R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|5903100|gb|AAD55658.1|AC008017_31 (AC008017) Highly similar to
ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Arabidopsis thaliana]
Length = 245
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | 245
0 50 100 150 200
Plus Strand HSPs:
Score = 455 (160.2 bits), Expect = 4.6e-42, P = 4.6e-42
Identities = 83/97 (85%), Positives = 93/97 (95%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNRI 524
QGKMS LMINDIDAGLGRFG TQMTVNNQIVVGTLMNL+DNPTRVSVGQ+WRE+D+ NR+
Sbjct: 39 QGKMSVLMINDIDAGLGRFGETQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRV 98
Query: 525 PIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
P+IVTGNDFSTLYAPLIR+GRM+KFYWQP +EDI+NI
Sbjct: 99 PLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNI 135
>gi|10719703|gb|AAG22094.1| (AF305876) ribulose 1,5-bisphosphate
carboxylase/oxygenase activase precursor [Zea mays]
Length = 308
Frame 3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | | | 308
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 328 (115.5 bits), Expect = 1.3e-28, P = 1.3e-28
Identities = 63/97 (64%), Positives = 76/97 (78%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKMSCL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + D R
Sbjct: 90 KGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPR 148
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 149 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 186
>gi|266893|sp|Q01587|RCA_CUCSA RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|322416|pir||S28172 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) - cucumber >gi|18284|emb|CAA47906.1| (X67674) rubisco
activase [Cucumis sativus]
Length = 413
Frame 3 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 413
0 150 300
__________________
Annotated Domains:
DOMO DM01630: 1..96
DOMO DM01541: 98..292
DOMO DM01443: RUBISCOACTIVASECHAIN 294..412
Entrez np-binding site: ATP (BY SIMILARITY). 162..169
PRODOM PD133488: RCA_CUCSA 1..34
PRODOM PD003963: RCA(6) 36..126
PRODOM PD003741: RCA(6) 128..409
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 162..169
__________________
Plus Strand HSPs:
Score = 324 (114.1 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 63/97 (64%), Positives = 75/97 (77%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 216 KGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPR 274
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRMDKFYW P +ED + I
Sbjct: 275 VPIIVTGNDFSTLYAPLIRDGRMDKFYWAPTREDRIGI 312
>gi|3687652|gb|AAC62207.1| (AF047352) rubisco activase precursor [Datisca
glomerata]
Length = 373
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 373
0 150 300
Plus Strand HSPs:
Score = 324 (114.1 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 62/97 (63%), Positives = 76/97 (78%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKMSCL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 219 KGKMSCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPR 277
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 278 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 315
>gi|3687676|gb|AAC62215.1| (AF052424) rubisco activase precursor [Datisca
glomerata]
Length = 244
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 244
0 50 100 150 200
Plus Strand HSPs:
Score = 324 (114.1 bits), Expect = 3.5e-28, P = 3.5e-28
Identities = 62/97 (63%), Positives = 76/97 (78%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKMSCL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 90 KGKMSCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPR 148
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 149 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 186
>gi|9832973|gb|AAC97932.2| (AF084478) ribulose-1,5-bisphosphate
carboxylase/oxygenase activase precursor [Zea mays]
Length = 433
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 323 (113.7 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 62/97 (63%), Positives = 75/97 (77%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + D R
Sbjct: 215 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPR 273
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 274 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 311
>gi|10720252|sp|Q9ZT00|RCA_MAIZE RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
Length = 433
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 323 (113.7 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 62/97 (63%), Positives = 75/97 (77%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + D R
Sbjct: 215 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPR 273
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 274 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 311
>gi|3914603|sp|P93431|RCA_ORYSA RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|7438148|pir||T04160 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) precursor - rice >gi|1778414|gb|AAC28134.1| (U74321)
ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
sativa]
Length = 432
