BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query                position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence             begin  end (left)    repeat   class/family  begin  end (left)  ID

  180   0.0  0.0  0.0  'D12G06_N18_13.ab1'    492  511  (215) +  (TTC)n   Simple_repeat     1   20    (0)      

Alignments:
180  0.00  0.00  0.00  'D12G06_N18_13.ab1'  492  511  (215)  C  (GAA)n#Simple_repeat  (160)  20  1  0

  'D12G06_N18_13.    492 TCTTCTTCTTCTTCTTCTTC 511    
                                             
C (GAA)n#Simple_r     20 TCTTCTTCTTCTTCTTCTTC 1      

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 20), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>'D12G06_N18_13.ab1'
CCAACAAAATTTGCCAATTGCCATTTCAATCCTCAGTTTCTTTCTTCAAC
GTTTCCATCATACACAGNATCCCAATCCTCTCTCAAGCCCTAATTTCCCC
TCATTTCCATGGCCACAGAAGAGCCCACTGTCGCGGTGGAACCCGCTCCC
GAACCTGCCTCCGCCGATCCTCCCCTGGAGGAGAAGGAGGAGACCAAACC
TGAAGCCAAGGCTAAGAAAACCAAGGAGCCCAAACCTAAAAAGGTTTCCA
GACCTCGCAACCCTCCCACTCATCCTTCCTACGAAGAGATGGTTAAAGAC
GCAATTACCTCGCTGAAGGAGAAAACCGGTTCGAGCCAATACGCGATTGC
GAAGTTCATCGAGGAGAAGCACAAGCAGCTTCCACCGAACTTCAAGAAGC
TTCTTCTCTACCATTGAAGAAGCTCGTCGCCGCCGGAAAACTCGTCAAAG
TCAAAGGCTCGTTCAAGCTCCCACCTACCAGACCTGCTGCANNNNNNNNN
NNNNNNNNNNNGCCGGCAAAGAAGAAAAAGCCCGCAGCTGCCAAGTCCAA
GCCTAAGCCTAAGCCCAGGCCCGCTGCGAAAGCCAAGGATACTAAGGCAA
CTAAATCGAAGGCACCAGCTAAGCCCAAGCCAGCTGCTAAGCCTAAAGCC
AAAGCTCCAGCCAAGGCCAAACCCGCTGCTAAACCAAAGGCTTNTGCTGC
TGNCAAGCCCAAGCCTGCTGNCGCCA

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       726 bp
GC level:         52.49 %
bases masked:        20 bp (  2.75 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           20 bp     2.75 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'D12G06_N18_13.ab1'
        (726 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 21 Sequences     : less than 21 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 11863 1247 |===========================================================
   6310 10616 1203 |=========================================================
   3980  9413 1064 |==================================================
   2510  8349 1045 |=================================================
   1580  7304  987 |===============================================
   1000  6317  807 |======================================
    631  5510  684 |================================
    398  4826  573 |===========================
    251  4253  496 |=======================
    158  3757  461 |=====================
    100  3296  419 |===================
   63.1  2877  324 |===============
   39.8  2553  263 |============
   25.1  2290  255 |============
   15.8  2035  196 |=========
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 1839  <<<<<<<<<<<<<<<<<
   10.0  1839  194 |=========
   6.31  1645  149 |=======
   3.98  1496  146 |======
   2.51  1350  141 |======
   1.58  1209  101 |====
   1.00  1108   95 |====
   0.63  1013  103 |====
   0.40   910   68 |===
   0.25   842   62 |==
   0.16   780   50 |==
   0.10   730   56 |==
  0.063   674   58 |==
  0.040   616   36 |=
  0.025   580   29 |=
  0.016   551   31 |=
  0.010   520   34 |=
 0.0063   486   31 |=
 0.0040   455   34 |=
 0.0025   421   19 |:
 0.0016   402   19 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|121953|sp|P08283|H1_PEAHISTONE H1 >gi|81905|pir||S... +1   346  9.9e-49   2
gi|5230785|gb|AAD41007.1|AF107024_1(AF107024) histone... +3   244  2.3e-43   2
gi|121958|sp|P27806|H1_WHEATHISTONE H1 >gi|283024|pir... +3   221  1.4e-37   2
gi|121907|sp|P26569|H12_ARATHHISTONE H1.2 >gi|70682|p... +1   236  1.3e-35   2
gi|2641211|gb|AAB86857.1|(AF031547) histone-like prot... +1   240  1.2e-32   2
gi|3204127|emb|CAA07233.1|(AJ006767) histone H1 [Cice... +1   212  1.2e-32   2
gi|7439662|pir||T06392histone H1 - tomato >gi|3021487... +1   312  6.4e-27   1
gi|6681423|dbj|BAA88671.1|(AB029614) histone H1 [Nico... +1   307  2.2e-26   1
gi|4996567|dbj|BAA78535.1|(AB021873) ribosome-sedimen... +1   302  7.4e-26   1
gi|729665|sp|P40262|H1E_CHIPAHISTONE H1E >gi|457099|g... +1   166  2.3e-25   2
gi|729666|sp|P40278|H1E_CHITEHISTONE H1E >gi|469183|g... +1   166  5.4e-25   2
gi|699583|gb|AAA63154.1|(U21211) histone H1-I [Chiron... +1   163  6.2e-25   2
gi|4106696|dbj|BAA36284.1|(AB021872) ribosome-sedimen... +1   293  6.6e-25   1
gi|585238|sp|Q08864|H11_VOLCAHISTONE H1-I >gi|541544|... +1   190  2.7e-24   2
gi|1084419|pir||S53502histone H1 - common tobacco >gi... +1   287  2.9e-24   1
gi|454105|gb|AAC14379.1|(L28724) histone H1-I-1 [Chir... +1   168  2.4e-23   2
gi|585241|sp|P37218|H1_LYCESHISTONE H1 >gi|629668|pir... +1   269  2.3e-22   1
gi|729655|sp|P40264|H12_GLYBAHISTONE H1-II >gi|457120... +1   162  1.0e-21   2
gi|454121|gb|AAC14380.1|(L28725) histone H1-II-2 [Chi... +1   152  1.6e-21   2
gi|2564105|gb|AAC15914.1|(AF007904) histone H1 [Chaet... +3   172  1.8e-21   2
gi|2842461|emb|CAA11812.1|(AJ224071) histone 1 [Mytil... +3   149  1.8e-21   2
gi|729656|sp|P40265|H13_GLYBAHISTONE H1-III >gi|45712... +1   159  1.9e-21   2
gi|2842445|emb|CAA11813.1|(AJ224072) histone 1 [Mytil... +3   148  2.3e-21   2
gi|2842459|emb|CAA11811.1|(AJ224070) histone 1 [Mytil... +3   148  2.3e-21   2
gi|2842451|emb|CAA11816.1|(AJ224075) histone 1 [Mytil... +3   148  2.3e-21   2
gi|2232176|gb|AAC14376.1|(AF002680) histone H1-II-2 [... +1   151  6.0e-21   2
gi|454119|gb|AAC14387.1|(L28732) histone H1-II-1 [Chi... +1   161  7.9e-21   2
gi|535594|gb|AAC14383.1|(L28728) histone H1-II-1 [Chi... +1   156  8.2e-21   2
gi|6474950|dbj|BAA87331.1|(AB012694) variant of histo... +1   254  9.0e-21   1
gi|2118977|pir||S59589histone H1 - Chlamydomonas rein... +3   163  1.0e-20   2
gi|571480|gb|AAA98452.1|(U16726) histone H1 [Chlamydo... +3   163  1.2e-20   2
gi|2232182|gb|AAB62239.1|(AF002683) histone H1d [Chir... +1   150  1.4e-20   2
gi|6006363|dbj|BAA84793.1|(AP000559) ESTs AU078183(C6... +1   185  1.6e-20   2
gi|535593|gb|AAC14382.1|(L28727) histone H1-II-1 [Chi... +1   158  1.8e-20   2
gi|2842447|emb|CAA11814.1|(AJ224073) histone 1 [Mytil... +3   140  2.3e-20   2
gi|729660|sp|P40276|H1B_CHITEHISTONE H1B >gi|457103|g... +1   149  2.8e-20   2
gi|2232178|gb|AAC14377.1|(AF002681) histone H1-II-2 [... +1   150  5.6e-20   2
gi|121928|sp|P15870|H1D_STRPUHISTONE H1-DELTA >gi|853... +1   135  5.9e-20   2
gi|7494629|pir||T42231histone H1.1 - Caenorhabditis e... +3   144  6.0e-20   2
gi|633704|gb|AAC14381.1|(L28726) histone H1-III-1 [Ch... +1   152  6.7e-20   2
gi|121945|sp|P21895|H1_CHITHHISTONE H1 >gi|103006|pir... +1   149  8.8e-20   2
gi|462228|sp|P35060|H1_TIGCAHISTONE H1 >gi|1085852|pi... +3   134  1.1e-19   2
gi|6752901|gb|AAF27930.1|AF222804_1(AF222804) histone... +1   243  1.3e-19   1
gi|121902|sp|P26568|H11_ARATHHISTONE H1.1 >gi|1070594... +1   242  1.7e-19   1
gi|729653|sp|P40263|H11_GLYBAHISTONE H1-I >gi|457118|... +3   144  2.1e-19   2
gi|729654|sp|P40266|H11_GLYSAHISTONE H1-I >gi|457124|... +3   146  2.1e-19   2
gi|2623960|emb|CAA73171.1|(Y12599) histone H1 [Apium ... +1   241  2.1e-19   1
gi|84445|pir||S01817histone H1.1 - Caenorhabditis ele... +3   143  4.2e-19   2
gi|729664|sp|P40277|H1C_CHITEHISTONE H1C >gi|457105|g... +3   141  4.2e-19   2
gi|121950|sp|P23444|H1_MAIZEHISTONE H1 >gi|7439629|pi... +1   236  7.3e-19   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 1789 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|121953|sp|P08283|H1_PEA  HISTONE H1 >gi|81905|pir||S00033 histone H1.b -
            garden pea >gi|20762|emb|CAA29123.1| (X05636) H1 histone (AA 1-263)
            [Pisum sativum]
            Length = 265

Frame  3 hits (HSPs):                       _____________________________ 
Frame  1 hits (HSPs):   _____________________                             
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250

  Plus Strand HSPs:

 Score = 346 (121.8 bits), Expect = 9.9e-49, Sum P(2) = 9.9e-49
 Identities = 74/107 (69%), Positives = 80/107 (74%), Frame = +1

Query:   109 MATEEPTVAVEPAPEPASADP-----P-LEEKEETKPEA-KAKKTKEPKPKKVSRPRNPP 267
             MATEEP VAVE  PEP   +P     P + EKEE K E  K KK K  KPKK S+PRNP 
Sbjct:     1 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPA 60

Query:   268 THPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLL 408
             +HP+YEEM+KDAI SLKEK GSSQYAIAKFIEEK KQLP NFKKLLL
Sbjct:    61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLL 107

 Score = 189 (66.5 bits), Expect = 9.9e-49, Sum P(2) = 9.9e-49
 Identities = 56/105 (53%), Positives = 64/105 (60%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPT--RPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAK 587
             LKK VA+GKL+KVKGSFKL     +PA         AK K   + K+KP  KP+  A  K
Sbjct:   110 LKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAKTAAKAK---SVKAKPAAKPKAKAVVK 166

Query:   588 DTKATKSKA-PAKPKPAA-KPKAKAPAKAKP-AAKPKAXAA--XKPKPA 719
                A+K+KA  AKPK AA KPK  A AK KP AAKPKA      K KPA
Sbjct:   167 PKVASKAKAVAAKPKKAAAKPKTVA-AKTKPTAAKPKAVVKPKSKVKPA 214

 Score = 133 (46.8 bits), Expect = 7.6e-43, Sum P(2) = 7.6e-43
 Identities = 39/70 (55%), Positives = 42/70 (60%), Frame = +3

Query:   516 AKKKKPAAAKSKPKPKPRPAAKAKDTKAT-----KSKAPAKPKPAAKPKAKAPAKAKPAA 680
             A  KKPA AK    PK + AAKAK  KA      K+KA  KPK A+K KA A    K AA
Sbjct:   130 AAAKKPAVAK----PKAKTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAAA 185

Query:   681 KPKAXAAXKPKPAXA 725
             KPK  AA K KP  A
Sbjct:   186 KPKTVAA-KTKPTAA 199

 Score = 116 (40.8 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
 Identities = 44/119 (36%), Positives = 52/119 (43%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G  + ++   + A + P  K  A  K VK K     P  +P A        A K K  A
Sbjct:   123 KGSFKLSAAAKKPAVAKPKAKTAAKAKSVKAK-----PAAKPKAKAVVKPKVASKAKAVA 177

Query:   540 AK-SKPKPKPRP-AAKAKDTKATKSKAPAKPKPAAKPK--AKAPAKAKPAAKPKAX--AA 701
             AK  K   KP+  AAK K T A K KA  KPK   KP   AK   K  P  K  A    A
Sbjct:   178 AKPKKAAAKPKTVAAKTKPT-AAKPKAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKVA 236

Query:   702 XKPKP 716
              K  P
Sbjct:   237 AKKVP 241

 Score = 97 (34.1 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
 Identities = 40/131 (30%), Positives = 53/131 (40%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPP---TRPAAXXXXXXXPAKKKK 530
             +G  + ++   + A + P  K  A  K VK K + K       +P          AK KK
Sbjct:   123 KGSFKLSAAAKKPAVAKPKAKTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKK 182

Query:   531 PAA------AKSKP---KPKP--RPAAKAKDTKATKSKAPAKP-KPAAKPKAKAPAKAKP 674
              AA      AK+KP   KPK   +P +K K  K  K+     P K  A  K K  AK  P
Sbjct:   183 AAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVK-KVAAKKVP 241

Query:   675 AAKPKAXAAXKP 710
                 KA +   P
Sbjct:   242 VKSVKAKSVKSP 253

 Score = 90 (31.7 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
 Identities = 37/115 (32%), Positives = 47/115 (40%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKS 548
             A+A S + + A+    K +V      KV    K    +P          A K KP AAK 
Sbjct:   146 AKAKSVKAKPAAKPKAKAVVKP----KVASKAKAVAAKPKKAAAKPKTVAAKTKPTAAKP 201

Query:   549 K----PKPKPRPAAKAKDT-KATKSKAPAKPKPAAKPKAKAPA-KAKPAAKPKAXAAXK 707
             K    PK K +PA  AK + K T  K  A  K  A  K    + KAK    P    + K
Sbjct:   202 KAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKSPVKKVSVK 260


 >gi|5230785|gb|AAD41007.1|AF107024_1  (AF107024) histone H1 WH1B.1 [Triticum
            aestivum]
            Length = 275

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):   ____________________                              
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 275
                       0       50       100      150      200      250

  Plus Strand HSPs:

 Score = 244 (85.9 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
 Identities = 62/112 (55%), Positives = 68/112 (60%), Frame = +3

Query:   405 SLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKK-PA---AAKSKPK-PKPR 569
             S+ LKKLVA+GKL KVK S+KL              PA KKK PA   A K+K K P  +
Sbjct:   107 SVQLKKLVASGKLTKVKASYKLSAAAAKPKPAAKKKPAAKKKAPAKKTATKTKAKAPAKK 166

Query:   570 PAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
              AAK K     K+KA AKPK AAKPKAKAPAK K AAKPKA A  K  PA A
Sbjct:   167 SAAKPKAKAPAKTKAAAKPKAAAKPKAKAPAKTKAAAKPKAAAKPKGPPAKA 218

 Score = 240 (84.5 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
 Identities = 58/106 (54%), Positives = 70/106 (66%), Frame = +1

Query:   109 MATEEPTVAVEPAPE-PASADPPLEEKEETKP----EAKAKKTKEPKPKKVSRPRNP--- 264
             M+T+   VA  PAPE  A+ADP +E   E        AK  K K  K KK S PR P   
Sbjct:     1 MSTD--VVADVPAPEVAAAADPVVETTAEPAAGDANAAKETKAKAAKAKKPSAPRKPRAA 58

Query:   265 PTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK-QLPPNFKKLL 405
             P HP+Y EMV +AIT+LKE+TGSS YAIAKF+E+KHK  LP NF+K+L
Sbjct:    59 PAHPTYAEMVSEAITALKERTGSSPYAIAKFVEDKHKAHLPANFRKIL 106

 Score = 153 (53.9 bits), Expect = 8.1e-34, Sum P(2) = 8.1e-34
 Identities = 50/117 (42%), Positives = 58/117 (49%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             AS +L  A++ P K         K K   K   T+  A        AK K  A AK+K  
Sbjct:   124 ASYKLSAAAAKP-KPAAKKKPAAKKKAPAKKTATKTKAKAPAKKSAAKPKAKAPAKTKAA 182

Query:   558 PKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKA-KPAAK--P--KAXAAXKPKPA 719
              KP+ AAK K     K+KA AKPK AAKPK   PAKA K +AK  P   A AA   KPA
Sbjct:   183 AKPKAAAKPKAKAPAKTKAAAKPKAAAKPKGP-PAKAAKTSAKDAPGKNAGAAAPKKPA 240

 Score = 138 (48.6 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
 Identities = 38/66 (57%), Positives = 40/66 (60%), Frame = +3

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAA 701
             K K +   S    KP+PAAK K   A K KAPAK K A K KAKAPAK K AAKPKA A 
Sbjct:   121 KVKASYKLSAAAAKPKPAAKKKP--AAKKKAPAK-KTATKTKAKAPAK-KSAAKPKAKAP 176

Query:   702 XKPKPA 719
              K K A
Sbjct:   177 AKTKAA 182

 Score = 134 (47.2 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
 Identities = 47/122 (38%), Positives = 52/122 (42%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK---KPA 536
             +A A  T  +  +  P KK  A  K  K     K      AA       PAK K   KP 
Sbjct:   148 KAPAKKTATKTKAKAPAKKSAAKPK-AKAPAKTKAAAKPKAAAKPKAKAPAKTKAAAKPK 206

Query:   537 AAKSKPKPKPRPAAK--AKDTKATKSKAPAKPKPAA-KPKAKAPAKAKPAAKPKAXAAXK 707
             AA +KPK  P  AAK  AKD     + A A  KPAA KP  K     K AA  K  A  K
Sbjct:   207 AA-AKPKGPPAKAAKTSAKDAPGKNAGAAAPKKPAARKPPTKRSTPVKKAAPAKKAAPAK 265

Query:   708 PKPA 719
               PA
Sbjct:   266 KAPA 269

 Score = 134 (47.2 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
 Identities = 53/125 (42%), Positives = 56/125 (44%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             AA+     A   P  K  A  K    K   K P  + AA       PAK K  AAAK K 
Sbjct:   131 AAAKPKPAAKKKPAAKKKAPAKKTATKTKAKAPAKKSAAKPKAKA-PAKTK--AAAKPKA 187

Query:   555 KPKPRPAAKAKDTKATKSKAPAKPK--PA--AKPKAK-APAKAKPAAKPKAXAAXKP--- 710
               KP+  A AK   A K KA AKPK  PA  AK  AK AP K   AA PK  AA KP   
Sbjct:   188 AAKPKAKAPAKTKAAAKPKAAAKPKGPPAKAAKTSAKDAPGKNAGAAAPKKPAARKPPTK 247

Query:   711 -----KPA 719
                  K A
Sbjct:   248 RSTPVKKA 255

 Score = 88 (31.0 bits), Expect = 5.2e-27, Sum P(2) = 5.2e-27
 Identities = 35/101 (34%), Positives = 45/101 (44%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLV-KVKGSFKL--PPTRPAAXXXXXXXPAKKKK 530
             +  A+  +    +A++ P  K  A  K   K K + K   PP + AA       P K   
Sbjct:   174 KAPAKTKAAAKPKAAAKPKAKAPAKTKAAAKPKAAAKPKGPPAK-AAKTSAKDAPGKNAG 232

Query:   531 PAAAKSKP---KPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAK 653
              AA K KP   KP  + +   K     K  APAK  PAAK KAK
Sbjct:   233 AAAPK-KPAARKPPTKRSTPVKKAAPAKKAAPAKKAPAAK-KAK 274


 >gi|121958|sp|P27806|H1_WHEAT  HISTONE H1 >gi|283024|pir||S22322 histone H1 -
            wheat
            Length = 236

Frame  3 hits (HSPs):                         ____________________________
Frame  1 hits (HSPs):    _____________________    __________              
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       39..144
   DOMO                 DM00672: HISTONEH1                       146..235
   PFAM                 linker_histone: linker histone H1 and H5 55..126
   PRODOM               PD053177: H1_WHEAT                       1..54
   PRODOM               PD000373: H1(14) H11(5) H12(4)           56..103
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     126..235
__________________


  Plus Strand HSPs:

 Score = 221 (77.8 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 61/101 (60%), Positives = 65/101 (64%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             +KKLVAAGKL KVKGS+KL    PAA        A KKKPAA   KPK K  PA K    
Sbjct:   105 IKKLVAAGKLTKVKGSYKLAKA-PAAVKPKT---ATKKKPAA---KPKAKA-PAKK---- 152

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKP 716
               T +K+PAK K AAKPKAKAPAKAK  AKPKA A   PKP
Sbjct:   153 --TAAKSPAK-KAAAKPKAKAPAKAKAVAKPKAAAKKAPKP 190

 Score = 208 (73.2 bits), Expect = 1.4e-37, Sum P(2) = 1.4e-37
 Identities = 49/99 (49%), Positives = 62/99 (62%), Frame = +1

Query:   112 ATEEPTVAVEPAPEPASADPPLEEKEETKPE-AKAKKTKEPKPKKVSRPRNPPTHPSYEE 288
             A + P   VE A + A   P    K    P+ AKAKK+  PK     +PR  P HPSY E
Sbjct:     7 AADIPVPQVEVAADAAVDTPAANAKAPKAPKGAKAKKSTAPK-----KPRVTPAHPSYAE 61

Query:   289 MVKDAITSLKEKTGSSQYAIAKFIEEKHK-QLPPNFKKLLL 408
             MV +AI +LKE++GSS  AI KFIE+KH+  LP NF+K+LL
Sbjct:    62 MVSEAIAALKERSGSSTIAIGKFIEDKHEAHLPANFRKILL 102

 Score = 205 (72.2 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
 Identities = 59/105 (56%), Positives = 64/105 (60%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             +KKLVAAGKL KVKGS+KL    PAA        A KKKPAA      P  + AAK+   
Sbjct:   105 IKKLVAAGKLTKVKGSYKLAKA-PAAVKPKT---ATKKKPAAKPKAKAPAKKTAAKSPAK 160

Query:   594 KAT---KSKAPAKPKPAAKPKA---KAPA-KAKPAAKPKAXAAXKPKPA 719
             KA    K+KAPAK K  AKPKA   KAP  KAK AAK  A AA   KPA
Sbjct:   161 KAAAKPKAKAPAKAKAVAKPKAAAKKAPKPKAKAAAKKGAGAATPKKPA 209

 Score = 185 (65.1 bits), Expect = 8.1e-34, Sum P(2) = 8.1e-34
 Identities = 57/113 (50%), Positives = 62/113 (54%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAX---XXXXXXPAKKKK---PAAAKSKPKPKPRPA 575
             +KKLVAAGKL KVKGS+KL    PAA          PA K K   PA   +   P  + A
Sbjct:   105 IKKLVAAGKLTKVKGSYKLAKA-PAAVKPKTATKKKPAAKPKAKAPAKKTAAKSPAKKAA 163

Query:   576 AKAKDTKATKSKAPAKPKPAAK--PKAKAPAKAKP---AAKPKAXAAXKPKPAXA 725
             AK K     K+KA AKPK AAK  PK KA A AK    AA PK  AA KP P  A
Sbjct:   164 AKPKAKAPAKAKAVAKPKAAAKKAPKPKAKAAAKKGAGAATPKKPAARKP-PTKA 217

 Score = 174 (61.3 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 41/66 (62%), Positives = 44/66 (66%), Frame = +3

Query:   525 KKPAAAKSKPKPKPRPAAKAK---DTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAX 695
             K PAA K K   K +PAAK K     K T +K+PAK K AAKPKAKAPAKAK  AKPKA 
Sbjct:   125 KAPAAVKPKTATKKKPAAKPKAKAPAKKTAAKSPAK-KAAAKPKAKAPAKAKAVAKPKAA 183

Query:   696 AAXKPKP 716
             A   PKP
Sbjct:   184 AKKAPKP 190

 Score = 122 (42.9 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
 Identities = 44/96 (45%), Positives = 48/96 (50%), Frame = +3

Query:   417 KKLVAAGKLVKV--KGSFKLPPTRPAAXXXXXXXPAKKK---KP-AAAKSKPKPKPRPAA 578
             KK  AA    K   K +    P + AA       PAK K   KP AAAK  PKPK + AA
Sbjct:   137 KKKPAAKPKAKAPAKKTAAKSPAKKAAAKPKAKAPAKAKAVAKPKAAAKKAPKPKAKAAA 196

Query:   579 KAKDTKATKSKAPAKPKP---AAKPKAKAPAKAKPAAK 683
             K K   A   K PA  KP   AA P  KA A+ KPAAK
Sbjct:   197 K-KGAGAATPKKPAARKPPTKAATPVKKA-ARKKPAAK 232

 Score = 118 (41.5 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
 Identities = 38/99 (38%), Positives = 44/99 (44%), Frame = +3

Query:   417 KKLVAAGKLVKV--KGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKD 590
             KK  AA    K   K +    P + AA       PAK K  A  K+  K  P+P AKA  
Sbjct:   137 KKKPAAKPKAKAPAKKTAAKSPAKKAAAKPKAKAPAKAKAVAKPKAAAKKAPKPKAKAAA 196

Query:   591 TKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
              K   +  P KP  A KP  KA    K AA+ K  AA K K
Sbjct:   197 KKGAGAATPKKPA-ARKPPTKAATPVKKAARKKP-AAKKAK 235

 Score = 118 (41.5 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
 Identities = 42/100 (42%), Positives = 45/100 (45%), Frame = +3

