQLKDIVDWLNDE-STLTIDPIERAAIAHYKLVLVHPFT 407
Query: 201 DGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPF 260
DGNGR +RLL L++ R+GF + +E + YY +L A +G D+ PF
Sbjct: 408 DGNGRTARLLLNLIMMRSGF-PPVILPVETRAE-----YYASLHVANLG------DLRPF 455
Query: 261 IKYL 264
++Y+
Sbjct: 456 VRYV 459
>gi|134298684|ref|YP_001112180.1| filamentation induced by cAMP protein Fic [Desulfotomaculum
reducens MI-1]
gi|134051384|gb|ABO49355.1| filamentation induced by cAMP protein Fic [Desulfotomaculum
reducens MI-1]
Length = 256
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 16/190 (8%)
Query: 40 PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR---DEQEIAGYRDVL 96
PE + + + + T +NAIEG T ++E T K R + E+ + + +
Sbjct: 20 PELMATIAQKFREDWTYNTNAIEGNTMTLQETAFFLREGLTVKGRTLKEHLEMINHAEAV 79
Query: 97 NIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYS--DNH----TEI 150
+ + ++ L++ I + H +L+S + +AG + I AY DNH + I
Sbjct: 80 DFLKDAIKHRDLTEGLIKEFHAMLFSGIKT-LAGGVP----VIPGAYKTKDNHVLTASGI 134
Query: 151 LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLL 210
+ + S ++ + YN +++ P+ +F H F+ IHPF DGNGR+SRL
Sbjct: 135 IHHYAPATQVSAEMENLINWYND--SKLKMHPIELAALFHHRFVAIHPFPDGNGRVSRLC 192
Query: 211 TTLLLYRNGF 220
+L +NG+
Sbjct: 193 MNYILMKNGY 202
>gi|68233495|ref|ZP_00572614.1| Filamentation induced by cAMP protein Fic [Frankia sp. EAN1pec]
gi|68198895|gb|EAN13148.1| Filamentation induced by cAMP protein Fic [Frankia sp. EAN1pec]
Length = 378
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 80/327 (24%), Positives = 135/327 (41%), Gaps = 45/327 (13%)
Query: 40 PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDE--QEIAGYRDVLN 97
P+ + L + + ASN+IEG ++ ++ L+ + + DE +E Y+ ++
Sbjct: 35 PKWTDGLRKFLTADAVAASNSIEGFKVSTIDVQDLMTGERDVEVSDENREETLAYQRMMT 94
Query: 98 IIHESFDA--IPLSQNYILQLHKILYSHMNN--PMAGRIKSVQNYISAAYSDNHTEILFT 153
I DA S+ + LH +L H + AG+ + Y++ A
Sbjct: 95 YIQTLHDAEDFSYSKGLLNALHWMLQGHRHTVRKPAGQWRRGPVYVTDARD--------- 145
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEV----EPLIAIPVFIHDFLCIHPFNDGNGRMSRL 209
P T+ + + N +IG + PL+ + + IHP+ DGNGRMSR
Sbjct: 146 PSIAAYTAPGAEGVPALMNELIGWLNAADGAHPLVRAAMAHLHLVSIHPWADGNGRMSRS 205
Query: 210 LTTLLLYRNGFYVGKYISLEAKIAK--NKDLYYDALGRAQIGWHEGEEDVVPFIKYLL-- 265
L TL++ R G ++ S+EA + + N YY L + ++DV +I++ L
Sbjct: 206 LQTLMIAREGVLAPEFSSVEAWLGRPGNTWEYYRELSDRGATYLP-DQDVSSWIRFNLTA 264
Query: 266 ---------------GTVLAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQDIRE 310
G V A +F + L E + AL V A + R+ E
Sbjct: 265 YHQQAQTVQGRLDRSGRVWGALAEFTESTGLDERVVSALHDVAMAGRVRRSRY------E 318
Query: 311 LCPSLSISSIEGGLRKLVSAGELKREG 337
SLS+ + LR L +A L+ G
Sbjct: 319 QAESLSLQQAQRDLRDLTTAQLLEPVG 345
>gi|76258791|ref|ZP_00766444.1| Filamentation induced by cAMP protein Fic [Chloroflexus aurantiacus
J-10-fl]
gi|76166173|gb|EAO60300.1| Filamentation induced by cAMP protein Fic [Chloroflexus aurantiacus
J-10-fl]
Length = 392
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 74/273 (27%), Positives = 117/273 (42%), Gaps = 27/273 (9%)
Query: 81 PKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMA--GRIKSVQNY 138
P D +E+ Y + L + + +P+S + +LH+ L + + A G + QN+
Sbjct: 110 PPEADIREVLNYVNALEYGLKRLETLPVSLRLMRELHERLLAGVRGERATPGEFRRTQNW 169
Query: 139 ISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIH 197
I + + P P + E LD + E+Y + + +V P + F+H F IH
Sbjct: 170 IGSPGCTLNEATFVPPPVP-QMYECLDAL-EKY---LHSQDVYPPLVRLAFVHYQFEAIH 224
Query: 198 PFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYD-ALGRAQIGWHEGEED 256
PF DGNGR+ RLL +LLL + + L A + + + YYD LG ++ G D
Sbjct: 225 PFVDGNGRIGRLLISLLLVQWQLLPLPLLYLSAYLYRYRQDYYDLLLGVSERG------D 278
Query: 257 VVPFIKYLLGTVLAAYRDFADRF------------ALVEIKLPALETVRRAALNKIGRFT 304
++ + L V RD R L + + AL AL T
Sbjct: 279 WRTWLLFFLRGVAGQARDAVQRTRELQDLREDWHRRLSQARTSALTLRLVDALFVSPILT 338
Query: 305 KQDIRELCPSLSISSIEGGLRKLVSAGELKREG 337
++ L S S + KLVSAG L++EG
Sbjct: 339 IPQVQRLLQVGSYHSARKTVEKLVSAGILQQEG 371
>gi|42453665|ref|ZP_00153572.1| COG3177: Uncharacterized conserved protein [Rickettsia rickettsii]
Length = 322
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 78/312 (25%), Positives = 150/312 (48%), Gaps = 37/312 (11%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFD 104
KL + +I++ +S AIEG + +I ++ +K E++I ++ + + +
Sbjct: 38 KLRKNNQIKTIYSSLAIEGNSLSVEQITDIINDKRVLA--PEKDIVEVKNAIKLYNNLTI 95
Query: 105 AIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISA-AYSDNHTEILFTPLAPFETSEA 163
P +L+ HKIL M G ++ + A TEI++ AP T+
Sbjct: 96 FNPFKIESLLKAHKIL-------MQGLVEDNGKWRKGNAAIFKGTEIIY--FAP--TAHR 144
Query: 164 LDKICEE-YNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV 222
+ + ++ + + + ++ ++ +F ++F IHPF+DGNGR+ RL LLL + +
Sbjct: 145 VSLLMQDLFEFIAQDKQISGIVKACIFHYEFEFIHPFSDGNGRIGRLWQQLLLMQAN-KI 203
Query: 223 GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALV 282
+YIS+E+ I N+ YY+ L + GE + FI+++L ++AA R +++
Sbjct: 204 FEYISVESLIRNNQSEYYNVLSKCD---KLGESTL--FIEFMLDKIVAALRLYSNNITY- 257
Query: 283 EIKLPALETVRRAALNKIGR-FTKQDIRELCPSLSISSIEGGL------RKLVSAGELKR 335
E P L + A +N I + F+++D + S+S ++ L + L+S G+
Sbjct: 258 EANTP-LSRMAFAKVNLIDQWFSRKDYITVHKSISTATASRDLLYGLERKLLISKGD--- 313
Query: 336 EGSGKNICYYRL 347
KN YY+
Sbjct: 314 ----KNQTYYKF 321
>gi|116626052|ref|YP_828208.1| filamentation induced by cAMP protein Fic [Solibacter usitatus
Ellin6076]
gi|116229214|gb|ABJ87923.1| filamentation induced by cAMP protein Fic [Solibacter usitatus
Ellin6076]
Length = 371
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 180 VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLY 239
V+P++ + F+ IHPF+DGNGR++R + L L R+ ++ S+ A+I + ++ Y
Sbjct: 188 VDPVLKAALAHLWFVTIHPFDDGNGRIARAIADLALARSENTPQRFYSMSAQIRQERNAY 247
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLG 266
YD L R Q +G DV P++++ LG
Sbjct: 248 YDILERTQ----QGSLDVTPWMQWFLG 270
>gi|13472455|ref|NP_104022.1| hypothetical protein mlr2757 [Mesorhizobium loti MAFF303099]
gi|14023201|dbj|BAB49808.1| mlr2757 [Mesorhizobium loti MAFF303099]
Length = 263
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 20/191 (10%)
Query: 37 KQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR---DEQEIAGYR 93
+ RP L+ L +I T SNAIEG T+ ++++ T + D E +
Sbjct: 20 RGRPGALDGLEHSQRIDITYTSNAIEGNTLTAGETALVLEKGITISGKPLKDHLEAVDHA 79
Query: 94 DVLNIIHE--SFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYIS--AAYSDNHTE 149
LN + E S + P+ + I LH ++ ++ +AGR Y++ A D
Sbjct: 80 RALNWVLEIASQSSTPIVEADIRNLHHLVVANTKPEIAGRYADSARYVNTDAGVYD---- 135
Query: 150 ILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRL 209
F P P + +++ C+ +G P A + IHPFNDGNGR +RL
Sbjct: 136 --FPP--PMDVPALMERFCQW----LGTARNTPQTAFEAH-RRLVDIHPFNDGNGRTARL 186
Query: 210 LTTLLLYRNGF 220
L L+L R G+
Sbjct: 187 LMNLVLARAGY 197
>gi|149914801|ref|ZP_01903331.1| hypothetical protein RAZWK3B_14449 [Roseobacter sp. AzwK-3b]
gi|149811594|gb|EDM71429.1| hypothetical protein RAZWK3B_14449 [Roseobacter sp. AzwK-3b]
Length = 377
Score = 63.5 bits (153), Expect = 2e-08, Method: Composition-based stats.
Identities = 75/309 (24%), Positives = 130/309 (42%), Gaps = 45/309 (14%)
Query: 53 QSTEASNAIEGIVTTSTRIKQLVKEKTT-------PKNRDEQEIAGYRDVLNIIHESF-D 104
Q S+ +EG ++T + +L E+ + + D+ E Y L ++ +
Sbjct: 63 QDAVTSSRMEGTISTIEDLYRLEAEEDSGSTDLYRDAHHDDIETYLYSRALRSAQDALAE 122
Query: 105 AIPLSQNYILQLHKILYSHMNNPMA--GRIKSVQNYISAAYSDNHTEILFTPLAPFETSE 162
+PL ++ I H+ L S G K QNYI + +I + P+AP +
Sbjct: 123 GMPLGEHLIRSAHQQLLSAGRGATKRPGSYKIDQNYIG---DERRGKIYYVPIAPEQLEP 179
Query: 163 ALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV 222
A+ + + I E PLI + +F +HPF DGNGR+ R+L TL+L+R G
Sbjct: 180 AMAALVQ----FINTSEARPLIRTALAHVEFEALHPFEDGNGRIGRMLITLMLWRLGVLS 235
Query: 223 GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL--------------GTV 268
+ +KD Y + + RA E+D ++ + L +
Sbjct: 236 QPNFFVSGYFETHKDEYIERM-RAV----SAEKDWTGWVIFFLQAMHEQATVNIQTADAI 290
Query: 269 LAAYRDFADRFALV---EIKLPALETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLR 325
+ + + +RF V + AL+ V + + + RF + R P+ S S+ R
Sbjct: 291 FSLHSEMRERFREVLNSQFHDQALDFVFASPVFRNDRFVE---RSGIPATSARSLS---R 344
Query: 326 KLVSAGELK 334
+LV AG L+
Sbjct: 345 RLVEAGLLR 353
>gi|115421461|emb|CAJ47967.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 357
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 75/272 (27%), Positives = 121/272 (44%), Gaps = 33/272 (12%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTT-STRIKQLVKEKTTPKNRDE-QEIAGYRDVLNIIHES 102
+L I I + S IEG TT S ++ LV + D+ +EI ++ I
Sbjct: 16 QLKRIFHILESLGSARIEGNHTTLSDYVEHLVDGDHNNRPPDQLREIDNIERAMDFIDGG 75
Query: 103 F-DAIPLSQNYILQLHKILYSHMN-----NPMAGRIKSVQNYISAAYSDNHTEILFTPLA 156
+ PLS+ +I +LH + + + P A R+ V S + ++ L P +
Sbjct: 76 VKEGEPLSEQFIRELHHLTVNDLEREGDRTPGAYRLTQV--------SISKSKHLPPPAS 127
Query: 157 PFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLY 216
+ + ++ + NR N L+ + + H F IHPF++GNGR+ RLLT +L
Sbjct: 128 --RVAMYMQELVDFVNR--PNAPKYDLMKVALAHHRFGWIHPFSNGNGRVVRLLTYAMLL 183
Query: 217 RNGFYVG---KYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYR 273
+ GF V + ++ A N+D YY LG A G EG E + Y+LG +LA +
Sbjct: 184 KYGFNVSAGNRILNPTAVFCNNRDKYYQMLGVADQGTSEGLEH---WCCYVLGGILAELK 240
Query: 274 DFADRFALVEIKLPAL------ETVRRAALNK 299
DR + E P + + R +NK
Sbjct: 241 K-VDRLSSYEYLRPKILRPAIRHAIERGHINK 271
>gi|156357557|ref|XP_001624283.1| predicted protein [Nematostella vectensis]
gi|156211050|gb|EDO32183.1| predicted protein [Nematostella vectensis]
Length = 427
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 59/234 (25%), Positives = 111/234 (47%), Gaps = 42/234 (17%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR---DEQEIAGYRDVLNII 99
+++ ++ A Q SNAIEG T + + +V+ K + + E+ G + L +
Sbjct: 185 MKRAIKEAYFQHIYHSNAIEGNTMTLSMTRAIVETKMAVPGKSILEHNEVLGLDEALKYV 244
Query: 100 HESF--DAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAP 157
+ + + ++ + I+++H+ + H + AGR +S Q ++S +H P AP
Sbjct: 245 NSTLIQKSESITIDDIIEIHRRVLGHAHPLEAGRYRSTQVFVS-----DHV-----PPAP 294
Query: 158 FETSEALDKICEEYNRVIGNMEVEPLIAIPVFI-----HDFLCIHPFNDGNGRMSRLLTT 212
E L+K +N + + +P I P+ + + IHPF DGNGR +RLL
Sbjct: 295 ----EDLEKQMNAFNDWL--LSKDPEILHPIEFAALSHYKLVYIHPFTDGNGRTARLLMN 348
Query: 213 LLLYRNGF--YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYL 264
+L R GF + ++ +++ YY+ L +A G D+ PFI+++
Sbjct: 349 AILMRAGFPPVIIRF--------QDRHDYYEYLNQANHG------DIRPFIRFV 388
>gi|116050721|ref|YP_790458.1| hypothetical protein PA14_28800 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115585942|gb|ABJ11957.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
Length = 331
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 55/93 (59%), Gaps = 6/93 (6%)
Query: 179 EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDL 238
E+ PLIA VF ++F IHPF DGNGRM RL TL+L + V Y+ +E+ I + +D
Sbjct: 161 ELHPLIASCVFHYEFEFIHPFADGNGRMGRLWQTLILSQ-WRAVLAYLPVESVIREQQDA 219
Query: 239 YYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAA 271
YY+AL + + + PF++++L + A
Sbjct: 220 YYEALAVS-----DKAAEAAPFVEFMLAALRQA 247
>gi|87198398|ref|YP_495655.1| filamentation induced by cAMP protein Fic [Novosphingobium
aromaticivorans DSM 12444]
gi|87134079|gb|ABD24821.1| filamentation induced by cAMP protein Fic [Novosphingobium
aromaticivorans DSM 12444]
Length = 371
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 28/201 (13%)
Query: 58 SNAIEGIVTTSTRIKQL-----VKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNY 112
S+ IEG T + + + +++TPK D +E+ YR L +PLSQ
Sbjct: 59 SSKIEGTQVTLGEVLEFEAQGHLFDESTPKKADAREVLNYRAALREADSLMAELPLSQRL 118
Query: 113 ILQLHKILYSHMN--NPMAGRIKSVQNYISAAYSDNHT--EILFTPLAPFETSEALDKIC 168
I H++L + + G + + N+I D T + F P ++ ++
Sbjct: 119 IKATHRVLMDGVRGRHKDPGEYRRIPNWIGP---DGCTIEQARFVP----PGADRIEAAM 171
Query: 169 EEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNG------FYV 222
+ I + L+ + + +F IHPF DGNGR+ RL+ L LY +G FY+
Sbjct: 172 VGWEAYIHADAPDRLVQLAIVHAEFESIHPFLDGNGRIGRLIIPLFLYAHGLLSRPNFYL 231
Query: 223 GKYISLEAKIAKNKDLYYDAL 243
+Y LEA N+D YYD +
Sbjct: 232 SEY--LEA----NRDEYYDRM 246
>gi|39593671|emb|CAE61963.1| Hypothetical protein CBG05963 [Caenorhabditis briggsae]
Length = 507
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 89/184 (48%), Gaps = 26/184 (14%)
Query: 84 RDEQEIAGYRDVLNIIHESF---DAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYIS 140
R+ E+ G L ++ S + +S + IL++H+ + + + AG+I++ Q Y+
Sbjct: 298 REHNEVIGMDAALRFLNCSLLSKEHHEISIDDILEMHRRVLGNADPVEAGKIRTTQVYVG 357
Query: 141 AAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFN 200
FTP+AP E L + + N M ++P+ + + + +HPF
Sbjct: 358 K----------FTPVAPEYVLEQLADMVDWLNDE-STMAMDPIERAAIAHYKLVLVHPFT 406
Query: 201 DGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPF 260
DGNGR +RLL L++ R+GF + +E + YY +L A +G D+ PF
Sbjct: 407 DGNGRTARLLLNLIMMRSGF-PPVILPVETRAE-----YYASLHVANLG------DLRPF 454
Query: 261 IKYL 264
++Y+
Sbjct: 455 VRYV 458
>gi|77457308|ref|YP_346813.1| Filamentation induced by cAMP protein Fic [Pseudomonas fluorescens
PfO-1]
gi|77381311|gb|ABA72824.1| Filamentation induced by cAMP protein Fic [Pseudomonas fluorescens
PfO-1]
Length = 464
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 58/243 (23%), Positives = 108/243 (44%), Gaps = 18/243 (7%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHES 102
L L+E I S++ +EG TT+ K ++K++ P+ DE+ + G ++N E
Sbjct: 128 LNDLIEDEAISSSQ----LEGAATTTRVAKDMLKQRRQPRTPDERMVMGNFRMMNFAWEK 183
Query: 103 FDAIPLSQNYILQLHKILYSHMNNPM--AGRIKSVQNYISAAYSDNHTEILFTPLAPFET 160
PLS I +H++ +++ G ++ + D + +P
Sbjct: 184 -RYEPLSVELIASMHRVGVEGIDDEQYDPGLFRTNDEVV---VQDGEGNTVHSPPPAAGL 239
Query: 161 SEALDKICEEYNRVIGNME----VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLY 216
LD + + N+ G+ + PLI HPF DGNGR++R L L++
Sbjct: 240 VRRLDLLSQWINQPQGSPRQKNYLHPLIKAITLHFALGYEHPFRDGNGRVARALFYWLMF 299
Query: 217 RNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFA 276
++ F +YI++ + + +N + Y GR+ + E D+ FI++ +L A F
Sbjct: 300 KHEFSAFRYIAI-SLLLRNAPVKY---GRSYLHSEADELDLTYFIEFQCSVILRAVEGFT 355
Query: 277 DRF 279
D +
Sbjct: 356 DAY 358
>gi|150401094|ref|YP_001324860.1| filamentation induced by cAMP protein Fic [Methanococcus aeolicus
Nankai-3]
gi|150013797|gb|ABR56248.1| filamentation induced by cAMP protein Fic [Methanococcus aeolicus
Nankai-3]
Length = 434
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 62/241 (25%), Positives = 104/241 (43%), Gaps = 10/241 (4%)
Query: 50 AKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLS 109
A I+ + AS+ IEG TT+ K+++K PKN DE + + I +
Sbjct: 117 AIIEESIASSQIEGAKTTTKMAKEVIKSGKKPKNNDEIMVYNNHVAMKYITNELKNKDFT 176
Query: 110 QNYILQLHKILYSHM-NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKIC 168
+ IL++H ++ + N G +++ + I N T L P E ++ +
Sbjct: 177 IDEILKIHDLISKDLIENKYVGEFRTIDDVIVKDIKTNKT--LHIP----PNHELIEPLI 230
Query: 169 EEYNRVIGNMEVEPLIAIPVFIHDFLC--IHPFNDGNGRMSRLLTTLLLYRNGFYVGKYI 226
E N E I I FL IHPF DGNGR +R L + + + + +Y+
Sbjct: 231 NELCNFANNKEDSTHPIIKGIIIHFLIGYIHPFVDGNGRTARALFYWYMLNSRYTIFEYL 290
Query: 227 SLEAKIAKNKDLYYDA-LGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIK 285
+ I K+K Y ++ L E E D+ FI Y+L + + F + ++E +
Sbjct: 291 KVSEFINKSKGKYKNSYLYVESHKCDEYEGDLTYFIGYILDCIEKSINKFNEELKVLENE 350
Query: 286 L 286
L
Sbjct: 351 L 351
>gi|78357955|ref|YP_389404.1| conserved hypothetical protein, Fic protein family [Desulfovibrio
desulfuricans G20]
gi|78220360|gb|ABB39709.1| conserved hypothetical protein, Fic protein family [Desulfovibrio
desulfuricans G20]
Length = 253
Score = 62.8 bits (151), Expect = 4e-08, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 96/197 (48%), Gaps = 20/197 (10%)
Query: 31 KQEMYLKQRP---EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN--RD 85
KQE+ K+RP ELE+L E ++ T SNAIEG T +++ T K +D
Sbjct: 21 KQELD-KRRPLTQGELERLQEDFLVEFTYNSNAIEGCTLTLRETALVLQGITIDKKPLKD 79
Query: 86 EQEIAGYRDV-LNIIHESFDAIPLSQNYILQLHKILYSHMNNPM-AGRIKSVQNYISAAY 143
E G+RD + ++ + + + ++Q+ I +H ++ +N P G + + I +A
Sbjct: 80 HLEAVGHRDAFVYVLDIAKNNVAITQSAIKDIHALVL--INRPADKGVYRKIPVRIMSAV 137
Query: 144 SDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGN 203
+ P P+ E L ++ E + +M P++ I +F F IHPF DGN
Sbjct: 138 AQ--------PEPPYHIEEKLRELLAENDAASHSMH--PVVRIALFHLIFEGIHPFVDGN 187
Query: 204 GRMSRLLTTLLLYRNGF 220
GR RLL L L + GF
Sbjct: 188 GRTGRLLLNLDLIQCGF 204
>gi|91217745|ref|ZP_01254701.1| hypothetical protein P700755_13960 [Psychroflexus torquis ATCC
700755]
gi|91184083|gb|EAS70470.1| hypothetical protein P700755_13960 [Psychroflexus torquis ATCC
700755]
Length = 322
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 82/320 (25%), Positives = 143/320 (44%), Gaps = 41/320 (12%)