Frame 3 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 432
0 150 300
__________________
Annotated Domains:
Entrez np-binding site: ATP (POTENTIAL). 156..163
PRODOM PD017953: Q40072(1) Q40073(1) RCA(1) 1..22
PRODOM PD003963: RCA(6) 24..120
PRODOM PD003741: RCA(6) 122..405
PRODOM PD133483: RCA_ORYSA 407..431
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 156..163
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 31..38
PROSITE HOMEOBOX_1: 'Homeobox' domain signature. 336..359
__________________
Plus Strand HSPs:
Score = 319 (112.3 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 61/97 (62%), Positives = 75/97 (77%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + D R
Sbjct: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPR 267
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 268 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGV 305
>gi|8918359|dbj|BAA97583.1| (AB034698) RuBisCO activase large isoform precursor
[Oryza sativa]
Length = 466
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 466
0 150 300 450
Plus Strand HSPs:
Score = 319 (112.3 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 61/97 (62%), Positives = 75/97 (77%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + D R
Sbjct: 210 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPR 268
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGV 306
>gi|8918361|dbj|BAA97584.1| (AB034748) RuBisCO activase small isoform precursor
[Oryza sativa]
Length = 433
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 319 (112.3 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 61/97 (62%), Positives = 75/97 (77%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + D R
Sbjct: 210 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NPR 268
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 269 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGV 306
>gi|12620881|gb|AAG61120.1| (AF329934) ribulose-1,5-bisphosphate
carboxylase/oxygenase activase 1 [Gossypium hirsutum]
Length = 438
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 438
0 150 300
Plus Strand HSPs:
Score = 319 (112.3 bits), Expect = 1.2e-27, P = 1.2e-27
Identities = 61/97 (62%), Positives = 75/97 (77%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 222 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPR 280
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 281 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 318
>gi|100380|pir||S25484 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
(clone TA1.1) - common tobacco (fragment) >gi|19992|emb|CAA78704.1|
(Z14981) ribulose bisphosphate carboxylase activase [Nicotiana
tabacum]
Length = 232
Frame 3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | 232
0 50 100 150 200
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 60/97 (61%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+G M CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 16 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NAR 74
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 75 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 112
>gi|7438144|pir||T01003 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
T5I7.3, splice form 2 - Arabidopsis thaliana
>gi|166835|gb|AAA20203.1| (M86720) ribulose bisphosphate
carboxylase/oxygenase activase [Arabidopsis thaliana]
>gi|2642170|gb|AAB87137.1| (AC003000) Rubsico activase [Arabidopsis
thaliana]
Length = 446
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 446
0 150 300
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 60/97 (61%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 219 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NAR 277
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PII TGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 278 VPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 315
>gi|445628|prf||1909374A RuBisCO activase [Nicotiana tabacum]
Length = 383
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 383
0 150 300
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 60/97 (61%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+G M CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 164 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NAR 222
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 223 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 260
>gi|12643757|sp|Q40460|RCA1_TOBAC RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE 1, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE 1) (RA 1)
>gi|1006835|gb|AAA78277.1| (U35111) rubisco activase precursor
[Nicotiana tabacum]
Length = 442
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 442
0 150 300
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 60/97 (61%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+G M CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 223 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NAR 281
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 282 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 319