Query:   417 KKLVAAGKLVKV--KGSFKLPPTRPAAXXXXXXXPAKKK---KP-AAAKSKPKPKPRPAA 578
             KK  AA    K   K +    P + AA       PAK K   KP AAAK  PKPK + AA
Sbjct:   137 KKKPAAKPKAKAPAKKTAAKSPAKKAAAKPKAKAPAKAKAVAKPKAAAKKAPKPKAKAAA 196

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXK 707
             K K   A   K PA  KP  K  A  P K     KP A  A K
Sbjct:   197 K-KGAGAATPKKPAARKPPTK--AATPVKKAARKKPAAKKAKK 236

 Score = 88 (31.0 bits), Expect = 1.2e-23, Sum P(2) = 1.2e-23
 Identities = 35/94 (37%), Positives = 43/94 (45%), Frame = +3

Query:   372 QAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSK 551
             +A +   + A+  P KK  A  K  K     K    +P A       P  K K AA K  
Sbjct:   145 KAKAPAKKTAAKSPAKKAAAKPK-AKAPAKAKAV-AKPKAAAKKA--PKPKAKAAAKKGA 200

Query:   552 PKPKPR-PAAKAKDTKA-TKSKAPAKPKPAAKPKAK 653
                 P+ PAA+   TKA T  K  A+ KPAAK KAK
Sbjct:   201 GAATPKKPAARKPPTKAATPVKKAARKKPAAK-KAK 235

 Score = 66 (23.2 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 24/63 (38%), Positives = 30/63 (47%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXX--XXXXXPAKK---KK 530
             +A+A +     A   P  K  AA K    KG+    P +PAA         P KK   KK
Sbjct:   173 KAKAVAKPKAAAKKAPKPKAKAAAK----KGAGAATPKKPAARKPPTKAATPVKKAARKK 228

Query:   531 PAAAKSK 551
             PAA K+K
Sbjct:   229 PAAKKAK 235

 Score = 57 (20.1 bits), Expect = 2.3, Sum P(2) = 0.90
 Identities = 17/44 (38%), Positives = 24/44 (54%), Frame = +1

Query:   145 APEPASADPPLEEKEE--TKPEAKA--KKT--KEPKPKKVSRPR 258
             A  PA+  P    K++   KP+AKA  KKT  K P  K  ++P+
Sbjct:   124 AKAPAAVKPKTATKKKPAAKPKAKAPAKKTAAKSPAKKAAAKPK 167


 >gi|121907|sp|P26569|H12_ARATH  HISTONE H1.2 >gi|70682|pir||HSMU12 histone H1.2
            - Arabidopsis thaliana >gi|16320|emb|CAA44316.1| (X62459) Histone
            H1-2 [Arabidopsis thaliana] >gi|6598353|gb|AAF18593.1|AC002340_1
            (AC002340) histone H1, partial [Arabidopsis thaliana]
            Length = 273

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):   _______________________                           
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 273
                       0       50       100      150      200      250
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       45..136
   PFAM                 linker_histone: linker histone H1 and H5 61..131
   PRODOM               PD055107: H12_ARATH                      1..60
   PRODOM               PD000373: H1(14) H11(5) H12(4)           62..107
   PRODOM               PD194178: H12_ARATH                      109..137
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     139..272
__________________


  Plus Strand HSPs:

 Score = 236 (83.1 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
 Identities = 59/124 (47%), Positives = 75/124 (60%), Frame = +1

Query:   109 MATEEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEP-------KPKKVSRPRNPP 267
             M+ EE  V      +  +AD  ++  E+ KP AK  K+K+        KP K + P    
Sbjct:     1 MSIEEENVPT--TVDSGAADTTVKSPEK-KPAAKGGKSKKTTTAKATKKPVKAAAPTKKK 57

Query:   268 T---HPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPE 438
             T   HP+YEEM+KDAI +LKE+TGSSQYAI KFIEEKHK LPP F+KLLL + +     E
Sbjct:    58 TTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASE 117

Query:   439 NSSKSKA 459
                K KA
Sbjct:   118 KLVKVKA 124

 Score = 174 (61.3 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
 Identities = 53/106 (50%), Positives = 58/106 (54%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPR--PA---A 578
             LK+LVA+ KLVKVK SFK+P  R AA       P KKK    AK K K      PA   A
Sbjct:   110 LKRLVASEKLVKVKASFKIPSARSAATPKPAA-PVKKKATVVAKPKGKVAAAVAPAKAKA 168

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
              AK TK   +K  AK K  AKPKAK  A AKP +K  A A  K K   A
Sbjct:   169 AAKGTKKPAAKVVAKAKVTAKPKAKVTA-AKPKSKSVA-AVSKTKAVAA 215

 Score = 169 (59.5 bits), Expect = 4.5e-35, Sum P(2) = 4.5e-35
 Identities = 58/117 (49%), Positives = 63/117 (53%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPR--PA---A 578
             LK+LVA+ KLVKVK SFK+P  R AA       P KKK    AK K K      PA   A
Sbjct:   110 LKRLVASEKLVKVKASFKIPSARSAATPKPAA-PVKKKATVVAKPKGKVAAAVAPAKAKA 168

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPA---KAKPAA---KPKAXAAXKPK----PAXA 725
              AK TK   +K  AK K  AKPKAK  A   K+K  A   K KA AA KPK    PA A
Sbjct:   169 AAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAA-KPKAKERPAKA 226

 Score = 98 (34.5 bits), Expect = 0.12, P = 0.12
 Identities = 33/116 (28%), Positives = 47/116 (40%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G+  AA    +  ++    K  AA  + K K + K P  +  A        A   K  A
Sbjct:   154 KGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAK-PKAKVTAAKPKSKSVAAVSKTKA 212

Query:   540 AKSKPKPKPRPA-AKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXK 707
               +KPK K RPA A    T+ +  K  A P        KAPAK+     P   A+ +
Sbjct:   213 VAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSPAKRASTR 269

 Score = 98 (34.5 bits), Expect = 0.12, P = 0.12
 Identities = 39/124 (31%), Positives = 52/124 (41%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK-------- 524
             A++A+T    A   P+KK        K K +  + P +  A       PA K        
Sbjct:   131 ARSAATPKPAA---PVKKKATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVT 187

Query:   525 KKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAK---APAKAKPAAKPKAX 695
              KP A  +  KPK +  A    TKA  +K  AK +PA   +     +P K K AA  K  
Sbjct:   188 AKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKERPAKASRTSTRTSPGK-KVAAPAKKV 246

Query:   696 AAXKPKPA 719
             A  K  PA
Sbjct:   247 AVTKKAPA 254

 Score = 92 (32.4 bits), Expect = 0.62, P = 0.46
 Identities = 37/119 (31%), Positives = 49/119 (41%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G+  AA    +  ++    K  AA  + K K + K P  +  A        A   K  A
Sbjct:   154 KGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAK-PKAKVTAAKPKSKSVAAVSKTKA 212

Query:   540 AKSKPKPKPRPA-AKAKDTKATKSK---APAKP------KPAAKPKAKAPAKAKPAAKPK 689
               +KPK K RPA A    T+ +  K   APAK        PA   K K+PAK     K K
Sbjct:   213 VAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKVKSPAKRASTRKAK 272

 Score = 84 (29.6 bits), Expect = 5.1, P = 0.99
 Identities = 35/111 (31%), Positives = 49/111 (44%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLV---KVKGSFKLPPTRPAAXXXXXXX----PAKKK 527
             A A +    + +  P  K+VA  K+    K K +   P ++  A           P  K+
Sbjct:   162 APAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAAVSKTKAVAAKPKAKE 221

Query:   528 KPAAAK---SKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPK 689
             +PA A    ++  P  + AA AK    TK KAPAK       K K+PAK     K K
Sbjct:   222 RPAKASRTSTRTSPGKKVAAPAKKVAVTK-KAPAK-----SVKVKSPAKRASTRKAK 272


 >gi|2641211|gb|AAB86857.1|  (AF031547) histone-like protein [Fritillaria
            agrestis]
            Length = 236

Frame  3 hits (HSPs):                       ______________________________
Frame  1 hits (HSPs):   ____________________                              
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 236
                       0         50       100        150        200

  Plus Strand HSPs:

 Score = 240 (84.5 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 52/93 (55%), Positives = 61/93 (65%), Frame = +1

Query:   130 VAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAIT 309
             VA+E    PA A  P+   E      K  K K PK KK S  + P  HP+Y EM+ +AI 
Sbjct:     5 VAIET---PAFAPVPVARDEPVAKPGKVTKAKAPKEKKASVAKKPALHPTYLEMISEAIA 61

Query:   310 SLKEKTGSSQYAIAKFIEEKHKQ-LPPNFKKLLL 408
             SLKE+TGSSQYAIAKF+E+KHK  LP NFKKLLL
Sbjct:    62 SLKERTGSSQYAIAKFVEDKHKSHLPANFKKLLL 95

 Score = 142 (50.0 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 44/112 (39%), Positives = 53/112 (47%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKL-----PPTRPAAXXXXXXXPAKKKKPAAAKSKP---KPKPR 569
             L+KL AAGKL KVK S+K+     P  +P +        A K K AA K K    KPKP+
Sbjct:    98 LQKLTAAGKLTKVKNSYKISAKPTPAAKPKSAAVKPKSAATKLKSAAKKVKKAAVKPKPK 157

Query:   570 PAAKAKDTKATKSKA-PAKPKPAAKPKAKAPA-KAKPAAKPKAXAAXKPKPA 719
              AA      A   K+ PA  KP    K+K  A K K A +P   A    K A
Sbjct:   158 SAAVKPKAPAVNMKSKPAALKPNTVTKSKTVALKGKTAGRPAKAAKTSVKAA 209

 Score = 134 (47.2 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
 Identities = 46/98 (46%), Positives = 52/98 (53%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             L+KL AAGKL KVK S+K+   +P         PA K K AA K  PK     A K K  
Sbjct:    98 LQKLTAAGKLTKVKNSYKIS-AKPT--------PAAKPKSAAVK--PKSA---ATKLKSA 143

Query:   594 KATKSKAPAKPKP-AAKPKAKAPA---KAKPAA-KPKAXAAXK 707
                  KA  KPKP +A  K KAPA   K+KPAA KP      K
Sbjct:   144 AKKVKKAAVKPKPKSAAVKPKAPAVNMKSKPAALKPNTVTKSK 186

 Score = 106 (37.3 bits), Expect = 6.8e-29, Sum P(2) = 6.8e-29
 Identities = 44/117 (37%), Positives = 49/117 (41%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA-AKSK 551
             A  T   +  S  +K   AA KL       K    +P           K K PA   KSK
Sbjct:   118 AKPTPAAKPKSAAVKPKSAATKLKSAAKKVKKAAVKPKPKSAA----VKPKAPAVNMKSK 173

Query:   552 PKP-KPRPAAKAKDTKATKSKAPAKPKPAAKPKAKA-PAK-AKPAAKPKAXAAXK---PK 713
             P   KP    K+K T A K K   +P  AAK   KA P K A P A  KA A  K   PK
Sbjct:   174 PAALKPNTVTKSK-TVALKGKTAGRPAKAAKTSVKAAPGKKAAPVALKKAKAGKKVTTPK 232

Query:   714 PA 719
              A
Sbjct:   233 KA 234

 Score = 77 (27.1 bits), Expect = 7.4e-26, Sum P(2) = 7.4e-26
 Identities = 35/97 (36%), Positives = 40/97 (41%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA-KAKDT- 593
             KL +A K VK K + K P  + AA          K KPAA K     K +  A K K   
Sbjct:   139 KLKSAAKKVK-KAAVK-PKPKSAAVKPKAPAVNMKSKPAALKPNTVTKSKTVALKGKTAG 196

Query:   594 ---KATKSKAPAKP----KPAAKPKAKAPAKAKPAAKPK 689
                KA K+   A P     P A  KAKA  K     K K
Sbjct:   197 RPAKAAKTSVKAAPGKKAAPVALKKAKAGKKVTTPKKAK 235

 Score = 57 (20.1 bits), Expect = 9.1e-24, Sum P(2) = 9.1e-24
 Identities = 23/74 (31%), Positives = 31/74 (41%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAK 545
             +A A + + + A+  P    V   K V +KG     P + AA       P KK  P A K
Sbjct:   164 KAPAVNMKSKPAALKP--NTVTKSKTVALKGKTAGRPAK-AAKTSVKAAPGKKAAPVALK 220

Query:   546 -SKPKPKPRPAAKAK 587
              +K   K     KAK
Sbjct:   221 KAKAGKKVTTPKKAK 235


 >gi|3204127|emb|CAA07233.1|  (AJ006767) histone H1 [Cicer arietinum]
            Length = 188

Frame  3 hits (HSPs):                    ______________________________   
Frame  1 hits (HSPs):    ___________________                              
                        __________________________________________________
Database sequence:     |             |            |            |          | 188
                       0            50          100          150

  Plus Strand HSPs:

 Score = 212 (74.6 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 39/67 (58%), Positives = 51/67 (76%), Frame = +1

Query:   226 EPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLL 405
             +PK KK +  + P +HP+Y EM+ +AI SLKE+TGSSQ+AI KFIEEKHK L P F+KL+
Sbjct:     7 QPKSKKTASTKKPLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLI 66

Query:   406 LYH*RSS 426
             L H + S
Sbjct:    67 LLHLKKS 73

 Score = 170 (59.8 bits), Expect = 1.2e-32, Sum P(2) = 1.2e-32
 Identities = 48/95 (50%), Positives = 56/95 (58%), Frame = +3

Query:   408 LPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAK 587
             L LKK VAAGKLVKVKGSFKL P + +        P     PAA K K K   +PAAKA 
Sbjct:    68 LHLKKSVAAGKLVKVKGSFKLAPAKSSVAK-----PKAATAPAATK-KAKAVTKPAAKA- 120

Query:   588 DTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKA 692
                ATK KA A  KP +  KA++  +A+  AKPKA
Sbjct:   121 ---ATKPKAKAVAKPKSSGKAQSCNEAENGAKPKA 152

 Score = 158 (55.6 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 47/110 (42%), Positives = 54/110 (49%), Frame = +3

Query:   408 LPLKKLVAAGKLVKVKGSFKLPPTRPA-AXXXXXXXPAKKKKPAA-----AKSKPKPKPR 569
             L LKK VAAGKLVKVKGSFKL P + + A       PA  KK  A     AK+  KPK +
Sbjct:    68 LHLKKSVAAGKLVKVKGSFKLAPAKSSVAKPKAATAPAATKKAKAVTKPAAKAATKPKAK 127

Query:   570 PAAKAKDTKATKS--KAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
               AK K +   +S  +A    KP AK     P K   A   K     KPK
Sbjct:   128 AVAKPKSSGKAQSCNEAENGAKPKAKTVKTTPVKKAVAKTTKKVPVKKPK 177

 Score = 94 (33.1 bits), Expect = 1.0e-24, Sum P(2) = 1.0e-24
 Identities = 29/64 (45%), Positives = 34/64 (53%), Frame = +3

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAK--AKPAAKPKAX 695
             KK  AA K     K + + K    K++ +K  A   PAA  KAKA  K  AK A KPKA 
Sbjct:    71 KKSVAAGKLV---KVKGSFKLAPAKSSVAKPKAATAPAATKKAKAVTKPAAKAATKPKAK 127

Query:   696 AAXKPK 713
             A  KPK
Sbjct:   128 AVAKPK 133

 Score = 88 (31.0 bits), Expect = 4.4e-24, Sum P(2) = 4.4e-24
 Identities = 31/65 (47%), Positives = 35/65 (53%), Frame = +3

Query:   528 KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKP--KPAAKPKAKAPAKAKPAAKPK---- 689
             K A AKS    KP+ A     TK  K+KA  KP  K A KPKAKA AK K + K +    
Sbjct:    87 KLAPAKSSVA-KPKAATAPAATK--KAKAVTKPAAKAATKPKAKAVAKPKSSGKAQSCNE 143

Query:   690 AXAAXKPK 713
             A    KPK
Sbjct:   144 AENGAKPK 151


 >gi|7439662|pir||T06392  histone H1 - tomato >gi|3021487|emb|CAA12232.1|
            (AJ224933) histone H1 [Lycopersicon esculentum]
            Length = 271

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):   ____________________________________              
                        __________________________________________________
Database sequence:     |         |        |        |        |        |    | 271
                       0        50      100      150      200      250

  Plus Strand HSPs:

 Score = 312 (109.8 bits), Expect = 6.4e-27, P = 6.4e-27
 Identities = 76/194 (39%), Positives = 106/194 (54%), Frame = +1

Query:   109 MATEEPTVAVEPAPEP-ASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPR--NPPTHPS 279
             MATEEP VA+EP  EP   A+P  EE    + + + KK KE K KK S PR  NPPTHPS
Sbjct:     1 MATEEPVVAIEPVNEPMVVAEPATEENPPAETD-EPKKEKEIKAKKSSAPRKRNPPTHPS 59

Query:   280 YEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPENSSKSKA 459
             Y EM+K+AI +LK+KTGSSQYAI KFIE+K K LP NF+K+LL   +      +    K 
Sbjct:    60 YFEMIKEAIVTLKDKTGSSQYAITKFIEDKQKNLPSNFRKMLLAQLKKLVA--SGKLVKV 117

Query:   460 RSSSHLPDLLXXXXXXXXRQRRKSPQLPSPSLSLSPGPLRKPRILRQLNR---RHQLSPS 630
             +SS  LP           ++    P+      +    P  KP++     +   + +  P 
Sbjct:   118 KSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSKAKPK 177

Query:   631 QLLSLKPKLQPRPNPLL 681
              +++ K K   +P  ++
Sbjct:   178 PVVAAKAKPAAKPKAVV 194

 Score = 224 (78.9 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 64/114 (56%), Positives = 69/114 (60%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPA----AAKSKPKPKPRPAA- 578
             LKKLVA+GKLVKVK S+KLP  + AA          K K A    A K+KPKPKP+ AA 
Sbjct:   105 LKKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAP 164

Query:   579 KAKDTKATKSKAPAKP------KPAAKPKA---KAPAKAKPAAKPKAXAAXKPKPA 719
             KAK   ATKSKA  KP      KPAAKPKA   K  A  KP A  KA AA KPK A
Sbjct:   165 KAKT--ATKSKAKPKPVVAAKAKPAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAA 218

 Score = 187 (65.8 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 55/102 (53%), Positives = 62/102 (60%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             LKKLVA+GKLVKVK S+KLP  + AA             PA AK K   KP+ AA+AK  
Sbjct:   105 LKKLVASGKLVKVKSSYKLPAPKAAA-------------PALAKKKSIAKPK-AAQAK-- 148

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             KATK+K   KPK AA PKAK   K+K  AKPK   A K KPA
Sbjct:   149 KATKAKPKPKPKVAA-PKAKTATKSK--AKPKPVVAAKAKPA 187

 Score = 151 (53.2 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 51/104 (49%), Positives = 56/104 (53%), Frame = +3

Query:   399 ASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA 578
             A +L  KK +A  K  + K + K  P +P          A K K  A KSK KPKP  AA
Sbjct:   130 APALAKKKSIAKPKAAQAKKATKAKP-KPKPKVA-----APKAK-TATKSKAKPKPVVAA 182

Query:   579 KAKDTKATKSKAP-AKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             KAK   A K KA  AKPK A KPKA  P KAK A KPKA A  KP
Sbjct:   183 KAKP--AAKPKAVVAKPKAAVKPKA--PVKAKAAVKPKA-ANEKP 222

 Score = 147 (51.7 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 45/117 (38%), Positives = 55/117 (47%), Frame = +3

Query:   372 QAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSK 551
             +AA+  L +  S+   K   A K  K K   K     P A        AK K   AAK+K
Sbjct:   127 KAAAPALAKKKSIAKPKAAQAKKATKAKPKPKPKVAAPKAKTATKSK-AKPKPVVAAKAK 185

Query:   552 PKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA--KAPAK-AKPAAKPKAXAAXKPKPA 719
             P  KP+ A  AK   A K KAP K K A KPKA  + PAK A+ + +        PKPA
Sbjct:   186 PAAKPK-AVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAAPKPA 243

 Score = 134 (47.2 bits), Expect = 6.0e-06, P = 6.0e-06
 Identities = 39/69 (56%), Positives = 43/69 (62%), Frame = +3

Query:   513 PAKKKK-PAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPK 689
             PA K   PA AK K   KP+ AA+AK  KATK+K   KPK AA PKAK   K+K  AKPK
Sbjct:   124 PAPKAAAPALAKKKSIAKPK-AAQAK--KATKAKPKPKPKVAA-PKAKTATKSK--AKPK 177

Query:   690 AXAAXKPKPA 719
                A K KPA
Sbjct:   178 PVVAAKAKPA 187

 Score = 98 (34.5 bits), Expect = 0.12, P = 0.12
 Identities = 30/85 (35%), Positives = 39/85 (45%), Frame = +3

Query:   471 PPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKP---RPAAKAK-DTKATKSKAPAKPKPAA 638
             P  +P A         K K P  AK+  KPK    +PA  A+  T++T S+  A PKPA 
Sbjct:   186 PAAKPKAVVAKPKAAVKPKAPVKAKAAVKPKAANEKPAKVARTSTRSTPSRKAA-PKPAV 244

Query:   639 KPKAKAPAKAKPAAKP-KAXAAXKPK 713
             K       K+K    P K  +A K K
Sbjct:   245 KKAPVKSVKSKTVKSPAKKASARKAK 270

 Score = 87 (30.6 bits), Expect = 2.3, P = 0.90
 Identities = 31/66 (46%), Positives = 35/66 (53%), Frame = +3

Query:   522 KKKPAAAKS-KPKPKPR-PAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAX 695
             KK  A+ K  K K   + PA KA      K K+ AKPK A   +AK   KAKP  KPK  
Sbjct:   106 KKLVASGKLVKVKSSYKLPAPKAAAPALAKKKSIAKPKAA---QAKKATKAKPKPKPKV- 161

Query:   696 AAXKPKPA 719
             AA K K A
Sbjct:   162 AAPKAKTA 169


 >gi|6681423|dbj|BAA88671.1|  (AB029614) histone H1 [Nicotiana tabacum]
            Length = 279

Frame  3 hits (HSPs):                     ________________________________
Frame  1 hits (HSPs):   ____________________________________              
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 279
                       0       50      100      150      200      250

  Plus Strand HSPs:

 Score = 307 (108.1 bits), Expect = 2.2e-26, P = 2.2e-26
 Identities = 80/191 (41%), Positives = 101/191 (52%), Frame = +1

Query:   109 MATEEPTVAVEPAPEPA--SADPPLEEKEETKPEAKAKKTKEPKPKKVSRPR--NPPTHP 276
             MATEEP VA E   EPA   A+P  E+        + KK KE K KK + PR  NPPTHP
Sbjct:     1 MATEEPVVATEIVTEPAVVEAEPAKEDNPPAVESDEPKKEKETKAKKPAAPRKRNPPTHP 60

Query:   277 SYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPENSSKSK 456
             SY EM+KDAI +LK+KTGSSQ+AI KFIE+K K LP NF+KLLL   +      +    K
Sbjct:    61 SYFEMIKDAIVTLKDKTGSSQHAITKFIEDKQKNLPSNFRKLLLVQLKKLVA--SGKLVK 118

Query:   457 ARSSSHLPDLLXXX-XXXXXRQRRKSPQLPSPSLSLSPGPLRKPRILRQLNRRHQLSPSQ 633
              +SS  LP               +K P     +    P P  KP+ +         +P  
Sbjct:   119 VKSSYKLPAARSAAPKAAATAPVKKKPAAKPKATKAKPKP--KPKTV---------APKA 167

Query:   634 LLSLKPKLQPRPNPLL 681
               + KPK +P+P   L
Sbjct:   168 KTATKPKAKPKPKAKL 183

 Score = 265 (93.3 bits), Expect = 6.1e-22, P = 6.1e-22
 Identities = 61/102 (59%), Positives = 66/102 (64%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKPKPKPRPAAKA 584
             LKKLVA+GKLVKVK S+KLP  R AA       P KKK   KP A K+KPKPKP+     
Sbjct:   107 LKKLVASGKLVKVKSSYKLPAARSAAPKAAATAPVKKKPAAKPKATKAKPKPKPK----- 161

Query:   585 KDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
               T A K+K   KPK   KPKAK  AKAKPA KPKA A  KPK A
Sbjct:   162 --TVAPKAKTATKPKAKPKPKAKLVAKAKPAVKPKAAAVAKPKAA 204

 Score = 257 (90.5 bits), Expect = 4.3e-21, P = 4.3e-21
 Identities = 59/102 (57%), Positives = 63/102 (61%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             LKKLVA+GKLVKVK S+KLP  R AA       P KKK PAA     K KP+P  K   T
Sbjct:   107 LKKLVASGKLVKVKSSYKLPAARSAAPKAAATAPVKKK-PAAKPKATKAKPKPKPK---T 162

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
              A K+K   KPK   KPKAK  AKAKPA KPKA A  KPK A
Sbjct:   163 VAPKAKTATKPKAKPKPKAKLVAKAKPAVKPKAAAVAKPKAA 204

 Score = 158 (55.6 bits), Expect = 3.9e-09, P = 3.9e-09
 Identities = 48/116 (41%), Positives = 56/116 (48%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA---AK 545
             A S   + A++ P+KK  AA K    K   K  P   A        P  K KP A   AK
Sbjct:   128 ARSAAPKAAATAPVKKKPAA-KPKATKAKPKPKPKTVAPKAKTATKPKAKPKPKAKLVAK 186

Query:   546 SKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAK-AKPAAKPKAXAAXKPKP 716
             +KP  KP+ AA AK   A K K P K K AAKPK K PAK A+ A +        PKP
Sbjct:   187 AKPAVKPKAAAVAKPKAAEKPKTPVKTKAAAKPKEK-PAKVARTATRSTPSRKAAPKP 243