Query: 16 SGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLV 75
S L LI +I ++ G+ L +P KL + +I++ +S IEG T +I L+
Sbjct: 9 SSILKLITSISEKIGEVNANLLNKPSP--KLRKQNRIKTIHSSLRIEGNTLTVEQITALI 66
Query: 76 KEKTTPKNRDEQEIAGYRDVLNI-----IHESFDAI-PLSQNYILQLHKILYSHMNNPMA 129
+ K I +DV+ + I+E+ D P ++ L+ HK L ++ A
Sbjct: 67 ENKRV--------IGPKKDVVEVLNTIKIYENLDTYKPFNEKSFLKAHKNLMENLIED-A 117
Query: 130 GRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVF 189
G+ + I H PF L K +Y + +E LI VF
Sbjct: 118 GKYRKQSVGIVKGAKIEHVA------PPFGNLPYLMKDLFKYLKKSDEIE---LIKSCVF 168
Query: 190 IHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIG 249
++ IHPF DGNGR+ RL TL+L + + +++ E I+ +++ YY AL +
Sbjct: 169 HYEMEFIHPFLDGNGRIGRLWQTLILMEK-YPIFEFLPFETLISNDQEKYYKALAES--- 224
Query: 250 WHEGEEDVVPFIKYLLGTV---LAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQ 306
+ FI+Y+LG + ++ +F +R + +L +LNKI +FT++
Sbjct: 225 --DKSGKSTKFIEYMLGVIDMSISELLNFNNRTLNEKDRLEYF-----VSLNKI-KFTRK 276
Query: 307 DIRELCPSLSISSIEGGLRK 326
D + +S ++ L+K
Sbjct: 277 DYMVIFKDISSATASRDLKK 296
>gi|118580276|ref|YP_901526.1| transcriptional regulator, Fis family [Pelobacter propionicus DSM
2379]
gi|118502986|gb|ABK99468.1| transcriptional regulator, Fis family [Pelobacter propionicus DSM
2379]
Length = 328
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 56/170 (32%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 180 VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLY 239
V PLIA VF ++F IHPF DGNGRM RL TL+L + + Y+ +E+ I + Y
Sbjct: 161 VHPLIASCVFHYEFEFIHPFADGNGRMGRLWQTLILSKWQPLLA-YLPVESLIRVRQAGY 219
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRR----- 294
Y AL A + + D FI+++L LA +D A K + +
Sbjct: 220 YQALADA-----DKQGDSTVFIEFVL---LALQDTLSDALAKTSGKTSGKTSGKTSGKTS 271
Query: 295 ----AALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
AAL + T ++ E+ ++ SIE L+KL G L+R G K
Sbjct: 272 GKIVAALRQNRSMTIPELAEMI-GVTTRSIERNLQKLQGEGRLRRVGPDK 320
>gi|114563126|ref|YP_750639.1| filamentation induced by cAMP protein Fic [Shewanella frigidimarina
NCIMB 400]
gi|114334419|gb|ABI71801.1| filamentation induced by cAMP protein Fic [Shewanella frigidimarina
NCIMB 400]
Length = 333
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 82/172 (47%), Gaps = 21/172 (12%)
Query: 182 PLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR-NGFYVGKYISLEAKIAKNKDLYY 240
PLIA VF ++F IHPF DGNGRM RL TL+L + + ++ + LE+ I ++ YY
Sbjct: 162 PLIASCVFHYEFEFIHPFADGNGRMGRLWQTLILSKWHPLFLS--LPLESVIKDHQQAYY 219
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVE----------IKLPALE 290
AL +A + + D PFI ++L + A A ++ I + L+
Sbjct: 220 HALEQA-----DNQADSTPFIHFMLSVIQQTLAQNASVSAPLKEGQNAPVNTLINVTGLK 274
Query: 291 TVRR--AALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
T A L+ T+Q + + + + +I + KL G L R GS K
Sbjct: 275 TPEAILALLSNTPELTRQQLADTL-NKDVRTIGRAISKLQKEGRLTRVGSDK 325
>gi|84352244|ref|ZP_00977213.1| COG3177: Uncharacterized conserved protein [Burkholderia
cenocepacia PC184]
gi|124879523|gb|EAY66879.1| hypothetical protein BCPG_05281 [Burkholderia cenocepacia PC184]
Length = 374
Score = 62.4 bits (150), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 181 EPLIAIPVFIHD-FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLY 239
EPL+ H F+ +HPF+DGNGR++R L L+L R ++ SL A+I + ++ Y
Sbjct: 194 EPLLIRAGLAHLWFVTLHPFDDGNGRIARALGDLVLARADRSPQRFYSLSAQIQRERNAY 253
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNK 299
YD L R Q G DV ++ + L T+ A V IK + A+N+
Sbjct: 254 YDVLERTQ----RGSLDVTEWLAWFLNTLGRAIDHAHTTLDAVLIKARFWQRCAGVAMNE 309
Query: 300 ---------IGRFTKQDIRELCPSLSISSIEGGLR---KLVSAGELKREGSGKNICYYRL 347
+ F + +L+ S + LR +LV G L+R SG Y L
Sbjct: 310 RQVKVMNRLLDGFEGKLTTSKWAALAKCSQDTALRDITELVEQGMLRRSASGGRSTSYEL 369
>gi|57238567|ref|YP_179698.1| MloA protein, putative [Campylobacter jejuni RM1221]
gi|57167371|gb|AAW36150.1| MloA protein, putative [Campylobacter jejuni RM1221]
Length = 356
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 36/232 (15%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+ IE I+TT + L + R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELF-LSRVDENKLTRAAKEVKDYESALKKGYELLKK 104
Query: 106 IPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
L +N +IL++ K L + + NP+ G IK + + N+ + L
Sbjct: 105 EQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHI-----PPQNPNNIQELMR 159
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
L + ++LD E + L+ + + + F IHPF DGNGR R++ L
Sbjct: 160 NLELYINDDSLD-------------EFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINIL 206
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
L G + L A I KNKD YY L + + E D++ +I+Y+L
Sbjct: 207 YLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVR-----DEGDILKWIEYIL 253
>gi|153874918|ref|ZP_02002945.1| Filamentation induced by cAMP protein Fic [Beggiatoa sp. PS]
gi|152068618|gb|EDN67055.1| Filamentation induced by cAMP protein Fic [Beggiatoa sp. PS]
Length = 407
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 93/372 (25%), Positives = 162/372 (43%), Gaps = 51/372 (13%)
Query: 7 SEIKNQKWDSGTLG--LIAAIY---KEAGKQEMYLK-QRPEELEKLVEIAKIQSTEASNA 60
SE + WD L L+ A Y + +G E + + QR E L +++ IQ S+A
Sbjct: 44 SEWPHFDWDESQLMPLLMKASYWQGRLSGIAEHFTQSQRQEALAEVL----IQDVIKSSA 99
Query: 61 IEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFD--AIPLSQNYILQLHK 118
IEG + + ++ V + + + +L+I +++ A PL+Q + H
Sbjct: 100 IEGEILPADSVRSSVMRRLGLNSLVTAPGMIHEGILDITYDAIQNYAQPLTQERLFAWHT 159
Query: 119 IL----YSHMNNPMAGRIK--SVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYN 172
L YS++ AG+++ +S A S P E+ ALD+ +N
Sbjct: 160 ALFPIGYSNLYAIRAGQLRGEETMQVVSGAISKEKVHFEAPPRLGLES--ALDEFLVWFN 217
Query: 173 RVIGNMEVEP-LIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAK 231
+ + E +P LI + F+ +HPF DGNGR++R +T + L ++ + S+
Sbjct: 218 Q---STENQPGLIRAGIAHLWFVTLHPFEDGNGRIARAITDMALVQSD--QQRLYSMSLY 272
Query: 232 IAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALV--------E 283
I K + YY L + Q +G D+ ++ + LG ++AA + V +
Sbjct: 273 IQKQRQEYYQILEQTQ----KGTLDITAWLDWFLGCLIAAMLESEQLIQSVIEKTHFWQQ 328
Query: 284 IKLPALETVRRAALNKI----------GRFTKQDIRELCPSLSISSIEGGLRKLVSAGEL 333
+ L +R LN++ G T++ + S + +S E L L+S G L
Sbjct: 329 HQQTQLNARQRKVLNRLLDAGPNGFEGGINTRKYVALTKVSKATASRE--LANLLSKGCL 386
Query: 334 -KREGSGKNICY 344
KR G G+N Y
Sbjct: 387 QKRTGGGRNTAY 398
>gi|91773595|ref|YP_566287.1| filamentation induced by cAMP protein Fic [Methanococcoides
burtonii DSM 6242]
gi|91712610|gb|ABE52537.1| filamentation induced by cAMP protein Fic [Methanococcoides
burtonii DSM 6242]
Length = 326
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 9/163 (5%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLH 117
+NAIEG + + ++K + DE E G + ++ I + + + +S IL+LH
Sbjct: 130 TNAIEGSTISPDEVHDILKNNAKARTDDELESIGVAEAVDYIRNTDEKLSIS--LILELH 187
Query: 118 KILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGN 177
++ + + AG+++ V+ I D I+ + E L+++ YN
Sbjct: 188 EMCFRESKD-FAGKLRDVEVIIR----DGRGNIVHQGIPSTEIERELNELTAWYNE--NR 240
Query: 178 MEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
E++PL+ + + F IHPF DGNGR+ RLL L + +
Sbjct: 241 EEIKPLLLAAILHNQFEYIHPFEDGNGRVGRLLLNYALLQKDY 283
>gi|107028509|ref|YP_625604.1| filamentation induced by cAMP protein Fic [Burkholderia cenocepacia
AU 1054]
gi|116686506|ref|YP_839753.1| filamentation induced by cAMP protein Fic [Burkholderia cenocepacia
HI2424]
gi|105897673|gb|ABF80631.1| filamentation induced by cAMP protein Fic [Burkholderia cenocepacia
AU 1054]
gi|116652221|gb|ABK12860.1| filamentation induced by cAMP protein Fic [Burkholderia cenocepacia
HI2424]
Length = 374
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 181 EPLIAIPVFIHD-FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLY 239
EPL+ H F+ +HPF+DGNGR++R L L+L R ++ SL A+I + ++ Y
Sbjct: 194 EPLLIRAGLAHLWFVTLHPFDDGNGRIARALGDLVLARADRSPQRFYSLSAQIQRERNAY 253
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNK 299
YD L R Q G DV ++ + L T+ A V IK + A+N+
Sbjct: 254 YDVLERTQ----RGSLDVTEWLAWFLNTLGRAIDHAHTTLDAVLIKARFWQRCAGVAMNE 309
Query: 300 ---------IGRFTKQDIRELCPSLSISSIEGGLR---KLVSAGELKREGSGKNICYYRL 347
+ F + +L+ S + LR +LV G L+R SG Y L
Sbjct: 310 RQVKVMNRLLDGFEGKLTTTKWAALAKCSQDTALRDITELVEQGMLRRSASGGRSTSYEL 369
>gi|118712752|ref|ZP_01565321.1| filamentation induced by cAMP protein Fic [Burkholderia cenocepacia
MC0-3]
gi|118649790|gb|EAV56586.1| filamentation induced by cAMP protein Fic [Burkholderia cenocepacia
MC0-3]
Length = 374
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 53/180 (29%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 181 EPLIAIPVFIHD-FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLY 239
EPL+ H F+ +HPF+DGNGR++R L L+L R ++ SL A+I + ++ Y
Sbjct: 194 EPLLIRAGLAHLWFVTLHPFDDGNGRIARALGDLVLARADRSPQRFYSLSAQIQRERNAY 253
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNK 299
YD L R Q G DV ++ + L T+ A V IK + A+N+
Sbjct: 254 YDVLERTQ----RGSLDVTEWLAWFLNTLGRAIDHAHTTLDAVLIKARFWQRCAGVAMNE 309
Query: 300 ---------IGRFTKQDIRELCPSLSISSIEGGLR---KLVSAGELKREGSGKNICYYRL 347
+ F + +L+ S + LR +LV G L+R SG Y L
Sbjct: 310 RQVKVMNRLLDGFEGKLTTTKWAALAKCSQDTALRDITELVEQGMLRRSASGGRSTSYEL 369
>gi|78358480|ref|YP_389929.1| conserved hypothetical protein, Fic protein family [Desulfovibrio
desulfuricans G20]
gi|78220885|gb|ABB40234.1| conserved hypothetical protein, Fic protein family [Desulfovibrio
desulfuricans G20]
Length = 253
Score = 62.0 bits (149), Expect = 5e-08, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 95/197 (48%), Gaps = 20/197 (10%)
Query: 31 KQEMYLKQRP---EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN--RD 85
KQE+ K+RP ELE+L E ++ T SNAIEG T +++ T K +D
Sbjct: 21 KQELD-KRRPLTQGELERLQEDFLVEFTYNSNAIEGCTLTLRETALVLQGITIDKKPLKD 79
Query: 86 EQEIAGYRDV-LNIIHESFDAIPLSQNYILQLHKILYSHMNNPM-AGRIKSVQNYISAAY 143
E G+RD + ++ + + + ++Q+ I +H ++ +N P G + + I A
Sbjct: 80 HLEAVGHRDAFVYVLDIAKNNVSITQSTIKDIHALVL--INRPADKGVYRKIPVRIMGAI 137
Query: 144 SDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGN 203
+ P P+ E L + E + +M P++ I +F F IHPF DGN
Sbjct: 138 AQ--------PEPPYHIEEKLREFLAENDAASHSMH--PVVRIALFHLIFGGIHPFIDGN 187
Query: 204 GRMSRLLTTLLLYRNGF 220
GR+ RLL L L + GF
Sbjct: 188 GRIGRLLLNLDLIQCGF 204
>gi|19881229|gb|AAM00840.1|AF486549_2 MloA [Campylobacter jejuni]
Length = 356
Score = 62.0 bits (149), Expect = 6e-08, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 36/232 (15%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+ IE I+TT + L + R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELF-LSRVDENKLTRAAKEVKDYESALKKGYELLKK 104
Query: 106 IPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
L +N +IL++ K L + + NP+ G IK + + N+ + L
Sbjct: 105 EQLLRNAHILEIQKGLERNNAGFRKQSGTMLKNPITGEIKHI-----PPQNPNNIQELMR 159
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
L + ++LD E + L+ + + + F IHPF DGNGR R++ L
Sbjct: 160 NLELYINDDSLD-------------EFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINIL 206
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
L G + L A I KNKD YY L + + E D++ +I+Y+L
Sbjct: 207 YLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVR-----DEGDILKWIEYIL 253
>gi|153951369|ref|YP_001398845.1| putative MloA protein [Campylobacter jejuni subsp. doylei 269.97]
gi|152938815|gb|ABS43556.1| putative MloA protein [Campylobacter jejuni subsp. doylei 269.97]
Length = 356
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 65/239 (27%), Positives = 103/239 (43%), Gaps = 44/239 (18%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRI--KQLVKEKTTPKNRDEQEIAGYRDVLNIIHESF 103
L+ +Q + S+ IE I+TT + Q+ + K T R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELFLSQIDESKLT---RAAKEVKDYESALKKGYELL 102
Query: 104 DAIPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEI- 150
L +N +IL++ K L + + NP+ G IK + NH +I
Sbjct: 103 KKERLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIP-------PQNHNDIQ 155
Query: 151 -LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRL 209
L L + + LD E++ L+ + + + F IHPF DGNGR R+
Sbjct: 156 ELMRNLEQYINDDTLD-------------ELDFLVKMAIIHYQFESIHPFYDGNGRTGRI 202
Query: 210 LTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
+ L L G + L A I KNK YY L + + EE ++ +I+Y+L V
Sbjct: 203 INILYLVYKGLLDLPILYLSAYIVKNKGEYYSLLQKVR-----DEEAILEWIEYILKGV 256
>gi|124545320|ref|ZP_01704525.1| filamentation induced by cAMP protein Fic [Shewanella putrefaciens
200]
gi|124511076|gb|EAY55142.1| filamentation induced by cAMP protein Fic [Shewanella putrefaciens
200]
Length = 333
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 53/172 (30%), Positives = 83/172 (48%), Gaps = 21/172 (12%)
Query: 182 PLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR-NGFYVGKYISLEAKIAKNKDLYY 240
PLIA VF ++F IHPF DGNGRM RL TL+L + + ++ + LE+ I ++ YY
Sbjct: 162 PLIASCVFHYEFEFIHPFADGNGRMGRLWQTLILSKWHPLFLS--LPLESVIKDHQQAYY 219
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLL----------GTVLAAYRDFADRFALVEIKLPALE 290
AL +A + + D PFI ++L +V A ++ + I + L+
Sbjct: 220 HALEQA-----DNQADSTPFIHFMLSVIQQTLVQNASVNAPLKEGENAPVNTLINVTGLK 274
Query: 291 TVRR--AALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
T A L+ T+Q + + + + +I + KL G L R GS K
Sbjct: 275 TPEAILALLSSTPELTRQQLADTL-NKDVRTIGRAISKLQKEGRLTRVGSDK 325
>gi|15892452|ref|NP_360166.1| similarity to cell filamentation proteins (fic) [Rickettsia conorii
str. Malish 7]
gi|15619607|gb|AAL03067.1| similarity to cell filamentation proteins (fic) [Rickettsia conorii
str. Malish 7]
Length = 322
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 76/312 (24%), Positives = 149/312 (47%), Gaps = 37/312 (11%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFD 104
KL + +I++ +S AIEG + +I ++ +K E++I ++ + + +
Sbjct: 38 KLRKNNQIKTIHSSLAIEGNSLSVEQITDIINDKRVLA--PEKDIVEVKNAIKLYNNLTI 95
Query: 105 AIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSD-NHTEILFTPLAPFETSEA 163
P +L+ H+IL M G ++ + S TEI++ AP T+
Sbjct: 96 FNPFKIESLLKAHEIL-------MQGLVEDNGKWRKGNASIFKGTEIIY--FAP--TARR 144
Query: 164 LDKICEE-YNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV 222
+ + ++ + + + ++ ++ +F ++F IHPF+DGNGR+ RL LLL + +
Sbjct: 145 VSLLMQDLFEFIAQDKQISGIVKACIFHYEFEFIHPFSDGNGRIGRLWQQLLLMQAN-KI 203
Query: 223 GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALV 282
+YIS+E+ I N+ YY L + GE + FI+++L ++AA R +++
Sbjct: 204 FEYISVESLIRNNQSEYYSVLSKCD---KLGESTL--FIEFMLDKIVAALRLYSNNITY- 257
Query: 283 EIKLPALETVRRAALNKIGR-FTKQDIRELCPSLSISSIEGGL------RKLVSAGELKR 335
E P L + A +N I + F+++D + ++S ++ L + L+S G+
Sbjct: 258 EANTP-LSRMEFAKVNLIDQWFSRKDYITVHKNISTATASRDLLYGLERKLLISKGD--- 313
Query: 336 EGSGKNICYYRL 347
KN YY+
Sbjct: 314 ----KNQTYYKF 321
>gi|118580700|ref|YP_901950.1| filamentation induced by cAMP protein Fic [Pelobacter propionicus
DSM 2379]
gi|118503410|gb|ABK99892.1| filamentation induced by cAMP protein Fic [Pelobacter propionicus
DSM 2379]
Length = 250
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 49/199 (24%), Positives = 96/199 (48%), Gaps = 24/199 (12%)
Query: 42 ELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR---DEQEIAGYRDVLNI 98
E+++L E +I T +SNA+EG T + K ++++ T + D E G+ + ++
Sbjct: 27 EVKQLKEYYRIGLTWSSNALEGNSLTESETKVVLEDGITIGGKPLKDHFEAVGHSEAFDL 86
Query: 99 IHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPF 158
+++ + ++++ IL LH++ Y + AG+ + I+ FTP P
Sbjct: 87 LYKLAGSQEITEDDILGLHRLFYYRIQAETAGKYRDRNVIITGTD--------FTPPPPS 138
Query: 159 ETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLLLYR 217
+ + +++ I ++ + + +H + + IHPF DGNGR +RLL L L +
Sbjct: 139 DIPLTM----QDFINSIPSLSLMHPVEYAAMLHLNLVTIHPFIDGNGRTARLLMNLALLQ 194
Query: 218 NGFYV--------GKYISL 228
G+ + G YIS+
Sbjct: 195 AGYPITIIPPIIRGDYISV 213
>gi|103488094|ref|YP_617655.1| filamentation induced by cAMP protein Fic [Sphingopyxis alaskensis
RB2256]
gi|98978171|gb|ABF54322.1| filamentation induced by cAMP protein Fic [Sphingopyxis alaskensis
RB2256]
Length = 368
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F+ IHPF+DGNGR++R + L L R ++ S+ A+I + YYD L RAQ +
Sbjct: 201 FVTIHPFDDGNGRIARAIADLALARAEGTAQRFYSMSAQIRVERKAYYDMLERAQ----K 256
Query: 253 GEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKIGR 302
G+ D+ P++ + +G + A+ A V K E+V LN+ R
Sbjct: 257 GDLDITPWLLWFIGCLDRAFDGAETILASVMRKARFWESVAGQPLNERQR 306
>gi|16121181|ref|NP_404494.1| hypothetical protein YPO0874 [Yersinia pestis CO92]
gi|22127132|ref|NP_670555.1| hypothetical protein y3256 [Yersinia pestis KIM]
gi|45443307|ref|NP_994846.1| hypothetical protein YP_3572 [Yersinia pestis biovar Microtus str.