>gi|10720247|sp|O49074|RCA_LYCPN RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|2707330|gb|AAC15236.1| (AF037361) rubisco activase
[Lycopersicon pennellii]
Length = 459
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 60/97 (61%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+G M CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 218 KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NAR 276
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 277 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 314
>gi|10720248|sp|O64981|RCA_PHAVU RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|7438145|pir||T10815 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) Rca1 - kidney bean >gi|3033513|gb|AAC12868.1|
(AF041068) rubisco activase [Phaseolus vulgaris]
Length = 441
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 441
0 150 300
Plus Strand HSPs:
Score = 313 (110.2 bits), Expect = 5.1e-27, P = 5.1e-27
Identities = 61/97 (62%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM L IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + D R
Sbjct: 223 KGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKED-NAR 281
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 282 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 319
>gi|12643259|sp|P10896|RCA_ARATH RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|7438143|pir||T01002 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) T5I7.3, splice form 1 - Arabidopsis thaliana
>gi|166834|gb|AAA20202.1| (M86720) ribulose bisphosphate
carboxylase/oxygenase activase [Arabidopsis thaliana]
>gi|2642155|gb|AAB87122.1| (AC003000) Rubisco activase [Arabidopsis
thaliana] >gi|11762250|gb|AAG40401.1|AF325049_1 (AF325049)
At2g39730 [Arabidopsis thaliana]
Length = 474
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 474
0 150 300 450
Plus Strand HSPs:
Score = 314 (110.5 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 60/97 (61%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 219 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NAR 277
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PII TGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 278 VPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 315
>gi|10720253|sp|Q42450|RCAB_HORVU RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE B, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE B) (RA B)
>gi|100616|pir||A23703 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) B precursor - barley >gi|167093|gb|AAA62703.1|
(M55448) ribulose 1,5-bisphosphate carboxylase activase [Hordeum
vulgare] >gi|167095|gb|AAA63162.1| (M55449) ribulose
1,5-bisphosphate carboxylase activase [Hordeum vulgare]
Length = 425
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 425
0 150 300
Plus Strand HSPs:
Score = 311 (109.5 bits), Expect = 8.3e-27, P = 8.3e-27
Identities = 60/97 (61%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++D PT V + + + + R
Sbjct: 206 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEE-NPR 264
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 265 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 302
>gi|12643758|sp|Q40565|RCA2_TOBAC RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE 2, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE 2) (RA 2)
>gi|100381|pir||S25483 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) (clone JQ4) - common tobacco
>gi|19990|emb|CAA78703.1| (Z14980) ribulose bisphosphate
carboxylase activase [Nicotiana tabacum]
Length = 439
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 439
0 150 300
Plus Strand HSPs:
Score = 310 (109.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 59/97 (60%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+G + CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 223 KGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NAR 281
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 282 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 319
>gi|10720250|sp|Q06721|RCA_ANASC RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE (RUBISCO ACTIVASE) (RA) >gi|485516|pir||S33627
ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
sp. (strain CA) >gi|296414|emb|CAA48129.1| (X67942) ribulose
1,5-bisphosphate carboxylase/oxygenase activase [Anabaena sp.]
Length = 415
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 415
0 150 300
Plus Strand HSPs:
Score = 310 (109.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 60/98 (61%), Positives = 77/98 (78%), Frame = +3
Query: 342 IQGKMSCLMINDIDAGLGRFGN-TQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTN 518
++GKM LMIND+DAG GRF TQ TVN Q+V TLMN++DNPT V + + +S
Sbjct: 91 VRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSY-DSTPLR 149
Query: 519 RIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
R+PIIVTGNDFSTLYAPLIRDGRM+KFYW+P++++ + I
Sbjct: 150 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGI 188
>gi|3914605|sp|Q40281|RCA_MALDO RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|541930|pir||S39551 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) - apple tree >gi|415852|emb|CAA79857.1| (Z21794)
ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus
domestica]
Length = 437
Frame 3 hits (HSPs): ____________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 437
0 150 300
__________________
Annotated Domains:
Entrez np-binding site: ATP (POTENTIAL). 165..172
PRODOM PD007760: RCA(3) 1..35
PRODOM PD003963: RCA(6) 37..129
PRODOM PD003741: RCA(6) 131..415
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 165..172
__________________
Plus Strand HSPs:
Score = 310 (109.1 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 60/97 (61%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM L IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 219 KGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPR 277
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 278 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 315
>gi|7960277|gb|AAF71272.1|AF251264_1 (AF251264) ribulose bisphosphate
carboxylase activase B [Triticum aestivum]
Length = 432
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 432
0 150 300
Plus Strand HSPs:
Score = 309 (108.8 bits), Expect = 1.4e-26, P = 1.4e-26
Identities = 60/97 (61%), Positives = 73/97 (75%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++D PT V + + + R
Sbjct: 213 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQFPGMYNKEE-NPR 271
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 272 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 309
>gi|1805719|emb|CAA71667.1| (Y10657) Rubisco activase [Chlorococcum littorale]
Length = 403
Frame 3 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 403
0 150 300
Plus Strand HSPs:
Score = 307 (108.1 bits), Expect = 2.2e-26, P = 2.2e-26
Identities = 58/97 (59%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM L IND+DAG GR G TQ TVNNQ+V TLMN++DNPT V + ++E + R
Sbjct: 186 KGKMCSLFINDLDAGAGRMGMGTQYTVNNQMVNATLMNIADNPTNVQLPGVYKEVQIP-R 244
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PI+ TGNDFSTLYAPLIRDGRM+K+YW P +ED + +
Sbjct: 245 VPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGV 282
>gi|10720249|sp|O98997|RCA_PHAAU RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|8954287|gb|AAD20019.2| (AF126870) rubisco activase [Vigna
radiata]
Length = 439
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 439
0 150 300
Plus Strand HSPs:
Score = 307 (108.1 bits), Expect = 2.2e-26, P = 2.2e-26
Identities = 59/99 (59%), Positives = 75/99 (75%), Frame = +3
Query: 339 LIQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVT 515
+ +GKM L IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + +
Sbjct: 219 IAKGKMCALFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-N 277
Query: 516 NRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
R+PIIVTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 278 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGV 317
>gi|12620883|gb|AAG61121.1|AF329935_1 (AF329935) ribulose-1,5-bisphosphate
carboxylase/oxygenase activase 2 [Gossypium hirsutum]
Length = 435
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 435
0 150 300
Plus Strand HSPs:
Score = 307 (108.1 bits), Expect = 2.2e-26, P = 2.2e-26
Identities = 59/97 (60%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM L IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 180 KGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPR 238
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PIIVTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 239 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGV 276
>gi|100614|pir||B23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
A long form precursor - barley (fragment) >gi|167089|gb|AAA62701.1|
(M55446) ribulose 1,5-bisphosphate carboxylase activase [Hordeum
vulgare]
Length = 426
Frame 3 hits (HSPs): _____________
Annotated Domains: __
__________________________________________________
Database sequence: | | | | 426
0 150 300
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 117..124
__________________
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 58/97 (59%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++D PT V + + + + R
Sbjct: 171 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRE-NPR 229
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PI+VTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 230 VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGV 267
>gi|100615|pir||C23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
A short form precursor - barley >gi|167091|gb|AAA62702.1| (M55447)
ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
Length = 427
Frame 3 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 427
0 150 300
__________________
Annotated Domains:
DOMO DM01630: 2..89
DOMO DM01541: 91..285
DOMO DM01443: RUBISCOACTIVASECHAIN 287..425
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 155..162
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 31..38
__________________
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 58/97 (59%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++D PT V + + + + R