 Score = 141 (49.6 bits), Expect = 8.4e-07, P = 8.4e-07
 Identities = 45/115 (39%), Positives = 55/115 (47%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             A S   + A++ P+KK  AA    K K +   P  +P         P K K     K+KP
Sbjct:   128 ARSAAPKAAATAPVKKKPAA----KPKATKAKPKPKPKTVA-----P-KAKTATKPKAKP 177

Query:   555 KPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             KPK +  AKAK     K+ A AKPK A KPK   P K K AAKPK   A   + A
Sbjct:   178 KPKAKLVAKAKPAVKPKAAAVAKPKAAEKPKT--PVKTKAAAKPKEKPAKVARTA 230

 Score = 123 (43.3 bits), Expect = 0.00015, P = 0.00015
 Identities = 49/135 (36%), Positives = 64/135 (47%), Frame = +3

Query:   336 PIRDCEVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKL-----PPTRPAAXXX 500
             P++     + +A  A  + +  +  P  K     K  K K   KL     P  +P A   
Sbjct:   140 PVKKKPAAKPKATKAKPKPKPKTVAPKAKTATKPK-AKPKPKAKLVAKAKPAVKPKAAAV 198

Query:   501 XXXXPAKKKK-PAAAKSKPKPKPRPAAKAKD-TKATKSKAPAKPKPAAKPKAKAPAK-AK 671
                  A+K K P   K+  KPK +PA  A+  T++T S+  A PKP AK   KAP K A 
Sbjct:   199 AKPKAAEKPKTPVKTKAAAKPKEKPAKVARTATRSTPSRKAA-PKPVAK---KAPVKKAA 254

Query:   672 PAAKP-KAXAAXKP-KPAXA 725
             PAAK  KA  A  P K A A
Sbjct:   255 PAAKSVKAKTAKSPAKRASA 274

 Score = 121 (42.6 bits), Expect = 0.00025, P = 0.00025
 Identities = 47/118 (39%), Positives = 58/118 (49%), Frame = +3

Query:   372 QAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKK-PAAAKS 548
             +A +    +A   P  KLVA  K          P  +P A        A+K K P   K+
Sbjct:   166 KAKTATKPKAKPKPKAKLVAKAK----------PAVKPKAAAVAKPKAAEKPKTPVKTKA 215

Query:   549 KPKPKPRPAAKAKD-TKATKSKAPAKPKPAAKPKAKAPAK-AKPAAKP-KAXAAXKP-KP 716
               KPK +PA  A+  T++T S+  A PKP AK   KAP K A PAAK  KA  A  P K 
Sbjct:   216 AAKPKEKPAKVARTATRSTPSRKAA-PKPVAK---KAPVKKAAPAAKSVKAKTAKSPAKR 271

Query:   717 AXA 725
             A A
Sbjct:   272 ASA 274

 Score = 77 (27.1 bits), Expect = 0.012, Sum P(2) = 0.012
 Identities = 24/85 (28%), Positives = 36/85 (42%), Frame = +1

Query:   100 LISMATEEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPS 279
             L+ + +     A   A   A+A  P+++K   KP+A   K K PKPK V+      T P 
Sbjct:   116 LVKVKSSYKLPAARSAAPKAAATAPVKKKPAAKPKATKAKPK-PKPKTVAPKAKTATKPK 174

Query:   280 YEEMVK-DAITSLKEKTGSSQYAIAK 354
              +   K   +   K        A+AK
Sbjct:   175 AKPKPKAKLVAKAKPAVKPKAAAVAK 200

 Score = 69 (24.3 bits), Expect = 0.012, Sum P(2) = 0.012
 Identities = 27/84 (32%), Positives = 34/84 (40%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAG---KLVKV-KGSFKLPPTRPAAXX-XXXXXPAKKKKP 533
             A  A  +  E    P+K   AA    K  KV + + +  P+R AA        P KK  P
Sbjct:   196 AAVAKPKAAEKPKTPVKTKAAAKPKEKPAKVARTATRSTPSRKAAPKPVAKKAPVKKAAP 255

Query:   534 AAAKSKPKPKPRPAAKAKDTKATK 605
             AA   K K    PA +A   K  K
Sbjct:   256 AAKSVKAKTAKSPAKRASARKGRK 279


 >gi|4996567|dbj|BAA78535.1|  (AB021873) ribosome-sedimenting protein [Pisum
            sativum]
            Length = 297

Frame  3 hits (HSPs):                  ___________________________________
Frame  1 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |        |       |        |       |       |        | 297
                       0       50     100      150     200     250

  Plus Strand HSPs:

 Score = 302 (106.3 bits), Expect = 7.4e-26, P = 7.4e-26
 Identities = 77/125 (61%), Positives = 86/125 (68%), Frame = +1

Query:   109 MATEEPT-VAVE-P-APEPASAD--PPLEEKEETKPEAKAKKT-KEPKPKKVSRPRNPPT 270
             MA+EEPT VAVE P   EP + D  PP+  + E +P AK KK  KEPK KK   P  P T
Sbjct:     1 MASEEPTTVAVEQPIVEEPEAVDTFPPVVNESE-EPTAKPKKAPKEPKAKKA--PAKPRT 57

Query:   271 HPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPENSSK 450
             HP+YEEMVK+AI +LKE+ GSSQYAIAKFIEEKHKQLP NFKKLLL   R         K
Sbjct:    58 HPTYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIRKLVASGKLVK 117

Query:   451 SKARSSSHLP 480
              KA  S  LP
Sbjct:   118 VKA--SYKLP 125

 Score = 231 (81.3 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
 Identities = 60/101 (59%), Positives = 67/101 (66%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             ++KLVA+GKLVKVK S+KLP    AA       PAKK  PAAAKSK KPK + A K+K  
Sbjct:   106 IRKLVASGKLVKVKASYKLPAKSSAAK------PAKK--PAAAKSKAKPKAKAATKSKAK 157

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP--KP 716
              A K+K  AK KPAAK  AK  AKAKPAAK K  A  KP  KP
Sbjct:   158 PAAKAKPAAKAKPAAK--AKPAAKAKPAAKAKPAAKAKPAAKP 198

 Score = 191 (67.2 bits), Expect = 8.3e-18, Sum P(2) = 8.3e-18
 Identities = 57/136 (41%), Positives = 70/136 (51%), Frame = +3

Query:   324 NRFEPIRDCEVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXX 503
             + F+ +   ++ +  A     +++ +  LP K   A           K  P   AA    
Sbjct:    96 SNFKKLLLVQIRKLVASGKLVKVKASYKLPAKSSAAKPAKKPAAAKSKAKPKAKAATKSK 155

Query:   504 XXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKP----KAKAPAKAK 671
                PA K KPAA K+KP  K +PAAKAK   A K+K  AK KPAAKP     AK  AKAK
Sbjct:   156 AK-PAAKAKPAA-KAKPAAKAKPAAKAKP--AAKAKPAAKAKPAAKPVKTAAAKPAAKAK 211

Query:   672 PAAKPKAXAAXKP----KPA 719
             PAAKPKA A  KP    KPA
Sbjct:   212 PAAKPKAAAKAKPAAKAKPA 231

 Score = 186 (65.5 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
 Identities = 60/124 (48%), Positives = 65/124 (52%), Frame = +3

Query:   378 ASTELQEASSL--PLKKLVAAGKLVKVKGSFKLPP-TRPAAXX--XXXXXPAKKKKPAAA 542
             AS +L   SS   P KK  AA    K K         +PAA         PA K KPAA 
Sbjct:   120 ASYKLPAKSSAAKPAKKPAAAKSKAKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAA- 178

Query:   543 KSKPKPKPRPAAKAKDT----KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             K+KP  K +PAAKAK      K   +K  AK KPAAKPKA A  KAKPAAK K  A  KP
Sbjct:   179 KAKPAAKAKPAAKAKPAAKPVKTAAAKPAAKAKPAAKPKAAA--KAKPAAKAKPAAKAKP 236

Query:   711 --KPAXA 725
               KPA A
Sbjct:   237 AAKPAKA 243

 Score = 162 (57.0 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
 Identities = 57/116 (49%), Positives = 63/116 (54%), Frame = +3

Query:   399 ASSLPLKKLVAAGKLVKVKGSFKLPPT---RPAAXX--XXXXXPAKKKKPAAAKSKPKPK 563
             A S    K  AA K  K K + K  P    +PAA         PA K KPAA K+KP  K
Sbjct:   140 AKSKAKPKAKAATKS-KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAA-KAKPAAK 197

Query:   564 P------RPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXA--AXKPKPA 719
             P      +PAAKAK   A K KA AK KPAAK  AK  AKAKPAAKP   A  + +  PA
Sbjct:   198 PVKTAAAKPAAKAKP--AAKPKAAAKAKPAAK--AKPAAKAKPAAKPAKAARTSTRTSPA 253

Query:   720 XA 725
              A
Sbjct:   254 AA 255

 Score = 156 (54.9 bits), Expect = 5.0e-11, Sum P(2) = 5.0e-11
 Identities = 50/114 (43%), Positives = 60/114 (52%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPT---RPAAXXXXXXXPAKKK--KPAAA 542
             A+T+ +   +   K    A    K K + K  P    +PAA       P K    KPAA 
Sbjct:   150 AATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPAA- 208

Query:   543 KSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             K+KP  KP+ AAKAK   A K+K  AK KPAAKP AKA A+      P A AA  PKPA
Sbjct:   209 KAKPAAKPKAAAKAKP--AAKAKPAAKAKPAAKP-AKA-ARTSTRTSPAAAAAA-PKPA 262

 Score = 147 (51.7 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 47/121 (38%), Positives = 58/121 (47%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAX--XXXXXXPAKKKKPAA 539
             +A+ A+     A + P  K   A K VK   +      +PAA         PA K KPAA
Sbjct:   173 KAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPAAKAKPAAKPKAAAKAKPAAKAKPAA 232

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-------KAPAKAKPAAKPKAXA 698
              K+KP  KP  AA+   T+ + + A A PKPAAK  A       KA AKAK A  P   A
Sbjct:   233 -KAKPAAKPAKAARTS-TRTSPAAAAAAPKPAAKKAAPVKKTPVKAAAKAKTAKSPAKKA 290

Query:   699 AXK 707
             A K
Sbjct:   291 AAK 293

 Score = 136 (47.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
 Identities = 44/118 (37%), Positives = 55/118 (46%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAX--XXXXXXPAKKKKPAA 539
             +A+ A+     A + P  K   A K VK   +      +PAA         PA K KPAA
Sbjct:   173 KAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPAAKAKPAAKPKAAAKAKPAAKAKPAA 232

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
              K+KP  KP  AA+   T+ + + A A PKPAAK       KA P  K    AA K K A
Sbjct:   233 -KAKPAAKPAKAARTS-TRTSPAAAAAAPKPAAK-------KAAPVKKTPVKAAAKAKTA 283

 Score = 114 (40.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 37/103 (35%), Positives = 49/103 (47%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGK---LVKVKGSFKLPPT---RPAAXXXXXXXPAKKK 527
             +A+ A+  ++ A++ P  K   A K     K K + K  P    +PAA        + + 
Sbjct:   191 KAKPAAKPVKTAAAKPAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRT 250

Query:   528 KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAK 665
              PAAA + PKP    A KA   K T  KA AK K A  P  KA AK
Sbjct:   251 SPAAAAAAPKPA---AKKAAPVKKTPVKAAAKAKTAKSPAKKAAAK 293

 Score = 63 (22.2 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
 Identities = 13/41 (31%), Positives = 23/41 (56%), Frame = +1

Query:   133 AVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRP 255
             A +PA +PA+A    + K +   ++KAK   + KP   ++P
Sbjct:   130 AAKPAKKPAAAKSKAKPKAKAATKSKAKPAAKAKPAAKAKP 170

 Score = 50 (17.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
 Identities = 13/43 (30%), Positives = 20/43 (46%), Frame = +1

Query:    94 FPLISMATEEPTVAVEPAP-EPASADPPLEEKEETKPEAKAKK 219
             FP +   +EEPT   + AP EP +   P + +     E   K+
Sbjct:    25 FPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKE 67


 >gi|729665|sp|P40262|H1E_CHIPA  HISTONE H1E >gi|457099|gb|AAA21714.1| (L29106)
            histone H1e [Chironomus pallidivittatus]
            Length = 235

Frame  3 hits (HSPs):                       ______________________________
Frame  1 hits (HSPs):   _____________________     ____     _______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 235
                       0         50        100       150        200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       34..128
   DOMO                 DM00672: HISTONEH1                       130..234
   PFAM                 linker_histone: linker histone H1 and H5 50..125
   PRODOM               PD007955: H11(2) H1E(2)                  1..49
   PRODOM               PD000373: H1(14) H11(5) H12(4)           51..98
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     123..234
__________________


  Plus Strand HSPs:

 Score = 166 (58.4 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
 Identities = 44/97 (45%), Positives = 56/97 (57%), Frame = +1

Query:   121 EPTVAVEPAPEPAS-ADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVK 297
             +P   VE   E A  A  P  +KE+     KA+K K  KPKK   P+  PTHP   EMV 
Sbjct:     3 DPAQEVEAPVEAAPVASSPKGKKEKAPKAPKAEKPKSDKPKK---PKAAPTHPPVSEMVV 59

Query:   298 DAITSLKEKTGSSQYAIAKFIEEKHK----QLPPNFKKLL 405
             +AIT+LKE+ GSS  AI KF+  ++K    +L P  KK L
Sbjct:    60 NAITTLKERGGSSLIAIKKFVAAQYKVDVEKLVPFIKKFL 99

 Score = 147 (51.7 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
 Identities = 49/118 (41%), Positives = 56/118 (47%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKKKPAAAK--SKPKPKPRP 572
             LK  VA G L++ KG     SFKLPP             A K K    +   + K   +P
Sbjct:    99 LKASVAKGTLLQAKGKGASGSFKLPPAAKKVDKPKKAPAAPKPKSTNKRVTGEKKVVKKP 158

Query:   573 AAKAKDTK-ATKSKAPAKPKPAAKPKAKAPA--KAKPAAKPKAXAA----XKPKPAXA 725
             AAK  + K ATK+  PA  K AAKP AK  A  K KPAAKPK         KPK A A
Sbjct:   159 AAKKPEAKKATKAAKPAAKKVAAKPAAKKAAAPKPKPAAKPKKEVKPKEEAKPKKAAA 216

 Score = 144 (50.7 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
 Identities = 40/89 (44%), Positives = 44/89 (49%), Frame = +3

Query:   447 KVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKP 626
             +V G  K+   +PAA         K  KPAA K   KP  + AA  K   A K K   KP
Sbjct:   147 RVTGEKKVVK-KPAAKKPEAKKATKAAKPAAKKVAAKPAAKKAAAPKPKPAAKPKKEVKP 205

Query:   627 KPAAKPKAKAPAKAKPAAKP-KAXAAXKPK 713
             K  AKPK  A   AKPAAKP K  AA K K
Sbjct:   206 KEEAKPKKAAAKPAKPAAKPAKKPAAKKAK 235

 Score = 141 (49.6 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
 Identities = 46/95 (48%), Positives = 53/95 (55%), Frame = +3

Query:   417 KKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKPKPKPRPAAKAK 587
             K++    K+VK K + K P  + A        PA KK   KPAA K+   PKP+PAAK K
Sbjct:   146 KRVTGEKKVVK-KPAAKKPEAKKATKAAK---PAAKKVAAKPAAKKAAA-PKPKPAAKPK 200

Query:   588 DTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAA 701
               K  K K  AKPK AA   AK PA AKPA KP A  A
Sbjct:   201 --KEVKPKEEAKPKKAAAKPAK-PA-AKPAKKPAAKKA 234

 Score = 85 (29.9 bits), Expect = 3.0, P = 0.95
 Identities = 17/54 (31%), Positives = 30/54 (55%), Frame = +1

Query:   118 EEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPS 279
             ++ T A +PA +  +A P  ++    KP+  AK  KE KPK+ ++P+     P+
Sbjct:   166 KKATKAAKPAAKKVAAKPAAKKAAAPKPKPAAKPKKEVKPKEEAKPKKAAAKPA 219

 Score = 84 (29.6 bits), Expect = 3.9, P = 0.98
 Identities = 21/58 (36%), Positives = 31/58 (53%), Frame = +1

Query:   130 VAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVS-RPRNPPTHPSYEEMVKDA 303
             VA +PA + A+A  P   K   KP+ + K  +E KPKK + +P  P   P+ +   K A
Sbjct:   179 VAAKPAAKKAAAPKP---KPAAKPKKEVKPKEEAKPKKAAAKPAKPAAKPAKKPAAKKA 234

 Score = 76 (26.8 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
 Identities = 26/75 (34%), Positives = 35/75 (46%), Frame = +3

Query:   375 AASTELQEASSL--PLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKS 548
             A   E ++A+    P  K VAA    K   +   P  +PAA       P ++ KP  A +
Sbjct:   160 AKKPEAKKATKAAKPAAKKVAAKPAAKKAAA---PKPKPAAKPKKEVKPKEEAKPKKAAA 216

Query:   549 KP-KPKPRPAAKAKDTKA 599
             KP KP  +PA K    KA
Sbjct:   217 KPAKPAAKPAKKPAAKKA 234

 Score = 41 (14.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
 Identities = 7/16 (43%), Positives = 9/16 (56%), Frame = +1

Query:   229 PKPKKVSRPRNPPTHP 276
             P  KKV +P+  P  P
Sbjct:   124 PAAKKVDKPKKAPAAP 139


 >gi|729666|sp|P40278|H1E_CHITE  HISTONE H1E >gi|469183|gb|AAB53945.1| (L29105)
            histone H1e [Chironomus tentans]
            Length = 237

Frame  3 hits (HSPs):                       ______________________________
Frame  1 hits (HSPs):   _____________________              _______________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 237
                       0         50       100        150       200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       34..140
   DOMO                 DM00672: HISTONEH1                       142..236
   PFAM                 linker_histone: linker histone H1 and H5 50..125
   PRODOM               PD007955: H11(2) H1E(2)                  1..49
   PRODOM               PD000373: H1(14) H11(5) H12(4)           51..98
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     123..236
__________________


  Plus Strand HSPs:

 Score = 166 (58.4 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
 Identities = 44/97 (45%), Positives = 56/97 (57%), Frame = +1

Query:   121 EPTVAVEPAPEPAS-ADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVK 297
             +P   VE   E A  A  P  +KE+     KA+K K  KPKK   P+  PTHP   EMV 
Sbjct:     3 DPAQEVEAPVEAAPVASSPKGKKEKAPKAPKAEKPKSDKPKK---PKAAPTHPPVSEMVV 59

Query:   298 DAITSLKEKTGSSQYAIAKFIEEKHK----QLPPNFKKLL 405
             +AIT+LKE+ GSS  AI KF+  ++K    +L P  KK L
Sbjct:    60 NAITTLKERGGSSLIAIKKFVAAQYKVDVEKLVPFIKKFL 99

 Score = 145 (51.0 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
 Identities = 50/119 (42%), Positives = 56/119 (47%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPA----KKKKPAAAKSKPKPKP 566
             LK  VA G L++ KG     SFKLPP            PA    K  KP     + K   
Sbjct:    99 LKASVAKGTLLQAKGKGASGSFKLPPAAKKVDKPKKA-PATPKPKSTKPKRVTGEKKVVK 157

Query:   567 RPAAKAKDTK-ATKSKAPAKPKPAAKPKAKAPAKAKP--AAKPKAXAA----XKPKPAXA 725
             +PAAK  + K ATK+  PA  K AAKP AK  A  KP  AAKPK         KPK A A
Sbjct:   158 KPAAKKPEAKKATKAAKPAAKKVAAKPAAKKAAAPKPKAAAKPKKEVKPKKEAKPKKAAA 217

 Score = 142 (50.0 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
 Identities = 45/113 (39%), Positives = 54/113 (47%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             A+ ++ +    P      + K  +V G  K+   +PAA         K  KPAA K   K
Sbjct:   125 AAKKVDKPKKAPATPKPKSTKPKRVTGEKKVVK-KPAAKKPEAKKATKAAKPAAKKVAAK 183

Query:   558 PKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKA--PAKAKPAAKP-KAXAAXKPK 713
             P  + AA  K   A K K   KPK  AKPK  A  PAK KPAAKP K  AA K K
Sbjct:   184 PAAKKAAAPKPKAAAKPKKEVKPKKEAKPKKAAAKPAK-KPAAKPAKKPAAKKAK 237

 Score = 139 (48.9 bits), Expect = 2.3e-24, Sum P(2) = 2.3e-24
 Identities = 41/111 (36%), Positives = 50/111 (45%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             A+ ++ +    P      + K  +V G  K+   +PAA         K  KPAA K   K
Sbjct:   125 AAKKVDKPKKAPATPKPKSTKPKRVTGEKKVVK-KPAAKKPEAKKATKAAKPAAKKVAAK 183

Query:   558 PKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             P  + AA  K   A K K   KPK  AKPK  A   AKPA KP A  A KP
Sbjct:   184 PAAKKAAAPKPKAAAKPKKEVKPKKEAKPKKAA---AKPAKKPAAKPAKKP 231

 Score = 99 (34.8 bits), Expect = 0.070, P = 0.067
 Identities = 21/62 (33%), Positives = 34/62 (54%), Frame = +1

Query:   118 EEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVK 297
             ++ T A +PA +  +A P  ++    KP+A AK  KE KPKK ++P+     P+ +   K
Sbjct:   167 KKATKAAKPAAKKVAAKPAAKKAAAPKPKAAAKPKKEVKPKKEAKPKKAAAKPAKKPAAK 226

Query:   298 DA 303
              A
Sbjct:   227 PA 228

 Score = 84 (29.6 bits), Expect = 4.0, P = 0.98
 Identities = 22/70 (31%), Positives = 35/70 (50%), Frame = +1

Query:   118 EEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRN--------PPTH 273
             ++ T A +PA +  +A P  ++    KP+A AK  KE KPKK ++P+         P   
Sbjct:   167 KKATKAAKPAAKKVAAKPAAKKAAAPKPKAAAKPKKEVKPKKEAKPKKAAAKPAKKPAAK 226

Query:   274 PSYEEMVKDA 303
             P+ +   K A
Sbjct:   227 PAKKPAAKKA 236

 Score = 64 (22.5 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
 Identities = 30/77 (38%), Positives = 37/77 (48%), Frame = +3

Query:   375 AASTELQEASSL--PLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKP--AAA 542
             A   E ++A+    P  K VAA    K   +   P  + AA       P K+ KP  AAA
Sbjct:   161 AKKPEAKKATKAAKPAAKKVAAKPAAKKAAA---PKPKAAAKPKKEVKPKKEAKPKKAAA 217

Query:   543 K--SKPKPKP--RPAAK-AK 587
             K   KP  KP  +PAAK AK
Sbjct:   218 KPAKKPAAKPAKKPAAKKAK 237


 >gi|699583|gb|AAA63154.1|  (U21211) histone H1-I [Chironomus dorsalis]
            Length = 241

Frame  3 hits (HSPs):                       ______________________________
Frame  1 hits (HSPs):   _____________________    _____________            
                        __________________________________________________
Database sequence:     |          |         |         |          |        | 241
                       0         50       100       150        200

  Plus Strand HSPs:

 Score = 163 (57.4 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
 Identities = 43/97 (44%), Positives = 55/97 (56%), Frame = +1

Query:   121 EPTVAVEPAPEPAS-ADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVK 297
             +P   VE   E A  A PP  +KE+     KA+K K  KPKK   P+  PTHP   EMV 
Sbjct:     3 DPAPEVEAPVEAAPVASPPKGKKEKAPKAPKAEKPKSDKPKK---PKVAPTHPPVSEMVV 59

Query:   298 DAITSLKEKTGSSQYAIAKFIEEKHK----QLPPNFKKLL 405
             +A+  LKE+ GSS  AI KF+  ++K    +L P  KK L
Sbjct:    60 NAVIILKERGGSSLIAIKKFVAAQYKVDVQKLVPFIKKFL 99

 Score = 159 (56.0 bits), Expect = 6.2e-25, Sum P(2) = 6.2e-25
 Identities = 51/116 (43%), Positives = 57/116 (49%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPA----KKKKPAAAKSKPKPKP 566
             LK  VA G L++ KG     SFKLPP            PA    K  KP     + K   
Sbjct:    99 LKASVAKGILLQAKGKGASGSFKLPPAAKKVEKKPKKVPATPKPKSTKPKRVTGEKKVVK 158

Query:   567 RPAAKAKDTK-ATKSKAPAKPKPAAKPKAKA-----PAKAKPAAKPKAXAAXKPKPA 719
             +PAAK  + K ATK+  PA  K AAKP AK      P  AKPAAKP A  A  PKPA
Sbjct:   159 KPAAKKPEAKIATKAVKPAAKKVAAKPAAKKAAAPKPKAAKPAAKPAAIKAA-PKPA 214

 Score = 147 (51.7 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 54/130 (41%), Positives = 68/130 (52%), Frame = +3

Query:   312 AEGENRFEPIRDCEVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAA 491
             A G  +  P    +V +   +  +T  +  S+ P K++    K+VK K + K P  + A 
Sbjct:   116 ASGSFKLPPAAK-KVEKKPKKVPATP-KPKSTKP-KRVTGEKKVVK-KPAAKKPEAKIAT 171

Query:   492 XXXXXXXPAKKK---KPAAAKSK-PKPKP-RPAAKAKDTKATKSKAPAKPKPAAKPKAKA 656
                    PA KK   KPAA K+  PKPK  +PAAK    KA     PA  KPAAKP AK 
Sbjct:   172 KAVK---PAAKKVAAKPAAKKAAAPKPKAAKPAAKPAAIKAAPK--PAAKKPAAKPAAKK 226

Query:   657 PAKAKPAAKPKAXAA 701
             PA AKPA KP A  A
Sbjct:   227 PA-AKPAKKPAAKKA 240

 Score = 136 (47.9 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
 Identities = 45/104 (43%), Positives = 51/104 (49%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKK--KKPAAAKSKPKPKP-R 569
             LK  VA G L++ KG     SFKLPP             AKK  KKP    + PKPK  +
Sbjct:    99 LKASVAKGILLQAKGKGASGSFKLPPA------------AKKVEKKPKKVPATPKPKSTK 146