91001]
gi|51597430|ref|YP_071621.1| hypothetical protein YPTB3117 [Yersinia pseudotuberculosis IP
32953]
gi|77635805|ref|ZP_00797885.1| COG3177: Uncharacterized conserved protein [Yersinia pestis Angola]
gi|89104800|ref|ZP_01177333.1| COG3177: Uncharacterized conserved protein [Yersinia pestis biovar
Orientalis str. IP275]
gi|108806396|ref|YP_650312.1| hypothetical protein YPA_0399 [Yersinia pestis Antiqua]
gi|108813233|ref|YP_649000.1| hypothetical protein YPN_3073 [Yersinia pestis Nepal516]
gi|150260113|ref|ZP_01916841.1| hypothetical protein YPE_2392 [Yersinia pestis CA88-4125]
gi|153950255|ref|YP_001399880.1| Fic family protein [Yersinia pseudotuberculosis IP 31758]
gi|21960192|gb|AAM86806.1|AE013927_4 hypothetical [Yersinia pestis KIM]
gi|45438175|gb|AAS63723.1| conserved hypothetical protein [Yersinia pestis biovar Microtus
str. 91001]
gi|51590712|emb|CAH22355.1| Conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108776881|gb|ABG19400.1| hypothetical protein YPN_3073 [Yersinia pestis Nepal516]
gi|108778309|gb|ABG12367.1| hypothetical protein YPA_0399 [Yersinia pestis Antiqua]
gi|115346660|emb|CAL19543.1| hypothetical protein [Yersinia pestis CO92]
gi|149289521|gb|EDM39598.1| hypothetical protein YPE_2392 [Yersinia pestis CA88-4125]
gi|152961750|gb|ABS49211.1| Fic family protein [Yersinia pseudotuberculosis IP 31758]
Length = 380
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 183 LIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV---GKYISLEAKIAKNKDLY 239
L+ + + H F IHPF +GNGR RLLT LL + GF V G+ ++ A +++ Y
Sbjct: 178 LMKVALAHHRFGWIHPFGNGNGRTVRLLTYSLLIKYGFNVKTSGRVLNPTAVFCNDRERY 237
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFAD-RFALVEIKLPALETVR-RAAL 297
Y L A G EG E ++ + L +D F ++ PALE + R +
Sbjct: 238 YSMLAEADTGAVEGLEQWCLYVLTGISAELKKVDKLSDLHFLNSKVLYPALEYSKGRGVI 297
Query: 298 NKI-----------GRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNI 342
N+ G D++E+ P L + I + KLV G L+ G I
Sbjct: 298 NETESKILKRTISQGTVKTSDLKEVLPGLKPAQITYQIGKLVDRGLLQPVEVGSRI 353
>gi|145597947|ref|YP_001162023.1| hypothetical protein YPDSF_0641 [Yersinia pestis Pestoides F]
gi|145209643|gb|ABP39050.1| hypothetical protein YPDSF_0641 [Yersinia pestis Pestoides F]
Length = 380
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 183 LIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV---GKYISLEAKIAKNKDLY 239
L+ + + H F IHPF +GNGR RLLT LL + GF V G+ ++ A +++ Y
Sbjct: 178 LMKVALAHHRFGWIHPFGNGNGRTVRLLTYSLLIKYGFNVKTSGRVLNPTAVFCNDRERY 237
Query: 240 YDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFAD-RFALVEIKLPALETVR-RAAL 297
Y L A G EG E ++ + L +D F ++ PALE + R +
Sbjct: 238 YSMLAEADTGAVEGLEQWCLYVLTGISAELKKVDKLSDLHFLNSKVLYPALEYSKGRGVI 297
Query: 298 NKI-----------GRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNI 342
N+ G D++E+ P L + I + KLV G L+ G I
Sbjct: 298 NETESKILKRTISQGTVKTSDLKEVLPGLKPAQITYQIGKLVDRGLLQPVEVGSRI 353
>gi|19881251|gb|AAM00859.1|AF486552_5 MloA [Campylobacter jejuni]
Length = 356
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 36/232 (15%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+ IE I+TT + L + R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELF-LSRVDENKLTRAAKEVKDYESALKKGYELLKK 104
Query: 106 IPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
L +N +IL++ K L + + NP+ G IK + + N + L
Sbjct: 105 EQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHI-----PPQNPNDIQELMG 159
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
L + ++LD E + L+ + + + F IHPF DGNGR R++ L
Sbjct: 160 NLELYINDDSLD-------------EFDFLVKMAIIHYQFKSIHPFYDGNGRTGRIINIL 206
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
L G + L A I KNKD YY L + + E D++ +I+Y+L
Sbjct: 207 YLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVR-----DEGDILKWIEYIL 253
>gi|71909566|ref|YP_287153.1| Filamentation induced by cAMP protein Fic [Dechloromonas aromatica
RCB]
gi|71849187|gb|AAZ48683.1| Filamentation induced by cAMP protein Fic [Dechloromonas aromatica
RCB]
Length = 384
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 16/238 (6%)
Query: 47 VEIAKIQSTEA--SNAIEGIVTTSTRIKQLVKEKTTPKNR--DEQEIAGYRDVLNIIHES 102
V ++ I + EA S+ IEG T + + +T +N+ D +E+ YR L + E
Sbjct: 48 VLLSPITNQEAVLSSKIEGTQATLEEVLEHEAGQTHDENKTQDIREVLNYRKALMLAQEQ 107
Query: 103 FDAIPLSQNYILQLHKILYSHM--NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFET 160
PL + +L LH IL + N G + QN+I + E F P +P
Sbjct: 108 LQGRPLRLSLLLHLHTILMDSVRGQNKTPGEFRKEQNWIGRT-GCSMEEASFIPPSPLRL 166
Query: 161 SEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
+ L + + + + + + L + F IHPF DGNGR+ RLL LLLY G
Sbjct: 167 HDHL----QAWETYLSSTDFDVLAQTAIAHAQFELIHPFKDGNGRIGRLLIPLLLYAKGR 222
Query: 221 YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADR 278
L A + N+D YY A++ E D +I + L ++ D R
Sbjct: 223 LFSPMFYLSAYLESNRDEYY-----ARLKAISKEGDWTGWIAFFLRAIIEQATDNTAR 275
>gi|56419287|ref|YP_146605.1| huntingtin interacting protein E-like protein [Geobacillus
kaustophilus HTA426]
gi|56379129|dbj|BAD75037.1| huntingtin interacting protein E-like protein [Geobacillus
kaustophilus HTA426]
Length = 248
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 61/252 (24%), Positives = 116/252 (46%), Gaps = 31/252 (12%)
Query: 36 LKQR--------PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTT---PKNR 84
LKQR P ++ L E +I+ T SNAIEG T K +++E T + +
Sbjct: 8 LKQRLDALRPLPPGLVKNLRESFRIEWTYHSNAIEGNTLTLLETKLVIEEGITIGGKRLK 67
Query: 85 DEQEIAGYRDVLNIIHESF-DAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAY 143
+ E + + ++ I E + L+++ + Q+H ++ ++N AG+ ++ IS +
Sbjct: 68 EHLEAINHAEAIDFIEELVANKEHLTEHVLKQVHYLVLKSIDNENAGKYRTYNVRISGSS 127
Query: 144 SDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGN 203
+TP + ++++ Y + P+ F + IHPF DGN
Sbjct: 128 --------YTPPHFLHIQDEMNQLFSWYE--TNQHALHPIELAARFHFQLVYIHPFADGN 177
Query: 204 GRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKY 263
GR +RL+ +L ++G+ ++ + + YY+AL +A + +GE V PFI+
Sbjct: 178 GRTARLMMNFILMQHGYPP----AIVKANPEQRRKYYEALEKASV---KGE--VTPFIQL 228
Query: 264 LLGTVLAAYRDF 275
+ V + R +
Sbjct: 229 IAACVEESLRHY 240
>gi|28867752|ref|NP_790371.1| Fic family protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|28850987|gb|AAO54066.1| Fic family protein [Pseudomonas syringae pv. tomato str. DC3000]
Length = 376
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 66/271 (24%), Positives = 121/271 (44%), Gaps = 47/271 (17%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEG--------IVTTSTR 70
LG+ A+ + G QE+ L+ L +Q+ S+AIEG + + R
Sbjct: 38 LGMSGAVAGDTGMQEV--------LDTL-----LQNIITSSAIEGEQLNVGSVRSSLARR 84
Query: 71 IKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAG 130
+ K K +P++ E+ +L+ I A+ L + Y H+ L++ +N ++G
Sbjct: 85 LGIADKGKLSPRSEGLAEL-----MLDAIRGHAQALDLQRLY--DWHRWLFTAEDNSVSG 137
Query: 131 RIKSVQNYISAAYSDNHTEI----LFTPLAPFET------SEALDKICEEYNRVIGNMEV 180
RI + Q D+ ++ L P FE S LD + + + +
Sbjct: 138 RILAGQ-----LRGDDPMQVVSGRLDRPKVHFEAPPRPVLSRQLDDFIDWFATSQNDQRL 192
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
+P I + FL +HPF+DGNGR++R LT L L + + ++ A I ++ YY
Sbjct: 193 DPFIRAGIAHFWFLTLHPFDDGNGRLTRALTDLALAQGDQQAIRLFAMSASILDDRTGYY 252
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLGTVLAA 271
L +Q + D+ ++++ L T+L++
Sbjct: 253 RVLEASQ----KSTTDITQWLEWFLRTLLSS 279
>gi|91082707|ref|XP_972015.1| PREDICTED: similar to CG9523-PA [Tribolium castaneum]
Length = 344
Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats.
Identities = 65/271 (23%), Positives = 122/271 (45%), Gaps = 35/271 (12%)
Query: 3 PFNYSEIKNQKWDSGTLG-LIAAIYKEAGKQEMYLKQRPEE--LEKLVEIAKIQSTEASN 59
P + + + N K S + L ++K K++ YLK++ + E L + A +
Sbjct: 66 PTHAAALTNHKRTSPVVDRLDLELFKSIDKKKDYLKKQFDSYNFETLKKQAYYLHIYHTV 125
Query: 60 AIEGIVTTSTRIKQLVKEKTTPKNR---DEQEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
IEG T +++ L++ + + + E+ G + L + ++ + ILQ+
Sbjct: 126 GIEGNTMTVEQLRTLLETGQVIQGKSIIEHNEVLGLQLALKYVKSLARKEYITVDDILQM 185
Query: 117 HKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIG 176
HK + H++ +G + + ++ + P SE L + E Y +
Sbjct: 186 HKRVMGHVDPLTSGIFRDTKVFVGRH------------IPP--PSEKLPALMESYVNWLN 231
Query: 177 NME---VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIA 233
+ E + P+ + + + IHPF DGNGR SRL+ L+L R G+ I + +
Sbjct: 232 SDEARNMHPVRYAALAHYKLVDIHPFVDGNGRTSRLIMNLILLRGGY---PPIMI---LK 285
Query: 234 KNKDLYYDALGRAQIGWHEGEEDVVPFIKYL 264
+ +D YYDAL A +G DV PF++++
Sbjct: 286 EQRDRYYDALNVANVG------DVRPFVRFI 310
>gi|46580449|ref|YP_011257.1| Fic family protein [Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough]
gi|46449868|gb|AAS96517.1| Fic family protein [Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough]
Length = 264
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 29/238 (12%)
Query: 38 QRP---EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTT---PKNRDEQEIAG 91
RP E + +L ++ T SNAIEG + K ++++ T R+ E
Sbjct: 35 HRPLPAEAVRQLRADMVLRYTFHSNAIEGNTLSLMETKVVLEDGMTIGGKSVREHLEAIN 94
Query: 92 YRDVLNIIHESFDA-IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEI 150
+ + ++ + DA PL + + +LH++++ +++ AGR ++ IS A HT
Sbjct: 95 HAEAISFLETLVDAGAPLDERSLKELHQLVFRGISDS-AGRYRTGNVIISGA---GHT-- 148
Query: 151 LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLL 210
P +D + Y + M++ P+ D + IHPF DGNGR SRL
Sbjct: 149 ---PPDHLHVQHRMDAFFDWYGQ--EEMQLHPVERAARMHADLVVIHPFTDGNGRTSRLA 203
Query: 211 TTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
L L R GF I +E + A ++L DA+G Q D PFI+ ++ V
Sbjct: 204 MNLELMRAGFPT-VVIPVEQRAAYYENL--DAVGTRQ--------DYEPFIRQVVALV 250
>gi|19881268|gb|AAM00873.1|AF486555_4 MloA [Campylobacter jejuni]
Length = 356
Score = 61.6 bits (148), Expect = 8e-08, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 36/232 (15%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+ IE I+TT + L + R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELF-LSRVDENKLTRAAKEVKDYESALKKGYELLKK 104
Query: 106 IPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
L +N +IL++ K L + + NP+ G IK + + N + L
Sbjct: 105 EQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHI-----PPQNPNDIQELMG 159
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
L + ++LD E + L+ + + + F IHPF DGNGR R++ L
Sbjct: 160 NLELYINDDSLD-------------EFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINIL 206
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
L G + L A I KNKD YY L + + E D++ +I+Y+L
Sbjct: 207 YLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVR-----DEGDILKWIEYIL 253
>gi|116751280|ref|YP_847967.1| filamentation induced by cAMP protein Fic [Syntrophobacter
fumaroxidans MPOB]
gi|116700344|gb|ABK19532.1| filamentation induced by cAMP protein Fic [Syntrophobacter
fumaroxidans MPOB]
Length = 334
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 24/219 (10%)
Query: 54 STEASNAIEGIVTTSTRIKQLVK-EKTTPKNRDEQEIAGYRDVLNIIHESFDAI-PLSQN 111
+ S AIEG + ++I ++ ++ R+ QE+ ++ L ++ FD P ++
Sbjct: 47 TIHGSLAIEGNTLSESQITAILDGKRVIAPPREVQEV---KNAL-AAYDRFDTWRPEAET 102
Query: 112 YILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEY 171
+L+ H+IL S + + AGR + + A H +AP +E + ++ +
Sbjct: 103 DLLEAHRILMSGLIDE-AGRYRHGGVGVMAGQQLIH-------MAP--PAERVSQLMGDL 152
Query: 172 NRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR-NGFYVGKYISLEA 230
+ PLIA VF ++F IHPF DGNGRM RL +L+L R N + I +E+
Sbjct: 153 FGWLAVANAHPLIAGSVFHYEFEFIHPFADGNGRMGRLWQSLILARWNPLFAN--IPVES 210
Query: 231 KIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVL 269
I +++ YY AL + + D PFI ++L +L
Sbjct: 211 LIFEHQTEYYAALQEST-----RQTDSAPFIAFMLRMIL 244
>gi|87121098|ref|ZP_01076989.1| hypothetical protein MED121_10889 [Marinomonas sp. MED121]
gi|86163590|gb|EAQ64864.1| hypothetical protein MED121_10889 [Marinomonas sp. MED121]
Length = 378
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 63/237 (26%), Positives = 111/237 (46%), Gaps = 22/237 (9%)
Query: 58 SNAIEG-----IVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAI--PLSQ 110
S+AIEG S+ +L ++ P R EQ + +L+ + S +++ PLS
Sbjct: 60 SSAIEGEKLNAFSVRSSLANKLGVSESEPYARSEQSDSLADLMLDALPSSTESLKAPLSL 119
Query: 111 NYILQLHKILYSH-------MNNPMAGRIK-----SVQNYISAAYSDNHTEILFTPLAPF 158
N IL H++L+S N+ + G+++ V +Y D T P
Sbjct: 120 NRILHWHRLLFSGDAGQSYLSNDILVGQLRGESPMQVISYQKRGRIDRPTLHFEAP--GR 177
Query: 159 ETSEA-LDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR 217
E EA L + +N+ + + ++P++ + F+ +HP +DGNGR++RLLT L L +
Sbjct: 178 ERLEADLTFFIDWFNQSLLDESLDPVLRAGITHLWFVTLHPMDDGNGRLTRLLTDLALAQ 237
Query: 218 NGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRD 274
+ ++ I +N+ YYD L Q G + + +V F+K L ++L D
Sbjct: 238 GESQSIRLYAMSVSILENRQSYYDVLESVQKGQLDITDWLVWFLKTLNQSLLNTLAD 294
>gi|86153169|ref|ZP_01071374.1| MloA [Campylobacter jejuni subsp. jejuni HB93-13]
gi|85844054|gb|EAQ61264.1| MloA [Campylobacter jejuni subsp. jejuni HB93-13]
Length = 356
Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 36/232 (15%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+ IE I+TT + L + R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELF-LSRVDENKLTRAAKEVKDYESALKKGYELLKK 104
Query: 106 IPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
L +N +IL++ K L + + NP+ G IK + + N + L
Sbjct: 105 EQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHI-----PPQNPNDIQELMG 159
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
L + ++LD E + L+ + + + F IHPF DGNGR R++ L
Sbjct: 160 NLELYINDDSLD-------------EFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINIL 206
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
L G + L A I KNKD YY L + + E D++ +I+Y+L
Sbjct: 207 YLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVR-----DEGDILKWIEYIL 253
>gi|52548921|gb|AAU82770.1| conserved hypothetical protein [uncultured archaeon GZfos19C8]
Length = 338
Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 53/204 (25%), Positives = 95/204 (46%), Gaps = 22/204 (10%)
Query: 35 YLKQR---PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQE 88
YL+ R P+E E+ + + + + AIEG T + ++L + P R+ E
Sbjct: 87 YLRFREIYPDEFERYRQAVFVHYAQGTTAIEGNTITQRQAEELFEHSVAPAGKTVREIHE 146
Query: 89 IAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHT 148
+ +++ L ES+ A +S+ I + H I+ ++++ +G + +Q +I
Sbjct: 147 LINFKE-LERFFESY-AGDVSEKLIKKTHTIIMRNLSD-TSGEYRRIQVWIEKEE----- 198
Query: 149 EILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMS 207
+ P PFE + ++ Y N P + + + +H + IHPF DGNGR+
Sbjct: 199 ---YVPPPPFEIPALMKELITWYR---ANKRKLPPLELAIILHTKIVTIHPFVDGNGRLG 252
Query: 208 RLLTTLLLYRNGFYVGKYISLEAK 231
R L +L RNG Y Y+ LE +
Sbjct: 253 RALLNFVLRRNG-YPTLYLDLEHR 275
>gi|148266158|ref|YP_001232864.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
gi|146399658|gb|ABQ28291.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
Length = 359
Score = 61.2 bits (147), Expect = 9e-08, Method: Composition-based stats.