Sbjct: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRE-NPR 267
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PI+VTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 268 VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGV 305
>gi|7438146|pir||T06177 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
A1 - barley >gi|167096|gb|AAA63163.1| (M55449) ribulose
1,5-bisphosphate carboxylase activase [Hordeum vulgare]
Length = 427
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 427
0 150 300
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 58/97 (59%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++D PT V + + + + R
Sbjct: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRE-NPR 267
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PI+VTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 268 VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGV 305
>gi|4261547|gb|AAD13841.1|S45033_11 (S45033) rubisco activase [Spinacia
oleracea]
Length = 435
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 435
0 150 300
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 2.8e-26, P = 2.8e-26
Identities = 59/99 (59%), Positives = 74/99 (74%), Frame = +3
Query: 339 LIQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVT 515
+ +GKM L IND++ G GR G T Q TVNNQ+V TLMN++DNPT V + + + D
Sbjct: 215 IAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQD-N 273
Query: 516 NRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
R+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 274 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 313
>gi|12643756|sp|Q40073|RCAA_HORVU RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE A, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE A) (RA A)
>gi|7438147|pir||T06176 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) A2 - barley >gi|167097|gb|AAA63164.1| (M55449)
ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
Length = 464
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 464
0 150 300 450
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 4.1e-26, P = 4.1e-26
Identities = 58/97 (59%), Positives = 74/97 (76%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++D PT V + + + + R
Sbjct: 209 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRE-NPR 267
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PI+VTGNDFSTLYAPLIRDGRM+KFYW P ++D + +
Sbjct: 268 VPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGV 305
>gi|132167|sp|P23489|RCA_CHLRE RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|320539|pir||A45507 ribulose-bisphosphate carboxylase activase
(EC 6.3.4.-) precursor - Chlamydomonas reinhardtii
>gi|167434|gb|AAA33091.1| (M62962) ribulose 1,5-bisphosphate
carboxylase/oxygenase activase [Chlamydomonas reinhardtii]
>gi|227783|prf||1710353A RuBisCO activase [Chlamydomonas
reinhardtii]
Length = 408
Frame 3 hits (HSPs): _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 408
0 150 300
__________________
Annotated Domains:
DOMO DM01630: 1..62
DOMO DM01541: 64..268
DOMO DM01443: RUBISCOACTIVASECHAIN 270..407
Entrez np-binding site: ATP (POTENTIAL). 138..145
PRODOM PD003963: RCA(6) 1..102
PRODOM PD003741: RCA(6) 104..387
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 138..145
__________________
Plus Strand HSPs:
Score = 304 (107.0 bits), Expect = 4.6e-26, P = 4.6e-26
Identities = 56/97 (57%), Positives = 75/97 (77%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+G+M L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V + ++ ++ R
Sbjct: 192 KGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIP-R 250
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PI+ TGNDFSTLYAPLIRDGRM+K+YW P +ED + +
Sbjct: 251 VPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGV 288
>gi|12643998|sp|P10871|RCA_SPIOL RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE
ACTIVASE, CHLOROPLAST PRECURSOR (RUBISCO ACTIVASE) (RA)
>gi|4261546|gb|AAD13840.1|S45033_1 (S45033) ribulosebisphosphate
carboxylase/oxygenase activase [Spinacia oleracea]
Length = 472
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | 472
0 150 300 450
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 4.8e-26, P = 4.8e-26
Identities = 59/99 (59%), Positives = 74/99 (74%), Frame = +3
Query: 339 LIQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVT 515
+ +GKM L IND++ G GR G T Q TVNNQ+V TLMN++DNPT V + + + D
Sbjct: 215 IAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQD-N 273
Query: 516 NRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
R+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 274 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 313
>gi|81488|pir||A31082 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
precursor - spinach >gi|170129|gb|AAA34038.1| (J03610) rubisco
activase precursor [Spinacia oleracea]
Length = 472
Frame 3 hits (HSPs): ____________
Annotated Domains: _______ _
__________________________________________________
Database sequence: | | | | | 472