Query:   570 PAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
             P     + K  K  A  KP+     KA  PA  K AAKP A  A  PKP  A
Sbjct:   147 PKRVTGEKKVVKKPAAKKPEAKIATKAVKPAAKKVAAKPAAKKAAAPKPKAA 198

 Score = 133 (46.8 bits), Expect = 3.2e-22, Sum P(2) = 3.2e-22
 Identities = 43/112 (38%), Positives = 52/112 (46%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             AA    ++   +P      + K  +V G  K+   +PAA         K  KPAA K   
Sbjct:   125 AAKKVEKKPKKVPATPKPKSTKPKRVTGEKKVVK-KPAAKKPEAKIATKAVKPAAKKVAA 183

Query:   555 KPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAK-PKAXAAXKP 710
             KP  + AA  K   A  +  PA  K A KP AK PA AKPAAK P A  A KP
Sbjct:   184 KPAAKKAAAPKPKAAKPAAKPAAIKAAPKPAAKKPA-AKPAAKKPAAKPAKKP 235

 Score = 131 (46.1 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
 Identities = 53/116 (45%), Positives = 59/116 (50%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPT-RPAAXXXXXXXPAKK--KKPAAAKSKPK---PKPRPAAK 581
             KL  A K V+ K   K+P T +P +         KK  KKPAA K + K      +PAAK
Sbjct:   121 KLPPAAKKVEKKPK-KVPATPKPKSTKPKRVTGEKKVVKKPAAKKPEAKIATKAVKPAAK 179

Query:   582 AKDTKATKSKAPA-KPK---PAAKPKA-KA---PAKAKPAAKPKAXA-AXKP--KPA 719
                 K    KA A KPK   PAAKP A KA   PA  KPAAKP A   A KP  KPA
Sbjct:   180 KVAAKPAAKKAAAPKPKAAKPAAKPAAIKAAPKPAAKKPAAKPAAKKPAAKPAKKPA 236

 Score = 103 (36.3 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
 Identities = 31/68 (45%), Positives = 35/68 (51%), Frame = +3

Query:   450 VKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKP- 626
             VK + K    +PAA       P K  KPAA  +  K  P+PAAK    K    K  AKP 
Sbjct:   174 VKPAAKKVAAKPAAKKAAAPKP-KAAKPAAKPAAIKAAPKPAAKKPAAKPAAKKPAAKPA 232

Query:   627 -KPAAKPKAK 653
              KPAAK KAK
Sbjct:   233 KKPAAK-KAK 241

 Score = 81 (28.5 bits), Expect = 8.6e-17, Sum P(2) = 8.6e-17
 Identities = 27/73 (36%), Positives = 34/73 (46%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK--KPAA 539
             EA+ A+  ++ A+     K  AA K    K     P  +PAA        AKK   KPAA
Sbjct:   166 EAKIATKAVKPAAKKVAAK-PAAKKAAAPKPKAAKPAAKPAAIKAAPKPAAKKPAAKPAA 224

Query:   540 AKSKPKPKPRPAAK 581
              K   KP  +PAAK
Sbjct:   225 KKPAAKPAKKPAAK 238

 Score = 48 (16.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
 Identities = 22/60 (36%), Positives = 27/60 (45%), Frame = +1

Query:    97 PLISMATEEPTVAVEPAPEPASADPPL---EEKEETKPEAK---AK-KTKEPKP--KKVS 249
             P  +   E+    V   P+P S  P     E+K   KP AK   AK  TK  KP  KKV+
Sbjct:   123 PPAAKKVEKKPKKVPATPKPKSTKPKRVTGEKKVVKKPAAKKPEAKIATKAVKPAAKKVA 182


 >gi|4106696|dbj|BAA36284.1|  (AB021872) ribosome-sedimenting protein [Pisum
            sativum]
            Length = 295

Frame  3 hits (HSPs):                  ___________________________________
Frame  1 hits (HSPs):   _____________________________                     
                        __________________________________________________
Database sequence:     |        |       |        |       |        |       | 295
                       0       50     100      150     200      250

  Plus Strand HSPs:

 Score = 293 (103.1 bits), Expect = 6.6e-25, P = 6.6e-25
 Identities = 75/123 (60%), Positives = 84/123 (68%), Frame = +1

Query:   115 TEEPT-VAVE-P-APEPASAD--PPLEEKEETKPEAKAKKT-KEPKPKKVSRPRNPPTHP 276
             +EEPT VAVE P   EP + D  PP+  + E +P AK KK  KEPK KK   P  P THP
Sbjct:     1 SEEPTTVAVEQPIVEEPEAVDTFPPVVNESE-EPTAKPKKAPKEPKAKKA--PAKPRTHP 57

Query:   277 SYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPENSSKSK 456
             +YEEMVK+AI +LKE+ GSSQYAIAKFIEEKHKQLP NFKKLLL   R         K K
Sbjct:    58 TYEEMVKEAIVALKERNGSSQYAIAKFIEEKHKQLPSNFKKLLLVQIRKLVASGKLVKVK 117

Query:   457 ARSSSHLP 480
             A  S  LP
Sbjct:   118 A--SYKLP 123

 Score = 231 (81.3 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
 Identities = 60/101 (59%), Positives = 67/101 (66%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             ++KLVA+GKLVKVK S+KLP    AA       PAKK  PAAAKSK KPK + A K+K  
Sbjct:   104 IRKLVASGKLVKVKASYKLPAKSSAAK------PAKK--PAAAKSKAKPKAKAATKSKAK 155

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP--KP 716
              A K+K  AK KPAAK  AK  AKAKPAAK K  A  KP  KP
Sbjct:   156 PAAKAKPAAKAKPAAK--AKPAAKAKPAAKAKPAAKAKPAAKP 196

 Score = 191 (67.2 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
 Identities = 57/136 (41%), Positives = 70/136 (51%), Frame = +3

Query:   324 NRFEPIRDCEVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXX 503
             + F+ +   ++ +  A     +++ +  LP K   A           K  P   AA    
Sbjct:    94 SNFKKLLLVQIRKLVASGKLVKVKASYKLPAKSSAAKPAKKPAAAKSKAKPKAKAATKSK 153

Query:   504 XXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKP----KAKAPAKAK 671
                PA K KPAA K+KP  K +PAAKAK   A K+K  AK KPAAKP     AK  AKAK
Sbjct:   154 AK-PAAKAKPAA-KAKPAAKAKPAAKAKP--AAKAKPAAKAKPAAKPVKTAAAKPAAKAK 209

Query:   672 PAAKPKAXAAXKP----KPA 719
             PAAKPKA A  KP    KPA
Sbjct:   210 PAAKPKAAAKAKPAAKAKPA 229

 Score = 186 (65.5 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
 Identities = 60/124 (48%), Positives = 65/124 (52%), Frame = +3

Query:   378 ASTELQEASSL--PLKKLVAAGKLVKVKGSFKLPP-TRPAAXX--XXXXXPAKKKKPAAA 542
             AS +L   SS   P KK  AA    K K         +PAA         PA K KPAA 
Sbjct:   118 ASYKLPAKSSAAKPAKKPAAAKSKAKPKAKAATKSKAKPAAKAKPAAKAKPAAKAKPAA- 176

Query:   543 KSKPKPKPRPAAKAKDT----KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             K+KP  K +PAAKAK      K   +K  AK KPAAKPKA A  KAKPAAK K  A  KP
Sbjct:   177 KAKPAAKAKPAAKAKPAAKPVKTAAAKPAAKAKPAAKPKAAA--KAKPAAKAKPAAKAKP 234

Query:   711 --KPAXA 725
               KPA A
Sbjct:   235 AAKPAKA 241

 Score = 162 (57.0 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
 Identities = 57/116 (49%), Positives = 63/116 (54%), Frame = +3

Query:   399 ASSLPLKKLVAAGKLVKVKGSFKLPPT---RPAAXX--XXXXXPAKKKKPAAAKSKPKPK 563
             A S    K  AA K  K K + K  P    +PAA         PA K KPAA K+KP  K
Sbjct:   138 AKSKAKPKAKAATKS-KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAA-KAKPAAK 195

Query:   564 P------RPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXA--AXKPKPA 719
             P      +PAAKAK   A K KA AK KPAAK  AK  AKAKPAAKP   A  + +  PA
Sbjct:   196 PVKTAAAKPAAKAKP--AAKPKAAAKAKPAAK--AKPAAKAKPAAKPAKAARTSTRTSPA 251

Query:   720 XA 725
              A
Sbjct:   252 AA 253

 Score = 156 (54.9 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
 Identities = 50/114 (43%), Positives = 60/114 (52%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPT---RPAAXXXXXXXPAKKK--KPAAA 542
             A+T+ +   +   K    A    K K + K  P    +PAA       P K    KPAA 
Sbjct:   148 AATKSKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPAA- 206

Query:   543 KSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             K+KP  KP+ AAKAK   A K+K  AK KPAAKP AKA A+      P A AA  PKPA
Sbjct:   207 KAKPAAKPKAAAKAKP--AAKAKPAAKAKPAAKP-AKA-ARTSTRTSPAAAAAA-PKPA 260

 Score = 147 (51.7 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
 Identities = 47/121 (38%), Positives = 58/121 (47%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAX--XXXXXXPAKKKKPAA 539
             +A+ A+     A + P  K   A K VK   +      +PAA         PA K KPAA
Sbjct:   171 KAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPAAKAKPAAKPKAAAKAKPAAKAKPAA 230

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-------KAPAKAKPAAKPKAXA 698
              K+KP  KP  AA+   T+ + + A A PKPAAK  A       KA AKAK A  P   A
Sbjct:   231 -KAKPAAKPAKAARTS-TRTSPAAAAAAPKPAAKKAAPVKKTPVKAAAKAKTAKSPAKKA 288

Query:   699 AXK 707
             A K
Sbjct:   289 AAK 291

 Score = 136 (47.9 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 44/118 (37%), Positives = 55/118 (46%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAX--XXXXXXPAKKKKPAA 539
             +A+ A+     A + P  K   A K VK   +      +PAA         PA K KPAA
Sbjct:   171 KAKPAAKAKPAAKAKPAAKAKPAAKPVKTAAAKPAAKAKPAAKPKAAAKAKPAAKAKPAA 230

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
              K+KP  KP  AA+   T+ + + A A PKPAAK       KA P  K    AA K K A
Sbjct:   231 -KAKPAAKPAKAARTS-TRTSPAAAAAAPKPAAK-------KAAPVKKTPVKAAAKAKTA 281

 Score = 114 (40.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 37/103 (35%), Positives = 49/103 (47%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGK---LVKVKGSFKLPPT---RPAAXXXXXXXPAKKK 527
             +A+ A+  ++ A++ P  K   A K     K K + K  P    +PAA        + + 
Sbjct:   189 KAKPAAKPVKTAAAKPAAKAKPAAKPKAAAKAKPAAKAKPAAKAKPAAKPAKAARTSTRT 248

Query:   528 KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAK 665
              PAAA + PKP    A KA   K T  KA AK K A  P  KA AK
Sbjct:   249 SPAAAAAAPKPA---AKKAAPVKKTPVKAAAKAKTAKSPAKKAAAK 291

 Score = 63 (22.2 bits), Expect = 6.5e-11, Sum P(2) = 6.5e-11
 Identities = 13/41 (31%), Positives = 23/41 (56%), Frame = +1

Query:   133 AVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRP 255
             A +PA +PA+A    + K +   ++KAK   + KP   ++P
Sbjct:   128 AAKPAKKPAAAKSKAKPKAKAATKSKAKPAAKAKPAAKAKP 168

 Score = 50 (17.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
 Identities = 13/43 (30%), Positives = 20/43 (46%), Frame = +1

Query:    94 FPLISMATEEPTVAVEPAP-EPASADPPLEEKEETKPEAKAKK 219
             FP +   +EEPT   + AP EP +   P + +     E   K+
Sbjct:    23 FPPVVNESEEPTAKPKKAPKEPKAKKAPAKPRTHPTYEEMVKE 65


 >gi|585238|sp|Q08864|H11_VOLCA  HISTONE H1-I >gi|541544|pir||JN0747 histone H1-I
            - Volvox carteri >gi|349585|gb|AAA74723.1| (L07946) histone H1-I
            [Volvox carteri]
            Length = 261

Frame  3 hits (HSPs):   ____________    __________________________________
Frame  1 hits (HSPs):   ____________________     ________________         
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |         |         |        |  | 261
                       0        50      100       150       200      250
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       41..134
   DOMO                 DM03514:                                 136..259
   Entrez               Domain: GLOBULAR (BY SIMILARITY).        56..133
   Entrez               dna-binding site: POTENTIAL.             139..142
   Entrez               Domain: 7 X 5 AA REPEATS OF K-K-[AS]-T-P 136..250
   Entrez               Repetitive region: 1.                    136..140
   Entrez               Repetitive region: 2.                    188..192
   Entrez               Repetitive region: 3 (APPROXIMATE).      199..203
   Entrez               Repetitive region: 4.                    209..213
   Entrez               Repetitive region: 5.                    230..234
   Entrez               Repetitive region: 6.                    236..240
   Entrez               Repetitive region: 7.                    246..250
   PFAM                 linker_histone: linker histone H1 and H5 57..129
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     5..59
   PRODOM               PD000373: H1(14) H11(5) H12(4)           61..104
   PRODOM               PD194180: H11_VOLCA                      106..136
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     138..256
__________________


  Plus Strand HSPs:

 Score = 190 (66.9 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
 Identities = 50/105 (47%), Positives = 63/105 (60%), Frame = +1

Query:   109 MATEEPTVAVEPAPEPA-SADPPLEEKEETK-P-EAKAKKT-KEPKPKKVSRPRNPPTHP 276
             M+  E    V PA E A +A+ P  +  + K P + KA K  KEPK  K  +P+  PTHP
Sbjct:     1 MSETEAAPVVAPAAEAAPAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAAPTHP 60

Query:   277 SYEEMVKDAITSLKEKTGSSQYAIAKFIEEKH-KQL-PPNFKKLL 405
              Y EMVKDAIT+LKE+ GSS  A+ KFIE K+ K +   NF K L
Sbjct:    61 PYIEMVKDAITTLKERNGSSLPALKKFIENKYGKDIHDKNFAKTL 105

 Score = 115 (40.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 45/144 (31%), Positives = 58/144 (40%), Frame = +3

Query:   321 ENRF-EPIRDCEVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPA-AX 494
             EN++ + I D    +  +Q   T ++    + +K      + +K K     P    A   
Sbjct:    89 ENKYGKDIHDKNFAKTLSQVVKTFVKGGKLVKVKGSFKLSEALKAKAKKSTPKKAKADGE 148

Query:   495 XXXXXXPAKKKKPAAAKSK--PKPKPRPAAKAKDTKATKSKA-PA--KPKPAAKPKAKAP 659
                    AK KK  A K    PK K     K K  K  K KA P   KPK AA PK+   
Sbjct:   149 AKPKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKEKVEKKKATPKAEKPKKAATPKSAGK 208

Query:   660 AKA--KPAAKPKAXAAXKPKPAXA 725
              KA  KP A PK+ A    KP  A
Sbjct:   209 KKATPKPKAAPKSPAKKDAKPKKA 232

 Score = 112 (39.4 bits), Expect = 2.7e-24, Sum P(2) = 2.7e-24
 Identities = 30/69 (43%), Positives = 33/69 (47%), Frame = +3

Query:   513 PAKKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPA-AKPK 689
             P K+KK    K K  PK     KA   K+   K  A PKP A PK+ A   AKP  A P 
Sbjct:   177 PKKEKKEKVEKKKATPKAEKPKKAATPKSA-GKKKATPKPKAAPKSPAKKDAKPKKATPS 235

Query:   690 AXAAXKPKPA 719
               AA K  PA
Sbjct:   236 KKAAPKKAPA 245

 Score = 103 (36.3 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
 Identities = 36/107 (33%), Positives = 47/107 (43%), Frame = +3

Query:   363 GEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKP-AA 539
             GEA+   +E +   +  +KK  A  + V+     K               P K   P +A
Sbjct:   147 GEAKPKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKEKVEKKKATPKAEKPKKAATPKSA 206

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAK-AKPAAK 683
              K K  PKP+ A K+   K  K K  A P   A PK KAPAK + P AK
Sbjct:   207 GKKKATPKPKAAPKSPAKKDAKPKK-ATPSKKAAPK-KAPAKKSTPKAK 253

 Score = 101 (35.6 bits), Expect = 0.051, P = 0.050
 Identities = 24/52 (46%), Positives = 30/52 (57%), Frame = +3

Query:   534 AAAKSKPKPKPRPAAKAKDTKATKSKAPAKPK-PAAKPKAKAPAKAKPAAKP 686
             AA    P  +  PAA+A   KA K+KAP +PK P A  + KAP + KP A P
Sbjct:     6 AAPVVAPAAEAAPAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAAP 57

 Score = 97 (34.1 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
 Identities = 41/112 (36%), Positives = 52/112 (46%), Frame = +3

Query:   363 GEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAA 542
             GEA+   +E +   +  +KK  A  + V+     K               P K   P +A
Sbjct:   147 GEAKPKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKEKVEKKKATPKAEKPKKAATPKSA 206

Query:   543 ---KSKPKPK--PR-PAAK-AKDTKATKSKAPAKPK-PAAK--PKAKAPAKAK 671
                K+ PKPK  P+ PA K AK  KAT SK  A  K PA K  PKAK  AK+K
Sbjct:   207 GKKKATPKPKAAPKSPAKKDAKPKKATPSKKAAPKKAPAKKSTPKAKE-AKSK 258

 Score = 86 (30.3 bits), Expect = 2.8, P = 0.94
 Identities = 24/56 (42%), Positives = 30/56 (53%), Frame = +3

Query:   534 AAAKSKPKPKPRPAAKAKDTKATKSKAPAKPK-PAAKPKAKAPAKAKPAAKP---- 686
             AA    P  +  PAA+A   KA K+KAP +PK P A  + KAP + KP A P    
Sbjct:     6 AAPVVAPAAEAAPAAEAPKAKAPKAKAPKQPKAPKAPKEPKAPKEKKPKAAPTHPP 61

 Score = 63 (22.2 bits), Expect = 2.2, Sum P(2) = 0.88
 Identities = 19/55 (34%), Positives = 27/55 (49%), Frame = +1

Query:    97 PLISMATEEPTVAVEPAPEPAS-ADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRN 261
             P  S A  +   AV+    P    + P +EK+E K E K    K  KPKK + P++
Sbjct:   151 PKKSEAKPKKAEAVKKTKAPKEKVERPKKEKKE-KVEKKKATPKAEKPKKAATPKS 205

 Score = 62 (21.8 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
 Identities = 21/59 (35%), Positives = 26/59 (44%), Frame = +3

Query:   447 KVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAK 623
             K  G  K  P   AA        AK KK   +K K  PK  PA K+   KA ++K+  K
Sbjct:   204 KSAGKKKATPKPKAAPKSPAKKDAKPKKATPSK-KAAPKKAPAKKSTP-KAKEAKSKGK 260

 Score = 55 (19.4 bits), Expect = 1.4, Sum P(3) = 0.75
 Identities = 24/86 (27%), Positives = 41/86 (47%), Frame = +1

Query:   202 EAKAKKT--KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK 375
             +AKAKK+  K+ K    ++P+     P   E VK    + KEK    +    + +E+K K
Sbjct:   132 KAKAKKSTPKKAKADGEAKPKKSEAKPKKAEAVKKT-KAPKEKVERPKKEKKEKVEKK-K 189

Query:   376 QLPPNFKKLLLYH*RSSSPPENSSKSKA 459
               P   K       + ++ P+++ K KA
Sbjct:   190 ATPKAEKP------KKAATPKSAGKKKA 211

 Score = 41 (14.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
 Identities = 10/29 (34%), Positives = 12/29 (41%), Frame = +1

Query:    97 PLISMATEEPTVAVEPAPEPASADPPLEE 183
             P    A +EP    E  P+ A   PP  E
Sbjct:    36 PKAPKAPKEPKAPKEKKPKAAPTHPPYIE 64


 >gi|1084419|pir||S53502  histone H1 - common tobacco >gi|790929|gb|AAC41651.1|
            (L29456) histone H1 [Nicotiana tabacum]
            Length = 282

Frame  3 hits (HSPs):                     ________________________________
Frame  1 hits (HSPs):   ____________________________________              
Annotated Domains:             _________________                          
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 282
                       0       50      100      150      200      250
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       42..133
__________________


  Plus Strand HSPs:

 Score = 287 (101.0 bits), Expect = 2.9e-24, P = 2.9e-24
 Identities = 75/202 (37%), Positives = 100/202 (49%), Frame = +1

Query:   109 MATEEPTVAVEPAPEPA--SADPPLEEKEETKPEAKAKKTKEPKPKKVSRPR--NPPTHP 276
             MATEEP V  E   E     A+P  EE        + KK KE + KK + PR  NPPTHP
Sbjct:     1 MATEEPLVVTEIVTEAVVVEAEPAKEENSPAAEPDEPKKEKEIEAKKPAAPRKRNPPTHP 60

Query:   277 SYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPENSSKSK 456
             SY EM+KDAI +LK+KTGSSQ+AI KFIE+K K LP NF+KLLL   +      +    K
Sbjct:    61 SYFEMIKDAIVTLKDKTGSSQHAITKFIEDKQKNLPSNFRKLLLVQLKKLVA--SGKLVK 118

Query:   457 ARSSSHLPDLLXXX-XXXXXRQRRKSPQLPSPSLSLSPGPLRKPRILRQLNRRHQLSPSQ 633
              +SS  LP               +K P     +    P P  KP+ +    +      ++
Sbjct:   119 VKSSYKLPAARSAAPKAAATAPAKKKPGAKPKATKAKPKP--KPKTVAPKAKTATKPKAK 176

Query:   634 LLSLKPKLQPRPNPLLNQRLXLLXSP 711
                +K KL  +  P +  +   +  P
Sbjct:   177 QRQVKAKLVAKAKPAVKPKAAAVAMP 202

 Score = 243 (85.5 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 59/102 (57%), Positives = 65/102 (63%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKPKPKPRPAAKA 584
             LKKLVA+GKLVKVK S+KLP  R AA       PAKKK   KP A K+KPKPKP+     
Sbjct:   107 LKKLVASGKLVKVKSSYKLPAARSAAPKAAATAPAKKKPGAKPKATKAKPKPKPK----- 161

Query:   585 KDTKATKSKAPAKPKPAAKP-KAKAPAKAKPAAKPKAXAAXKPKPA 719
               T A K+K   KPK   +  KAK  AKAKPA KPKA A   PK A
Sbjct:   162 --TVAPKAKTATKPKAKQRQVKAKLVAKAKPAVKPKAAAVAMPKAA 205

 Score = 138 (48.6 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 46/119 (38%), Positives = 56/119 (47%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAG-KLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA---A 542
             A S   + A++ P KK   A  K  K K   K P T            AK+++  A   A
Sbjct:   128 ARSAAPKAAATAPAKKKPGAKPKATKAKPKPK-PKTVAPKAKTATKPKAKQRQVKAKLVA 186

Query:   543 KSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKA-PAK-AKPAAKPKAXAAXKPKP 716
             K+KP  KP+ AA A    A K K P K K AAKPKAK  PAK A+ A +        PKP
Sbjct:   187 KAKPAVKPKAAAVAMPKAAEKPKTPVKTKAAAKPKAKEKPAKVARTATRSTPSRKAAPKP 246

 Score = 124 (43.7 bits), Expect = 0.00011, P = 0.00011
 Identities = 51/132 (38%), Positives = 61/132 (46%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAG-KLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA---A 542
             A S   + A++ P KK   A  K  K K   K P T            AK+++  A   A
Sbjct:   128 ARSAAPKAAATAPAKKKPGAKPKATKAKPKPK-PKTVAPKAKTATKPKAKQRQVKAKLVA 186

Query:   543 KSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKA-PAK-AKPAAK--PKAXAAXKP 710
             K+KP  KP+ AA A    A K K P K K AAKPKAK  PAK A+ A +  P   AA KP
Sbjct:   187 KAKPAVKPKAAAVAMPKAAEKPKTPVKTKAAAKPKAKEKPAKVARTATRSTPSRKAAPKP 246

Query:   711 --------KPAXA 725
                     K A A
Sbjct:   247 VAKKVPVKKAAPA 259

 Score = 113 (39.8 bits), Expect = 0.0023, P = 0.0023
 Identities = 44/103 (42%), Positives = 53/103 (51%), Frame = +3

Query:   429 AAGKLVKVKGSFKLPPT-RPAAXXXXXXXPAKKKK-PAAAKS--KPKPKPRPAAKAKD-T 593
             A  + VK K   K  P  +P A        A+K K P   K+  KPK K +PA  A+  T
Sbjct:   175 AKQRQVKAKLVAKAKPAVKPKAAAVAMPKAAEKPKTPVKTKAAAKPKAKEKPAKVARTAT 234

Query:   594 KATKSKAPAKPKPAAKPKAKAPAK-AKPAAKP-KAXAAXKP-KPAXA 725
             ++T S+  A PKP AK   K P K A PAAK  KA  A  P K A A
Sbjct:   235 RSTPSRKAA-PKPVAK---KVPVKKAAPAAKSVKAKTAKSPAKRASA 277

 Score = 83 (29.2 bits), Expect = 0.0013, Sum P(2) = 0.0013
 Identities = 34/95 (35%), Positives = 42/95 (44%), Frame = +3

Query:   399 ASSLP-LKKLVAAGKLVKVKGSFKLP-PTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRP 572
             A + P +K   AA  + K     K P  T+ AA       PAK  +  A +S P  K  P
Sbjct:   186 AKAKPAVKPKAAAVAMPKAAEKPKTPVKTKAAAKPKAKEKPAKVAR-TATRSTPSRKAAP 244