Identities = 58/238 (24%), Positives = 98/238 (41%), Gaps = 45/238 (18%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQL--VKEKTTPKNRDEQEIAGYRDVLNIIHESF 103
L+ +Q S+ IE I+TT+ ++ Q V+ + P + E+ YR L +
Sbjct: 53 LINSIPLQEARTSSEIENIITTNDKLFQAAAVESASDPATK---EVLHYRTALKNGFDML 109
Query: 104 DAIPLSQNYILQL-----------HKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILF 152
P+S N ++ + K+ + ++NP G E+ +
Sbjct: 110 QERPISVNLMIDICRTLKNTEIDVRKVTGTTLSNPATG------------------EVYY 151
Query: 153 TPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTT 212
TP P +K+ + +++PLI + V + F IHPF+DGNGR R+L
Sbjct: 152 TP--PEGEGIIREKLGNLETYIHQEDDLDPLIKMAVMHYQFEAIHPFHDGNGRTGRILNI 209
Query: 213 LLLYRNGFYVGKYISLEAKIAKNKDLYYDALGR--AQIGWHEGEEDVVPFIKYLLGTV 268
L L G + L I +NK+ YY L A+ W P++ Y+L +
Sbjct: 210 LFLVEKGLLKIPVLYLSRYIIQNKNEYYRLLREVTAKGAWE-------PWVIYMLAAI 260
>gi|149115383|ref|ZP_01842127.1| filamentation induced by cAMP protein Fic [Shewanella baltica
OS223]
gi|146864833|gb|EDK50213.1| filamentation induced by cAMP protein Fic [Shewanella baltica
OS223]
Length = 333
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 86/339 (25%), Positives = 146/339 (43%), Gaps = 44/339 (12%)
Query: 19 LGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK 78
L L+A I ++ G+ +L K I I T A IEG T +I +V+ K
Sbjct: 14 LNLVAQISQQVGELNASQLNASPQLRKQNRIKTITGTLA---IEGNSLTEEQITAIVEGK 70
Query: 79 TTPKNRDEQEIAGYRDVLNIIHESFDAIPL----SQNYILQLHKILYSHMNNPMAGRIKS 134
P +E+A + + ++DA+P + + +L H ++ S + AG +S
Sbjct: 71 --PVLGSVRELAEVKGAI----AAYDALPTFTPSAIDDLLTAHGLMLSDIL-VNAGEFRS 123
Query: 135 VQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFL 194
I +H +AP + + + + + + + PLIA VF ++F
Sbjct: 124 KGVGIHKGGVVHH-------VAP--PAHQVSGLMADLIQWLKQTKDHPLIASCVFHYEFE 174
Query: 195 CIHPFNDGNGRMSRLLTTLLLYR-NGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEG 253
IHPF DGNGRM RL TL+L + + ++ + LE+ I ++ YY AL +A +
Sbjct: 175 FIHPFADGNGRMGRLWQTLILSKWHPLFLS--LPLESVIKDHQQAYYHALEQA-----DN 227
Query: 254 EEDVVPFIKYLLGTVLAAYRDFADRFALVE----------IKLPALETVRR--AALNKIG 301
+ D PFI ++L + A ++ I + L+T A L+
Sbjct: 228 QADSTPFIHFMLSVIQQTLAQNASVSTPLKEGKNAPVNTLINVTGLKTPEAILALLSNTP 287
Query: 302 RFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGK 340
T+Q + + + + +I + KL G L R GS K
Sbjct: 288 ELTRQQLADTL-NKDVRTIGRAISKLQKEGRLTRVGSDK 325
>gi|91773497|ref|YP_566189.1| filamentation induced by cAMP protein Fic [Methanococcoides
burtonii DSM 6242]
gi|91712512|gb|ABE52439.1| filamentation induced by cAMP protein Fic [Methanococcoides
burtonii DSM 6242]
Length = 438
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 74/324 (22%), Positives = 145/324 (44%), Gaps = 31/324 (9%)
Query: 44 EKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESF 103
EK + + ++ AS+ IEG + K+++++ P+N+DE+ I + + + E
Sbjct: 116 EKYILNSLMEEAIASSQIEGATPSRRVAKEMLRKSKKPENKDERMIINNYNTMKYVLEIK 175
Query: 104 DAIPLSQNYILQLHK-ILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSE 162
+ ++ +L++ K + ++P + + I DN E+L TP E SE
Sbjct: 176 NE-EMTPELLLEIQKRMTEGTFDDPEDEGVFRDNDEIRVF--DNDGEVLHTPPKKEEVSE 232
Query: 163 ALDKICEEYNRVIGNMEVEPLIAIPVFIHDFL-CIHPFNDGNGRMSRLLTTLLLYRNGFY 221
+ ++C N + P+I +F+H L IHPFNDGNGR R L + + ++
Sbjct: 233 LVSELCNFANN-DDQFFIHPIIK-GIFLHYLLNYIHPFNDGNGRTGRSLFYWYVLKKDYW 290
Query: 222 VGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEE----DVVPFIKYLLGTVLAAYRDFAD 277
+ +Y+S+ I K + Y A + + ++ D+ FIK+ L ++ + +
Sbjct: 291 LFEYMSVSRLIYKKRRQYKLAYQYTESDYFFDKDKEIGDLTYFIKFNLTAIIESLHEI-- 348
Query: 278 RFALVEIKLP-------------ALETVRRAALNKIGRFTKQD--IRELCPS--LSISSI 320
+EIK L T +R L + ++ + ++E+ + +S ++
Sbjct: 349 -LKYLEIKQQEQYQALKYMNESDELNTRQREILRQFIKYPHKTMAVKEVMNTQGVSYATA 407
Query: 321 EGGLRKLVSAGELKREGSGKNICY 344
L L G LK++ SGK +
Sbjct: 408 RSDLFYLEEIGHLKKQKSGKEFLF 431
>gi|134045666|ref|YP_001097152.1| filamentation induced by cAMP protein Fic [Methanococcus
maripaludis C5]
gi|132663291|gb|ABO34937.1| filamentation induced by cAMP protein Fic [Methanococcus
maripaludis C5]
Length = 392
Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 63/209 (30%), Positives = 93/209 (44%), Gaps = 17/209 (8%)
Query: 41 EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEK---TTPKNRDEQEIAGYRDVLN 97
EEL L + ++ S+ IEGI TT + L+ EK + K D E+ Y+ L
Sbjct: 66 EELTLLEKPFILKEAVLSSEIEGIHTTISDF--LINEKKPEVSEKKYDILEVTNYKTAL- 122
Query: 98 IIHESFDAIPLSQNYILQLHKILYSHM--NNPMAGRIKSVQNYISAAYSDNHTEILFTPL 155
E ++++ IL++HKIL + + G K +QNYI S F P
Sbjct: 123 ---EYGINKEITEDLILEIHKILLDGVRGQDKTPGEYKRLQNYIGTK-STGLKYAKFVPA 178
Query: 156 APFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLL 214
+P T + + E I N + PLI +H F IHPF DGNGR R+L L+
Sbjct: 179 SPRRTKMLIRNLIE----YIKNKDEIPLIYKIALMHYQFETIHPFRDGNGRTGRILIILI 234
Query: 215 LYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
L + G + L ++ + Y D L
Sbjct: 235 LMKYGLLKKPALYLSEFFSERRTEYQDRL 263
>gi|126180204|ref|YP_001048169.1| filamentation induced by cAMP protein Fic [Methanoculleus
marisnigri JR1]
gi|125862998|gb|ABN58187.1| filamentation induced by cAMP protein Fic [Methanoculleus
marisnigri JR1]
Length = 384
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 28/224 (12%)
Query: 34 MYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN--RDEQEIAG 91
MY+K+ E L+ ++I+ T+AS ++G++ I+ P++ + QE+
Sbjct: 67 MYIKK-----EALLS-SQIEGTQAS--LQGVLEFEAHIR--------PRDDINEIQEVLN 110
Query: 92 YRDVLNIIHESFDAIPLSQNYILQLHKILY--SHMNNPMAGRIKSVQNYISAAYSDNHTE 149
Y L+ E PLS + + ++H+ L + ++ + GR++ VQN+I +
Sbjct: 111 YIKALHHGIEKLGFSPLSLDLMNEIHRFLIQGTRGSHKLPGRLRHVQNWIGVP-GGTIQD 169
Query: 150 ILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFL-CIHPFNDGNGRMSR 208
+F P P E + + ++ + I + + P + IH L IHP+ DGNGRM R
Sbjct: 170 AVFVPPPP----EQVPGLMQDLEQFIQSHDRTPTLVKAALIHAQLETIHPYLDGNGRMGR 225
Query: 209 LLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALG--RAQIGW 250
L+ T L + L + +N++ YY L R Q W
Sbjct: 226 LMITFYLCSKDVLARPLLYLSYYLKRNREKYYTLLNGIRYQGNW 269
>gi|72039433|ref|XP_797187.1| PREDICTED: similar to HYPE [Strongylocentrotus purpuratus]
gi|115969324|ref|XP_001196083.1| PREDICTED: similar to HYPE [Strongylocentrotus purpuratus]
Length = 368
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/223 (24%), Positives = 104/223 (46%), Gaps = 31/223 (13%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNR---DEQEIAGYRDVLNIIHESFDAI--PLSQNY 112
+ AIEG + +++ +++ + + E+ G L I+++ ++ N
Sbjct: 145 TTAIEGNTLSLEQMRSIMETGLAIGGKSIMEHNEVLGLNLALQFINDTLQHRFGKITVND 204
Query: 113 ILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYN 172
ILQ+HK + H++ AG +++ Q ++ + P E ++ ++ + N
Sbjct: 205 ILQIHKRVLGHVDPITAGNLRTTQVFVGG----------YIPPPSVEVNDLMEDFVDWMN 254
Query: 173 RVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKI 232
+ P+ + + F+ IHPF DGNGR SRLL L+L R G Y + K+
Sbjct: 255 SEEA-ASLHPVEFAALAHYKFIYIHPFIDGNGRTSRLLMNLILLRAG-----YPPVIVKL 308
Query: 233 AKNKDLYYDALGRAQIGWHEGEEDVVPFIKYL---LGTVLAAY 272
++ + YY+ + +A G D+ PFI+++ L +L AY
Sbjct: 309 SQ-RGQYYETIIQANAG------DIRPFIRFICNCLDDMLDAY 344
>gi|62391656|ref|YP_227058.1| hypothetical protein cg3120 [Corynebacterium glutamicum ATCC 13032]
gi|41326998|emb|CAF20842.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC
13032]
Length = 462
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIA--------GYRD 94
L+ +E AK + +NAIEGI T V T EQ++A + D
Sbjct: 57 LDAALERAKRAAAVDTNAIEGIFQTDRGFTHTV---ATQVGAWEQQMAMKGKHVKPAFDD 113
Query: 95 VLNIIHESFDAI----PLSQNYILQLHKILYSHMNNPMAGRIKSVQN-------YISAAY 143
L DA+ P+SQ +I LH ++ + VQN Y +
Sbjct: 114 TLEGFEYVLDAVTGRTPISQQWIRNLHAVILRSQESHEVFTAVGVQNQALQKGEYKTQPN 173
Query: 144 SDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFI------HDFLCIH 197
S ++ AP E + A E R I +E + +A I + F+CIH
Sbjct: 174 SPQRSDGSVHAYAPVEDTPA------EMARFISELESKEFLAAEKVIQAAYAHYAFVCIH 227
Query: 198 PFNDGNGRMSRLLTTLLLYRN 218
PF DGNGR++R L ++ LY++
Sbjct: 228 PFADGNGRVARALASVFLYKD 248
>gi|19554008|ref|NP_602010.1| hypothetical protein NCgl2720 [Corynebacterium glutamicum ATCC
13032]
Length = 454
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 34/201 (16%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIA--------GYRD 94
L+ +E AK + +NAIEGI T V T EQ++A + D
Sbjct: 49 LDAALERAKRAAAVDTNAIEGIFQTDRGFTHTV---ATQVGAWEQQMAMKGKHVKPAFDD 105
Query: 95 VLNIIHESFDAI----PLSQNYILQLHKILYSHMNNPMAGRIKSVQN-------YISAAY 143
L DA+ P+SQ +I LH ++ + VQN Y +
Sbjct: 106 TLEGFEYVLDAVTGRTPISQQWIRNLHAVILRSQESHEVFTAVGVQNQALQKGEYKTQPN 165
Query: 144 SDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFI------HDFLCIH 197
S ++ AP E + A E R I +E + +A I + F+CIH
Sbjct: 166 SPQRSDGSVHAYAPVEDTPA------EMARFISELESKEFLAAEKVIQAAYAHYAFVCIH 219
Query: 198 PFNDGNGRMSRLLTTLLLYRN 218
PF DGNGR++R L ++ LY++
Sbjct: 220 PFADGNGRVARALASVFLYKD 240
>gi|19881225|gb|AAM00837.1|AF486548_4 MloA [Campylobacter jejuni]
Length = 356
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 36/232 (15%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+ IE I+TT + L + R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELF-LSRVDENKLTRAAKEVKDYESALKKGYELLKK 104
Query: 106 IPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
L +N +IL++ K L + + NP+ G IK + + N + L
Sbjct: 105 EQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHI-----PPQNPNDIQELMG 159
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
L + + LD E + L+ + + + F IHPF DGNGR R++ L
Sbjct: 160 NLELYINDDNLD-------------EFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINIL 206
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
L G + L A I KNKD YY L + + E D++ +I+Y+L
Sbjct: 207 YLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVR-----DEGDILKWIEYIL 253
>gi|38232966|ref|NP_938733.1| hypothetical protein DIP0348 [Corynebacterium diphtheriae NCTC
13129]
gi|38199224|emb|CAE48854.1| Conserved hypothetical protein [Corynebacterium diphtheriae]
Length = 385
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/207 (28%), Positives = 88/207 (42%), Gaps = 16/207 (7%)
Query: 44 EKLVEIAKIQSTEASNAIEGIVTTST---RIKQLVKEKTTPKNRDEQEIAGYRDVLNIIH 100
E L ++ AS IE IVTT+ R V + TP + E Y L+
Sbjct: 73 EILTSTIPLREARASTEIENIVTTNDELFRAAWNVDAEPTPATK---EALRYNAALHAGL 129
Query: 101 ESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEI-LFTPLAPFE 159
ES PLS + L S + P I ++Y + HT+ ++TP E
Sbjct: 130 ESIGQRPLSAKTTQIVCGTLQS--DEP---HIAPFRSYPGTFIGNPHTQQRIYTPP---E 181
Query: 160 TSEALDKICEEYNRVIGN-MEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRN 218
E +++ + R I N +V+ L+ + + + F IHPF DGNGR R+L L L +
Sbjct: 182 GREVIEQHLSRWERYIYNEHDVDSLVKMALLHYQFEAIHPFTDGNGRTGRILNVLYLLQE 241
Query: 219 GFYVGKYISLEAKIAKNKDLYYDALGR 245
+ L I +NK YY L R
Sbjct: 242 ALLPFPVLYLSGYIVENKAQYYRCLNR 268
>gi|57168616|ref|ZP_00367748.1| MloA [Campylobacter coli RM2228]
gi|57019897|gb|EAL56577.1| MloA [Campylobacter coli RM2228]
Length = 356
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 64/239 (26%), Positives = 104/239 (43%), Gaps = 44/239 (18%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRI--KQLVKEKTTPKNRDEQEIAGYRDVLNIIHESF 103
L+ +Q + S+ IE I+TT + Q+ + K T R +E+ Y + L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELFLSQIDESKLT---RAAKEVKDYENALKKGYELL 102
Query: 104 DAIPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEI- 150
L +N +IL++ K L + + NP+ G IK + NH++I
Sbjct: 103 KKERLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIP-------PQNHSDIQ 155
Query: 151 -LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRL 209
L L + + LD E++ L+ + + + F IHPF DGNGR R+
Sbjct: 156 ELMRNLEQYINDDTLD-------------ELDFLVKMAIIHYQFESIHPFYDGNGRTGRI 202
Query: 210 LTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
+ L L G + L A I KNK YY L + + E ++ +I+Y+L V
Sbjct: 203 INILYLVYKGLLDLPILYLSAYIVKNKGEYYSLLQKVR-----DEGAILEWIEYILKGV 256
>gi|34580553|ref|ZP_00142033.1| hypothetical cell filamentation proteins (fic) [Rickettsia sibirica
246]
gi|28261938|gb|EAA25442.1| hypothetical cell filamentation proteins (fic) [Rickettsia sibirica
246]
Length = 322
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 75/306 (24%), Positives = 147/306 (48%), Gaps = 25/306 (8%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFD 104
KL + +I++ +S AIEG + +I ++ +K E++I ++ + + +
Sbjct: 38 KLRKNNQIKTIHSSLAIEGNSLSVEQITDIINDKRVLA--PEKDIVEVKNAIKLYNNLTI 95
Query: 105 AIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISA-AYSDNHTEILFTPLAPFETSEA 163
P +L+ H+IL M G ++ + A TEI++ AP T+
Sbjct: 96 FNPFKIESLLKAHEIL-------MQGLVEDNGKWRKGNAAIFKGTEIIY--FAP--TARR 144
Query: 164 LDKICEE-YNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV 222
+ + ++ + + + ++ ++ +F ++F IHPF+DGNGR+ RL LLL + +
Sbjct: 145 VSLLMQDLFEFIAQDKQISGIVKACIFHYEFEFIHPFSDGNGRIGRLWQQLLLMQAN-KI 203
Query: 223 GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALV 282
+YIS+E+ I N+ YY L + GE + FI+++L ++AA R +++
Sbjct: 204 FEYISVESLIRNNQSEYYSVLSKCD---KLGESTL--FIEFMLDKIVAALRLYSNNITY- 257
Query: 283 EIKLPALETVRRAALNKIGR-FTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKN 341
E P L + A +N I + F+++D + ++S ++ L + L +G KN
Sbjct: 258 EANTP-LSRMEFAKVNLIDQWFSRKDYITVHKNISTATASRDLLYGLERKLLISKGY-KN 315
Query: 342 ICYYRL 347
YY+
Sbjct: 316 QTYYKF 321
>gi|146302235|ref|YP_001196826.1| filamentation induced by cAMP protein Fic [Flavobacterium
johnsoniae UW101]
gi|146156653|gb|ABQ07507.1| filamentation induced by cAMP protein Fic [Flavobacterium
johnsoniae UW101]
Length = 317
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQEIAGYRDVLNII 99
L K+ E ++ T SN+IEG + + +++E T K R+ E + ++ +
Sbjct: 37 LHKIRESLSLEWTYNSNSIEGNTMSLRETQMVIQEGITIKGKSLREHFETHNHDKAIDYL 96
Query: 100 HESFD-AIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPF 158
+ D L IL +H ++ + + AGRI++ IS A F P
Sbjct: 97 YSIVDDNYKLRSIDILTIHGLVLRSIEDDFAGRIRNGGVRISGAN--------FMPPNAN 148
Query: 159 ETSEALDKICEEYN-RVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR 217
+ S+ LD++ + N +G ++E ++ H + IHPF DGNGR RL LLL R
Sbjct: 149 KVSDYLDELIDFINTNPLGLNDIE---LSTIYHHKLVWIHPFFDGNGRTVRLSMNLLLMR 205
Query: 218 NGFYVGKYISLEAKIAKN-KDLYYDALGRAQIG 249
GF A I KN + YY+AL +A G
Sbjct: 206 CGF-------PPAIILKNDRKKYYEALNQANNG 231
>gi|149196785|ref|ZP_01873838.1| filamentation induced by cAMP protein Fic [Lentisphaera araneosa
HTCC2155]
gi|149139895|gb|EDM28295.1| filamentation induced by cAMP protein Fic [Lentisphaera araneosa
HTCC2155]
Length = 451
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 18/243 (7%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHES 102
L L+E I S++ +EG TT+ K ++K K P+ DE+ I G ++ ++
Sbjct: 125 LNDLIEDEAISSSQ----LEGAATTTKIAKDMLKRKRKPRTPDEKMILGNFKMMQFTWQN 180
Query: 103 FDAIPLSQNYILQLHKILYSHMNNP--MAGRIKSVQNYISAAYSDNHTEILFTPLAPFET 160
LS + IL++HK+ +++ G +++ + + +D +T + TP
Sbjct: 181 RHK-ELSLDLILEIHKVGVEDIDDDHYFPGVLRNSDD-VEVVDADGNT--VHTPPPAEGL 236
Query: 161 SEALDKICEEYNRVIGNME----VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLY 216
+ L+K+ E N+ ++ + PL+ HPF DGNGR++R L L+
Sbjct: 237 EQRLEKLTEWTNQAHDDINSDSYLHPLLKAITLHFSIGYEHPFRDGNGRVARALFYWYLF 296
Query: 217 RNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFA 276
+N F +YI++ + + Y G++ + + D+ F+ Y V A +F
Sbjct: 297 KNDFSAFRYIAISLLLKQAPVKY----GKSYLYTETDDMDLTYFLDYQSDIVFRAINEFK 352
Query: 277 DRF 279
+ +
Sbjct: 353 NSY 355
>gi|56419279|ref|YP_146597.1| hypothetical protein GK0744 [Geobacillus kaustophilus HTA426]
gi|56379121|dbj|BAD75029.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 364
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 16/208 (7%)
Query: 39 RPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNI 98
RP L++ V+ KI+ T+ + ++ ++ T + ++ N D +E Y + L
Sbjct: 53 RPIMLKEAVQSTKIEGTQVT--LDEVMETEAQSRK--------ANSDVREALNYYEALVA 102
Query: 99 IHESFDAIPLSQNYILQLHKILYSH---MNNPMAGRIKSVQNYISAAYSDNHTEILFTPL 155
++ IP+S QLH+IL S+ ++ G + VQN++ T + P
Sbjct: 103 GMDALKEIPISTRLFKQLHRILLSNDVRGSHRSPGEFRRVQNFLGPEGCTIETAA-YIPP 161
Query: 156 APFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLL 215
P +E + + E+Y N + + L+ + + F IHPF DGNGR+ R+L L L
Sbjct: 162 EPHLVNEYMSNL-EKYIHE-PNDDYDELVRVAIIHAQFETIHPFLDGNGRIGRILIPLYL 219
Query: 216 YRNGFYVGKYISLEAKIAKNKDLYYDAL 243
Y G + + ++K YY L
Sbjct: 220 YSKGVIDYPNFFVSDVLERDKHKYYRYL 247
>gi|115359680|ref|YP_776818.1| filamentation induced by cAMP protein Fic [Burkholderia cepacia
AMMD]
gi|115284968|gb|ABI90484.1| filamentation induced by cAMP protein Fic [Burkholderia cepacia
AMMD]
Length = 373
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 13/117 (11%)
Query: 158 FETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHD------FLCIHPFNDGNGRMSRLLT 211
FE A ++ E +R + + P A P+ I F+ +HPF+DGNGR++R L
Sbjct: 168 FEAPPA-SRLTGEIHRFLAWLNASP--AEPLLIRAGLAHLWFVTLHPFDDGNGRIARALG 224
Query: 212 TLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
L+L R ++ SL A+I + ++ YYD L R Q G DV ++ + L T+
Sbjct: 225 DLVLARADGSPQRFYSLSAQIQRERNAYYDVLERTQ----RGSLDVTEWLAWFLNTL 277
>gi|29347923|ref|NP_811426.1| hypothetical protein BT_2513 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339825|gb|AAO77620.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 479
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/253 (23%), Positives = 116/253 (45%), Gaps = 38/253 (15%)
Query: 39 RPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQEIAGYRDV 95
+PE+L++ + K++ SN +EG T + K L+ T N +D +E+ +
Sbjct: 20 KPEDLKRWNDKFKLEFNYNSNHLEGNTLTYGQTKLLLMFGETSGNASLKDYEEMKAHNVG 79
Query: 96 LNII-HESFDA-IPLSQNYILQLHKIL-----YSHMNNP---------MAGRIKSVQNYI 139
L +I E+ D PL++++I +L++ + + + P G KS N +
Sbjct: 80 LEMIKQEAQDKERPLTESFIRELNRTILVQDYWKNAKTPDGQDIRMQIKVGEYKSRPNSV 139
Query: 140 SAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPF 199
A + +F+ +P ET + + + YN + P+ + + ++ IHPF
Sbjct: 140 LTATGE-----VFSYASPEETPAFMTSLVDWYNLEADKGILTPVELAALLHYRYIRIHPF 194
Query: 200 NDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQI--------GWH 251
DGNGR++RLL +L+R G+ + +++K Y + L + + G +
Sbjct: 195 EDGNGRIARLLVNFVLHRYGY------PMIVIHSEDKSNYLNILHQCDVEAGLTPSDGAN 248
Query: 252 EGEEDVVPFIKYL 264
D++PF+ YL
Sbjct: 249 ATLNDILPFVNYL 261
>gi|94313570|ref|YP_586779.1| filamentation induced by cAMP protein Fic [Ralstonia metallidurans
CH34]
gi|93357422|gb|ABF11510.1| filamentation induced by cAMP protein Fic [Ralstonia metallidurans
CH34]
Length = 384
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F+ +HPF+DGNGR++R + L+L R ++ SL A+I + ++ YYD L R Q +
Sbjct: 207 FVTLHPFDDGNGRIARAIGDLMLARADGSTQRFYSLSAQIQRERNAYYDILERTQ----K 262
Query: 253 GEEDVVPFIKYLLGTV 268
DV P++ + L T+
Sbjct: 263 DAMDVTPWLSWFLETL 278
>gi|88602994|ref|YP_503172.1| filamentation induced by cAMP protein Fic [Methanospirillum
hungatei JF-1]
gi|88188456|gb|ABD41453.1| filamentation induced by cAMP protein Fic [Methanospirillum
hungatei JF-1]
Length = 380
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 77/297 (25%), Positives = 118/297 (39%), Gaps = 36/297 (12%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAI---PLSQNYIL 114
S IEG V T I L E + D +I + + + F+ + P++ + +
Sbjct: 74 SAQIEGTVATFYGI--LAYEADVSFDDDPNQIREVTNYMKALQTGFERVKNEPITLSLLC 131
Query: 115 QLHKILYSHMNNPMA--GRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYN 172
LH+IL + + A G I+ +QN I D+ + + P P E L E N
Sbjct: 132 DLHRILLTKVRGSKALPGMIRPIQNQIGG---DSLYKARYIP-PPQENVRFLLNNLE--N 185
Query: 173 RVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKI 232
+ + PLI + F IHPF DGNGR+ RLL +L L ++L +
Sbjct: 186 FIAEEKTIPPLIVSALIHGQFKMIHPFLDGNGRIGRLLISLYLCWRQVLAKPTLNLSYYL 245