0 150 300 450
__________________
Annotated Domains:
Entrez domain: transit peptide (chloroplast) 1..58
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 163..170
__________________
Plus Strand HSPs:
Score = 303 (106.7 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 58/99 (58%), Positives = 74/99 (74%), Frame = +3
Query: 339 LIQGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVT 515
+ +GKM L IND++ G GR G T Q TVNNQ+V TL+N++DNPT V + + + D
Sbjct: 215 IAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLLNIADNPTNVQLPGMYNKQD-N 273
Query: 516 NRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
R+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED + +
Sbjct: 274 ARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 313
>gi|6967045|emb|CAB72439.1| (AJ271896) rubisco activase [Pinus halepensis]
Length = 226
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 226
0 50 100 150 200
Plus Strand HSPs:
Score = 289 (101.7 bits), Expect = 1.8e-24, P = 1.8e-24
Identities = 56/87 (64%), Positives = 69/87 (79%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM L IND+DAG GR G+T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 140 KGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NPR 198
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYW 605
+PI+VTGNDFSTLYAPLIRDGRM+KFYW
Sbjct: 199 VPIVVTGNDFSTLYAPLIRDGRMEKFYW 226
>gi|81660|pir||S04048 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
precursor - Arabidopsis thaliana >gi|16471|emb|CAA32429.1| (X14212)
rubisco activase (AA 1 - 473) [Arabidopsis thaliana]
Length = 473
Frame 3 hits (HSPs): ___________
Annotated Domains: __
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 165..172
__________________
Plus Strand HSPs:
Score = 281 (98.9 bits), Expect = 3.5e-23, P = 3.5e-23
Identities = 56/97 (57%), Positives = 70/97 (72%), Frame = +3
Query: 345 QGKMSCLMINDIDAGLGRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNR 521
+GKM CL IND+DAG GR G T Q TVNNQ+V TLMN++DNPT V + + + + R
Sbjct: 219 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEE-NAR 277
Query: 522 IPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNI 635
+PII TGNDFSTLY PLI DGRM+KF P +ED + +
Sbjct: 278 VPIICTGNDFSTLYGPLILDGRMEKFLTGPTREDRIGV 315
>gi|100382|pir||S25482 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
(clone JQ11) - common tobacco (fragment) >gi|19988|emb|CAA78702.1|
(Z14979) ribulose bisphosphate carboxylase activase [Nicotiana
tabacum]
Length = 206
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 257 (90.5 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 50/81 (61%), Positives = 62/81 (76%), Frame = +3
Query: 393 GRFGNT-QMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNRIPIIVTGNDFSTLYAP 569
GR G T Q TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDFSTLYAP
Sbjct: 3 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQE-NARVPIIVTGNDFSTLYAP 61
Query: 570 LIRDGRMDKFYWQPNQEDILNI 635
LIRDGRM+KFYW P +ED + +
Sbjct: 62 LIRDGRMEKFYWAPTREDRIGV 83
>gi|386495|gb|AAB27310.1| ribulose-1,5-bisphosphate carboxylase/oxygenase
activase, Rubisco activase {ATP gamma-phosphate binding domain,
internal fragment, region III} {EC 4.1.1.39} [Nicotiana
tabacum=tobacco, cv. KY-14, leaves, Peptide Partial, 18 aa]
Length = 18
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | 18
0
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.016, P = 0.016
Identities = 16/18 (88%), Positives = 17/18 (94%), Frame = +3
Query: 522 IPIIVTGNDFSTLYAPLI 575
+PIIVTGNDFSTLY PLI
Sbjct: 1 VPIIVTGNDFSTLYXPLI 18
>gi|482299|pir||A37458 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-)
- common tobacco (fragments)
Length = 40
Frame 3 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | 40
0 20
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.016, P = 0.016
Identities = 16/18 (88%), Positives = 17/18 (94%), Frame = +3
Query: 522 IPIIVTGNDFSTLYAPLI 575
+PIIVTGNDFSTLY PLI
Sbjct: 23 VPIIVTGNDFSTLYXPLI 40
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.346 0.154 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.366 0.164 0.674
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.377 0.171 0.625
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.156 0.486
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.377 0.170 0.637
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.345 0.149 0.503
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 211 211 10. 77 3 12 22 0.10 35
31 0.11 38
+2 0 212 212 10. 77 3 12 22 0.10 35
31 0.11 38
+1 0 212 212 10. 77 3 12 22 0.10 35
31 0.11 38
-1 0 212 212 10. 77 3 12 22 0.10 35
31 0.11 38
-2 0 212 212 10. 77 3 12 22 0.10 35
31 0.11 38
-3 0 211 211 10. 77 3 12 22 0.10 35
31 0.11 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 39
No. of states in DFA: 596 (59 KB)
Total size of DFA: 216 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 179.65u 1.03s 180.68t Elapsed: 00:00:37
Total cpu time: 179.71u 1.05s 180.76t Elapsed: 00:00:37
Start: Thu Jan 17 18:07:08 2002 End: Thu Jan 17 18:07:45 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000