Query:   573 AAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
                AK     K+ APA     AK  AK+PAK   A K
Sbjct:   245 KPVAKKVPVKKA-APAAKSVKAKT-AKSPAKRASARK 279

 Score = 72 (25.3 bits), Expect = 0.0013, Sum P(2) = 0.0013
 Identities = 24/84 (28%), Positives = 34/84 (40%), Frame = +1

Query:   100 LISMATEEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPS 279
             L+ + +     A   A   A+A  P ++K   KP+A   K K PKPK V+      T P 
Sbjct:   116 LVKVKSSYKLPAARSAAPKAAATAPAKKKPGAKPKATKAKPK-PKPKTVAPKAKTATKPK 174

Query:   280 YEEMVKDAITSLKEKTGSSQYAIA 351
              ++    A    K K      A A
Sbjct:   175 AKQRQVKAKLVAKAKPAVKPKAAA 198

 Score = 63 (22.2 bits), Expect = 0.20, Sum P(2) = 0.18
 Identities = 27/86 (31%), Positives = 34/86 (39%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAG-----KLVKV-KGSFKLPPTRPAAXX-XXXXXPAKKK 527
             A  A  +  E    P+K   AA      K  KV + + +  P+R AA        P KK 
Sbjct:   197 AAVAMPKAAEKPKTPVKTKAAAKPKAKEKPAKVARTATRSTPSRKAAPKPVAKKVPVKKA 256

Query:   528 KPAAAKSKPKPKPRPAAKAKDTKATK 605
              PAA   K K    PA +A   K  K
Sbjct:   257 APAAKSVKAKTAKSPAKRASARKGRK 282


 >gi|454105|gb|AAC14379.1|  (L28724) histone H1-I-1 [Chironomus thummi]
            Length = 243

Frame  3 hits (HSPs):   ____________         _____________________________
Frame  1 hits (HSPs):   ______________________________________            
                        __________________________________________________
Database sequence:     |          |         |         |         |         | 243
                       0         50       100       150       200

  Plus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
 Identities = 51/146 (34%), Positives = 74/146 (50%), Frame = +1

Query:   121 EPTVAVEPAPEPAS-ADPPLEEKEETK--PEA-KAKKTKEPKPKKVSRPRNPPTHPSYEE 288
             +P   +E   E A  A PP  +KE+    P+A K+ K ++PK  K  +P+  PTHP   E
Sbjct:     3 DPAPEIEAPVEAAPVASPPKGKKEKAPKAPKAPKSPKAEKPKSDKPKKPKVAPTHPPVSE 62

Query:   289 MVKDAITSLKEKTGSSQYAIAKFIEEKHK----QLPPNFKKLLLYH*RSSSPPENSSKSK 456
             MV +A+T+LKE+ GSS  AI KF+  ++K    +L P  KK L       +  +   K  
Sbjct:    63 MVVNAVTTLKERGGSSLIAIKKFVAAQYKVDVEKLVPFIKKFLKASVAKGTLLQAKGKG- 121

Query:   457 ARSSSHLPDLLXXXXXXXXRQRRKSPQLPSP 549
             A  S  LP           ++ +K P  P P
Sbjct:   122 ASGSFKLPP----AAKKVEKKPKKVPSTPKP 148

 Score = 158 (55.6 bits), Expect = 1.7e-09, P = 1.7e-09
 Identities = 48/112 (42%), Positives = 56/112 (50%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKK----KPAAAKSKPKPKP 566
             LK  VA G L++ KG     SFKLPP            P+  K    KP     + K   
Sbjct:   105 LKASVAKGTLLQAKGKGASGSFKLPPAAKKVEKKPKKVPSTPKPKTTKPKRVTGEKKVVK 164

Query:   567 RPAAKAKDTK-ATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP-KPA 719
             +PAAK  + K ATK+  PA  K  AKP AK PA AKP  KP+A  A K  KPA
Sbjct:   165 KPAAKKPEAKKATKTAKPAAKKVVAKPAAKKPA-AKPVKKPEAKKATKAAKPA 216

 Score = 144 (50.7 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 51/130 (39%), Positives = 64/130 (49%), Frame = +3

Query:   312 AEGENRFEPIRDCEVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAA 491
             A G  +  P    +V +   +  ST   + +  P K++    K+VK K + K P  + A 
Sbjct:   122 ASGSFKLPPAAK-KVEKKPKKVPSTPKPKTTK-P-KRVTGEKKVVK-KPAAKKPEAKKAT 177

Query:   492 XXXXXXXPAKKK---KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPA 662
                    PA KK   KPAA K   KP  +P AK    KATK+  PA  K  AKP AK PA
Sbjct:   178 KTAK---PAAKKVVAKPAAKKPAAKPVKKPEAK----KATKAAKPAAKKVVAKPAAKKPA 230

Query:   663 KAKPAAKPKAXAA 701
              AKPA KP A  A
Sbjct:   231 -AKPAKKPAAKKA 242

 Score = 142 (50.0 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
 Identities = 44/95 (46%), Positives = 51/95 (53%), Frame = +3

Query:   417 KKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKPKPKPRPAAKAK 587
             K++    K+VK K + K P  + A        PA KK   KPAA K   KP  +P AK  
Sbjct:   154 KRVTGEKKVVK-KPAAKKPEAKKATKTAK---PAAKKVVAKPAAKKPAAKPVKKPEAK-- 207

Query:   588 DTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAA 701
               KATK+  PA  K  AKP AK PA AKPA KP A  A
Sbjct:   208 --KATKAAKPAAKKVVAKPAAKKPA-AKPAKKPAAKKA 242

 Score = 139 (48.9 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
 Identities = 44/94 (46%), Positives = 48/94 (51%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKPKPKPRPAAKAKD 590
             K V   K V  K + K P  + A        PA KK   KPAA K   KP  +P AK   
Sbjct:   154 KRVTGEKKVVKKPAAKKPEAKKATKTAK---PAAKKVVAKPAAKKPAAKPVKKPEAK--- 207

Query:   591 TKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAA 701
              KATK+  PA  K  AKP AK PA AKPA KP A  A
Sbjct:   208 -KATKAAKPAAKKVVAKPAAKKPA-AKPAKKPAAKKA 242

 Score = 125 (44.0 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
 Identities = 33/68 (48%), Positives = 38/68 (55%), Frame = +3

Query:   519 KKKKPAAAKSKPKPKPRPAAKAKDTK-ATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAX 695
             K  KP     + K   +PAAK  + K ATK+  PA  K  AKP AK PA AKP  KP+A 
Sbjct:   149 KTTKPKRVTGEKKVVKKPAAKKPEAKKATKTAKPAAKKVVAKPAAKKPA-AKPVKKPEAK 207

Query:   696 AAXKP-KPA 719
              A K  KPA
Sbjct:   208 KATKAAKPA 216

 Score = 120 (42.2 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
 Identities = 39/89 (43%), Positives = 43/89 (48%), Frame = +3

Query:   447 KVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPR-PAAKAKDTKATKSKAPAK 623
             +V G  K+   +PAA         K  KPAA K   KP  + PAAK       K KA   
Sbjct:   155 RVTGEKKVVK-KPAAKKPEAKKATKTAKPAAKKVVAKPAAKKPAAKPVKKPEAK-KATKA 212

Query:   624 PKPAAKPKAKAPAKAKPAAKP-KAXAAXKPK 713
              KPAAK     PA  KPAAKP K  AA K K
Sbjct:   213 AKPAAKKVVAKPAAKKPAAKPAKKPAAKKAK 243

 Score = 117 (41.2 bits), Expect = 0.00053, P = 0.00053
 Identities = 47/102 (46%), Positives = 51/102 (50%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKK--KKPAAAKSKPKPKPRP 572
             LK  VA G L++ KG     SFKLPP             AKK  KKP    S PKPK   
Sbjct:   105 LKASVAKGTLLQAKGKGASGSFKLPPA------------AKKVEKKPKKVPSTPKPKT-- 150

Query:   573 AAKAKDTKATKSKAPAKPKPAAK-PKAKAPAK-AKPAAKPKAXAAXKPKPA 719
                 K  + T  K   K KPAAK P+AK   K AKPAAK         KPA
Sbjct:   151 ---TKPKRVTGEKKVVK-KPAAKKPEAKKATKTAKPAAKKVVAKPAAKKPA 197

 Score = 82 (28.9 bits), Expect = 7.0, P = 1.0
 Identities = 24/58 (41%), Positives = 26/58 (44%), Frame = +3

Query:   546 SKPKPK---PRPAAK-AKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             S P P+   P  AA  A   K  K KAP  PK    PKA+ P   KP  KPK      P
Sbjct:     2 SDPAPEIEAPVEAAPVASPPKGKKEKAPKAPKAPKSPKAEKPKSDKPK-KPKVAPTHPP 59

 Score = 72 (25.3 bits), Expect = 5.1, Sum P(2) = 0.99
 Identities = 23/58 (39%), Positives = 26/58 (44%), Frame = +3

Query:   432 AGKLVKVKGSFKLPPTRP-----AAXXXXXXXPAKKK---KPAAAKSKPKPKPRPAAK 581
             A K V  K + K P  +P     A        PA KK   KPAA K   KP  +PAAK
Sbjct:   183 AAKKVVAKPAAKKPAAKPVKKPEAKKATKAAKPAAKKVVAKPAAKKPAAKPAKKPAAK 240

 Score = 47 (16.5 bits), Expect = 5.1, Sum P(2) = 0.99
 Identities = 14/56 (25%), Positives = 22/56 (39%), Frame = +1

Query:    97 PLISMATEEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNP 264
             P  +   E+    V   P+P +  P     E  K   K    K+P+ KK ++   P
Sbjct:   129 PPAAKKVEKKPKKVPSTPKPKTTKPKRVTGE--KKVVKKPAAKKPEAKKATKTAKP 182

 Score = 46 (16.2 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
 Identities = 15/26 (57%), Positives = 16/26 (61%), Frame = +1

Query:   199 PEAKAKKTKEPKPKKV-SRPRNPPTHP 276
             P A AKK  E KPKKV S P+   T P
Sbjct:   129 PPA-AKKV-EKKPKKVPSTPKPKTTKP 153


 >gi|585241|sp|P37218|H1_LYCES  HISTONE H1 >gi|629668|pir||S45662 histone H1 -
            tomato >gi|424100|gb|AAA50578.1| (U03391) histone H1 [Lycopersicon
            esculentum]
            Length = 287

Frame  3 hits (HSPs):             ________________________________________
Frame  1 hits (HSPs):   ________________________________                  
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |        |        |       |        |        |      | 287
                       0       50      100     150      200      250
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       39..130
   PFAM                 linker_histone: linker histone H1 and H5 55..125
   PRODOM               PD010330: H1(2) O22672(1) O65820(1)      2..54
   PRODOM               PD000373: H1(14) H11(5) H12(4)           56..102
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     127..279
__________________


  Plus Strand HSPs:

 Score = 269 (94.7 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 74/187 (39%), Positives = 91/187 (48%), Frame = +1

Query:   109 MATEEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTK-EPKPKKVSRPRN---PPTHP 276
             MATEEP +  E   E A+   P   K+E  P AK+ K K E K KK + PR     PTHP
Sbjct:     1 MATEEPVIVNEVVEEQAA---PETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHP 57

Query:   277 SYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPENSSKSK 456
              Y EM+KDAI +LKE+TGSSQ+AI KFIEEK K LP NFKKLLL   +     E   K K
Sbjct:    58 PYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVK 117

Query:   457 ARSSSHLPDLLXXXXXXXXRQRRKSPQLPSPSLSLSPGPLRKPRILRQLNRRHQLSPSQL 636
               +S  LP              +K P       +  P    KP+       +        
Sbjct:   118 --NSYKLPS--GSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPA 173

Query:   637 LSLKPKLQPRP 669
                KP  + +P
Sbjct:   174 AKAKPAAKAKP 184

 Score = 253 (89.1 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 78/148 (52%), Positives = 89/148 (60%), Frame = +3

Query:   330 FEPIRDCEV----HRGEAQAASTEL--QEASSLP----------LKKLVAAGKLVKVKGS 461
             FE I+D  V      G +Q A T+   ++  SLP          LKK VA+ KLVKVK S
Sbjct:    60 FEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLKKFVASEKLVKVKNS 119

Query:   462 FKLPP-TRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAA 638
             +KLP  ++PAA       PAKKK PAAAKSKP  KP+ A K K   A K+K  AK KPAA
Sbjct:   120 YKLPSGSKPAAAAV----PAKKK-PAAAKSKPAAKPKAAVKPKAKPAAKAKPAAKAKPAA 174

Query:   639 K--PKAKA-PA-KAKPAAKPKAXAAXKPKPAXA 725
             K  P AKA PA KAKPAAK K  A  KPK A A
Sbjct:   175 KAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAA 207

 Score = 216 (76.0 bits), Expect = 9.6e-17, P = 9.6e-17
 Identities = 64/118 (54%), Positives = 70/118 (59%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPP-TRPAAXXX-XXXXPAK-KKKPAAA-KSKPKPKPRPAAK 581
             LKK VA+ KLVKVK S+KLP  ++PAA        PA  K KPAA  K+  KPK +PAAK
Sbjct:   104 LKKFVASEKLVKVKNSYKLPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVKPKAKPAAK 163

Query:   582 AKDTKATKSKAPAKPKPAAKPKAKA-PA-KAKPAAK--PKAXAAXKPKPAX------A 725
             AK     K  A AKP   AKP AKA PA KAKP AK  PKA AA KPK A       A
Sbjct:   164 AKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPA 221

 Score = 183 (64.4 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 52/104 (50%), Positives = 59/104 (56%), Frame = +3

Query:   399 ASSLPLKKLVAAGK---LVKVKGSFKLPPTRPAAXX--XXXXXPAKKKKPAAAKSKPKPK 563
             A+++P KK  AA K     K K + K P  +PAA         PA K KPAA K+KP  K
Sbjct:   130 AAAVPAKKKPAAAKSKPAAKPKAAVK-PKAKPAAKAKPAAKAKPAAKAKPAA-KAKPAAK 187

Query:   564 PRPAAKAKDTKATKSKAPA--KPKPAAKPKAKAPAKAKPAAKPKAXA 698
              +PAAKAK     K KA A  KPK A KPKA APAK K A KP   A
Sbjct:   188 AKPAAKAKPVAKAKPKAAAAAKPKAAVKPKA-APAKTKAAVKPNLKA 233

 Score = 180 (63.4 bits), Expect = 8.1e-13, P = 8.1e-13
 Identities = 50/107 (46%), Positives = 56/107 (52%), Frame = +3

Query:   399 ASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA 578
             A+++P KK  AA K          P  +P A       PA K KPAA K+KP  K +PAA
Sbjct:   130 AAAVPAKKKPAAAK--------SKPAAKPKAAVKPKAKPAAKAKPAA-KAKPAAKAKPAA 180

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             KAK     K  A AKP   AKPKA A AK K A KPKA  A K K A
Sbjct:   181 KAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKPKAAPA-KTKAA 226

 Score = 168 (59.1 bits), Expect = 4.1e-11, P = 4.1e-11
 Identities = 52/109 (47%), Positives = 59/109 (54%), Frame = +3

Query:   399 ASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA 578
             A+++P KK  AA K          P  +P A       PA K KPAA K+KP  K +PAA
Sbjct:   130 AAAVPAKKKPAAAK--------SKPAAKPKAAVKPKAKPAAKAKPAA-KAKPAAKAKPAA 180

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
             KAK   A K+K  AK KP AK K KA A    AAKPKA  A KPK A A
Sbjct:   181 KAKP--AAKAKPAAKAKPVAKAKPKAAA----AAKPKA--AVKPKAAPA 221

 Score = 111 (39.1 bits), Expect = 0.0041, P = 0.0041
 Identities = 37/120 (30%), Positives = 48/120 (40%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKL---VKVKGSFKLPPTRPAA-XXXXXXXPAKKKKP 533
             +A+ A+     A + P  K   A K     K K + K  P   A         P    KP
Sbjct:   157 KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKP 216

Query:   534 AAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKA-PAKAKPAAKPKAXAAXKP 710
              AA +K K   +P  KAK T A  +K   +  P+ K   KA PAK +P  K  A     P
Sbjct:   217 KAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSRKAAPKATPAKKEPVKKAPAKNVKSP 276

 Score = 95 (33.4 bits), Expect = 0.30, P = 0.26
 Identities = 43/127 (33%), Positives = 51/127 (40%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKL---VKVKGSFKLPPT---RPAAXXXXXXXPAKKK 527
             +A+ A+     A + P  K   A K     K K + K  P    +P A        A K 
Sbjct:   157 KAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVKP 216

Query:   528 KPAAAKSKPKPKPRPAAKAKDTKATKS--------KAPAKPKPAAK-PKAKAPAK--AKP 674
             K A AK+K   KP   AK    K  K+        KA  K  PA K P  KAPAK    P
Sbjct:   217 KAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSRKAAPKATPAKKEPVKKAPAKNVKSP 276

Query:   675 AAK--PK 689
             A K  PK
Sbjct:   277 AKKATPK 283


 >gi|729655|sp|P40264|H12_GLYBA  HISTONE H1-II >gi|457120|gb|AAA62321.1| (L29102)
            histone H1-II [Glyptotendipes barbipes] >gi|1093319|prf||2103263B
            histone H1:ISOTYPE=II [Glyptotendipes barbipes]
            Length = 232

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):   ___________________                               
Annotated Domains:          ______________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |         |       | 232
                       0         50        100        150       200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       23..120
   PFAM                 linker_histone: linker histone H1 and H5 39..115
   PRODOM               PD000373: H1(14) H11(5) H12(4)           40..87
   PRODOM               PD194172: H12_GLYBA                      89..111
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     113..229
__________________


  Plus Strand HSPs:

 Score = 162 (57.0 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 43/89 (48%), Positives = 54/89 (60%), Frame = +1

Query:   139 EPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLK 318
             +PAPE A A P         P AKAKK K+PK  K  +P+ P THP   EMV +AI +LK
Sbjct:     3 DPAPEVAPAAPV------ASP-AKAKKEKKPKSDKPKKPKAPRTHPPVSEMVVNAIKTLK 55

Query:   319 EKTGSSQYAIAKFIEEKHK----QLPPNFKKLL 405
             E+ GSS  AI KF+  ++K    +L P  KK L
Sbjct:    56 ERGGSSLQAIKKFLVAQYKVDVEKLAPFIKKYL 88

 Score = 126 (44.4 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 45/111 (40%), Positives = 56/111 (50%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK- 527
             +V +   +A   +  +A++ P K    AG+  K K   K P    A         + KK 
Sbjct:   120 KVAKKPMKATGEKKPKAAAKPKK----AGE--KKKSIAKKPKAATATKVKKPVAKSTKKQ 173

Query:   528 ---KPAAAKSKPKPK--PRPAAKAKDTKATKSKAPAKPKPAAKPKAKAP-AKAKPAAK 683
                KPAA K+ PKPK  P+P A AK  K  K K  A PK A KP  K P A  KPAAK
Sbjct:   174 AAVKPAAKKAAPKPKAVPKPKA-AKPKKEAKPKKAAAPKAAKKPAQKKPKATKKPAAK 230

 Score = 125 (44.0 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 43/98 (43%), Positives = 47/98 (47%), Frame = +3

Query:   417 KKLVAAGKLVKVKGSFKLPPTRP-AAXXXXXXXPAKK--KKPAAAK-SKPKPKPRPAAKA 584
             KK  AA K  K     K    +P AA       P  K  KK AA K +  K  P+P A  
Sbjct:   132 KKPKAAAKPKKAGEKKKSIAKKPKAATATKVKKPVAKSTKKQAAVKPAAKKAAPKPKAVP 191

Query:   585 KDTKATKSKAPAKPKPAAKPKA-KAPAKAKPAAKPKAXA 698
             K  KA K K  AKPK AA PKA K PA+ KP A  K  A
Sbjct:   192 KP-KAAKPKKEAKPKKAAAPKAAKKPAQKKPKATKKPAA 229

 Score = 123 (43.3 bits), Expect = 2.0e-21, Sum P(2) = 2.0e-21
 Identities = 45/121 (37%), Positives = 53/121 (43%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFK-LPPTRPAAXXXXXXXPAKKKKPA 536
             +G+  + S +L  A+    KK   A K +K  G  K     +P          AKK K A
Sbjct:   102 KGKGASGSFKLPAAA----KKEKVAKKPMKATGEKKPKAAAKPKKAGEKKKSIAKKPKAA 157

Query:   537 AAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAK-AKP--AAKPKAX---A 698
              A    KP  +   K    K    KA  KPK   KPKA  P K AKP  AA PKA    A
Sbjct:   158 TATKVKKPVAKSTKKQAAVKPAAKKAAPKPKAVPKPKAAKPKKEAKPKKAAAPKAAKKPA 217

Query:   699 AXKPK 713
               KPK
Sbjct:   218 QKKPK 222

 Score = 122 (42.9 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
 Identities = 44/120 (36%), Positives = 52/120 (43%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFK-LPPTRPAAXXXXXXXPAKKKKPA 536
             +G+  + S +L  A+    KK   A K +K  G  K     +P          AKK K A
Sbjct:   102 KGKGASGSFKLPAAA----KKEKVAKKPMKATGEKKPKAAAKPKKAGEKKKSIAKKPKAA 157

Query:   537 AAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP-- 710
              A    KP  +   K    K    KA  KPK   KPKA   AK K  AKPK  AA K   
Sbjct:   158 TATKVKKPVAKSTKKQAAVKPAAKKAAPKPKAVPKPKA---AKPKKEAKPKKAAAPKAAK 214

Query:   711 KPA 719
             KPA
Sbjct:   215 KPA 217

 Score = 118 (41.5 bits), Expect = 6.8e-21, Sum P(2) = 6.8e-21
 Identities = 48/102 (47%), Positives = 50/102 (49%), Frame = +3

Query:   456 GSFKLPPTRPAAXXXXXXXPAK---KKKP-AAAKSKP----------KPKPRPAAKAKDT 593
             GSFKLP    A        P K   +KKP AAAK K           KPK   A K K  
Sbjct:   108 GSFKLPAA--AKKEKVAKKPMKATGEKKPKAAAKPKKAGEKKKSIAKKPKAATATKVKKP 165

Query:   594 KATKSKAPAKPKPAAK---PKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
              A  +K  A  KPAAK   PK KA  K K AAKPK  A  KPK A A
Sbjct:   166 VAKSTKKQAAVKPAAKKAAPKPKAVPKPK-AAKPKKEA--KPKKAAA 209

 Score = 115 (40.5 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 45/104 (43%), Positives = 53/104 (50%), Frame = +3

Query:   426 VAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKP--KPRPAAKA 584
             V  G+L++ KG     SFKLP    AA        AKK   A  + KPK   KP+ A + 
Sbjct:    93 VVKGELLQTKGKGASGSFKLP----AAAKKEKV--AKKPMKATGEKKPKAAAKPKKAGEK 146

Query:   585 KDTKATKSKAPAKPKPAAKPKAKAPAK---AKPAAK---PKAXAAXKPKPA 719
             K + A K KA    K   KP AK+  K    KPAAK   PK  A  KPK A
Sbjct:   147 KKSIAKKPKAATATK-VKKPVAKSTKKQAAVKPAAKKAAPKPKAVPKPKAA 196

 Score = 97 (34.1 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 33/87 (37%), Positives = 41/87 (47%), Frame = +3

Query:   393 QEASSLPLK-KLVAAGKLVK--VKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPK 563
             ++  S+  K K   A K+ K   K + K    +PAA       P    KP AAK K + K
Sbjct:   145 EKKKSIAKKPKAATATKVKKPVAKSTKKQAAVKPAAKKAAPK-PKAVPKPKAAKPKKEAK 203

Query:   564 PRPAAKAKDTKATKSKAPAKPKPAAKPKAK 653
             P+ AA  K   A K  A  KPK   KP AK
Sbjct:   204 PKKAAAPK---AAKKPAQKKPKATKKPAAK 230

 Score = 60 (21.1 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
 Identities = 24/69 (34%), Positives = 29/69 (42%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             A ST+ Q A     KK     K V    + K  P + A        P   KKPA  + KP
Sbjct:   167 AKSTKKQAAVKPAAKKAAPKPKAVPKPKAAK--PKKEAKPKKAAA-PKAAKKPA--QKKP 221

Query:   555 KPKPRPAAK 581
             K   +PAAK
Sbjct:   222 KATKKPAAK 230


 >gi|454121|gb|AAC14380.1|  (L28725) histone H1-II-2 [Chironomus thummi]
            Length = 227

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):      _________________                              
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 152 (53.5 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 34/71 (47%), Positives = 46/71 (64%), Frame = +1

Query:   205 AKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK--- 375
             AKAKK K+PK  K ++P+ P THP   EMV +A+ +LKE+ GSS  AI KF+  ++K   
Sbjct:    18 AKAKKEKKPKTDKPTKPKAPKTHPPVSEMVVNAVKTLKERGGSSLQAIKKFLVAQYKVDT 77

Query:   376 -QLPPNFKKLL 405
              +L P  KK L
Sbjct:    78 DKLAPFIKKFL 88

 Score = 145 (51.0 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 50/114 (43%), Positives = 58/114 (50%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK--KKPAAA 542
             A A   ++ +     +KK+ A  K   VK +  +     AA       P  K  KKPAAA
Sbjct:   113 AAAKKEKVVKPKVAAVKKVAAKPKKAGVKKT--IAKKAKAATATKIKKPVAKTTKKPAAA 170

Query:   543 K---SKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             K    K  PKP+ A KAK   A K K  AKPK AA PKAK PA  K   KPKA  A KP
Sbjct:   171 KPVTKKATPKPKAAPKAK--VAPKPKVAAKPKKAAAPKAKKPAAEK---KPKA--AKKP 222