Query: 233 AKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETV 292
+N+ YYD L E D+ ++K+ L V+ D + +I E V
Sbjct: 246 KRNRSEYYDRLFSL-----EKNGDLEGWVKFFLQGVIEVSTD--SHHLVKKIITLERELV 298
Query: 293 RRAALNKIG---------------RFTKQDIRELCPSLSISSIEGGLRKLVSAGELK 334
+R IG T DI C +SI + +RK AG +K
Sbjct: 299 KRVIYENIGGIHGARMIELLFMKTMVTSTDISTHC-GVSIQTANNLVRKFEEAGIVK 354
>gi|121541804|ref|ZP_01673548.1| conserved hypothetical protein [Candidatus Desulfococcus oleovorans
Hxd3]
gi|121518242|gb|EAX55106.1| conserved hypothetical protein [Candidatus Desulfococcus oleovorans
Hxd3]
Length = 336
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 60/231 (25%), Positives = 108/231 (46%), Gaps = 30/231 (12%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNII--HES 102
+L + +I++ S AIEG + +I +++ K E R+V N + ++
Sbjct: 40 RLRRVNRIRTIRGSLAIEGNTLSEAQITAILEGKRVIAPPRE-----VREVKNALAAYDR 94
Query: 103 FDAI-PLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYS--DNHTEILFTPLAPFE 159
FD P ++ +L+ H+IL M+G I Y + I P A
Sbjct: 95 FDTWKPEAEKDLLEAHRIL-------MSGLIDEAGLYRHGGVGVMEGQQVIHMAPAA--- 144
Query: 160 TSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR-N 218
+ + ++ + + + PLIA +F ++F IHPF DGNGR+ RL +L+L R N
Sbjct: 145 --KRVPRLMGDLFSWLAVTDTHPLIASSIFHYEFEFIHPFADGNGRVGRLWQSLILSRWN 202
Query: 219 GFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVL 269
+ +I +E+ + +++ YY+AL + + D PFI ++L +L
Sbjct: 203 PLFA--HIPVESMVFEHQVEYYEALQEST-----RKADSSPFISFMLRMIL 246
>gi|77543217|gb|ABA87028.1| hypothetical protein [Vibrio cholerae]
Length = 368
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 21/223 (9%)
Query: 58 SNAIEGIVTTSTRIKQ-------LVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQ 110
S+AIEG + ++ L +EK P + G +++ E+ D++ LS
Sbjct: 59 SSAIEGEKLNAFSVRSSLANKLGLSEEKPFPTT---ERTDGLAEIMLDAVENLDSL-LSL 114
Query: 111 NYILQLHKIL----YSHMNNPMAGRIKSVQNY-ISAAYSDNHTEILFTPLAPFETSEALD 165
ILQ HK L Y+ N + G+++ + + + D T P SE LD
Sbjct: 115 ERILQWHKRLFPEGYTLFNPVIGGQLRGDEPMQVVSGRIDKPTVHFEAPSRDVLESE-LD 173
Query: 166 KICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKY 225
+N + ++PL+ + F+ +HP +DGNGR++RLLT L L + ++
Sbjct: 174 VFIRWFNDSREDPALDPLLRAAITHFWFVTLHPLDDGNGRITRLLTDLALAQAERQSVRF 233
Query: 226 ISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
++ I N+ YY+ L ++Q +GE D+ ++ + L T+
Sbjct: 234 YAMSVAILANRKSYYEILEQSQ----KGELDITAWLMWFLNTL 272
>gi|86739386|ref|YP_479786.1| filamentation induced by cAMP protein Fic [Frankia sp. CcI3]
gi|86566248|gb|ABD10057.1| filamentation induced by cAMP protein Fic [Frankia sp. CcI3]
Length = 398
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 60/237 (25%), Positives = 107/237 (45%), Gaps = 20/237 (8%)
Query: 17 GTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVK 76
GT +A + G+ + +Q PE L + ++ ++++A+EG + L
Sbjct: 48 GTWRNVARAGRALGRLDQAGRQIPEPALLLQPTLRTEA-QSTSALEGTFAPLEDV--LAA 104
Query: 77 EKTTPKNRDEQEIAGYRDVLNIIHES-------FDAIPLSQNYILQLHKILY--SHMNNP 127
E T P ++ E+ R+VLN + + D PL+ + Q+H+ L + +
Sbjct: 105 EVTEPTSQSEE----VREVLNYVRAAEAAFAWIGDGRPLTVAALCQVHRDLVRGTPADTR 160
Query: 128 MAGRIKSVQNYISAAYSDNHTEILFTPLAP-FETSEALDKICEEYNRVIGNMEVEPLIAI 186
AGRI+S+Q I + T F P P E A+ + + + + ++P++A
Sbjct: 161 DAGRIRSIQVAIGSRGGAIDTA-RFVPSPPGLELDAAVRDLLDWIT--VDSKSIDPVVAA 217
Query: 187 PVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
+ + F +HPFNDGNGR+ RLL L L G +++ ++ Y D L
Sbjct: 218 AMAHYQFETLHPFNDGNGRIGRLLVVLDLCWKGILSEPLLAVSPWFEVRREEYQDHL 274
>gi|78060744|ref|YP_367319.1| Filamentation induced by cAMP protein, Fic [Burkholderia sp. 383]
gi|77965294|gb|ABB06675.1| Filamentation induced by cAMP protein, Fic [Burkholderia sp. 383]
Length = 386
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 180 VEPLIAIPVFIHD-FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDL 238
VEPL+ H F+ +HPF+DGNGR++R L L+L R ++ SL A+I + ++
Sbjct: 205 VEPLLIRAGLAHLWFVTLHPFDDGNGRIARALGDLVLARADRSPQRFYSLSAQIQRERNA 264
Query: 239 YYDALGRAQIGWHEGEEDVVPFIKYLL 265
YYD L R Q G DV ++ + L
Sbjct: 265 YYDVLERTQ----RGSLDVTEWLAWFL 287
>gi|51245038|ref|YP_064922.1| hypothetical protein DP1186 [Desulfotalea psychrophila LSv54]
gi|50876075|emb|CAG35915.1| hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 354
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 8/100 (8%)
Query: 179 EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR-NGFYVGKYISLEAKIAKNKD 237
E PLI VF ++F IHPF DGNGRM RL +L+L + +V Y+ +E+ + +++
Sbjct: 183 EDHPLIKSCVFHYEFEFIHPFADGNGRMGRLWQSLILSAWHELFV--YLPVESLVHQHQS 240
Query: 238 LYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFAD 277
YY AL + + D PFI ++LG +L + + D
Sbjct: 241 EYYRALNAST-----EQADSAPFISFMLGVILDSLQLLID 275
>gi|157084870|gb|ABV14548.1| hypothetical protein CKO_03468 [Citrobacter koseri ATCC BAA-895]
Length = 366
Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 8/195 (4%)
Query: 36 LKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDV 95
L R E K + ++ S+ +EG TT+ + +++ P+ DE IAG +
Sbjct: 41 LTTRLREAGKELTALSMEEPITSSQLEGANTTTLVARDMLESGRAPRTEDEHMIAGNARL 100
Query: 96 LNIIHESFDAIPLSQNYILQLHKILYSHMNNPM--AGRIKSVQNYISAAYSDNHTEILFT 153
+ I E PL+ + I + H I +N+ G + + + A Y N I+
Sbjct: 101 MAEIPELIQE-PLTPDLIRRFHAIGMGGINDEKYSPGEFRDTDDVVIADYDGN---IVHQ 156
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
P A + L +C+ N V PL V + HPF DGNGR SR L
Sbjct: 157 PPAATDLQARLQMVCDFVNDT--ESYVHPLAKACVLHFMLVHEHPFRDGNGRTSRGLFYW 214
Query: 214 LLYRNGFYVGKYISL 228
+ ++ + V KY+S+
Sbjct: 215 YMLKSEYDVFKYVSI 229
>gi|69937544|ref|ZP_00632178.1| Filamentation induced by cAMP protein Fic [Paracoccus denitrificans
PD1222]
gi|119386022|ref|YP_917077.1| filamentation induced by cAMP protein Fic [Paracoccus denitrificans
PD1222]
gi|119376617|gb|ABL71381.1| filamentation induced by cAMP protein Fic [Paracoccus denitrificans
PD1222]
Length = 393
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 8/189 (4%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDE-QEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
S+ IEG +T T + + E + D+ +E++ Y D + E + +PLS I ++
Sbjct: 81 SSQIEGTQSTLTDLLRFETEAQAGEPIDDIREVSNYVDAMMYGLERLEELPLSLRLIREM 140
Query: 117 H-KILYSHMNNPMA-GRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
H ++L S + + G + QN+I + N L+ P E LD + E +
Sbjct: 141 HARLLQSGRGDTKSPGDFRRSQNWIGGSRPGN---ALYVPPPVTELDACLDAL-ERFIHE 196
Query: 175 IGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAK 234
G+ ++ LI + F IHPF DGNGR+ RLL TL L NG + L +
Sbjct: 197 DGS-QLPALIKAGLLHVQFETIHPFLDGNGRIGRLLVTLYLCVNGVLRKPLLYLSLYLKT 255
Query: 235 NKDLYYDAL 243
++ YY L
Sbjct: 256 HRADYYRLL 264
>gi|72384673|gb|AAZ67628.1| hypothetical protein [Haemophilus parasuis]
Length = 261
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 6/192 (3%)
Query: 52 IQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQN 111
+Q + S+ IE IVTT + Q + +E+ Y +++ F + S
Sbjct: 55 LQEAKESSEIENIVTTQDDLYQSNYATQQFASGAAKEVHYYVQAMSL---GFHEVQKSGL 111
Query: 112 YILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEY 171
L L K + + + AG K + + E+++ P ++ E L E +
Sbjct: 112 ITLNLIKEIQRELEDNNAGFRKQAG---TGLVNQTTQEVVYMPPQTYDEIENLMAGLERF 168
Query: 172 NRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAK 231
M+ +PL+ + + H F IHPF DGNGR R++ L L + G + L
Sbjct: 169 INDSEQMDYDPLVKMALIHHQFESIHPFYDGNGRTGRIINILYLIQQGLLDTPVLYLSRY 228
Query: 232 IAKNKDLYYDAL 243
I +NK YY L
Sbjct: 229 INRNKGEYYQLL 240
>gi|83745589|ref|ZP_00942647.1| Fic family protein [Ralstonia solanacearum UW551]
gi|83727666|gb|EAP74786.1| Fic family protein [Ralstonia solanacearum UW551]
Length = 372
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F+ +HPF+DGNGR++R + L L R ++ SL A+I + + YYD L R Q +
Sbjct: 207 FVTLHPFDDGNGRIARAVGDLFLARADGSPQRFYSLSAQIQRERKDYYDVLERTQ----K 262
Query: 253 GEEDVVPFIKYLLGTVLAA 271
G DV ++ + LGT+ +A
Sbjct: 263 GTLDVTGWLSWFLGTLGSA 281
>gi|156718631|ref|ZP_02060293.1| filamentation induced by cAMP protein Fic [Hydrogenobaculum sp.
Y04AAS1]
gi|156711057|gb|EDO51404.1| filamentation induced by cAMP protein Fic [Hydrogenobaculum sp.
Y04AAS1]
Length = 374
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 33/214 (15%)
Query: 49 IAKIQSTEA--SNAIEGIVTTSTRIKQLVKEKT--TPKN------RDEQEIAGYRDVLNI 98
+A + + EA S+ IEG T T + ++KE+ TPKN D +E+ Y+ L
Sbjct: 50 LAPLATNEAVLSSKIEG---TQTTFEDVLKEEAGITPKNISQSLREDLKEVLNYKKALIY 106
Query: 99 IHESFDAIPLSQNYILQLHKILYSHMNNP--MAGRIKSVQNYISAAYSDNHTEILFTPLA 156
++ + L+ + I +L KIL + + + G + QN+I + S + + P
Sbjct: 107 GSQAIEYRDLTLSLIKELQKILLTDVRGKYRLLGEFRKSQNWIGSPGS-SMENARYVPPD 165
Query: 157 PFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLLL 215
P E L E + + + + + I +H F +HPF DGNGR+ RL+ L L
Sbjct: 166 PIILPEHL----EYWEKFLKSDDYPDKIVQLGLLHAQFEILHPFEDGNGRVGRLIIPLFL 221
Query: 216 Y------RNGFYVGKYISLEAKIAKNKDLYYDAL 243
Y R FY+ +Y+ KN+ YYD L
Sbjct: 222 YWKSLISRPSFYLSEYLE------KNRTEYYDRL 249
>gi|148323912|gb|EDK89162.1| hypothetical protein FNP_1379 [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 353
Score = 59.3 bits (142), Expect = 4e-07, Method: Composition-based stats.
Identities = 72/316 (22%), Positives = 141/316 (44%), Gaps = 36/316 (11%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRI--KQLVKEKTTPKNRDEQEIAGYRDVLNI-IHES 102
++ + ++ + S+ IE I+TT + + ++K+K+ N + +E+ Y+ +N+ H
Sbjct: 46 ILNVITLKEAKESSEIENIITTYDELYKEMILKDKS---NLNAKEVLNYKSAINLGNHLV 102
Query: 103 FDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSE 162
+ ++ N I ++H H+ P G I+ + + EIL P +E
Sbjct: 103 QEKNMITTNMINEIH-----HLIEPNKGDIRKQGG--TVIMNTRTGEILHIPPQNYEEIM 155
Query: 163 ALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYV 222
K E++ + ++ PLI + + F IHP+ DGNGR R+L + L +
Sbjct: 156 EYLKNLEDFINL--EDKINPLIKMALIHLQFEMIHPYYDGNGRTGRVLNLMYLKLSDKLD 213
Query: 223 GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALV 282
+ L I +N+ YY+ L +A + ++D++ FI Y+L + + L+
Sbjct: 214 TPILYLSKYIIENRSEYYNLLNKAG----KSKKDILEFIIYMLKAIEKTSK---YTLTLI 266
Query: 283 EIKLPALETVRRAALNKIGRFTKQDIRELC------------PSLSIS--SIEGGLRKLV 328
+ + A+ ++ +K+ + +D+ EL L+IS + L++L
Sbjct: 267 DNIIDAMNNTKKILKDKLPKIYSKDLLELLFFEFYTKNEYIRTKLNISRQTATSYLKQLE 326
Query: 329 SAGELKREGSGKNICY 344
G L E GK I Y
Sbjct: 327 EVGILSSEKIGKEIIY 342
>gi|19881274|gb|AAM00878.1|AF486556_4 MloA [Campylobacter jejuni]
Length = 356
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 36/232 (15%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+ IE I+TT + L + R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELF-LSRVDENKLTRAAKEVKDYESALKKGYELLKK 104
Query: 106 IPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
L +N +IL++ K L + + NP+ G IK + + N + L
Sbjct: 105 EQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHI-----PPQNPNDIQELMG 159
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
L + ++LD E + L+ + + + F IHPF D NGR R++ L
Sbjct: 160 NLELYINDDSLD-------------EFDFLVKMAIIHYQFESIHPFYDSNGRTGRIINIL 206
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
L G + L A I KNKD YY L + + E D++ +I+Y+L
Sbjct: 207 YLVYKGLLDFPILYLSAYIVKNKDEYYKLLQKVR-----DEGDILKWIEYIL 253
>gi|148262509|ref|YP_001229215.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
gi|146396009|gb|ABQ24642.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
Length = 417
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 61/223 (27%), Positives = 97/223 (43%), Gaps = 22/223 (9%)
Query: 40 PEELE-KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKE--KTTPKNRDEQ-EIAGYRDV 95
PE + + E+ +I ++ SN IEG T I++ ++ + P R+ Q E + D
Sbjct: 47 PEATQISMRELLRIINSYYSNMIEGNSTHPIDIERATRKDYSSDPAKRNRQIESVAHIDC 106
Query: 96 LNIIHESF----DAIPLSQNYILQLHKILYSHM--------NNPMAGRIKSVQNYISAAY 143
I E D S +++ +HKI Y + N +++ V I A
Sbjct: 107 QRQIEERLAREPDVAITSPDFLCWVHKIFYDQLPDELRWVRNEETGKKLEVVGGEIRTA- 165
Query: 144 SDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGN 203
D P A F LD+ + Y + V P+I + H + IHPF DGN
Sbjct: 166 -DVRVGTHVGP-ASFCLQAFLDRFHQRYG--TQSHGVHPIITVAASHHRLMWIHPFMDGN 221
Query: 204 GRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRA 246
GR++RL T R G + ++ +A+N+D YY+AL A
Sbjct: 222 GRVARLYTDAAFRRILPGYGIW-NVSRGLARNRDSYYNALSHA 263
>gi|95930312|ref|ZP_01313049.1| filamentation induced by cAMP protein Fic [Desulfuromonas
acetoxidans DSM 684]
gi|95133564|gb|EAT15226.1| filamentation induced by cAMP protein Fic [Desulfuromonas
acetoxidans DSM 684]
Length = 365
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 181 EPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYY 240
+P+IA + F+ IHPF+DGNGR++R + +LL R+ ++ S+ +I + + YY
Sbjct: 189 DPVIAAAIAHFWFVTIHPFDDGNGRLARAIADMLLARSEQSPLRFYSMSTRIQQERKEYY 248
Query: 241 DALGRAQIGWHEGEEDVVPFIKYLLG 266
D L R Q +G+ D+ ++++ LG
Sbjct: 249 DILERCQ----KGDLDISLWVEWFLG 270
>gi|17548130|ref|NP_521532.1| hypothetical protein RSc3413 [Ralstonia solanacearum GMI1000]
gi|17430437|emb|CAD16910.1| conserved hypothetical protein [Ralstonia solanacearum]
Length = 371
Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F+ +HPF+DGNGR++R L LLL R ++ SL A+I + + YYD L R Q +
Sbjct: 207 FVTLHPFDDGNGRIARALGDLLLARADGSPQRFYSLSAQIQRERKDYYDMLERTQ----K 262
Query: 253 GEEDVVPFIKYLLGTV 268
G DV ++ + LG +
Sbjct: 263 GTLDVTGWLAWFLGAL 278
>gi|149195894|ref|ZP_01872950.1| hypothetical protein LNTAR_22149 [Lentisphaera araneosa HTCC2155]
gi|149140741|gb|EDM29138.1| hypothetical protein LNTAR_22149 [Lentisphaera araneosa HTCC2155]
Length = 368
Score = 58.5 bits (140), Expect = 5e-07, Method: Composition-based stats.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 7/170 (4%)
Query: 55 TEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQEIAGYRDVLNIIHESFDAIPLSQN 111
T S +IEG + ++ E T R+ EIAG+ + +++ + LS++
Sbjct: 138 THDSTSIEGNTLSLGETSFILNEGLTVSGKSLREHDEIAGHARAIELVYSIYRDEKLSED 197
Query: 112 YILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEY 171
I LH+ + + + + + + + + AY + +PLA T ++ +E+
Sbjct: 198 KIFDLHRAMMINPDFDVQKPVGAWKREENGAYWGREYMLYPSPLA---TPNLMEIWLKEF 254
Query: 172 NRVIGNMEVEPLIAIPVFIHD-FLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
N + ++++ I +H F C+HPF DGNGRM+RLL + + R+G+
Sbjct: 255 NALPRKLDLQQAILAYSRLHILFACVHPFYDGNGRMARLLANIPVLRSGY 304
>gi|19881262|gb|AAM00868.1|AF486554_4 MloA [Campylobacter jejuni]
Length = 356
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 60/232 (25%), Positives = 99/232 (42%), Gaps = 36/232 (15%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+ IE I+TT + L + R +E+ Y L +E
Sbjct: 46 LINALILQEAKDSSEIENIITTHDELF-LSRVDENKLTRAAKEVKDYESALKKGYELLKK 104
Query: 106 IPLSQN-YILQLHKILYSH-----------MNNPMAGRIKSVQNYISAAYSDNHTEILFT 153
L +N +IL++ K L + + NP+ G IK + + N+ + L
Sbjct: 105 EQLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHI-----PPQNPNNIQELMG 159
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
L + ++LD E + L+ I + + F IHPF DGN R R++ L
Sbjct: 160 NLELYINDDSLD-------------EFDFLVKIAIIHYQFESIHPFYDGNDRTGRIINIL 206
Query: 214 LLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
L G + L A I K+KD YY L + + E D++ +I+Y+L
Sbjct: 207 YLVYKGLLDFPILYLSAYIVKSKDEYYKLLQKVR-----DEGDILKWIEYIL 253
>gi|110601510|ref|ZP_01389693.1| Filamentation induced by cAMP protein Fic [Geobacter sp. FRC-32]
gi|110547760|gb|EAT61003.1| Filamentation induced by cAMP protein Fic [Geobacter sp. FRC-32]
Length = 373
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 80/197 (40%), Gaps = 18/197 (9%)
Query: 85 DEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHM--NNPMAGRIKSVQNYISAA 142
D E++ Y D +N E +PLS I ++H L S + + G ++ QN+I
Sbjct: 109 DINEVSNYVDAMNYGLEWLRELPLSLRLIKEIHARLMSGIRGGHKSPGEFRTTQNWIGGT 168
Query: 143 YSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDG 202
N F P E L E + + + V PL+ + F IHPF DG
Sbjct: 169 RPGNAA---FVPPLANELLSCLG----ELEKFLHDETVPPLLKAGLAHAQFETIHPFLDG 221
Query: 203 NGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALG--RAQIGWHEGEEDVVPF 260
NGRM RLL +L + + L K++ YY+ L R W EG +
Sbjct: 222 NGRMGRLLIAFILCHDQVLEKPLLYLSLFFKKHRQEYYERLNAVRKDGDW-EG------W 274
Query: 261 IKYLLGTVLAAYRDFAD 277
IKY L V + D
Sbjct: 275 IKYYLQGVYEISKQATD 291
>gi|149195902|ref|ZP_01872958.1| Filamentation induced by cAMP protein Fic [Lentisphaera araneosa
HTCC2155]
gi|149140749|gb|EDM29146.1| Filamentation induced by cAMP protein Fic [Lentisphaera araneosa
HTCC2155]
Length = 240
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 21/208 (10%)
Query: 43 LEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN--RDEQEIAGYRDVLNIIH 100
L+ L + ++ T SNAIEG T K +++ T R+ E +++ + +
Sbjct: 23 LKSLHDQLVLEWTYNSNAIEGNTLTIKETKVVLEGITIGGKLMREHFEAINHKEAIMYVE 82
Query: 101 ESFDA-IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFE 159
+ + P S + I +H+++ +++N AG+ +S IS A P F+
Sbjct: 83 DLLSSKTPFSDSCIKSIHQLVLKNIDNENAGKYRSENVIISGAEH--------RPPEHFD 134
Query: 160 TSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNG 219
+ + E YN+ PL DF+ +HPF DGNGR +RLL L ++
Sbjct: 135 VPSQMTDLLESYNQ----SNHHPLEKAARLHTDFVKVHPFIDGNGRTARLLMNFELIKS- 189
Query: 220 FYVGKYISLEAKIAKNKDLYYDALGRAQ 247
Y+ + K A+N+ YY+AL +A
Sbjct: 190 ----SYLPVIIK-AENRLQYYEALDKAH 212
>gi|68553070|ref|ZP_00592452.1| Filamentation induced by cAMP protein Fic [Prosthecochloris
aestuarii DSM 271]
gi|68240081|gb|EAN22360.1| Filamentation induced by cAMP protein Fic [Prosthecochloris
aestuarii DSM 271]
Length = 361
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 68/269 (25%), Positives = 111/269 (41%), Gaps = 27/269 (10%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ +Q + S+AIE I+TT+ +L K++ P R+ + + F+
Sbjct: 48 LINTLSLQEAKDSSAIESIITTN---DELFKDELFPDFARSAAAKEVRNYVMALRTGFER 104
Query: 106 IP----LSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETS 161
+ L+ N IL +H L H N R+ + ++ EI++TP ++T
Sbjct: 105 VQKDRLLTANTILTIHAELERH--NSGFRRLPGTE-----LKNEQSGEIVYTPPQKYDTI 157
Query: 162 EALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFY 221
L + E + +++PLI + + + F IHPF DGNGR R++ L L
Sbjct: 158 VDLMRNLESFINDDTVSDIDPLIKVAIIHYQFESIHPFYDGNGRTGRIINVLYLVLKERL 217
Query: 222 VGKYISLEAKIAKNKDLYYDALG--RAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRF 279
+ L I + K YY L R W E +I Y+L + R
Sbjct: 218 DIPVLYLSRYIIRTKQDYYRLLQDVRDTGAWEE-------WILYILTGIEQTSR---QTI 267
Query: 280 ALVEIKLPALETVRRAALNKIGRFTKQDI 308
+V+ AL T + N RF QD+
Sbjct: 268 RIVQDIQQALMTYKHQIRNDF-RFYSQDL 295
>gi|91786226|ref|YP_547178.1| filamentation induced by cAMP protein Fic [Polaromonas sp. JS666]
gi|91695451|gb|ABE42280.1| filamentation induced by cAMP protein Fic [Polaromonas sp. JS666]
Length = 398
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 57/194 (29%), Positives = 83/194 (42%), Gaps = 16/194 (8%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKT---TPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYIL 114
S+ IEG +T + + T TPK D +E+ Y +N + +PLS +
Sbjct: 77 SSQIEGTQSTLEDVLAFEAQGTSNDTPK--DVEEVINYVRAMNHGLRRLNELPLSLRLLK 134
Query: 115 QLHKILYSHM--NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEAL---DKICE 169
++H L ++ G ++ QN+I +A S F P P E AL +K
Sbjct: 135 EIHGELMQNVRGGEKTPGEFRTSQNWIGSAGS-TLANASFVPPPPHELMNALGMLEKFLH 193
Query: 170 EYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLE 229
E G V LI + F IHPF DGNGR+ RLL TL+L + L
Sbjct: 194 E-----GKSTVPLLIRCGLAHAQFETIHPFLDGNGRVGRLLITLILCEEQALSRPLLYLS 248
Query: 230 AKIAKNKDLYYDAL 243
+ ++ YYD L
Sbjct: 249 VFLKAHRSEYYDRL 262
>gi|39995279|ref|NP_951230.1| Fic family protein [Geobacter sulfurreducens PCA]
gi|39982041|gb|AAR33503.1| Fic family protein [Geobacter sulfurreducens PCA]
Length = 388
Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats.