 Score = 145 (51.0 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
 Identities = 49/115 (42%), Positives = 57/115 (49%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK--KKPAAA 542
             A A   ++ +     +KK+ A  K   VK +  +     AA       P  K  KKPAAA
Sbjct:   113 AAAKKEKVVKPKVAAVKKVAAKPKKAGVKKT--IAKKAKAATATKIKKPVAKTTKKPAAA 170

Query:   543 K---SKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPA---KAKPAAKPKAXAA 701
             K    K  PKP+ A KAK   A K K  AKPK AA PKAK PA   K K A KP A  A
Sbjct:   171 KPVTKKATPKPKAAPKAK--VAPKPKVAAKPKKAAAPKAKKPAAEKKPKAAKKPAAKKA 227

 Score = 134 (47.2 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
 Identities = 52/109 (47%), Positives = 55/109 (50%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXP--AKKKKPAAAKSKPKPKPRP 572
             LK  V  G+L++ KG     SFKLP    AA       P  A  KK AA   K   K   
Sbjct:    88 LKSAVEKGQLLQTKGKGASGSFKLPA---AAKKEKVVKPKVAAVKKVAAKPKKAGVKKTI 144

Query:   573 AAKAKDTKATKSKAP-AKP--KPAA-KPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             A KAK   ATK K P AK   KPAA KP  K  A  KP A PKA  A KPK A
Sbjct:   145 AKKAKAATATKIKKPVAKTTKKPAAAKPVTKK-ATPKPKAAPKAKVAPKPKVA 196

 Score = 124 (43.7 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
 Identities = 45/118 (38%), Positives = 52/118 (44%), Frame = +3

Query:   366 EAQAASTELQEAS-SLPLKKLVAAGKLVKVK-GSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             + Q   T+ + AS S  L       K+VK K  + K    +P          AKK K A 
Sbjct:    94 KGQLLQTKGKGASGSFKLPAAAKKEKVVKPKVAAVKKVAAKPKKAGVKKTI-AKKAKAAT 152

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK-P 716
             A    KP  +   K    K    KA   PKP A PKAK   K K AAKPK  AA K K P
Sbjct:   153 ATKIKKPVAKTTKKPAAAKPVTKKAT--PKPKAAPKAKVAPKPKVAAKPKKAAAPKAKKP 210

Query:   717 A 719
             A
Sbjct:   211 A 211

 Score = 78 (27.5 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 31/67 (46%), Positives = 33/67 (49%), Frame = +3

Query:   525 KKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAX 704
             K PAAAK +   KP+ AA  K   A   KA  K K  AK KAKA A A    KP A    
Sbjct:   110 KLPAAAKKEKVVKPKVAA-VKKVAAKPKKAGVK-KTIAK-KAKA-ATATKIKKPVAKTTK 165

Query:   705 KPKPAXA 725
             KP  A A
Sbjct:   166 KP--AAA 170


 >gi|2564105|gb|AAC15914.1|  (AF007904) histone H1 [Chaetopterus variopedatus]
            Length = 202

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):     _______________                                 
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200

  Plus Strand HSPs:

 Score = 172 (60.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 56/100 (56%), Positives = 60/100 (60%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA 578
             LK+ VAAGKLV+ KG     SFKL     AA       PAKK  PAA K+    KP+ AA
Sbjct:    80 LKQAVAAGKLVQTKGTGAAGSFKLSA---AAKAEKPKKPAKK--PAAKKAT---KPKAAA 131

Query:   579 KAKDTKATKSKAPAKPKPAAKPK-AKAPAKAKPAAK--PKAXAAXKPK 713
             K K  K  K KA AKPK   K K AK P KAK A K  PK  AA KPK
Sbjct:   132 KPKKPKTPKKKAAAKPKKEKKEKKAKTPKKAKAAVKKTPKKAAA-KPK 178

 Score = 159 (56.0 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
 Identities = 56/118 (47%), Positives = 61/118 (51%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXX-XXXPAKKK--KP-AAAK-SKPK-P 560
             LK+ VAAGKLV+ KG     SFKL     A         PA KK  KP AAAK  KPK P
Sbjct:    80 LKQAVAAGKLVQTKGTGAAGSFKLSAAAKAEKPKKPAKKPAAKKATKPKAAAKPKKPKTP 139

Query:   561 KPRPAAKAK-DTKATKSKAPAKPKPAAK--PKAKA--PAKAKPAAKPKAXAAXKPKPA 719
             K + AAK K + K  K+K P K K A K  PK  A  P   K AAKPK       KPA
Sbjct:   140 KKKAAAKPKKEKKEKKAKTPKKAKAAVKKTPKKAAAKPKTVKKAAKPKTPKKAAKKPA 197

 Score = 131 (46.1 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
 Identities = 50/110 (45%), Positives = 53/110 (48%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXX-XXXPAKKK--KP-AAAK-SKPK-PKPRPAAK 581
             KLV   K     GSFKL     A         PA KK  KP AAAK  KPK PK + AAK
Sbjct:    88 KLVQT-KGTGAAGSFKLSAAAKAEKPKKPAKKPAAKKATKPKAAAKPKKPKTPKKKAAAK 146

Query:   582 AK-DTKATKSKAPAKPKPAAK--PKAKA--PAKAKPAAKPKAXAAXKPKPA 719
              K + K  K+K P K K A K  PK  A  P   K AAKPK       KPA
Sbjct:   147 PKKEKKEKKAKTPKKAKAAVKKTPKKAAAKPKTVKKAAKPKTPKKAAKKPA 197

 Score = 129 (45.4 bits), Expect = 9.5e-14, Sum P(2) = 9.5e-14
 Identities = 42/98 (42%), Positives = 45/98 (45%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKP---AAAKSKPKPKPRPAAKAKD 590
             KL AA K  K K   K P  + A        P K K P   AAAK K + K + A   K 
Sbjct:   102 KLSAAAKAEKPKKPAKKPAAKKATKPKAAAKPKKPKTPKKKAAAKPKKEKKEKKAKTPKK 161

Query:   591 TKA----TKSKAPAKPKP---AAKPKAKAPAKAKPAAK 683
              KA    T  KA AKPK    AAKPK    A  KPAAK
Sbjct:   162 AKAAVKKTPKKAAAKPKTVKKAAKPKTPKKAAKKPAAK 199

 Score = 121 (42.6 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 35/67 (52%), Positives = 38/67 (56%), Frame = +3

Query:   525 KKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAX 704
             K  AAAK++ KPK +PA K    KATK KA AKPK    PK KA AK K   K K   A 
Sbjct:   102 KLSAAAKAE-KPK-KPAKKPAAKKATKPKAAAKPKKPKTPKKKAAAKPKKEKKEKK--AK 157

Query:   705 KPKPAXA 725
              PK A A
Sbjct:   158 TPKKAKA 164

 Score = 111 (39.1 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
 Identities = 45/108 (41%), Positives = 52/108 (48%), Frame = +3

Query:   360 RGEAQAASTELQEASSL--PLK--KLVAAGKLVKVKGSFKLPPTRPAA-XXXXXXXPAKK 524
             +G   A S +L  A+    P K  K  AA K  K K + K  P +P          P K+
Sbjct:    93 KGTGAAGSFKLSAAAKAEKPKKPAKKPAAKKATKPKAAAK--PKKPKTPKKKAAAKPKKE 150

Query:   525 KKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKP---AAKPKAKAPAKAKPAAK 683
             KK   AK+   PK   AA     K T  KA AKPK    AAKPK    A  KPAAK
Sbjct:   151 KKEKKAKT---PKKAKAA----VKKTPKKAAAKPKTVKKAAKPKTPKKAAKKPAAK 199

 Score = 103 (36.3 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 23/57 (40%), Positives = 31/57 (54%), Frame = +1

Query:   205 AKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK 375
             A A  TK  K     +P+ P  HP   +MV  AI +LK++ GSS  AI K+I   +K
Sbjct:    10 APATPTKAKKAAAPKKPKVPAAHPPVAQMVNAAIAALKDRKGSSLAAIKKYIAANYK 66


 >gi|2842461|emb|CAA11812.1|  (AJ224071) histone 1 [Mytilus edulis]
            Length = 191

Frame  3 hits (HSPs):                    _________________________________
Frame  1 hits (HSPs):      _____________                                  
                        __________________________________________________
Database sequence:     |            |            |             |          | 191
                       0           50          100           150

  Plus Strand HSPs:

 Score = 149 (52.5 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 48/99 (48%), Positives = 50/99 (50%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPP-TRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKD 590
             LK  + AG  VK K S K    T  +           KKKPA AK   KPK     KAK 
Sbjct:    76 LKLALRAG--VK-KNSLKQSKGTGASGSFRIGEAKVVKKKPAKAKKAAKPKAAKPKKAKS 132

Query:   591 TKATKSKAPAKP---KPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             T   K  A  KP   K AAKPKAK PA AK AAKPK  AA  P
Sbjct:   133 TPKKKKPAAKKPAGEKKAAKPKAKKPA-AKKAAKPKKPAAKSP 174

 Score = 137 (48.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 51/124 (41%), Positives = 64/124 (51%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKK-LVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKK---P 533
             +A++ +  L+ A    +KK  +   K     GSF++   +           A K K   P
Sbjct:    68 DAKSVNAHLKLALRAGVKKNSLKQSKGTGASGSFRIGEAKVVKKKPAKAKKAAKPKAAKP 127

Query:   534 AAAKSKPKPKPRPAAK--AKDTKATKSKAPAKP--KPAAKPK---AKAPAKAKPAAKPKA 692
               AKS PK K +PAAK  A + KA K KA  KP  K AAKPK   AK+PAK K AAKPKA
Sbjct:   128 KKAKSTPKKK-KPAAKKPAGEKKAAKPKAK-KPAAKKAAKPKKPAAKSPAKKK-AAKPKA 184

Query:   693 XAAXKPK 713
                 K K
Sbjct:   185 KKTPKKK 191

 Score = 126 (44.4 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
 Identities = 23/46 (50%), Positives = 31/46 (67%), Frame = +1

Query:   223 KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFI 360
             K PK K  ++P+ P  HP Y EM+  AI +LKE+ GSS+ AI K+I
Sbjct:    14 KSPKKKAAAKPKKPSAHPKYSEMIGKAIAALKERGGSSRQAILKYI 59

 Score = 115 (40.5 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
 Identities = 42/104 (40%), Positives = 51/104 (49%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G   + S  + EA  +  KK   A K  K K +    P + A        PA KK PA 
Sbjct:    93 KGTGASGSFRIGEAKVVK-KKPAKAKKAAKPKAA---KPKK-AKSTPKKKKPAAKK-PAG 146

Query:   540 AKSKPKPKPR-PAAK-AKDTKATKSKAPAKPKPAAKPKAKAPAKAK 671
              K   KPK + PAAK A   K   +K+PAK K AAKPKAK   K K
Sbjct:   147 EKKAAKPKAKKPAAKKAAKPKKPAAKSPAKKK-AAKPKAKKTPKKK 191

 Score = 42 (14.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 15/28 (53%), Positives = 15/28 (53%), Frame = +3

Query:   636 AKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             AK   K PAKAK AAKPKA        A
Sbjct:   106 AKVVKKKPAKAKKAAKPKA--------A 125


 >gi|729656|sp|P40265|H13_GLYBA  HISTONE H1-III >gi|457122|gb|AAA62322.1|
            (L29103) histone H1-III [Glyptotendipes barbipes]
            >gi|1093320|prf||2103263C histone H1:ISOTYPE=III [Glyptotendipes
            barbipes]
            Length = 228

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):   ____________________                              
Annotated Domains:          ______________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 228
                       0         50        100        150        200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       23..119
   PFAM                 linker_histone: linker histone H1 and H5 39..114
   PRODOM               PD000373: H1(14) H11(5) H12(4)           40..87
   PRODOM               PD194169: H13_GLYBA                      89..110
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     112..227
__________________


  Plus Strand HSPs:

 Score = 159 (56.0 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
 Identities = 43/89 (48%), Positives = 54/89 (60%), Frame = +1

Query:   139 EPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLK 318
             +PAPE ASA P         P AKAKK K+PK  K  + + P THP   EMV +AI +LK
Sbjct:     3 DPAPEVASAVPV------ASP-AKAKKEKKPKTDKPKKAKAPRTHPPVSEMVVNAIKTLK 55

Query:   319 EKTGSSQYAIAKFIEEKHK----QLPPNFKKLL 405
             E+ GSS  AI KF+  ++K    +L P  KK L
Sbjct:    56 ERGGSSLQAIKKFLAAQYKVDVDKLAPFIKKYL 88

 Score = 129 (45.4 bits), Expect = 1.9e-21, Sum P(2) = 1.9e-21
 Identities = 48/108 (44%), Positives = 57/108 (52%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKP--KPRP 572
             L+  V  G+L++ KG     SFKLP    AA        AK  K AA + KP+   KP+ 
Sbjct:    88 LRGAVTKGELLQTKGKGASGSFKLP----AAAKKEKV--AKTPKKAAGEKKPQAAAKPKK 141

Query:   573 AAKAKDTKATKSKAPAKPK---PAAKPKAKAPAKAKPAAK---PKAXAAXKPKPA 719
             A + K + A K KA    K   P AK   K PA  KPAAK   PK  AA KPK A
Sbjct:   142 ALEKKKSIAKKPKAATATKVKKPVAK-STKKPAAVKPAAKKAAPKPKAAPKPKAA 195

 Score = 121 (42.6 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
 Identities = 43/111 (38%), Positives = 54/111 (48%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKKLVAAGKLVKV-KGSFKLPPTRPAAXXXXXXXPAKKK 527
             +V +   +AA  +  +A++ P K L     + K  K +      +P A       PA  K
Sbjct:   119 KVAKTPKKAAGEKKPQAAAKPKKALEKKKSIAKKPKAATATKVKKPVAKSTKK--PAAVK 176

Query:   528 KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAA--KPKAKAPAKAK-PAAK 683
              PAA K+ PKPK  P  KA    ATK K   KPK  A  KP  K P  AK PAAK
Sbjct:   177 -PAAKKAAPKPKAAPKPKA----ATKPKKEVKPKKVAAKKPAEKKPEAAKKPAAK 226

 Score = 121 (42.6 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
 Identities = 47/111 (42%), Positives = 49/111 (44%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSK--PKPKPRPAAKAKDT 593
             KL AA K  KV    K P  + AA        AK KK    K     KPK   A K K  
Sbjct:   110 KLPAAAKKEKVA---KTP--KKAAGEKKPQAAAKPKKALEKKKSIAKKPKAATATKVKKP 164

Query:   594 KATKSKAPAKPKPAAK---------PKAKAPAKAKPAAKPKAXAAXKP---KPAXA 725
              A  +K PA  KPAAK         PK KA  K K   KPK  AA KP   KP  A
Sbjct:   165 VAKSTKKPAAVKPAAKKAAPKPKAAPKPKAATKPKKEVKPKKVAAKKPAEKKPEAA 220


 >gi|2842445|emb|CAA11813.1|  (AJ224072) histone 1 [Mytilus edulis]
            >gi|2842449|emb|CAA11815.1| (AJ224074) histone 1 [Mytilus edulis]
            >gi|2842453|emb|CAA11817.1| (AJ224076) histone 1 [Mytilus edulis]
            >gi|2842455|emb|CAA11818.1| (AJ224077) histone 1 [Mytilus edulis]
            >gi|2842457|emb|CAA11810.1| (AJ224069) histone 1 [Mytilus edulis]
            Length = 191

Frame  3 hits (HSPs):                         ____________________________
Frame  1 hits (HSPs):      _____________                                  
                        __________________________________________________
Database sequence:     |            |            |             |          | 191
                       0           50          100           150

  Plus Strand HSPs:

 Score = 148 (52.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 38/65 (58%), Positives = 38/65 (58%), Frame = +3

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKP---KPAAKPKAKAPAKAKPAAKPKA 692
             KKKPA AK   KPK     KAK T   K  A  KP   K AAKPKAK PA AK AAKPK 
Sbjct:   110 KKKPAKAKKAAKPKAAKPKKAKSTPKKKKPAAKKPAGEKKAAKPKAKKPA-AKKAAKPKK 168

Query:   693 XAAXKP 710
              AA  P
Sbjct:   169 PAAKSP 174

 Score = 136 (47.9 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 50/105 (47%), Positives = 58/105 (55%), Frame = +3

Query:   402 SSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAK 581
             +SL   K   A    ++ G  K+   +PA        P K  KP  AKS PK K +PAAK
Sbjct:    87 NSLKQSKGTGASGSFRI-GEAKVVKKKPAKAKKAAK-P-KAAKPKKAKSTPKKK-KPAAK 142

Query:   582 --AKDTKATKSKAPAKP--KPAAKPK---AKAPAKAKPAAKPKAXAAXKPK 713
               A + KA K KA  KP  K AAKPK   AK+PAK K AAKPKA    K K
Sbjct:   143 KPAGEKKAAKPKAK-KPAAKKAAKPKKPAAKSPAKKK-AAKPKAKKTPKKK 191

 Score = 126 (44.4 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 23/46 (50%), Positives = 31/46 (67%), Frame = +1

Query:   223 KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFI 360
             K PK K  ++P+ P  HP Y EM+  AI +LKE+ GSS+ AI K+I
Sbjct:    14 KSPKKKAAAKPKKPSAHPKYSEMIGKAIAALKERGGSSRQAILKYI 59

 Score = 115 (40.5 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
 Identities = 42/104 (40%), Positives = 51/104 (49%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G   + S  + EA  +  KK   A K  K K +    P + A        PA KK PA 
Sbjct:    93 KGTGASGSFRIGEAKVVK-KKPAKAKKAAKPKAA---KPKK-AKSTPKKKKPAAKK-PAG 146

Query:   540 AKSKPKPKPR-PAAK-AKDTKATKSKAPAKPKPAAKPKAKAPAKAK 671
              K   KPK + PAAK A   K   +K+PAK K AAKPKAK   K K
Sbjct:   147 EKKAAKPKAKKPAAKKAAKPKKPAAKSPAKKK-AAKPKAKKTPKKK 191

 Score = 42 (14.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 15/28 (53%), Positives = 15/28 (53%), Frame = +3

Query:   636 AKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             AK   K PAKAK AAKPKA        A
Sbjct:   106 AKVVKKKPAKAKKAAKPKA--------A 125


 >gi|2842459|emb|CAA11811.1|  (AJ224070) histone 1 [Mytilus edulis]
            Length = 191

Frame  3 hits (HSPs):                         ____________________________
Frame  1 hits (HSPs):      _____________                                  
                        __________________________________________________
Database sequence:     |            |            |             |          | 191
                       0           50          100           150

  Plus Strand HSPs:

 Score = 148 (52.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 38/65 (58%), Positives = 38/65 (58%), Frame = +3

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKP---KPAAKPKAKAPAKAKPAAKPKA 692
             KKKPA AK   KPK     KAK T   K  A  KP   K AAKPKAK PA AK AAKPK 
Sbjct:   110 KKKPAKAKKAAKPKAAKPKKAKSTPKRKKPAAKKPAGEKKAAKPKAKKPA-AKKAAKPKK 168

Query:   693 XAAXKP 710
              AA  P
Sbjct:   169 PAAKSP 174

 Score = 135 (47.5 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
 Identities = 50/105 (47%), Positives = 58/105 (55%), Frame = +3

Query:   402 SSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAK 581
             +SL   K   A    ++ G  K+   +PA        P K  KP  AKS PK K +PAAK
Sbjct:    87 NSLKQSKGTGASGSFRI-GEAKVVKKKPAKAKKAAK-P-KAAKPKKAKSTPKRK-KPAAK 142

Query:   582 --AKDTKATKSKAPAKP--KPAAKPK---AKAPAKAKPAAKPKAXAAXKPK 713
               A + KA K KA  KP  K AAKPK   AK+PAK K AAKPKA    K K
Sbjct:   143 KPAGEKKAAKPKAK-KPAAKKAAKPKKPAAKSPAKKK-AAKPKAKKTPKKK 191

 Score = 126 (44.4 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 23/46 (50%), Positives = 31/46 (67%), Frame = +1

Query:   223 KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFI 360
             K PK K  ++P+ P  HP Y EM+  AI +LKE+ GSS+ AI K+I
Sbjct:    14 KSPKKKAAAKPKKPSAHPKYSEMIGKAIAALKERGGSSRQAILKYI 59

 Score = 115 (40.5 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
 Identities = 42/104 (40%), Positives = 51/104 (49%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G   + S  + EA  +  KK   A K  K K +    P + A        PA KK PA 
Sbjct:    93 KGTGASGSFRIGEAKVVK-KKPAKAKKAAKPKAA---KPKK-AKSTPKRKKPAAKK-PAG 146

Query:   540 AKSKPKPKPR-PAAK-AKDTKATKSKAPAKPKPAAKPKAKAPAKAK 671
              K   KPK + PAAK A   K   +K+PAK K AAKPKAK   K K
Sbjct:   147 EKKAAKPKAKKPAAKKAAKPKKPAAKSPAKKK-AAKPKAKKTPKKK 191

 Score = 42 (14.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 15/28 (53%), Positives = 15/28 (53%), Frame = +3

Query:   636 AKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             AK   K PAKAK AAKPKA        A
Sbjct:   106 AKVVKKKPAKAKKAAKPKA--------A 125


 >gi|2842451|emb|CAA11816.1|  (AJ224075) histone 1 [Mytilus edulis]
            Length = 191

Frame  3 hits (HSPs):                    _________________________________
Frame  1 hits (HSPs):      _____________                                  
                        __________________________________________________
Database sequence:     |            |            |             |          | 191
                       0           50          100           150

  Plus Strand HSPs:

 Score = 148 (52.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 38/65 (58%), Positives = 38/65 (58%), Frame = +3

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKP---KPAAKPKAKAPAKAKPAAKPKA 692
             KKKPA AK   KPK     KAK T   K  A  KP   K AAKPKAK PA AK AAKPK 
Sbjct:   110 KKKPAKAKKAAKPKAAKPKKAKSTPKKKKPAAKKPAGEKKAAKPKAKKPA-AKKAAKPKK 168

Query:   693 XAAXKP 710
              AA  P
Sbjct:   169 PAAKSP 174

 Score = 132 (46.5 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
 Identities = 51/124 (41%), Positives = 64/124 (51%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKK-LVAAGKLVKVKGSFKLPPT----RPAAXXXXXXXPAKKKK 530
             +A++ +  L+ A    +K   +   K     GSF++       +  A       P K  K
Sbjct:    68 DAKSVNAHLKLALRAGVKNNSLKQSKGTGASGSFRIGEANVVKKKPAKAKKAAKP-KAAK 126

Query:   531 PAAAKSKPKPKPRPAAK--AKDTKATKSKAPAKP--KPAAKPK---AKAPAKAKPAAKPK 689
             P  AKS PK K +PAAK  A + KA K KA  KP  K AAKPK   AK+PAK K AAKPK
Sbjct:   127 PKKAKSTPKKK-KPAAKKPAGEKKAAKPKAK-KPAAKKAAKPKKPAAKSPAKKK-AAKPK 183

Query:   690 AXAAXKPK 713
             A    K K
Sbjct:   184 AKKTPKKK 191

 Score = 126 (44.4 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
 Identities = 23/46 (50%), Positives = 31/46 (67%), Frame = +1

Query:   223 KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFI 360
             K PK K  ++P+ P  HP Y EM+  AI +LKE+ GSS+ AI K+I
Sbjct:    14 KSPKKKAAAKPKKPSAHPKYSEMIGKAIAALKERGGSSRQAILKYI 59

 Score = 116 (40.8 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
 Identities = 42/104 (40%), Positives = 52/104 (50%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G   + S  + EA+ +  KK   A K  K K +    P + A        PA KK PA 
Sbjct:    93 KGTGASGSFRIGEANVVK-KKPAKAKKAAKPKAA---KPKK-AKSTPKKKKPAAKK-PAG 146

Query:   540 AKSKPKPKPR-PAAK-AKDTKATKSKAPAKPKPAAKPKAKAPAKAK 671
              K   KPK + PAAK A   K   +K+PAK K AAKPKAK   K K
Sbjct:   147 EKKAAKPKAKKPAAKKAAKPKKPAAKSPAKKK-AAKPKAKKTPKKK 191

 Score = 40 (14.1 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 18/45 (40%), Positives = 21/45 (46%), Frame = +3

Query:   585 KDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             K +K T +    +   A   K K PAKAK AAKPKA        A
Sbjct:    90 KQSKGTGASGSFRIGEANVVKKK-PAKAKKAAKPKA--------A 125


 >gi|2232176|gb|AAC14376.1|  (AF002680) histone H1-II-2 [Chironomus thummi
            thummi]
            Length = 227

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):   ____________________                              
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 151 (53.2 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
 Identities = 37/87 (42%), Positives = 51/87 (58%), Frame = +1

Query:   163 ADPPLEEKEETK--PEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSS 336
             +DP +E    T     AKAKK K+PK  K ++P+ P THP   EMV +A+ +LKE+ GSS
Sbjct:     2 SDPAIEVAPTTPVASPAKAKKEKKPKADKPTKPKAPKTHPPVSEMVVNAVKTLKERGGSS 61

Query:   337 QYAIAKFIEEKHK----QLPPNFKKLL 405
               A  KF+  ++K    +L P  KK L
Sbjct:    62 LQANKKFLVAQYKVDTDKLAPFIKKFL 88

 Score = 142 (50.0 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
 Identities = 47/100 (47%), Positives = 52/100 (52%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK--KKPAAAK---SKPKPKPRPAA 578
             +KK+ A  K   VK +    P   AA       P  K  KKPAAAK    K  PKP+ A 
Sbjct:   128 VKKVTAKPKKAGVKKTIAKKPK--AATATKIKKPVAKTTKKPAAAKPVVKKVAPKPKAAP 185

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPA-KAKPAA--KPKAXAA 701
             KAK   A K K   KPK AA PKAK PA + KP A  KP A  A
Sbjct:   186 KAK--VAPKPKVATKPKKAASPKAKKPAAEKKPKAVKKPAAKKA 227

 Score = 141 (49.6 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
 Identities = 47/99 (47%), Positives = 51/99 (51%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK--KKPAAAK---SKPKPKPRPAA 578
             +KK+ A  K   VK +    P   AA       P  K  KKPAAAK    K  PKP+ A 
Sbjct:   128 VKKVTAKPKKAGVKKTIAKKPK--AATATKIKKPVAKTTKKPAAAKPVVKKVAPKPKAAP 185

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             KAK   A K K   KPK AA PKAK PA  K   KPKA    KP
Sbjct:   186 KAK--VAPKPKVATKPKKAASPKAKKPAAEK---KPKA--VKKP 222

 Score = 134 (47.2 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
 Identities = 48/117 (41%), Positives = 53/117 (45%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKP----K 557
             LK  V  G+L++ KG     SFKLP              A KK   KP  A  K     K
Sbjct:    88 LKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKGVKPKVAAVKKVTAKPKKAGVKKTIAKK 147

Query:   558 PKPRPAAKAKDTKATKSKAPAKPKPAAK---PKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
             PK   A K K   A  +K PA  KP  K   PK KA  KAK A KPK   A KPK A +
Sbjct:   148 PKAATATKIKKPVAKTTKKPAAAKPVVKKVAPKPKAAPKAKVAPKPKV--ATKPKKAAS 204

 Score = 117 (41.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 44/105 (41%), Positives = 45/105 (42%), Frame = +3

Query:   456 GSFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKP----KPKPRPAAKAKD--TKATKS 608
             GSFKLP              A KK   KP  A  K     KPK   A K K    K TK 
Sbjct:   107 GSFKLPAAAKKEKGVKPKVAAVKKVTAKPKKAGVKKTIAKKPKAATATKIKKPVAKTTKK 166

Query:   609 KAPAKP-------KPAAKPKAKAPAKAKPAAKPKAXAAXKPK-PA 719
              A AKP       KP A PKAK   K K A KPK  A+ K K PA
Sbjct:   167 PAAAKPVVKKVAPKPKAAPKAKVAPKPKVATKPKKAASPKAKKPA 211

 Score = 112 (39.4 bits), Expect = 8.1e-18, Sum P(2) = 8.1e-18
 Identities = 36/79 (45%), Positives = 38/79 (48%), Frame = +3

Query:   516 AKKKKPAAAKS-KPKPKPRPAAKAKD--TKATKSKAPAKP-------KPAAKPKAKAPAK 665
             AK KK    K+   KPK   A K K    K TK  A AKP       KP A PKAK   K
Sbjct:   133 AKPKKAGVKKTIAKKPKAATATKIKKPVAKTTKKPAAAKPVVKKVAPKPKAAPKAKVAPK 192

Query:   666 AKPAAKPKAXAAXKPK-PA 719
              K A KPK  A+ K K PA
Sbjct:   193 PKVATKPKKAASPKAKKPA 211


 >gi|454119|gb|AAC14387.1|  (L28732) histone H1-II-1 [Chironomus thummi]
            Length = 234

Frame  3 hits (HSPs):                     ________________________________
Frame  1 hits (HSPs):   ___________________                               
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 234
                       0         50        100       150        200

  Plus Strand HSPs:

 Score = 161 (56.7 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
 Identities = 39/87 (44%), Positives = 52/87 (59%), Frame = +1

Query:   163 ADPPLEEKEETK--PEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSS 336
             +DP +E    T     AKAKK K+PK  KV +P+ P THP   EMV +A+ +LKE+ GSS
Sbjct:     2 SDPAVEVAPTTPVASPAKAKKEKKPKTDKVKKPKAPRTHPPVSEMVVNAVKTLKERGGSS 61

Query:   337 QYAIAKFIEEKHK----QLPPNFKKLL 405
               AI KF+  ++K    +L P  KK L
Sbjct:    62 LQAIKKFLVAQYKVDTDKLAPFIKKFL 88

 Score = 121 (42.6 bits), Expect = 7.9e-21, Sum P(2) = 7.9e-21
 Identities = 38/102 (37%), Positives = 49/102 (48%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLP-PTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             A+ + + A    +KK +A  K  K   + K+  P            P  KK  +  K+ P
Sbjct:   135 AAAKPKNAGEKKVKKTIA--KKPKAAAATKIKKPIAKTTKKTVAAKPVVKKVASKPKASP 192

Query:   555 KPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
             KPK  P  K  D K  K+ AP   KPAA+ K KA AK KPAAK
Sbjct:   193 KPKAAPKPKVAD-KPKKAVAPKAKKPAAEKKPKA-AK-KPAAK 232

 Score = 116 (40.8 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
 Identities = 41/100 (41%), Positives = 46/100 (46%), Frame = +3

Query:   417 KKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAK--AKD 590
             KK   A    K  G  K+  T   A         K KKP A  +K     +P  K  A  
Sbjct:   130 KKPKKAAAKPKNAGEKKVKKT--IAKKPKAAAATKIKKPIAKTTKKTVAAKPVVKKVASK 187

Query:   591 TKAT-KSKAPAKPKPAAKPK-AKAPAKAKPAAKPKAXAAXKP 710
              KA+ K KA  KPK A KPK A AP   KPAA+ K  AA KP
Sbjct:   188 PKASPKPKAAPKPKVADKPKKAVAPKAKKPAAEKKPKAAKKP 229

 Score = 113 (39.8 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
 Identities = 42/105 (40%), Positives = 44/105 (41%), Frame = +3

Query:   456 GSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKP------KPRPAAKAKDTKATKSKAP 617
             GSFKLP              A +KKP  A +KPK       K   A K K   ATK K P
Sbjct:   107 GSFKLPVATKKEKVVKPKKVAAEKKPKKAAAKPKNAGEKKVKKTIAKKPKAAAATKIKKP 166

Query:   618 -AKP-------KPAAKPKAKAP-AKAKPAAKPKAXAAXKPKPAXA 725
              AK        KP  K  A  P A  KP A PK   A KPK A A
Sbjct:   167 IAKTTKKTVAAKPVVKKVASKPKASPKPKAAPKPKVADKPKKAVA 211

 Score = 113 (39.8 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
 Identities = 43/120 (35%), Positives = 54/120 (45%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRP--AAXXXXXXXPAKKKKP 533
             +G+  + S +L  A+    K+ V   K V  +   K    +P  A         AKK K 
Sbjct:   101 KGKGASGSFKLPVATK---KEKVVKPKKVAAEKKPKKAAAKPKNAGEKKVKKTIAKKPKA 157

Query:   534 AAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
             AAA    KP  +   K    K    K  +KPK + KPKA AP K K A KPK   A K K
Sbjct:   158 AAATKIKKPIAKTTKKTVAAKPVVKKVASKPKASPKPKA-AP-KPKVADKPKKAVAPKAK 215

Query:   714 -PA 719
              PA
Sbjct:   216 KPA 218

 Score = 112 (39.4 bits), Expect = 6.9e-20, Sum P(2) = 6.9e-20
 Identities = 45/126 (35%), Positives = 54/126 (42%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRP--AAXXXXXXXPAKKKKP 533
             +G+  + S +L  A+    K+ V   K V  +   K    +P  A         AKK K 
Sbjct:   101 KGKGASGSFKLPVATK---KEKVVKPKKVAAEKKPKKAAAKPKNAGEKKVKKTIAKKPKA 157

Query:   534 AAAKSKPKPKPRPAAK---AKDT-KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKA--- 692
             AAA    KP  +   K   AK   K   SK  A PKP A PK K   K K A  PKA   
Sbjct:   158 AAATKIKKPIAKTTKKTVAAKPVVKKVASKPKASPKPKAAPKPKVADKPKKAVAPKAKKP 217

Query:   693 XAAXKPKPA 719
              A  KPK A
Sbjct:   218 AAEKKPKAA 226

 Score = 111 (39.1 bits), Expect = 8.7e-20, Sum P(2) = 8.7e-20
 Identities = 42/102 (41%), Positives = 47/102 (46%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA 578
             LK  V  G+L++ KG     SFKLP              A +KKP  A +KPK       
Sbjct:    88 LKSAVEKGQLLQTKGKGASGSFKLPVATKKEKVVKPKKVAAEKKPKKAAAKPKNAGEK-- 145

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAX-AAXKPK 713
             K K T A K KA A  K   KP AK   K   AAKP     A KPK
Sbjct:   146 KVKKTIAKKPKAAAATK-IKKPIAKTTKKTV-AAKPVVKKVASKPK 189

 Score = 105 (37.0 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
 Identities = 35/98 (35%), Positives = 46/98 (46%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLP-PTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             A+ + + A    +KK +A  K  K   + K+  P            P  KK  +  K+ P
Sbjct:   135 AAAKPKNAGEKKVKKTIA--KKPKAAAATKIKKPIAKTTKKTVAAKPVVKKVASKPKASP 192

Query:   555 KPK--PRP--AAKAKDTKATKSKAPA---KPKPAAKPKAK 653
             KPK  P+P  A K K   A K+K PA   KPK A KP AK
Sbjct:   193 KPKAAPKPKVADKPKKAVAPKAKKPAAEKKPKAAKKPAAK 232

 Score = 86 (30.3 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
 Identities = 28/67 (41%), Positives = 31/67 (46%), Frame = +3

Query:   525 KKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAX 704
             K P A K +   KP+  A  K  K    KA AKPK A + K K       A KPKA AA 
Sbjct:   110 KLPVATKKEKVVKPKKVAAEKKPK----KAAAKPKNAGEKKVKKTI----AKKPKAAAAT 161

Query:   705 KPKPAXA 725
             K K   A
Sbjct:   162 KIKKPIA 168

 Score = 82 (28.9 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
 Identities = 30/75 (40%), Positives = 38/75 (50%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVK-VKGSFKLPPTRPAAXXXXXXXPAKK------KKP 533
             AA+T++++  +   KK VAA  +VK V    K  P   AA         KK      KKP
Sbjct:   158 AAATKIKKPIAKTTKKTVAAKPVVKKVASKPKASPKPKAAPKPKVADKPKKAVAPKAKKP 217

Query:   534 AAAKSKPKPKPRPAAK 581
             AA K KPK   +PAAK
Sbjct:   218 AAEK-KPKAAKKPAAK 232

 Score = 51 (18.0 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 17/43 (39%), Positives = 18/43 (41%), Frame = +3

Query:   591 TKATKSKAPAK-PKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             TK   +    K P    K K   P K     KPK  AA KPK A
Sbjct:   100 TKGKGASGSFKLPVATKKEKVVKPKKVAAEKKPKKAAA-KPKNA 142


 >gi|535594|gb|AAC14383.1|  (L28728) histone H1-II-1 [Chironomus thummi]
            Length = 234

Frame  3 hits (HSPs):                     ________________________________
Frame  1 hits (HSPs):   ___________________                               
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 234
                       0         50        100       150        200

  Plus Strand HSPs:

 Score = 156 (54.9 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
 Identities = 38/87 (43%), Positives = 51/87 (58%), Frame = +1

Query:   163 ADPPLEEKEETK--PEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSS 336
             +DP +E    T     AKAKK K+PK  K  +P+ P THP   EMV +A+ +LKE+ GSS
Sbjct:     2 SDPAVEVARTTPVASPAKAKKEKKPKTDKPKKPKAPRTHPPVSEMVVNAVKTLKERGGSS 61

Query:   337 QYAIAKFIEEKHK----QLPPNFKKLL 405
               AI KF+  ++K    +L P  KK L
Sbjct:    62 LQAIKKFLVAQYKVDTDKLAPFIKKFL 88

 Score = 133 (46.8 bits), Expect = 8.2e-21, Sum P(2) = 8.2e-21
 Identities = 46/122 (37%), Positives = 55/122 (45%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRP--AAXXXXXXXPAKKKKP 533
             +G+  + S +L  A+    K+ V  GK V  +   K    +P  A         AKK K 
Sbjct:   101 KGKGASGSFKLPVAAK---KEKVVKGKKVAAEKKPKKAAAKPKNAGEKKVKKTIAKKPKA 157

Query:   534 AAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
             AAA    KP  +   K    K    KA  KPK A KPKA AP K K AAKPK   A K K
Sbjct:   158 AAATKIKKPVAKTTKKTVTAKPVAKKAAPKPKVAPKPKA-AP-KPKVAAKPKKAVAPKAK 215

Query:   714 PAXA 725
                A
Sbjct:   216 KPVA 219

 Score = 129 (45.4 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
 Identities = 46/116 (39%), Positives = 56/116 (48%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK- 527
             +V +G+  AA  + ++A++ P     A  K VK K   K P    A           KK 
Sbjct:   119 KVVKGKKVAAEKKPKKAAAKPKN---AGEKKVK-KTIAKKPKAAAATKIKKPVAKTTKKT 174

Query:   528 ---KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAP-AKAKPAAKPKAX 695
                KP A K+ PKPK  P  KA    A K K  AKPK A  PKAK P A+ KP A  K  
Sbjct:   175 VTAKPVAKKAAPKPKVAPKPKA----APKPKVAAKPKKAVAPKAKKPVAEKKPKAAKKPA 230

Query:   696 A 698
             A
Sbjct:   231 A 231

 Score = 128 (45.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
 Identities = 48/120 (40%), Positives = 57/120 (47%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK- 527
             +V +G+  AA  + ++A++ P     A  K VK K   K P    A           KK 
Sbjct:   119 KVVKGKKVAAEKKPKKAAAKPKN---AGEKKVK-KTIAKKPKAAAATKIKKPVAKTTKKT 174

Query:   528 ---KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXA 698
                KP A K+ PKPK  P  KA    A K K  AKPK A  PKAK P   K   KPKA  
Sbjct:   175 VTAKPVAKKAAPKPKVAPKPKA----APKPKVAAKPKKAVAPKAKKPVAEK---KPKA-- 225

Query:   699 AXKP 710
             A KP
Sbjct:   226 AKKP 229

 Score = 118 (41.5 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
 Identities = 45/104 (43%), Positives = 50/104 (48%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA 578
             LK  V  G+L++ KG     SFKLP              A +KKP  A +KPK       
Sbjct:    88 LKSAVEKGQLLQTKGKGASGSFKLPVAAKKEKVVKGKKVAAEKKPKKAAAKPKNAGEK-- 145

Query:   579 KAKDTKATKSKAPAKPKPAAKPKAKAPAK---AKPAAKPKAXAAXKPKPA 719
             K K T A K KA A  K   KP AK   K   AKP AK    AA KPK A
Sbjct:   146 KVKKTIAKKPKAAAATK-IKKPVAKTTKKTVTAKPVAKK---AAPKPKVA 191

 Score = 108 (38.0 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
 Identities = 33/98 (33%), Positives = 41/98 (41%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKP---AAAKS 548
             A+ + + A    +KK +A           K P  +           AKK  P    A K 
Sbjct:   135 AAAKPKNAGEKKVKKTIAKKPKAAAATKIKKPVAKTTKKTVTAKPVAKKAAPKPKVAPKP 194

Query:   549 KPKPKPRPAAKAKDTKATKSKAPA---KPKPAAKPKAK 653
             K  PKP+ AAK K   A K+K P    KPK A KP AK
Sbjct:   195 KAAPKPKVAAKPKKAVAPKAKKPVAEKKPKAAKKPAAK 232

 Score = 68 (23.9 bits), Expect = 4.8e-14, Sum P(2) = 4.8e-14
 Identities = 24/68 (35%), Positives = 30/68 (44%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             A T  +  ++ P+ K  A    V  K     P  + AA       P K KKP A K KPK
Sbjct:   168 AKTTKKTVTAKPVAKKAAPKPKVAPKPK-AAPKPKVAAKPKKAVAP-KAKKPVAEK-KPK 224

Query:   558 PKPRPAAK 581
                +PAAK
Sbjct:   225 AAKKPAAK 232


 >gi|6474950|dbj|BAA87331.1|  (AB012694) variant of histone H1 [Lilium
            longiflorum]
            Length = 231

Frame  3 hits (HSPs):                       ______________________________
Frame  1 hits (HSPs):   ______________________________________            
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 231
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 254 (89.4 bits), Expect = 9.0e-21, P = 9.0e-21
 Identities = 76/189 (40%), Positives = 101/189 (53%), Frame = +1

Query:   109 MATEEPTVAVE-PAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYE 285
             MAT   TVA+E PA  P + DPP       KP AKAKK K PK KK S  + P  HP+Y 
Sbjct:     1 MAT---TVAIETPAFTPVAVDPPA-----AKP-AKAKKAKVPKEKKASVAK-PALHPTYL 50

Query:   286 EMVKDAITSLKEKTGSSQYAIAKFIEEKHK-QLPPNFKKLLLYH*RSSSPPENSSKSKAR 462
             EM+ +AI SLKE+TGSSQ AI+KF+E KHK  LP NFKKLLL   R  +     +K K  
Sbjct:    51 EMISEAIASLKERTGSSQIAISKFVENKHKAHLPANFKKLLLVQLRKLTAAGKLTKVK-- 108

Query:   463 SSSHLPDLLXXXXXXXXRQRRKSPQLPSPSLSLSPGPLRKPRILRQLNRRHQLSPS-QLL 639
              +S+             +   KS  +  P  + +     KP+      ++  + P  +  
Sbjct:   109 -NSYKISAKPTTATKPKKTSAKSTTVAKPKSAAA-----KPKSTAAKVKKAAVKPKPKSA 162

Query:   640 SLKPKLQPR-PNP 675
             ++KPK +P  P P
Sbjct:   163 AVKPKAEPAAPKP 175

 Score = 171 (60.2 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 53/102 (51%), Positives = 60/102 (58%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA-KAKD 590
             L+KL AAGKL KVK S+K+   +P          A K K  +AKS    KP+ AA K K 
Sbjct:    95 LRKLTAAGKLTKVKNSYKIS-AKPTT--------ATKPKKTSAKSTTVAKPKSAAAKPKS 145

Query:   591 TKATKSKAPAKPKP---AAKPKAKAPAKAKPAA--KPKAXAAXKPKPA 719
             T A   KA  KPKP   A KPKA+ PA  KP A  KPKA A  KPK A
Sbjct:   146 TAAKVKKAAVKPKPKSAAVKPKAE-PAAPKPKAVSKPKAVAP-KPKTA 191

 Score = 160 (56.3 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 52/117 (44%), Positives = 61/117 (52%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKL---P-----PTRPAAXXXXXXXP---AKKKKPAAAKSKP-- 554
             L+KL AAGKL KVK S+K+   P     P + +A       P   A K K  AAK K   
Sbjct:    95 LRKLTAAGKLTKVKNSYKISAKPTTATKPKKTSAKSTTVAKPKSAAAKPKSTAAKVKKAA 154

Query:   555 -KPKPRPAA-KAK-DTKATKSKAPAKPKPAA-KPKAKAPAK-AKPAAKPKAXAAXKP 710
              KPKP+ AA K K +  A K KA +KPK  A KPK   PAK AK +AKP       P
Sbjct:   155 VKPKPKSAAVKPKAEPAAPKPKAVSKPKAVAPKPKTAGPAKKAKTSAKPSPSKKAAP 211

 Score = 119 (41.9 bits), Expect = 0.00026, P = 0.00026
 Identities = 44/107 (41%), Positives = 53/107 (49%), Frame = +3

Query:   444 VKVKGSFKLPPTRPAAXXXXXXXP---AKKKKPAAAKSKP---KPKPRPAA-KAK-DTKA 599
             +  K +    P + +A       P   A K K  AAK K    KPKP+ AA K K +  A
Sbjct:   113 ISAKPTTATKPKKTSAKSTTVAKPKSAAAKPKSTAAKVKKAAVKPKPKSAAVKPKAEPAA 172

Query:   600 TKSKAPAKPKPAA-KPKAKAPAK-AKPAAKP----KAX--AAXKPKP 716
              K KA +KPK  A KPK   PAK AK +AKP    KA   A+ K KP
Sbjct:   173 PKPKAVSKPKAVAPKPKTAGPAKKAKTSAKPSPSKKAAPVASKKAKP 219

 Score = 108 (38.0 bits), Expect = 0.0056, P = 0.0056
 Identities = 42/116 (36%), Positives = 51/116 (43%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAK 545
             +  A ST + +  S   K    A K VK K + K  P   +A       PA  K  A +K
Sbjct:   125 KTSAKSTTVAKPKSAAAKPKSTAAK-VK-KAAVK--PKPKSAAVKPKAEPAAPKPKAVSK 180

Query:   546 SKP-KPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
              K   PKP+ A  AK     K+K  AKP P+ K    A  KAKP  K  A A  K K
Sbjct:   181 PKAVAPKPKTAGPAK-----KAKTSAKPSPSKKAAPVASKKAKPVKK--ATAPKKAK 230

 Score = 98 (34.5 bits), Expect = 0.087, P = 0.083
 Identities = 44/106 (41%), Positives = 52/106 (49%), Frame = +3

Query:   366 EAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAK 545
             +  A ST + +  S   K    A K VK K + K  P   +A       PA  K  A +K
Sbjct:   125 KTSAKSTTVAKPKSAAAKPKSTAAK-VK-KAAVK--PKPKSAAVKPKAEPAAPKPKAVSK 180

Query:   546 SK---PKPKPR-PAAKAKDT-KATKSK--APAKPKPAAKP--KAKAPAKAK 671
              K   PKPK   PA KAK + K + SK  AP   K A KP  KA AP KAK
Sbjct:   181 PKAVAPKPKTAGPAKKAKTSAKPSPSKKAAPVASKKA-KPVKKATAPKKAK 230


 >gi|2118977|pir||S59589  histone H1 - Chlamydomonas reinhardtii
            Length = 231

Frame  3 hits (HSPs):                  ___________________________________
Frame  1 hits (HSPs):     ______________                                  
Annotated Domains:       _________________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 231
                       0         50        100        150        200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       10..102
   DOMO                 DM03514:                                 104..231
__________________


  Plus Strand HSPs:

 Score = 163 (57.4 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
 Identities = 53/117 (45%), Positives = 61/117 (52%), Frame = +3

Query:   405 SLPLKKLVAAGKLVKVKGSFKLPP-----TRPAAXXXXXXXPAKK---KKPAAAKSKPKP 560
             SL LK  V +GKL+KVK SFKL        + AA       P K+   KK  A K + + 
Sbjct:    74 SLTLKTFVKSGKLIKVKNSFKLSEEVKKAAKKAATPKKAAAPKKEGAVKKTKAPKKEGEK 133

Query:   561 KPRPAAKA--KDTKATKSKAPAKP-KPAAKPKAKAPAKA---KPAAKPKAXAAXKPKPA 719
             KP+ A KA  K  K  + K  AKP K   KPKA  PAK    K AAKPKA    KPK A
Sbjct:   134 KPKSAKKAEKKPKKEGEKKKAAKPAKAEKKPKAAKPAKKTTKKAAAKPKAEK--KPKAA 190

 Score = 151 (53.2 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 53/120 (44%), Positives = 64/120 (53%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKK-LVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK 527
             EV +  A+ A+T  + A+  P K+  V   K  K +G  K P +   A         KKK
Sbjct:    98 EVKKA-AKKAATPKKAAA--PKKEGAVKKTKAPKKEGE-KKPKSAKKAEKKPKKEGEKKK 153

Query:   528 --KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-KAPAKAKPAAKPKAXA 698
               KPA A+ KPK   +PA K     A K KA  KPK AAKPKA K P  AKP A+ KA A
Sbjct:   154 AAKPAKAEKKPKAA-KPAKKTTKKAAAKPKAEKKPKAAAKPKAEKKPKAAKPKAEKKAKA 212

Query:   699 AXKP 710
             A KP
Sbjct:   213 A-KP 215

 Score = 145 (51.0 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 54/131 (41%), Positives = 66/131 (50%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKK-LVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK 527
             EV +  A+ A+T  + A+  P K+  V   K  K +G  K P +   A         KKK
Sbjct:    98 EVKKA-AKKAATPKKAAA--PKKEGAVKKTKAPKKEGE-KKPKSAKKAEKKPKKEGEKKK 153

Query:   528 --KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-KAPAKAKP-------A 677
               KPA A+ KPK   +PA K     A K KA  KPK AAKPKA K P  AKP       A
Sbjct:   154 AAKPAKAEKKPKAA-KPAKKTTKKAAAKPKAEKKPKAAAKPKAEKKPKAAKPKAEKKAKA 212

Query:   678 AKPKAXAAXKPKPAXA 725
             AKP A  + + KP  A
Sbjct:   213 AKPAAKKSAEKKPKAA 228

 Score = 143 (50.3 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 56/131 (42%), Positives = 66/131 (50%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKK-LVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK 527
             EV +  A+ A+T  + A+  P K+  V   K  K +G  K P +   A         KKK
Sbjct:    98 EVKKA-AKKAATPKKAAA--PKKEGAVKKTKAPKKEGE-KKPKSAKKAEKKPKKEGEKKK 153

Query:   528 --KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-KAPAKAKP-------A 677
               KPA A+ KPK   +PA K     A K KA  KPK AAKPKA K P  AKP       A
Sbjct:   154 AAKPAKAEKKPKAA-KPAKKTTKKAAAKPKAEKKPKAAAKPKAEKKPKAAKPKAEKKAKA 212

Query:   678 AKP--KAXAAXKPKPA 719
             AKP  K  A  KPK A
Sbjct:   213 AKPAAKKSAEKKPKAA 228

 Score = 129 (45.4 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
 Identities = 46/113 (40%), Positives = 53/113 (46%), Frame = +3

Query:   363 GEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXX--XXXPAKKK-KP 533
             G  +      +E    P K    A K  K +G  K    +PA          PAKK  K 
Sbjct:   119 GAVKKTKAPKKEGEKKP-KSAKKAEKKPKKEGE-KKKAAKPAKAEKKPKAAKPAKKTTKK 176

Query:   534 AAAKSKPKPKPRPAAKAK---DTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKA 692
             AAAK K + KP+ AAK K     KA K KA  K K AAKP AK  A+ KP A  KA
Sbjct:   177 AAAKPKAEKKPKAAAKPKAEKKPKAAKPKAEKKAK-AAKPAAKKSAEKKPKAAKKA 231