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 11/171 (6%)
Query: 75 VKEKTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHM--NNPMAGRI 132
++ K++P D E++ Y D +N E +PLS I ++H L + + + G
Sbjct: 101 IEGKSSPD--DINEVSNYVDAMNYGLERLQELPLSLRLIKEIHARLMAGIRGGHKSPGEF 158
Query: 133 KSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHD 192
++ QN+I N F P E L + + + + V PL+ +
Sbjct: 159 RTSQNWIGGTRPGNAA---FVPPPANEVVTCLGDL----EKFLHDESVPPLLKAGLAHAQ 211
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
F IHPF DGNGRM RLL +L + + L K++ YY+ L
Sbjct: 212 FETIHPFLDGNGRMGRLLIAFILCHDQVLEKPLLYLSLFFKKHRQEYYERL 262
>gi|111017023|ref|YP_699995.1| hypothetical protein RHA1_ro00001 [Rhodococcus sp. RHA1]
gi|110816553|gb|ABG91837.1| conserved hypothetical protein [Rhodococcus sp. RHA1]
Length = 396
Score = 58.2 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 86 EQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYS--HMNNPMAGRIKSVQNYISAAY 143
+ ++A + ++ ++ + D P++ + +L H++L + + +GR + VQN+I +
Sbjct: 113 KSQLAAVKALIAMVDAAGDG-PITGDTLLGAHRLLMAPDYYTARDSGRFRDVQNWIGGS- 170
Query: 144 SDNHTEI--LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFL-CIHPFN 200
++T I LF P P E L + E NR P++A H L IHPF
Sbjct: 171 --DYTPIDALFVPPPPELVDELLADLLEFANRTD-----LPILAQAAIAHAQLESIHPFT 223
Query: 201 DGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPF 260
DGNGR+ R L + +L R + L + + + Y+D L R + G +G F
Sbjct: 224 DGNGRIGRALISAILRRRRLTHRVTVPLASVMLADTRRYFDHLTRYRAGDADG------F 277
Query: 261 IKYL 264
++Y+
Sbjct: 278 VEYV 281
>gi|111024233|ref|YP_707205.1| conserved hypothetical protein, Fic family [Rhodococcus sp. RHA1]
gi|110823763|gb|ABG99047.1| conserved hypothetical protein, Fic family protein [Rhodococcus sp.
RHA1]
Length = 405
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 20/184 (10%)
Query: 86 EQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYS--HMNNPMAGRIKSVQNYISAAY 143
+ ++A + ++ ++ + D P++ + +L H++L + + +GR + VQN+I +
Sbjct: 122 KSQLAAVKALIAMVDAAGDG-PITGDTLLGAHRLLMAPDYYTARDSGRFRDVQNWIGGS- 179
Query: 144 SDNHTEI--LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFL-CIHPFN 200
++T I LF P P E L + E NR P++A H L IHPF
Sbjct: 180 --DYTPIDALFVPPPPELVDELLADLLEFANRTD-----LPILAQAAIAHAQLESIHPFT 232
Query: 201 DGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPF 260
DGNGR+ R L + +L R + L + + + Y+D L R + G +G F
Sbjct: 233 DGNGRIGRALISAILRRRRLTHRVTVPLASVMLADTRRYFDHLTRYRAGDADG------F 286
Query: 261 IKYL 264
++Y+
Sbjct: 287 VEYV 290
>gi|150026196|ref|YP_001297022.1| hypothetical protein FP2159 [Flavobacterium psychrophilum JIP02/86]
gi|149772737|emb|CAL44220.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 385
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 56/229 (24%), Positives = 101/229 (44%), Gaps = 10/229 (4%)
Query: 40 PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNII 99
P+ +L I + S IEG TT + E + D +EI + +
Sbjct: 43 PKVFFQLKHIFHTLESIGSARIEGNNTTIAEYIETKLEDNKNVSSDIKEIQNIEKAMEFV 102
Query: 100 HESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQN-YISAAYSDNHTEILFTPLAPF 158
++ P+++ ++ +LHK++ + P G S Y N + L P
Sbjct: 103 EDNILDYPINKMFLSELHKMIVDGLLPPPNGEGDSTPGLYRGINLKINKSNHL--PPDYL 160
Query: 159 ETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRN 218
++ + ++ + R + L+ + H F+ IHPF +GNGR RL T +L +
Sbjct: 161 VVNDYMIELLDFIER--KDSPKYDLLKAAIAHHRFVWIHPFGNGNGRTVRLFTYAMLVKT 218
Query: 219 GF--YVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
GF VG+ I+ A N++ YY+ L +A +G EG ++ + +Y+L
Sbjct: 219 GFNVNVGRIINPTAVFCSNRNDYYEKLSKADLGTEEG---ILEWCEYVL 264
>gi|146328187|emb|CAM58104.1| hypothetical protein [uncultured marine microorganism]
Length = 384
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 12/211 (5%)
Query: 36 LKQRPEELEK---LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGY 92
LKQ E + LV + +AS+ IE IVTT+ ++ + + +E Y
Sbjct: 42 LKQAAELIPNAAVLVNALPLLEAQASSEIENIVTTTDKLFEFADINEDKADVATKEALRY 101
Query: 93 RDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILF 152
R L + L+ + +Q+ + + S++N S E+++
Sbjct: 102 RSALFEGSKMVRRGMLTTDIAIQICSTIKDIDLDIRDDSATSLKNRASG-------EVIY 154
Query: 153 TPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTT 212
TP P ++K+ + N +++PL+ + V + F IHPF+DGNGR R+L
Sbjct: 155 TP--PVGQELLIEKLNNWQAFMHDNTDIDPLVRMAVQHYQFEAIHPFSDGNGRTGRILNI 212
Query: 213 LLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
L L G + L + +NK YY L
Sbjct: 213 LFLVEQGLLSTPILYLSRHVIRNKGDYYRLL 243
>gi|91201851|emb|CAJ74911.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 205
Score = 58.2 bits (139), Expect = 9e-07, Method: Composition-based stats.
Identities = 45/126 (35%), Positives = 59/126 (46%), Gaps = 8/126 (6%)
Query: 177 NMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNK 236
++ V LI I + + F IHPF DGNGR+ RLL TL L + L KNK
Sbjct: 19 DIHVPALIRIGIAHYQFETIHPFLDGNGRIGRLLITLYLVSKKILQQPLLYLSVFFEKNK 78
Query: 237 DLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAA 296
LYYD L R + + D++ ++KY L V R ++ L EI L E V
Sbjct: 79 SLYYDNLTRVR-----EKNDLIHWLKYFLTGVDETARQASN--TLSEI-LKLKENVENTL 130
Query: 297 LNKIGR 302
N GR
Sbjct: 131 RNTAGR 136
>gi|21229533|ref|NP_635450.1| hypothetical protein XCC0055 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66766405|ref|YP_241167.1| hypothetical protein XC_0055 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21110999|gb|AAM39374.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66571737|gb|AAY47147.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 382
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 14/179 (7%)
Query: 44 EKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESF 103
E L+ A Q ++ +EG T T + T D +E+ Y + E
Sbjct: 63 EWLIYSAVRQEALLTSQLEGTQATLTDVFDEEAGLTVANADDVEEVTNYLQAFKFVREQL 122
Query: 104 DA---IPLSQNYILQLHKILYSHMNNPMA--GRIKSVQNYISAAYSDNHTEILFTPLAPF 158
A +P+S + + H+IL + + A G +++ QN+I N F P
Sbjct: 123 QAPTGLPISLRLLAEAHRILLAGVRGAHALPGSMRTSQNWIGGTRPGNAA---FVP---- 175
Query: 159 ETSEALDKICEEYNRVIGNME--VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLL 215
+E L ++ + R I + + PL+ I + F IHPF DGNGR+ RLL LL
Sbjct: 176 PPAERLAEVFGDLERFIHDTRPTLPPLVRIALVHAQFETIHPFLDGNGRIGRLLIAALL 234
>gi|42560744|ref|NP_975195.1| Conserved hypothetical protein, Fic protein family [Mycoplasma
mycoides subsp. mycoides SC str. PG1]
gi|42492240|emb|CAE76837.1| Conserved hypothetical protein, Fic protein family [Mycoplasma
mycoides subsp. mycoides SC str. PG1]
Length = 306
Score = 57.8 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 61/220 (27%), Positives = 101/220 (45%), Gaps = 26/220 (11%)
Query: 31 KQEMYLKQRP---EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQ 87
++++ RP EE ++L E I T +NAIEG T ++K+ T + Q
Sbjct: 62 RKKIIYSYRPLSKEETKRLYEEFLIDYTYNTNAIEGSTLTERETYLILKKGVTIDGKSLQ 121
Query: 88 ---EIAGYRDVLNIIHESFDA-IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAY 143
+ G+++ ++ + + +SQ I +H ++ N AG + + YIS +
Sbjct: 122 YHFDAIGHQEAFWLMVDLANKDTKISQRDIKDIHNLVLMS-NRANAGVYRKIPVYISGS- 179
Query: 144 SDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGN 203
N T+ P+ L+++ + Y+ N + I F DF IHPF DGN
Sbjct: 180 KHNVTQ-------PYLIESKLEQLIDWYH----NSNEHIIKKIAKFHLDFEAIHPFIDGN 228
Query: 204 GRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDAL 243
GR RL+ L L +NGFY ++ K N++LYY A
Sbjct: 229 GRTGRLIINLELMKNGFY-----PIDIKFT-NRNLYYQAF 262
>gi|89902795|ref|YP_525266.1| filamentation induced by cAMP protein Fic [Rhodoferax ferrireducens
T118]
gi|89347532|gb|ABD71735.1| filamentation induced by cAMP protein Fic [Rhodoferax ferrireducens
DSM 15236]
Length = 360
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/203 (28%), Positives = 90/203 (44%), Gaps = 17/203 (8%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPK---NRDEQEIAGYRDVLNIIHES 102
L+ +Q + S+ IE IVTT +L K+ P+ + +E+ YR L + E
Sbjct: 47 LINTLALQEAKDSSEIENIVTTH---DELFKDDVLPEAFASPAAKEVLRYRQALRVGFEL 103
Query: 103 FDAIPL-SQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLA-PFET 160
L S N+I+Q+ L NN AG + A + + ++TP P E
Sbjct: 104 VRTSGLLSCNHIIQIQGEL--ERNN--AG----FRKLPGTALKNGGGQTIYTPPQDPVEI 155
Query: 161 SEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
E + + E + + +PLI + + H F IHPF DGNGR R++ L L + G
Sbjct: 156 IELMRGL-ERFMNDADLFDADPLIKMALIHHQFESIHPFYDGNGRTGRIVNVLYLVKEGL 214
Query: 221 YVGKYISLEAKIAKNKDLYYDAL 243
+ L I ++K YY L
Sbjct: 215 LDIPVLYLSQHIVRHKADYYRLL 237
>gi|123444285|ref|YP_001008253.1| conserved ypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122091246|emb|CAL14129.1| conserved ypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 369
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 10/198 (5%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ + I + S+ IE IVTT+ ++ Q E + ++ + YR L ++
Sbjct: 55 LINLIPILEAKDSSEIENIVTTTDKLFQYSSEDSNADPMTKEALR-YRTALYEGYQELKD 113
Query: 106 IPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALD 165
PL N L K+ + N+ M I+ + +A + E ++TP P ++
Sbjct: 114 RPLCVNTAL---KVCNTIKNSKM--EIRKIPG--TALKNQATGETIYTP--PVGERNIIE 164
Query: 166 KICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKY 225
+ + + +++PL+ + + + F IHPF+DGNGR R++ L L
Sbjct: 165 LLSDWEKFIHQEDDLDPLVKLAIIHYQFEAIHPFSDGNGRTGRVINLLFLIDKNLITLPI 224
Query: 226 ISLEAKIAKNKDLYYDAL 243
+ L I KNK+ YY L
Sbjct: 225 LYLSRYIIKNKNSYYSLL 242
>gi|153891801|ref|ZP_02012782.1| filamentation induced by cAMP protein Fic [Opitutaceae bacterium
TAV2]
gi|151582129|gb|EDN45701.1| filamentation induced by cAMP protein Fic [Opitutaceae bacterium
TAV2]
Length = 388
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 70/268 (26%), Positives = 115/268 (42%), Gaps = 33/268 (12%)
Query: 14 WDSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQ 73
WD+ L+ GK E + P L + ++ S+ IEG +T I +
Sbjct: 36 WDAALQNLLQNAALALGKLESLTQFLPNPHLFLYSYVRKEAL-LSSQIEGTQSTFDDIIK 94
Query: 74 LVKEKTTPKNRDEQ-EIAGYRDVL-NIIHESFDAIPLSQNYILQLHKILYS----HMNNP 127
E ++ D+ E++ Y + + + + PLS + ++H +L S H P
Sbjct: 95 FEAEGSSGVQSDDVIEVSCYVAAMEHGLRRLAEGFPLSLRLLREIHGVLLSKGRGHQKQP 154
Query: 128 MAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIP 187
G ++ QN+I + N + P + E+L + E++ + EP + P
Sbjct: 155 --GEFRTSQNWIGGSRPGNAA---YVPPPVEQMMESLGTL-EKF------LHDEP-VPTP 201
Query: 188 VFIH------DFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYD 241
V + F IHPF DGNGR+ RLL TLLL + L + +N+D YY
Sbjct: 202 VLVKAALAHVQFETIHPFLDGNGRVGRLLITLLLCHEKILSQPLLYLSLHLKQNRDEYYR 261
Query: 242 ALGRAQIGWHEGE-EDVVPFIKYLLGTV 268
L R + +GE ED ++ + LG V
Sbjct: 262 LLQRVRT---DGEWED---WLAFFLGGV 283
>gi|114564993|ref|YP_752507.1| filamentation induced by cAMP protein Fic [Shewanella frigidimarina
NCIMB 400]
gi|114336286|gb|ABI73668.1| filamentation induced by cAMP protein Fic [Shewanella frigidimarina
NCIMB 400]
Length = 368
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/220 (22%), Positives = 94/220 (42%), Gaps = 15/220 (6%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAI-----PLSQNY 112
S+AIEG + ++ + K + D L I + DA+ PL
Sbjct: 57 SSAIEGETLNALSVRSSLANKLGVSEENPYPTTAQTDGLADI--TLDALQNWQQPLRLTR 114
Query: 113 ILQLHKILYSH----MNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKIC 168
IL H +L+ N + G+++ + + + I F ++L +
Sbjct: 115 ILDWHALLFPSNQAVFNPVIGGKLRGDEPMQVVSGRLDKPTIHFEAPPRDTLDQSLTEFI 174
Query: 169 EEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISL 228
E +N+ +++PL+ + F+ +HP +DGNGR++RLLT L L + + ++
Sbjct: 175 EWFNQSRKQADLDPLVRAAITHLWFVTLHPLDDGNGRITRLLTDLALAQAEHRSIHFYAM 234
Query: 229 EAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
I + + YY L Q +G D+ P++ + L T+
Sbjct: 235 SVSILERRKAYYAILESTQ----QGSLDITPWLLWFLDTL 270
>gi|111024218|ref|YP_707190.1| hypothetical protein RHA1_ro07268 [Rhodococcus sp. RHA1]
gi|110823748|gb|ABG99032.1| conserved hypothetical protein [Rhodococcus sp. RHA1]
Length = 399
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 59/230 (25%), Positives = 98/230 (42%), Gaps = 16/230 (6%)
Query: 29 AGKQEMYLKQRPEELEKL-VEIAKIQSTEASNAIEGIVTTSTRIKQL--------VKEKT 79
+G+ + ++ EL + VE+ I + AS + +S+ I+ L + E
Sbjct: 56 SGELQSLTEEAATELTRFDVEVGHITAPFASILLRTESASSSEIENLSSGARQIALAELG 115
Query: 80 TPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYI 139
+R+ + I G ++ E D+I ILQ+H+ L + + +AGR + Q +I
Sbjct: 116 EHASRNARLIVGNVRAMHAALELSDSI--DAEAILQMHRALLENGDPNIAGRWRQQQVWI 173
Query: 140 SAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPF 199
HT F P E +D + NRV +V + I + F IHPF
Sbjct: 174 GGGSLGPHTA-QFVPPHHDRVPELIDDLIVFANRV----DVPVIAQIAIAHAQFETIHPF 228
Query: 200 NDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIG 249
DGNGR+ R L +L + + A + + Y+DALG + G
Sbjct: 229 PDGNGRVGRALIQAMLRGGQLTRSVPVPVSAGLLHDTAEYFDALGEYRSG 278
>gi|145300534|ref|YP_001143375.1| hypothetical protein ASA_3666 [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853306|gb|ABO91627.1| conserved hypothetical protein [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 389
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 61/224 (27%), Positives = 103/224 (45%), Gaps = 28/224 (12%)
Query: 87 QEIAGYRDVLNIIHESFD-AIPLSQNYILQLHKILYSHMN-----NPMAGRIKSVQNYIS 140
+EI+ + I E + +P +++ I +LH + S + P + R + V+ S
Sbjct: 91 REISNIEHAMAYIDEVVEPGMPFTEHLIRELHTLAVSSLEREGDRTPGSYRQEGVRIAQS 150
Query: 141 AAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFN 200
H ++ P S+ ++ I NR + + L+ + + H F IHPF
Sbjct: 151 THLPPEHIQV------PGYMSDLVNFI----NR--ADSQKYDLMKVALAHHRFGWIHPFT 198
Query: 201 DGNGRMSRLLTTLLLYRNGFYV---GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDV 257
+GNGR RLLT LL + GF V G+ ++ A +++ YY L A G EG E
Sbjct: 199 NGNGRTVRLLTYALLIKYGFNVKDGGRVLNPTAVFCNDRNRYYRMLSAADEGTAEGRET- 257
Query: 258 VPFIKYLLGTVLAAYR--DFADRFALVE--IKLPALETVRRAAL 297
+ Y+L +LA + D R+A ++ + LPAL ++ L
Sbjct: 258 --WCIYVLDGILAELKKVDQLTRYAYLQEHVLLPALAYSKKRGL 299
>gi|15603635|ref|NP_246709.1| hypothetical protein PM1770 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12722188|gb|AAK03854.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 382
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 76/310 (24%), Positives = 135/310 (43%), Gaps = 36/310 (11%)
Query: 45 KLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFD 104
+L I + + S IEG TT + + T + +EI + + I E
Sbjct: 47 QLKSIFHMLESLGSARIEGNHTTLADYVESHLDSQTTSSEQLEEIRNIENAMRFIDEHLK 106
Query: 105 -AIPLSQNYILQLHKILYSHM---NNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFET 160
P+S+ +I +LH + + + + G+ ++ Q I+ + S E +F P E
Sbjct: 107 VGEPISELFIKELHALTVTGLAKEGDKTPGQYRTHQVAIAQS-SHLPPESIFVPAYMGEL 165
Query: 161 SEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
E ++ + L+ I + H F IHPF +GNGR RLLT LL + GF
Sbjct: 166 VEFINN---------NDKPKYDLMKIALAHHRFGWIHPFGNGNGRTVRLLTYALLVKYGF 216
Query: 221 YV---GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDF-- 275
V G+ ++ A +++ YY+ L +A G EED+ + Y+L + +
Sbjct: 217 NVQAGGRVLNPTAVFCSDRNRYYEMLSQADKG---TEEDLEAWCTYVLSGISRELQKVDK 273
Query: 276 --ADRFALVEIKLPALE-TVRRAALN----KIGRFTKQ-------DIRELCPSLSISSIE 321
+ +F I PA++ + +R +N KI RF + D+ +L ++ +
Sbjct: 274 LTSQQFLNENILFPAIQYSQKRQFINEDEAKILRFAVEQREFKAGDLAKLFSKMNANQRT 333
Query: 322 GGLRKLVSAG 331
++KLV +G
Sbjct: 334 YQIKKLVESG 343
>gi|75676295|ref|YP_318716.1| filamentation induced by cAMP protein Fic [Nitrobacter winogradskyi
Nb-255]
gi|74421165|gb|ABA05364.1| filamentation induced by cAMP protein Fic [Nitrobacter winogradskyi
Nb-255]
Length = 391
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 24/278 (8%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA---IPLSQNYIL 114
++ IEG + + E+ N D +E+ Y D L + +P+S +
Sbjct: 79 TSQIEGTQASLVDLLAFEAEEQPSPNADVEEVTNYLDALTYARTQLGSKRGLPISLRLLN 138
Query: 115 QLHKILY--SHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYN 172
+ HK L + G I+ QN+I + N ++ P S+ L K+ +
Sbjct: 139 EAHKRLMRGGRGASKQPGEIRRSQNWIGGSRPGN---AVYVP----PPSDKLPKLLGAFE 191
Query: 173 RVIGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAK 231
+ I + P + +H F IHP+ DGNGR+ RL+ LLL G + L
Sbjct: 192 KYIHAEDRLPKLVRTALLHAQFESIHPYLDGNGRIGRLMIALLLEHWGLLKQPLLYLSLF 251
Query: 232 IAKNKDLYYDALG--RAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPAL 289
++++ YY L R + W + + + + +A+ R+ F LV L
Sbjct: 252 FKRHREEYYRRLNLVRLEGDWEGWTDFFLDGVATIADEAVASAREL---FNLVSTDRTRL 308
Query: 290 ETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKL 327
V A+++ F EL P I S+ +R L
Sbjct: 309 LGVESASVSAFRLF------ELLPRHPIVSVASAMRLL 340
>gi|106894246|ref|ZP_01361367.1| Filamentation induced by cAMP protein Fic [Clostridium sp. OhILAs]
gi|106774467|gb|EAT31030.1| Filamentation induced by cAMP protein Fic [Clostridium sp. OhILAs]
Length = 255
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/201 (27%), Positives = 87/201 (43%), Gaps = 17/201 (8%)
Query: 25 IYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNR 84
I K K Y +E+ +L E I T SNAIEG T ++KE T +
Sbjct: 5 IEKLKSKLNEYRPLTSDEVRRLREEFLINFTYNSNAIEGNTLTLQETALILKEGITIDEK 64
Query: 85 ---DEQEIAGYRDVLNIIHESF-DAIPLSQNYILQLHKILYSHMNNPMA-GRIKSVQNYI 139
D E G++D I E D + LS+N I +H ++ M+ P G + + I
Sbjct: 65 PLKDHLEAVGHKDAFYYIEELVKDKVDLSENAIKDIHTLVL--MDKPQQRGMYRRIPVTI 122
Query: 140 SAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPF 199
A + P P+ ++++ EY + + + +A+ F F +HPF
Sbjct: 123 LGAVHE--------PPQPYLVPVLMEQLLREYKEEMKDKHIIEKVAL--FHLKFEGVHPF 172
Query: 200 NDGNGRMSRLLTTLLLYRNGF 220
DGNGR RL+ L L + G+
Sbjct: 173 IDGNGRTGRLILNLELMKEGY 193
>gi|149195754|ref|ZP_01872811.1| Cell filamentation protein Fic [Lentisphaera araneosa HTCC2155]
gi|149141216|gb|EDM29612.1| Cell filamentation protein Fic [Lentisphaera araneosa HTCC2155]
Length = 326
Score = 57.4 bits (137), Expect = 1e-06, Method: Composition-based stats.
Identities = 81/328 (24%), Positives = 152/328 (46%), Gaps = 24/328 (7%)
Query: 19 LGLIAAIYKEAGKQE-MYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKE 77
L L+A + G+ E M L + +L +I++ ++ AIEG + ++ + +
Sbjct: 18 LSLLAEVMHHLGRLEGMALSAKTSP--QLRRQNRIKTIYSTLAIEGNTLSLDQVTAFIDD 75
Query: 78 KTT-PKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQ 136
KT +D E++ + +H +FD + L+ H+IL + + AG+ +
Sbjct: 76 KTVLGPQKDILEVSNAVKLYEQVH-NFDCAQVKD--FLEAHQILMTSLIAD-AGKFRRGG 131
Query: 137 NYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCI 196
I H +AP +E + + + + + E LI V ++ I
Sbjct: 132 VGIQKGNDIVH-------IAP--PAENVPGLLNDLFSYVRSHEDHALIQSCVLHYELEFI 182
Query: 197 HPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEED 256
HPF+DGNGRM RL TL L + +Y+ +E+ I +++ YY L +I GE
Sbjct: 183 HPFSDGNGRMGRLWQTLKLMELS-PLFEYLPVESLIKSHQEQYYRVL---KICDQAGEST 238
Query: 257 VVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNKIGRFTKQDIRELCPSLS 316
V FI+++L +LA+ +++ + + + + + + ++ F + D +L PSLS
Sbjct: 239 V--FIEFMLKQILASLKEYEAKADMKAHDFDSRINLAKESFHQ-REFVRADYLKLFPSLS 295
Query: 317 ISSIEGGLRKLVSAGELKREGSGKNICY 344
+S L+K + A L++ GSG+ Y
Sbjct: 296 TASASRDLKKALLAELLEKRGSGRMSSY 323
>gi|114570865|ref|YP_757545.1| filamentation induced by cAMP protein Fic [Maricaulis maris MCS10]
gi|114341327|gb|ABI66607.1| filamentation induced by cAMP protein Fic [Maricaulis maris MCS10]
Length = 376
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 65/272 (23%), Positives = 122/272 (44%), Gaps = 24/272 (8%)
Query: 20 GLIAAIYKEAGKQEMYLKQRPEEL--EKLVEIAKIQSTEASNAIEGIVTTSTRIKQ-LVK 76
GL+ ++AG+ L P+ + E ++E+ ++ + S IEG + ++ L+K
Sbjct: 22 GLLYEFAEKAGRVSGALSGLPDSMQTETIIELMVAEAVKTSE-IEGEFISREDVRSSLMK 80
Query: 77 E---KTTPKNRDEQEIAGYRDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNP---MAG 130
P+ ++ G ++ + + + A PL+ + H++L + +P G
Sbjct: 81 HLGVGPEPEEVSDERAKGVAQLMLRVRDEY-AAPLTDQMLFDWHQLLLGGVADPEKLSVG 139
Query: 131 RIKSVQ---NYISAAYSD--NHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIA 185
+ +S +S AY H E + P E + + + M+ P+ +
Sbjct: 140 QWRSSDEPMQVVSGAYGKWKVHYEAPPSDRVPDEMARYISWFNDSAPDGPAAMQPAPVRS 199
Query: 186 IPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGR 245
++ F +HPF DGNGR+ R L+ +L + G +SL I + ++ YYDAL R
Sbjct: 200 AIAHVY-FESVHPFEDGNGRVGRALSEKVLSQ-GLGRPVVLSLSEAIERKRNDYYDALKR 257
Query: 246 AQIGWHEGEEDVVPFIKYLLGTVLAAYRDFAD 277
AQ DV ++ Y + T++ A +D AD
Sbjct: 258 AQ-----RSNDVTEWVHYFVSTIVEA-QDRAD 283
>gi|148254735|ref|YP_001239320.1| hypothetical protein BBta_3312 [Bradyrhizobium sp. BTAi1]
gi|146406908|gb|ABQ35414.1| hypothetical protein BBta_3312 [Bradyrhizobium sp. BTAi1]
Length = 376
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 20/169 (11%)
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F+ IHPF DGN R++R + L L R+ ++ S+ A+I K + YYD L R Q
Sbjct: 202 FVTIHPFEDGNRRIARAIADLALARSEESTQRFYSMSAQIRKERKAYYDILERTQ----R 257
Query: 253 GEEDVVPFIKYLLGTVLAAYRDFAD--------RFALVEIK-LPALETVRRAALNKI--- 300
G D+ ++ + LG + A+ D AD + AL E AL +R LN++
Sbjct: 258 GTLDITNWLDWFLGCLERAF-DGADTILGSVLQKAALWEKHGASALNDRQRLLLNRVLDG 316
Query: 301 --GRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRL 347
G+ T ++ +S + + L+ G LK++ +G Y L
Sbjct: 317 FEGKLTSSKWAKIA-KVSQPTATRDIDDLIKRGILKKDAAGGRSTSYSL 364
>gi|148265105|ref|YP_001231811.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
gi|146398605|gb|ABQ27238.1| filamentation induced by cAMP protein Fic [Geobacter
uraniumreducens Rf4]
Length = 374
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 50/183 (27%)
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F+ IHPF+DGNGR++R+LT + L ++ +Y SL +I ++ YY L Q +
Sbjct: 202 FVTIHPFDDGNGRIARVLTDMALAQDDKQHNRYYSLSTQIMAERETYYTILENTQ----K 257
Query: 253 GEEDVVPFIKYLLG----------TVLA------------AYRDFADRFALVEIKL---- 286
G D+ ++ + LG T+LA A +DR V ++
Sbjct: 258 GNGDITDWLVWFLGCFARAIERSETILAGVFMRAEFWRKHAEVTLSDRQKKVINRVLEEG 317
Query: 287 PA-----LETVRRAALNKIGRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKN 341
P+ L T + A++ K+ R T RE L +LV G LKR G G++
Sbjct: 318 PSGFEGGLTTRKYASIGKVSRATA--FRE-------------LDQLVELGILKRSGKGRS 362
Query: 342 ICY 344
+ Y
Sbjct: 363 VSY 365
>gi|86139896|ref|ZP_01058462.1| hypothetical protein MED193_12723 [Roseobacter sp. MED193]
gi|85823525|gb|EAQ43734.1| hypothetical protein MED193_12723 [Roseobacter sp. MED193]
Length = 329
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F+ IHPF DGNGR++R + L L R+ ++ S+ A+I + YYD L + Q +
Sbjct: 165 FVTIHPFEDGNGRIARAIADLALARSEGSSQRFYSMSAQIRTERSAYYDQLEQTQ----K 220
Query: 253 GEEDVVPFIKYLLGTVLAAYRDFADRFALVEIKLPALETVRRAALNK 299
GE DV ++ + L + A R A V K E LN+
Sbjct: 221 GETDVTEWVLWFLACLDRAIRGADSVLAAVVAKAQFWERAAPMPLNE 267
>gi|16119266|ref|NP_395972.1| hypothetical protein AGR_pAT_51 [Agrobacterium tumefaciens str.
C58]
gi|17938627|ref|NP_535415.1| hypothetical protein Atu5039 [Agrobacterium tumefaciens str. C58]
gi|15161770|gb|AAK90413.1| AGR_pAT_51p [Agrobacterium tumefaciens str. C58]
gi|17743462|gb|AAL45731.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 393
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDE-QEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
S+ IEG +T + + + E + D+ +E++ Y D + E + +P+S I ++
Sbjct: 81 SSQIEGTQSTLSDLLRFETEAQAGQPVDDIREVSNYVDAMMYGLERLETLPMSLRLIREM 140
Query: 117 H-KILYSHMNNPM-AGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
H ++L+S G + QN+I N LF P E + LD + R
Sbjct: 141 HARLLHSGRGGTKDPGEFRRSQNWIGGTRPGN---ALFVPPPVTEMAGCLDA----FERF 193
Query: 175 IGNME--VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNG 219
+ + + + LI + F IHPF DGNGR+ RLL TL L NG
Sbjct: 194 MHDDQSRLPALIKAGLLHVQFETIHPFLDGNGRIGRLLVTLYLCMNG 240
>gi|37528115|ref|NP_931460.1| hypothetical protein plu4284 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787552|emb|CAE16656.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 365
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/178 (25%), Positives = 87/178 (48%), Gaps = 7/178 (3%)
Query: 96 LNIIHESFDAIPLSQNYILQLHKILYSH---MNNPM-AGRIKSVQNYISAAYSDNHTEIL 151
L++I S + L + IL+ H++++ M NP+ G+++ + + D T L
Sbjct: 100 LDVIENSHSDLTLER--ILRWHQLIFPEGYTMFNPIQGGKLRKGMIEVISGRLDKPTVHL 157
Query: 152 FTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLT 211
P P + + + E +N+ + ++P+I + F+ IHP DGNGR++R LT
Sbjct: 158 EAP-PPERMVDEMPQFIEWFNQSRTDASLDPIIRAAIVHLWFVTIHPLEDGNGRITRFLT 216
Query: 212 TLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVL 269
L L + ++ ++ I ++ YY+ L Q G + + +V F+K L T++
Sbjct: 217 DLALAQAENRSIRFYAMSVSICHHRKAYYELLENTQRGGLDITDWLVWFLKILNETLI 274
>gi|17938969|ref|NP_535757.1| hypothetical protein Atu5385 [Agrobacterium tumefaciens str. C58]
gi|17743835|gb|AAL46073.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 322
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDE-QEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
S+ IEG +T + + + E + D+ +E++ Y D + + + +P+S I ++
Sbjct: 10 SSQIEGTQSTLSDLLRFETEAQAGQPVDDIREVSNYVDAMMYGLQRLETLPMSLRLIREM 69
Query: 117 H-KILYSHMNNPM-AGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
H K+L+S G + QN+I N LF P E + LD + R
Sbjct: 70 HAKLLHSGRGGTKDPGEFRRSQNWIGGTRPGN---ALFVPPPVTEMAGCLDA----FERF 122
Query: 175 IGNME--VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNG 219
+ + + + LI + F IHPF DGNGR+ RLL TL L NG
Sbjct: 123 MHDDQSRLPALIKAGLLHVQFETIHPFLDGNGRIGRLLVTLYLCMNG 169
>gi|149195793|ref|ZP_01872850.1| Fic [Lentisphaera araneosa HTCC2155]
gi|149141255|gb|EDM29651.1| Fic [Lentisphaera araneosa HTCC2155]
Length = 348
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 15/174 (8%)
Query: 55 TEASNAIEGIVTTSTRIKQLVKEKTTPKN---RDEQEIAGYRDVLNIIHESFDAIPLSQN 111
T S +IEG + ++ E T R+ EIAG+ + I++ +D L ++
Sbjct: 118 THDSTSIEGNTLSLGETSFILNEGLTISGKSLREHDEIAGHARAIEAIYQIYDREQLDED 177
Query: 112 YILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHT----EILFTPLAPFETSEALDKI 167
+ +H+ + M NP K V + DN E + P +P +T ++
Sbjct: 178 DLFLVHRAM---MINPAFDIYKPVGAW---KKEDNGAYWGREYILYP-SPQKTPHLMNLW 230
Query: 168 CEEYNRVIGNMEVEPLIAIPVFIHD-FLCIHPFNDGNGRMSRLLTTLLLYRNGF 220
E+N++ ++ + ++ +H F CIHPF DGNGRM+RLL + + R G+
Sbjct: 231 LHEFNQIPRDLNLPEMLKAYSRLHILFTCIHPFFDGNGRMARLLANIPIIRAGY 284
>gi|120603652|ref|YP_968052.1| filamentation induced by cAMP protein Fic [Desulfovibrio vulgaris
subsp. vulgaris DP4]
gi|120563881|gb|ABM29625.1| filamentation induced by cAMP protein Fic [Desulfovibrio vulgaris
subsp. vulgaris DP4]
Length = 248
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 100/221 (45%), Gaps = 26/221 (11%)
Query: 52 IQSTEASNAIEGIVTTSTRIKQLVKEKTT---PKNRDEQEIAGYRDVLNIIHESFDA-IP 107
++ T SNAIEG + K ++++ T R+ E + + ++ + DA P
Sbjct: 36 LRYTFHSNAIEGNTLSLMETKVVLEDGMTIGGKSVREHLEAINHAEAISFLETLVDAGAP 95
Query: 108 LSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKI 167
L + + +LH+++ +++ AGR ++ IS A HT P +D
Sbjct: 96 LDERSLKELHQLVLRGISDS-AGRYRTGNVIISGA---GHT----LP-DHLHVQHRMDAF 146
Query: 168 CEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYIS 227
+ Y + M++ P+ D + IHPF DGNGR SRL L L R GF I
Sbjct: 147 FDWYGQ--EEMQLHPVERAARMHADLVVIHPFTDGNGRTSRLAMNLELMRAGFPT-VVIP 203
Query: 228 LEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
+E + A ++L DA+G Q D PFI+ ++ V
Sbjct: 204 VEQRAAYYENL--DAVGTRQ--------DYEPFIRQVVALV 234
>gi|16119611|ref|NP_396317.1| hypothetical protein AGR_pAT_556 [Agrobacterium tumefaciens str.
C58]
gi|15162177|gb|AAK90758.1| AGR_pAT_556p [Agrobacterium tumefaciens str. C58]
Length = 393
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 12/167 (7%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDE-QEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
S+ IEG +T + + + E + D+ +E++ Y D + + + +P+S I ++
Sbjct: 81 SSQIEGTQSTLSDLLRFETEAQAGQPVDDIREVSNYVDAMMYGLQRLETLPMSLRLIREM 140
Query: 117 H-KILYSHMNNPM-AGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
H K+L+S G + QN+I N LF P E + LD + R
Sbjct: 141 HAKLLHSGRGGTKDPGEFRRSQNWIGGTRPGN---ALFVPPPVTEMAGCLDA----FERF 193
Query: 175 IGNME--VEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNG 219
+ + + + LI + F IHPF DGNGR+ RLL TL L NG
Sbjct: 194 MHDDQSRLPALIKAGLLHVQFETIHPFLDGNGRIGRLLVTLYLCMNG 240
>gi|78189403|ref|YP_379741.1| hypothetical protein Cag_1441 [Chlorobium chlorochromatii CaD3]
gi|78171602|gb|ABB28698.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 367
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 177 NMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNK 236
N++++ +I + F+ IHPF DGNGR++R LT +LL ++ ++ S+ A+I +
Sbjct: 187 NVKIDLVIKAAIAHLWFVTIHPFEDGNGRITRALTDMLLAQSDNSNQRFYSMSAQIRIER 246
Query: 237 DLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYR 273
YYD L + Q +G D+ +I++ L ++ A +
Sbjct: 247 KQYYDILEKTQ----KGNLDITEWIQWFLNCLINALK 279
>gi|146279797|ref|YP_001169955.1| hypothetical protein Rsph17025_3792 [Rhodobacter sphaeroides ATCC
17025]
gi|145558038|gb|ABP72650.1| hypothetical protein Rsph17025_3792 [Rhodobacter sphaeroides ATCC
17025]
Length = 365
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 178 MEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKD 237
+ ++P+I + F+ IHPF DGNGR++R + L L R+ ++ S+ A+I +
Sbjct: 186 LAIDPVIKAALAHLWFVTIHPFEDGNGRIARAIADLALARSEGSSQRFYSMSAQIRTERS 245
Query: 238 LYYDALGRAQIGWHEGEEDVVPFIKYLL 265
YYD L R Q +G D+ +I + L
Sbjct: 246 AYYDQLERTQ----KGSTDITAWILWFL 269
>gi|67938587|ref|ZP_00531110.1| Filamentation induced by cAMP protein Fic [Chlorobium
phaeobacteroides BS1]
gi|67915175|gb|EAM64500.1| Filamentation induced by cAMP protein Fic [Chlorobium
phaeobacteroides BS1]
Length = 389
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 13/192 (6%)
Query: 58 SNAIEGIVTTSTRIK--QLVKEKTTPKNRDEQEIAGYRDVLNIIHESF-DAIPLSQNYIL 114
S+ IEG ++ + + +L +E P + D QE++ Y LN E + PLS +
Sbjct: 78 SSMIEGTQSSLSDLLMFELDQEPGVPLD-DVQEVSNYISALNHGLERLANGFPLSLRLLK 136
Query: 115 QLHKILYS--HMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYN 172
++HKIL + + G + QN+I N + F P P E + K+ E +
Sbjct: 137 EVHKILLAKGRGSEKTPGEFRRSQNWIGGTRPGNAS---FVPPPPEMVMECMGKL-ELF- 191
Query: 173 RVIGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAK 231
+ E P++ H F IHPF DGNGR+ RLL T+LL + L
Sbjct: 192 -LHDQPEPTPVLIKAALAHVQFETIHPFLDGNGRLGRLLITMLLCERKVLHEPLLYLSLY 250
Query: 232 IAKNKDLYYDAL 243
+ ++ YY+ L
Sbjct: 251 LKTHRKTYYELL 262
>gi|109728744|ref|ZP_01380155.1| hypothetical protein RbelO_01000949 [Rickettsia bellii OSU 85-389]
Length = 388
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 10/167 (5%)
Query: 85 DEQEIAGY-RDVLNIIHESFDAIPLSQNYILQLHKILYS--HMNNPMAGRIKSVQNYISA 141
D +E++ Y + ++ + D P S + ++H IL S + + G + QN+I
Sbjct: 104 DVEEVSNYVKAIMYGLERLKDGFPFSLRLLREIHNILLSGGRGSKKLPGEFRRSQNWIGG 163
Query: 142 AYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFND 201
N LF P + L+ + + + + LI + F IHPF D
Sbjct: 164 TRPGN---ALFVP----PPVDYLNDCLSHFENFLHDNSLPVLIKAGIAHVQFETIHPFLD 216
Query: 202 GNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQI 248
GNGR+ RLL TLL N + L + +N+ +YY+ L ++
Sbjct: 217 GNGRLGRLLITLLFCHNEILNAPILYLSLYLKQNRHIYYELLQEVRM 263
>gi|146343190|ref|YP_001208238.1| hypothetical protein BRADO6394 [Bradyrhizobium sp. ORS278]
gi|146195996|emb|CAL80023.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
Length = 376
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 193 FLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRAQIGWHE 252
F+ IHPF DGNGR+ R + L L R+ ++ S+ A+I K + YYD L R Q
Sbjct: 202 FVTIHPFEDGNGRIGRAIADLALARSEESTQRFYSMSAQIRKERKAYYDILERTQ----R 257
Query: 253 GEEDVVPFIKYLLGTVLAAYRDFAD---RFALVEIKL------PALETVRRAALNKI--- 300
G D+ ++ + L + A+ D AD R L + AL +R LN++
Sbjct: 258 GSLDITSWLDWFLSCLGRAF-DGADTILRNVLQKASFWEKHGATALNDRQRLLLNRVLDG 316
Query: 301 --GRFTKQDIRELCPSLSISSIEGGLRKLVSAGELKREGSGKNICYYRL 347
G+ T ++ +S + + L+ G L+++ +G Y L
Sbjct: 317 FEGKLTSSKWAKIA-KVSQPTATRDIDDLIKRGILQKDAAGGRSTSYSL 364
>gi|16263601|ref|NP_436394.1| hypothetical protein SMa2105 [Sinorhizobium meliloti 1021]
gi|14524308|gb|AAK65806.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 406
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 79/191 (41%), Gaps = 12/191 (6%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDE-QEIAGYRDVLNIIHESFDAIPLSQNYILQL 116
S+ IEG +T + + + E + + D+ +E++ Y D + E +PLS I ++
Sbjct: 94 SSQIEGTQSTLSDLLRFETEAISGEPVDDIREVSNYVDAMMFGLERMRQLPLSLRLIREM 153
Query: 117 HKILYS--HMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRV 174
H+ L G ++ QN+I N +F P E L ++ R
Sbjct: 154 HQRLLDSGRGGRRSPGEFRTSQNWIGGTRPGN---AMFVPPPANEVMTCLG----DWERF 206
Query: 175 IGNM--EVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKI 232
I + PLI + F IHPF DGNGR+ RLL TL L G + L
Sbjct: 207 IHEETPSIPPLIKAGLIHVQFETIHPFLDGNGRLGRLLITLFLCATGVLQQPLLYLSLYF 266
Query: 233 AKNKDLYYDAL 243
+ YY L
Sbjct: 267 KSRRPDYYRLL 277
>gi|88795427|ref|ZP_01111124.1| hypothetical protein MADE_10142 [Alteromonas macleodii 'Deep
ecotype']
gi|88773280|gb|EAR04548.1| hypothetical protein MADE_10142 [Alteromonas macleodii 'Deep
ecotype']
Length = 363
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 20/220 (9%)
Query: 46 LVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDA 105
L+ + + + S+ IE IVTT+ ++ Q E + +E YR L + +
Sbjct: 54 LINLLPLLEAKDSSEIENIVTTTDKLFQYALEDKG-ADHATKEALRYRTALYQGYIQLER 112
Query: 106 IPLSQNYILQLHKIL-YSHMNNPMAGRIKSVQNYISAAYSDNHT--EILFTPLAPFETSE 162
PL +++ L +S M+ I+ V + N T EI++TP A
Sbjct: 113 KPLCTATAIEVCSTLKHSEMD------IRKV----PGTFIGNQTTGEIIYTPPA---GEN 159
Query: 163 ALDKICEEYNRVI-GNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFY 221
+ + + R + + +++PLI + V + F IHPF DGNGR R+L L L G
Sbjct: 160 VIRDLLTNWERFLHDDDDIDPLIKMAVSHYQFEAIHPFYDGNGRTGRILNVLYLIECGLL 219
Query: 222 VGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFI 261
+ L I NK YY L Q+ + ED + FI
Sbjct: 220 TLPILYLSRFIVHNKQDYYRLLN--QVTKDQNWEDWLLFI 257
>gi|24461719|gb|AAN62288.1|AF440524_75 conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 501
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 93 RDVLNIIHESFDAIPLSQNYILQLHKILYSHMNNP--MAGRIKSVQNYISAAYSDNHTEI 150
R + ++ ++ + PL+++Y++ L + ++NP MA + QN++S + +
Sbjct: 216 RRFIQLLRQAHERQPLTEDYLVSLQN---ATVSNPLDMAAAFRHEQNHLSDG-TQGAVGV 271
Query: 151 LFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLL 210
+ P P E ++ + N +++PL+A + F+ IHPF DGNGR+SR L
Sbjct: 272 TYLPPPPELCRELMESLMGFANE--APTQIDPLVAAGIISFGFVLIHPFMDGNGRLSRFL 329
Query: 211 TTLLLYRNG 219
L R G
Sbjct: 330 IHQALCRAG 338
>gi|145226099|ref|YP_001136753.1| filamentation induced by cAMP protein Fic [Mycobacterium gilvum
PYR-GCK]
gi|145218562|gb|ABP47965.1| filamentation induced by cAMP protein Fic [Mycobacterium gilvum
PYR-GCK]
Length = 394
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 62/246 (25%), Positives = 104/246 (42%), Gaps = 24/246 (9%)
Query: 107 PLSQNYILQLHKILYSHMNNPMA---GRIKSVQNYISAA-YSDNHTEILFTPLAPFETSE 162
P+ IL+ H++L + +P A G +SVQN++ + YS LF P P E
Sbjct: 133 PIEAAAILEAHRLLMA--PDPYADRPGSYRSVQNWVGGSDYSP--VGALFVPPPP----E 184
Query: 163 ALDKICEEYNRVIGNMEVEPLIAIPVFIH-DFLCIHPFNDGNGRMSRLLTTLLLYRNGFY 221
+ + + G ++ P++A H F IHPF DGNGR+ R L + +L R G
Sbjct: 185 MVSGLMADLMAFAGRTDI-PILAQAAIAHAQFESIHPFFDGNGRVGRALISAILRRRGLT 243
Query: 222 VGKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLAAYRDFADRFAL 281
+ + + + + D Y+ L + G G E V ++ A + A R A+
Sbjct: 244 ARVTVPMASAMLADTDRYFRCLTEYRRG---GAEQFVGYVADAAVHASEAAAESAARLAV 300
Query: 282 V-----EIKLPALETVRRAALNKIGRFT--KQDIRELCPSLSISSIEGGLRKLVSAGELK 334
+ EI P + A + ++ D + + +S L +L AG L+
Sbjct: 301 LPERWREIARPRANSADEALIERLLDVPIFNADTAQAMTGTTEASTYKALSRLTDAGVLE 360
Query: 335 REGSGK 340
+GK
Sbjct: 361 LLSTGK 366
>gi|50119466|ref|YP_048633.1| hypothetical protein ECA0515 [Erwinia carotovora subsp. atroseptica
SCRI1043]
gi|49609992|emb|CAG73430.1| conserved hypothetical protein [Erwinia carotovora subsp.
atroseptica SCRI1043]
Length = 380
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 75/317 (23%), Positives = 126/317 (39%), Gaps = 34/317 (10%)
Query: 40 PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNII 99
P +L I + + S IEG TT + E T +EI + I
Sbjct: 41 PILFAQLKAIFHMLESLGSARIEGNHTTLADYVESKVEGTQSSTDQLKEINNIEAAMEFI 100
Query: 100 HESFD-AIPLSQNYILQLHKILYSHMNN-----PMAGRIKSVQNYISAAYSDNHTEILFT 153
E + +++ +I +LH + + P A R Q+ +S A SD+
Sbjct: 101 DEYLNNGDEITEYFIRELHSLAVVGLQQEGDKTPGAYR----QHNVSIAQSDH------L 150
Query: 154 PLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTL 213
P + + ++ NR + L+ I + H F IHPF +GNGR RLLT
Sbjct: 151 PPDHIHVPDYMSELTAFINR--ADKPKYDLMKIALVHHRFGWIHPFGNGNGRTVRLLTYA 208
Query: 214 LLYRNGFYV---GKYISLEAKIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTVLA 270
LL + GF V G+ ++ A +++ YY L A G G E+ ++ + + L
Sbjct: 209 LLIKYGFNVQAGGRVLNPTAVFCNDRERYYSMLSLADKGTERGLEEWCLYVLSGISSELK 268
Query: 271 AYRDFADR-FALVEIKLPALE-TVRRAALN-----------KIGRFTKQDIRELCPSLSI 317
+ F +I PA++ + R +N ++G D+R P +
Sbjct: 269 KVDQLTNHAFLSTKILYPAIDFSSERGLINPLESKVLKRAVELGTIKAGDLRTALPDMKP 328
Query: 318 SSIEGGLRKLVSAGELK 334
+ + L KL+ G L+
Sbjct: 329 AQVTYQLGKLIDRGLLQ 345
>gi|37527785|ref|NP_931130.1| hypothetical protein plu3930 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787221|emb|CAE16302.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 386
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 175 IGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLL-YRNGFYVGKYISLEAKIA 233
+ + ++ PLIA +F ++F IHPF DGNGRM RL TL+L + N + ++I +E+ +
Sbjct: 201 LDSTDIHPLIASCIFHYEFEFIHPFADGNGRMGRLWQTLILNHWNPLF--EFIPVESLVY 258
Query: 234 KNKDLYYDALGRAQIGWHEGEEDVVPFIKYLL 265
+++ YY A I D PFI+++L
Sbjct: 259 EHQAHYYQA-----INLSSQLVDCAPFIEFML 285
>gi|119857519|ref|ZP_01638947.1| filamentation induced by cAMP protein Fic [Pseudomonas putida W619]
gi|119816056|gb|EAX18804.1| filamentation induced by cAMP protein Fic [Pseudomonas putida W619]
Length = 507
Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats.
Identities = 51/233 (21%), Positives = 101/233 (43%), Gaps = 38/233 (16%)
Query: 40 PEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNII 99
P +++ + A + T+ S AIE T + ++ +K ++
Sbjct: 183 PLMMDRAINWAYLHETQDSFAIEKEAPTEDKSRRFIK---------------------LL 221
Query: 100 HESFDAIPLSQNYILQLHKILYSHMNNPM--AGRIKSVQNYISAAYSDNHTEILFTPLAP 157
++ + PL+++Y++ L + + NP+ A + QN++S + + P P
Sbjct: 222 RQAHERHPLTEDYLVTLQN---ATVANPLDLAAAFRHEQNHLSNGMQ-GAAGVTYVPPPP 277
Query: 158 FETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYR 217
E ++ + N G +++PL+A + F+ +HPF DGNGR+SR L L
Sbjct: 278 GLCRELMESLMRFANE--GPTQIDPLVAASIISFGFVFLHPFMDGNGRLSRFLIHQALCH 335
Query: 218 NG-FYVGKYISLEAKIAKNKDLYYDAL-GRA-------QIGWHEGEEDVVPFI 261
+G G + + + + + LY + L G + Q+ W + E+ FI
Sbjct: 336 SGALENGLLLPVSVAMKREERLYLETLQGYSGPVREYWQVHWIDHEQFTFEFI 388
>gi|78062941|ref|YP_372849.1| Filamentation induced by cAMP protein Fic [Burkholderia sp. 383]
gi|77970826|gb|ABB12205.1| Filamentation induced by cAMP protein Fic [Burkholderia sp. 383]
Length = 251
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 70/244 (28%), Positives = 105/244 (43%), Gaps = 23/244 (9%)
Query: 15 DSGTLGLIAAIYKEAGKQEMYLKQRPEELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQL 74
DS L+ A+ + K + P L L E ++ T SNAIEG T + R ++
Sbjct: 2 DSSVSLLLEAVDADKAKLDAARPLPPHTLASLREKLMLEWTYHSNAIEG-NTLTLRETKV 60
Query: 75 VKEKTTPKN---RDEQEIAGYRDVLNIIHESFDAIP-LSQNYILQLHKILYSHMNNPMAG 130
V E T R+ E +RD + + E LS+ I +H ++ +++ AG
Sbjct: 61 VLEGITVGGKSLREHFEATNHRDAILYVEEIVGKQEMLSEWQIRNIHGLVLKGIDDGEAG 120
Query: 131 RIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFI 190
R + +N + A S + L P E + +D ++ G M P+
Sbjct: 121 RYRR-ENVVIAGASTTPPDFLHLPA---EMAALID-----WDTQAGAMH--PVARAAELH 169
Query: 191 HDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEAKIAKNKDLYYDALGRA-QIG 249
F+ IHPF DGNGR RLL L ++G Y I E ++A YYD L A IG
Sbjct: 170 TRFVKIHPFVDGNGRTGRLLLNFELMKSG-YPPAVIRKEDRLA-----YYDTLDEACTIG 223
Query: 250 WHEG 253
+ G
Sbjct: 224 DYSG 227
>gi|106887182|ref|ZP_01354498.1| Filamentation induced by cAMP protein Fic [Clostridium
phytofermentans ISDg]
gi|106765325|gb|EAT22088.1| Filamentation induced by cAMP protein Fic [Clostridium
phytofermentans ISDg]
Length = 306
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 20/200 (10%)
Query: 28 EAGKQEMYLKQRP---EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN- 83
+A K E+ K+RP ELE+L E I+ T SNAIEG T +++ T K
Sbjct: 71 DAKKAELQ-KRRPLTQGELERLREEFLIEFTYNSNAIEGNTLTLQETASVLEGITIDKKP 129
Query: 84 -RDEQEIAGYRDV-LNIIHESFDAIPLSQNYILQLHKILYSHMNNPM-AGRIKSVQNYIS 140
+D E+ G+++ L I+ + +S+ I ++H ++ ++ P G + + I
Sbjct: 130 LKDHLEVVGHKEAFLYIVELVSKQVQISEKVIKEIHSLIL--VDRPHDRGAYRQIPARIK 187
Query: 141 AAYSDNHTEILFTPLAPFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFN 200
+ ++ P PF ++++ ++ + + M + +A F +F IHPF
Sbjct: 188 GS--------VYIPPQPFLVPIQMEELMKDDSLRVNKMHLIERLA--RFHMEFERIHPFI 237
Query: 201 DGNGRMSRLLTTLLLYRNGF 220
DGNGR+ RLL L L + GF
Sbjct: 238 DGNGRIGRLLMNLELMQQGF 257
>gi|114045847|ref|YP_736397.1| filamentation induced by cAMP protein Fic [Shewanella sp. MR-7]
gi|113887289|gb|ABI41340.1| filamentation induced by cAMP protein Fic [Shewanella sp. MR-7]
Length = 371
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 11/218 (5%)
Query: 58 SNAIEGIVTTSTRIKQ-LVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAI--PLSQNYIL 114
S+AIEG + ++ L K+ +++ A + +I+ ++ + L+ IL
Sbjct: 62 SSAIEGEKLNAASVRSSLAKKLGVSEDKPYPTTAQTDGLADIMLDALKNLDTELTLERIL 121
Query: 115 QLHKIL----YSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSEALDKICEE 170
HK L Y+ N + G ++ + + + F L+ L + E
Sbjct: 122 GWHKQLFPRGYTLFNPVIGGALRGDTPMQVVSGRIDKPTVHFEALSRATLDAELSQFIEW 181
Query: 171 YNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLEA 230
+N ++ ++PLI + F+ +HP +DGNGR++RLLT L L + ++ ++
Sbjct: 182 FNASRQDLGLDPLIRAAITHLWFVTLHPLDDGNGRITRLLTDLALAQAEKRSIRFYAMSV 241
Query: 231 KIAKNKDLYYDALGRAQIGWHEGEEDVVPFIKYLLGTV 268
I + YYD L Q G D+ P++ + T+
Sbjct: 242 SILARRQAYYDILESTQ----RGNVDITPWLVWFFETL 275
>gi|17158508|ref|NP_477928.1| wsv406 [Shrimp white spot syndrome virus]
gi|15021570|gb|AAK77847.1|AF369029_178 ORF178 [shrimp white spot syndrome virus]
gi|17016802|gb|AAL33408.1| wsv406 [shrimp white spot syndrome virus]
gi|19482057|gb|AAL89333.1| WSSV465 [shrimp white spot syndrome virus]
Length = 259
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 110 QNYILQLHKILYSHMNNPMAGRIKSVQNYISAAYSDNHTEILFTPLAPFETSE----ALD 165
+ IL+ HKIL + G+ S + A + N+ E + P+ FET + ++
Sbjct: 107 ETMILETHKILMKGI--LPKGKNGSFSTCVRFAVNKNN-ERHYYPV--FETEKEAFNSIQ 161
Query: 166 KICEEYNRVIG--NMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNG 219
+ + YN ++ N +++ + A F+++FL +HPFNDGNGR +RLL + LL NG
Sbjct: 162 NLVDYYNEIVAHTNDQIKIIKACAYFMYNFLTLHPFNDGNGRTARLLYSFLLKGNG 217
>gi|57505046|ref|ZP_00370995.1| Fic family protein, putative [Campylobacter coli RM2228]
gi|57019172|gb|EAL55883.1| Fic family protein, putative [Campylobacter coli RM2228]
Length = 264
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 64/211 (30%), Positives = 94/211 (44%), Gaps = 23/211 (10%)
Query: 41 EELEKLVEIAKIQSTEASNAIEGIVTTSTRIKQLVKEKTTPKN--RDEQEIAGYRDVLN- 97
E + L E K++ T SNAIEG T K +++ T R+ E + ++
Sbjct: 25 ETKKSLEEDFKLRYTNDSNAIEGNTLTLFETKAVLEGMTIDGKSVREHLETINHSQAIDF 84
Query: 98 IIHESFDAIPLSQNYILQLHKILYSHMNNPMAGRIKSVQNYISAA--YSDNHTEILFTPL 155
+I + L+ I LH+I+ +++ AG ++V IS A NH ++F
Sbjct: 85 MIKLAKTNTALNALDIKSLHQIVLQSIDSRNAGVYRNVDVIISGAKHIPPNHLNVVF--- 141
Query: 156 APFETSEALDKICEEYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLL 215
E L+ E E+ P+I DF+ IHPF DGNGRMSRLL L
Sbjct: 142 ---EMERFLNWYKNEAR------ELHPVIRASRVHIDFVGIHPFVDGNGRMSRLLLNYEL 192
Query: 216 YRNGFYVGKYISLEAKIAKNKDLYYDALGRA 246
+NG Y I AK+ Y++AL A
Sbjct: 193 VKNG-YPPINIKYSAKVQ-----YFEALEEA 217
>gi|37528688|ref|NP_932033.1| hypothetical protein plu4880 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36788127|emb|CAE17252.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 369
Score = 55.5 bits (132), Expect = 6e-06, Method: Composition-based stats.
Identities = 63/235 (26%), Positives = 98/235 (41%), Gaps = 35/235 (14%)
Query: 58 SNAIEGIVTTSTRIKQLVKEKTTPKNRDEQEIAGYRDVLNIIHESFDAI---PLSQNYIL 114
S+ IE IVTTS ++ Q +E + + +E YR L +E F + PL N +
Sbjct: 66 SSEIENIVTTSDKLFQYAQEDSL-ADPATKEALRYRTAL---YEGFIQLTRRPLCTNTAI 121
Query: 115 QLHKILYSHMNNPMAGRIKSVQNYI----SAAYSDNHT-EILFTPLAPFETSEALDKICE 169
++ R+K+V I S+ T EI++TP P S+ D +
Sbjct: 122 EV------------CSRLKAVDMNIRKVPGTTLSNQATGEIIYTP--PEGESQIRDLLSN 167
Query: 170 EYNRVIGNMEVEPLIAIPVFIHDFLCIHPFNDGNGRMSRLLTTLLLYRNGFYVGKYISLE 229
+ ++PLI + + + F IHPF DGNGR R++ L L + L
Sbjct: 168 WEQFLHAEDGIDPLIKMAIAHYQFEAIHPFTDGNGRTGRIINILYLIEQQLLTLPILYLT 227
Query: 230 AKIAKNKDLYYDALGRAQIG--WHEGEEDVVPFIKYLLGTVLAAYRDFADRFALV 282
I ++K YY L + W E +I Y+L V + D+ A V
Sbjct: 228 CYIVQHKSDYYRLLSQVTAAGKWEE-------WIIYMLTAVEQTAKWTTDKIAAV 275
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.319 0.137 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,251,851,989
Number of Sequences: 5470121
Number of extensions: 51748495
Number of successful extensions: 144304
Number of sequences better than 1.0e-05: 290
Number of HSP's better than 0.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 240
Number of HSP's that attempted gapping in prelim test: 144032
Number of HSP's gapped (non-prelim): 298
length of query: 348
length of database: 1,894,087,724
effective HSP length: 133
effective length of query: 215
effective length of database: 1,166,561,631
effective search space: 250810750665
effective search space used: 250810750665
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)