 Score = 113 (39.8 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
 Identities = 27/63 (42%), Positives = 38/63 (60%), Frame = +1

Query:   223 KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKH-KQL-PPNFK 396
             K P  KK ++ +   THP Y  MV +AI +LKE+ GSS  AI K+I+ K+ K +   N+ 
Sbjct:    11 KSPAAKKAAKAKKVATHPPYITMVSEAILALKERDGSSIPAIKKWIDAKYGKDIHDKNYP 70

Query:   397 KLL 405
             K L
Sbjct:    71 KTL 73

 Score = 100 (35.2 bits), Expect = 0.050, P = 0.049
 Identities = 38/111 (34%), Positives = 51/111 (45%), Frame = +3

Query:   339 IRDCEVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPT-RPAAXXX--XXX 509
             ++  +  + E +      ++A   P KK     K  K   + K P   +PA         
Sbjct:   121 VKKTKAPKKEGEKKPKSAKKAEKKP-KKEGEKKKAAKPAKAEKKPKAAKPAKKTTKKAAA 179

Query:   510 XPAKKKKP-AAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKA 668
              P  +KKP AAAK K + KP+ AAK K  K  K+  PA  K A K K KA  KA
Sbjct:   180 KPKAEKKPKAAAKPKAEKKPK-AAKPKAEKKAKAAKPAAKKSAEK-KPKAAKKA 231


 >gi|571480|gb|AAA98452.1|  (U16726) histone H1 [Chlamydomonas reinhardtii]
            Length = 232

Frame  3 hits (HSPs):                  ___________________________________
Frame  1 hits (HSPs):     ______________                                  
                        __________________________________________________
Database sequence:     |          |          |          |         |       | 232
                       0         50        100        150       200

  Plus Strand HSPs:

 Score = 163 (57.4 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
 Identities = 53/118 (44%), Positives = 61/118 (51%), Frame = +3

Query:   405 SLPLKKLVAAGKLVKVKGSFKLPP-----TRPAAXXXXXXXPAKK---KKPAAAKSKPKP 560
             SL LK  V +GKL+KVK SFKL        + AA       P K+   KK  A K + + 
Sbjct:    74 SLTLKTFVKSGKLIKVKNSFKLSEEVKKAAKKAATPKKAAAPKKEGAVKKTKAPKKEGEK 133

Query:   561 KPRPAAKA--KDTKATKSKAPAKP-KPAAKPKAKAPAKAKP----AAKPKAXAAXKPKPA 719
             KP+ A KA  K  K  + K  AKP K   KPKA  PAK  P    AAKPKA    KPK A
Sbjct:   134 KPKSAKKAEKKPKKEGEKKKAAKPAKAEKKPKAAKPAKKTPTKKAAAKPKAEK--KPKAA 191

 Score = 148 (52.1 bits), Expect = 4.1e-08, P = 4.1e-08
 Identities = 54/120 (45%), Positives = 65/120 (54%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKK-LVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK 527
             EV +  A+ A+T  + A+  P K+  V   K  K +G  K P +   A         KKK
Sbjct:    98 EVKKA-AKKAATPKKAAA--PKKEGAVKKTKAPKKEGE-KKPKSAKKAEKKPKKEGEKKK 153

Query:   528 --KPAAAKSKPKPKPRPAAKAKDTKAT-KSKAPAKPKPAAKPKA-KAPAKAKPAAKPKAX 695
               KPA A+ KPK   +PA K    KA  K KA  KPK AAKPKA K P  AKP A+ KA 
Sbjct:   154 AAKPAKAEKKPKAA-KPAKKTPTKKAAAKPKAEKKPKAAAKPKAEKKPKAAKPKAEKKAK 212

Query:   696 AAXKP 710
             AA KP
Sbjct:   213 AA-KP 216

 Score = 142 (50.0 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 55/132 (41%), Positives = 67/132 (50%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKK-LVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK 527
             EV +  A+ A+T  + A+  P K+  V   K  K +G  K P +   A         KKK
Sbjct:    98 EVKKA-AKKAATPKKAAA--PKKEGAVKKTKAPKKEGE-KKPKSAKKAEKKPKKEGEKKK 153

Query:   528 --KPAAAKSKPKPKPRPAAKAKDTKAT-KSKAPAKPKPAAKPKA-KAPAKAKP------- 674
               KPA A+ KPK   +PA K    KA  K KA  KPK AAKPKA K P  AKP       
Sbjct:   154 AAKPAKAEKKPKAA-KPAKKTPTKKAAAKPKAEKKPKAAAKPKAEKKPKAAKPKAEKKAK 212

Query:   675 AAKPKAXAAXKPKPAXA 725
             AAKP A  + + KP  A
Sbjct:   213 AAKPAAKKSAEKKPKAA 229

 Score = 135 (47.5 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 52/132 (39%), Positives = 64/132 (48%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK- 527
             EV +   +AA+ +  +A++   +  V   K  K +G  K    + A          KK  
Sbjct:    98 EVKKAAKKAATPK--KAAAPKKEGAVKKTKAPKKEGEKKPKSAKKAEKKPKKEGEKKKAA 155

Query:   528 KPAAAKSKPKPKPRPAAKAKDTKAT-KSKAPAKPKPAAKPKA-KAPAKAKP-------AA 680
             KPA A+ KPK   +PA K    KA  K KA  KPK AAKPKA K P  AKP       AA
Sbjct:   156 KPAKAEKKPKAA-KPAKKTPTKKAAAKPKAEKKPKAAAKPKAEKKPKAAKPKAEKKAKAA 214

Query:   681 KP--KAXAAXKPKPA 719
             KP  K  A  KPK A
Sbjct:   215 KPAAKKSAEKKPKAA 229

 Score = 127 (44.7 bits), Expect = 7.0e-14, Sum P(2) = 7.0e-14
 Identities = 46/114 (40%), Positives = 53/114 (46%), Frame = +3

Query:   363 GEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXX--XXXPAKKK--K 530
             G  +      +E    P K    A K  K +G  K    +PA          PAKK   K
Sbjct:   119 GAVKKTKAPKKEGEKKP-KSAKKAEKKPKKEGE-KKKAAKPAKAEKKPKAAKPAKKTPTK 176

Query:   531 PAAAKSKPKPKPRPAAKAK---DTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKA 692
              AAAK K + KP+ AAK K     KA K KA  K K AAKP AK  A+ KP A  KA
Sbjct:   177 KAAAKPKAEKKPKAAAKPKAEKKPKAAKPKAEKKAK-AAKPAAKKSAEKKPKAAKKA 232

 Score = 113 (39.8 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
 Identities = 27/63 (42%), Positives = 38/63 (60%), Frame = +1

Query:   223 KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKH-KQL-PPNFK 396
             K P  KK ++ +   THP Y  MV +AI +LKE+ GSS  AI K+I+ K+ K +   N+ 
Sbjct:    11 KSPAAKKAAKAKKVATHPPYITMVSEAILALKERDGSSIPAIKKWIDAKYGKDIHDKNYP 70

Query:   397 KLL 405
             K L
Sbjct:    71 KTL 73

 Score = 102 (35.9 bits), Expect = 8.3e-11, Sum P(2) = 8.3e-11
 Identities = 37/92 (40%), Positives = 43/92 (46%), Frame = +3

Query:   393 QEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKP-AAAKSKPKPKPR 569
             +E       K   A K  K     K  PT+ AA       P  +KKP AAAK K + KP+
Sbjct:   147 KEGEKKKAAKPAKAEKKPKAAKPAKKTPTKKAAAK-----PKAEKKPKAAAKPKAEKKPK 201

Query:   570 PAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKA 668
              AAK K  K  K+  PA  K A K K KA  KA
Sbjct:   202 -AAKPKAEKKAKAAKPAAKKSAEK-KPKAAKKA 232


 >gi|2232182|gb|AAB62239.1|  (AF002683) histone H1d [Chironomus tentans]
            Length = 233

Frame  3 hits (HSPs):                     ________________________________
Frame  1 hits (HSPs):      ________________                  ____________ 
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200

  Plus Strand HSPs:

 Score = 150 (52.8 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 34/71 (47%), Positives = 45/71 (63%), Frame = +1

Query:   205 AKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK--- 375
             AKAKK K+PK  K  +P+ P THP   EMV +A+ +LKE+ GSS  AI KF+  ++K   
Sbjct:    18 AKAKKEKKPKSDKPKKPKAPRTHPPVSEMVVNAVKTLKERGGSSLQAIKKFLVAQYKVDV 77

Query:   376 -QLPPNFKKLL 405
              +L P  KK L
Sbjct:    78 DKLAPFIKKFL 88

 Score = 142 (50.0 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 49/104 (47%), Positives = 61/104 (58%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAK--KK----KPA 536
             AA  + ++A++ P K    AG+  KVK +    P   AA        AK  KK    KPA
Sbjct:   128 AAEKKPKKAAAKPKK----AGEK-KVKKTIAKKPKAAAAAKKVKKPVAKTTKKPAAAKPA 182

Query:   537 AAKSKPKPK--PRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
             A K+ PKPK  P+P A  K+TK  K+ AP   KPAA+ K KA AK KPAAK
Sbjct:   183 AKKAAPKPKAAPKPKATKKETKPKKAAAPKAKKPAAEKKPKA-AK-KPAAK 231

 Score = 138 (48.6 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
 Identities = 44/102 (43%), Positives = 57/102 (55%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             A+ + ++A    +KK +A  K  K   + K    +P A       PA  K PAA K+ PK
Sbjct:   136 AAAKPKKAGEKKVKKTIA--KKPKAAAAAK-KVKKPVAKTTKK--PAAAK-PAAKKAAPK 189

Query:   558 PK--PRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
             PK  P+P A  K+TK  K+ AP   KPAA+ K KA AK KPAAK
Sbjct:   190 PKAAPKPKATKKETKPKKAAAPKAKKPAAEKKPKA-AK-KPAAK 231

 Score = 137 (48.2 bits), Expect = 4.7e-20, Sum P(2) = 4.7e-20
 Identities = 51/123 (41%), Positives = 57/123 (46%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLP-----------PTRPAAXXXXXXXPAKKKKPAAAK 545
             LK  V  G+L++ KG     SFKLP           PT+ AA        AK KK    K
Sbjct:    88 LKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKVVKKPTKTAAEKKPKKAAAKPKKAGEKK 147

Query:   546 SKPK--PKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPA-KAKPAAKPKAXAA-XKPK 713
              K     KP+ AA AK  K   +K   KP  AAKP AK  A K K A KPKA     KPK
Sbjct:   148 VKKTIAKKPKAAAAAKKVKKPVAKTTKKPA-AAKPAAKKAAPKPKAAPKPKATKKETKPK 206

Query:   714 PAXA 725
              A A
Sbjct:   207 KAAA 210

 Score = 134 (47.2 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
 Identities = 49/109 (44%), Positives = 59/109 (54%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK-KKPAAAK-S 548
             AA  + ++A++ P K    AG+  KVK +    P   AA        AK  KKPAAAK +
Sbjct:   128 AAEKKPKKAAAKPKK----AGEK-KVKKTIAKKPKAAAAAKKVKKPVAKTTKKPAAAKPA 182

Query:   549 KPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPA---KAKPAAKPKAXAA 701
               K  P+P A  K  KATK +   KPK AA PKAK PA   K K A KP A  A
Sbjct:   183 AKKAAPKPKAAPKP-KATKKET--KPKKAAAPKAKKPAAEKKPKAAKKPAAKKA 233

 Score = 134 (47.2 bits), Expect = 9.7e-20, Sum P(2) = 9.7e-20
 Identities = 50/112 (44%), Positives = 60/112 (53%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK-KKPAAAK-S 548
             AA  + ++A++ P K    AG+  KVK +    P   AA        AK  KKPAAAK +
Sbjct:   128 AAEKKPKKAAAKPKK----AGEK-KVKKTIAKKPKAAAAAKKVKKPVAKTTKKPAAAKPA 182

Query:   549 KPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
               K  P+P A  K  KATK +   KPK AA PKAK PA  K   KPKA  A KP
Sbjct:   183 AKKAAPKPKAAPKP-KATKKET--KPKKAAAPKAKKPAAEK---KPKA--AKKP 228

 Score = 129 (45.4 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
 Identities = 46/102 (45%), Positives = 49/102 (48%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK--PKPRPAAKAKDT 593
             KL AA K  KV       PT+ AA        AK KK    K K     KP+ AA AK  
Sbjct:   110 KLPAAAKKEKVVKK----PTKTAAEKKPKKAAAKPKKAGEKKVKKTIAKKPKAAAAAKKV 165

Query:   594 KATKSKAPAKPKPAAKPKAKAPA-KAKPAAKPKAXAA-XKPKPAXA 725
             K   +K   KP  AAKP AK  A K K A KPKA     KPK A A
Sbjct:   166 KKPVAKTTKKPA-AAKPAAKKAAPKPKAAPKPKATKKETKPKKAAA 210

 Score = 117 (41.2 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
 Identities = 35/73 (47%), Positives = 36/73 (49%), Frame = +3

Query:   516 AKKKKPAAAKSK-PKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-KAPAKAKPAAKPK 689
             AKK K AAA  K  KP  +   K    K    KA  KPK A KPKA K   K K AA PK
Sbjct:   153 AKKPKAAAAAKKVKKPVAKTTKKPAAAKPAAKKAAPKPKAAPKPKATKKETKPKKAAAPK 212

Query:   690 A---XAAXKPKPA 719
             A    A  KPK A
Sbjct:   213 AKKPAAEKKPKAA 225

 Score = 96 (33.8 bits), Expect = 8.8e-16, Sum P(2) = 8.8e-16
 Identities = 31/90 (34%), Positives = 40/90 (44%), Frame = +3

Query:   372 QAASTELQEASSLPLKKLVAAGKLVK-VKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKS 548
             +A   ++++  +   K   AA K+ K V  + K P     A       P    KP A K 
Sbjct:   142 KAGEKKVKKTIAKKPKAAAAAKKVKKPVAKTTKKPAAAKPAAKKAAPKPKAAPKPKATKK 201

Query:   549 KPKPKPRPAAKAKDTKATKSKAPAKPKPAAK 641
             + KPK   A KAK   A K    AK KPAAK
Sbjct:   202 ETKPKKAAAPKAKKPAAEKKPKAAK-KPAAK 231

 Score = 82 (28.9 bits), Expect = 6.5, P = 1.0
 Identities = 22/52 (42%), Positives = 30/52 (57%), Frame = +1

Query:   112 ATEEPTVAVEPAPEPASADPPLEEKEETKPE-AKAKKTKEP----KPKKVSRP 255
             A  +P  A + AP+P +A  P   K+ETKP+ A A K K+P    KPK   +P
Sbjct:   177 AAAKPA-AKKAAPKPKAAPKPKATKKETKPKKAAAPKAKKPAAEKKPKAAKKP 228


 >gi|6006363|dbj|BAA84793.1|  (AP000559) ESTs AU078183(C62904),C73912(E21020)
            correspond to a region of the predicted gene.; Similar to water
            stress inducible protein (U74296) [Oryza sativa]
            Length = 240

Frame  3 hits (HSPs):                          ___________________________
Frame  2 hits (HSPs):                                ___________          
Frame  1 hits (HSPs):   _______________________________                   
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 240
                       0         50       100        150       200

  Plus Strand HSPs:

 Score = 185 (65.1 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
 Identities = 51/118 (43%), Positives = 69/118 (58%), Frame = +1

Query:   118 EEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKK--VSRPRNP-PTHPSYEE 288
             EE   A+E AP+P  A P  EE EE K E + +K K  K +K    +PR+  P HP Y E
Sbjct:    28 EEAKEALE-APKPEEA-PKAEEGEEKKAEGEKEKEKAKKERKPRARKPRSAGPHHPPYFE 85

Query:   289 MVKDAITSL--KEKTGSSQYAIAKFIEEKHKQ-LPPNFKKLLLYH*RSSSPPENSSKSKA 459
             M+K+AI +L    K GSS YAIAK++ E+H   LP N++K+L    R+ +      K KA
Sbjct:    86 MIKEAIMALDGNGKAGSSPYAIAKYMGEQHMGVLPANYRKVLAVQLRNFAAKGRLVKVKA 145

 Score = 137 (48.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 40/123 (32%), Positives = 56/123 (45%), Frame = +3

Query:   351 EVHRGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPT--RPAAXXXXXXXPAKK 524
             E H G   A     ++  ++ L+   A G+LVKVK SFKL     + A         A K
Sbjct:   113 EQHMGVLPA---NYRKVLAVQLRNFAAKGRLVKVKASFKLSAAEEKKATAAKAARSKAAK 169

Query:   525 KKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKP-KPAAKPKAKAPAKAKPAAKPKAXAA 701
                  AK K  P+P  AA  K   + ++K    P +PA   +A+  A AKP   PK+  +
Sbjct:   170 GVVGGAKRKRTPRPSAAAAKKPASSAEAKKAVPPARPARAKRARKAAPAKPMQPPKSIRS 229

Query:   702 XKPKPA 719
                K A
Sbjct:   230 AISKKA 235

 Score = 81 (28.5 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
 Identities = 26/68 (38%), Positives = 36/68 (52%), Frame = +3

Query:   516 AKKKKPAAAKS-KPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKP-K 689
             A++KK  AAK+ + K        AK  +  +  A A  KPA+  +AK   KA P A+P +
Sbjct:   152 AEEKKATAAKAARSKAAKGVVGGAKRKRTPRPSAAAAKKPASSAEAK---KAVPPARPAR 208

Query:   690 AXAAXKPKPA 719
             A  A K  PA
Sbjct:   209 AKRARKAAPA 218

 Score = 73 (25.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 24/59 (40%), Positives = 31/59 (52%), Frame = +3

Query:   516 AKKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKA 692
             A  KKPA++    K  P PA  A+  +A K+ APAKP     PK+   A +K A K  A
Sbjct:   186 AAAKKPASSAEAKKAVP-PARPARAKRARKA-APAKPMQP--PKSIRSAISKKANKASA 240

 Score = 57 (20.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 20/52 (38%), Positives = 27/52 (51%), Frame = +1

Query:   103 ISMATEEPTVAVEPAPEPASADPP--LEEKEET----KPEAKAKKTKEPKPKK 243
             ++ ATEE   A   A E     PP  +EE +E     KPE +A K +E + KK
Sbjct:     1 MATATEEVAAAAAAAGEAPPPPPPAVVEEAKEALEAPKPE-EAPKAEEGEEKK 52

 Score = 41 (14.4 bits), Expect = 0.032, Sum P(3) = 0.032
 Identities = 11/49 (22%), Positives = 27/49 (55%), Frame = +2

Query:   329 VRANTRLRSSS-RRSTSSFHRTSRSFFSTIEEARRRRKTRQSQRLVQAP 472
             V+A+ +L ++  +++T++    S++    +  A+R+R  R S    + P
Sbjct:   143 VKASFKLSAAEEKKATAAKAARSKAAKGVVGGAKRKRTPRPSAAAAKKP 191


 >gi|535593|gb|AAC14382.1|  (L28727) histone H1-II-1 [Chironomus thummi]
            Length = 234

Frame  3 hits (HSPs):                        _____________________________
Frame  1 hits (HSPs):   ___________________     __________                
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 234
                       0         50        100       150        200

  Plus Strand HSPs:

 Score = 158 (55.6 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
 Identities = 38/87 (43%), Positives = 52/87 (59%), Frame = +1

Query:   163 ADPPLEEKEETK--PEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSS 336
             +DP +E    T     AKAKK K+PK  K  +P+ P THP   EMV +A+ +LKE++GSS
Sbjct:     2 SDPAVEVAPTTPVASPAKAKKEKKPKTDKPKKPKAPRTHPPVSEMVVNAVKTLKERSGSS 61

Query:   337 QYAIAKFIEEKHK----QLPPNFKKLL 405
               AI KF+  ++K    +L P  KK L
Sbjct:    62 LQAIKKFLVAQYKVDTDKLAPFIKKFL 88

 Score = 125 (44.0 bits), Expect = 1.8e-20, Sum P(2) = 1.8e-20
 Identities = 41/107 (38%), Positives = 51/107 (47%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             A+ + + A    +KK +A  K  K   + K+   +P A        AK   P A K+ PK
Sbjct:   135 AAAKPKNAGEKKVKKTIA--KKPKAAAATKIK--KPVAKTTKKTVTAK---PVAKKAVPK 187

Query:   558 PKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAP-AKAKPAAKPKAXA 698
             PK  P  KA    A K K  AKPK A  PKAK P A+ KP A  K  A
Sbjct:   188 PKVAPKPKA----APKPKVAAKPKKAVAPKAKKPVAEKKPKATKKPAA 231

 Score = 124 (43.7 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
 Identities = 45/122 (36%), Positives = 54/122 (44%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRP--AAXXXXXXXPAKKKKP 533
             +G+  + S +L  A+    K+ V   K V  +   K    +P  A         AKK K 
Sbjct:   101 KGKGASGSFKLPVAAK---KEKVVKPKKVAAEKKPKKAAAKPKNAGEKKVKKTIAKKPKA 157

Query:   534 AAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
             AAA    KP  +   K    K    KA  KPK A KPKA AP K K AAKPK   A K K
Sbjct:   158 AAATKIKKPVAKTTKKTVTAKPVAKKAVPKPKVAPKPKA-AP-KPKVAAKPKKAVAPKAK 215

Query:   714 PAXA 725
                A
Sbjct:   216 KPVA 219

 Score = 117 (41.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 40/100 (40%), Positives = 44/100 (44%), Frame = +3

Query:   417 KKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKA---K 587
             KK   A    K  G  K+  T   A         K KKP A  +K     +P AK    K
Sbjct:   130 KKPKKAAAKPKNAGEKKVKKT--IAKKPKAAAATKIKKPVAKTTKKTVTAKPVAKKAVPK 187

Query:   588 DTKATKSKAPAKPKPAAKPK-AKAPAKAKPAAKPKAXAAXKP 710
                A K KA  KPK AAKPK A AP   KP A+ K  A  KP
Sbjct:   188 PKVAPKPKAAPKPKVAAKPKKAVAPKAKKPVAEKKPKATKKP 229

 Score = 104 (36.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 35/98 (35%), Positives = 44/98 (44%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLP-PTRPAAXXXXXXXPAKKK---KPAAA- 542
             A+ + + A    +KK +A  K  K   + K+  P            P  KK   KP  A 
Sbjct:   135 AAAKPKNAGEKKVKKTIA--KKPKAAAATKIKKPVAKTTKKTVTAKPVAKKAVPKPKVAP 192

Query:   543 KSKPKPKPRPAAKAKDTKATKSKAPA---KPKPAAKPKAK 653
             K K  PKP+ AAK K   A K+K P    KPK   KP AK
Sbjct:   193 KPKAAPKPKVAAKPKKAVAPKAKKPVAEKKPKATKKPAAK 232

 Score = 68 (23.9 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 26/68 (38%), Positives = 34/68 (50%), Frame = +3

Query:   378 ASTELQEASSLPL-KKLVAAGKLV-KVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSK 551
             A T  +  ++ P+ KK V   K+  K K +   P  + AA       P K KKP A K K
Sbjct:   168 AKTTKKTVTAKPVAKKAVPKPKVAPKPKAA---PKPKVAAKPKKAVAP-KAKKPVAEK-K 222

Query:   552 PKPKPRPAAK 581
             PK   +PAAK
Sbjct:   223 PKATKKPAAK 232

 Score = 55 (19.4 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
 Identities = 18/43 (41%), Positives = 19/43 (44%), Frame = +3

Query:   591 TKATKSKAPAK-PKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             TK   +    K P  A K K   P K     KPK  AA KPK A
Sbjct:   100 TKGKGASGSFKLPVAAKKEKVVKPKKVAAEKKPKKAAA-KPKNA 142

 Score = 49 (17.2 bits), Expect = 8.2, Sum P(2) = 1.0
 Identities = 17/46 (36%), Positives = 23/46 (50%), Frame = +1

Query:   211 AKKTKEPKPKKVS---RPRNPPTHPSY--EEMVKDAITSLKEKTGSS 336
             AKK K  KPKKV+   +P+     P    E+ VK  I   K K  ++
Sbjct:   115 AKKEKVVKPKKVAAEKKPKKAAAKPKNAGEKKVKKTIAK-KPKAAAA 160


 >gi|2842447|emb|CAA11814.1|  (AJ224073) histone 1 [Mytilus edulis]
            Length = 191

Frame  3 hits (HSPs):                         ____________________________
Frame  1 hits (HSPs):      _____________                                  
                        __________________________________________________
Database sequence:     |            |            |             |          | 191
                       0           50          100           150

  Plus Strand HSPs:

 Score = 140 (49.3 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
 Identities = 37/65 (56%), Positives = 37/65 (56%), Frame = +3

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKP---KPAAKPKAKAPAKAKPAAKPKA 692
             KKKPA AK   KPK     KAK T   K  A  KP   K AAKPKAK  A AK AAKPK 
Sbjct:   110 KKKPAKAKKAAKPKAAKPKKAKSTPKKKKPAAKKPAGEKKAAKPKAKKTA-AKKAAKPKK 168

Query:   693 XAAXKP 710
              AA  P
Sbjct:   169 PAAKSP 174

 Score = 133 (46.8 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
 Identities = 48/105 (45%), Positives = 56/105 (53%), Frame = +3

Query:   402 SSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAK 581
             +SL   K   A    ++ G  K+   +PA        P K  KP  AKS PK K +PAAK
Sbjct:    87 NSLKQSKGTGASGSFRI-GEAKVVKKKPAKAKKAAK-P-KAAKPKKAKSTPKKK-KPAAK 142

Query:   582 --AKDTKATKSKAP-AKPKPAAKPK---AKAPAKAKPAAKPKAXAAXKPK 713
               A + KA K KA     K AAKPK   AK+PAK K AAKPKA    K K
Sbjct:   143 KPAGEKKAAKPKAKKTAAKKAAKPKKPAAKSPAKKK-AAKPKAKKTPKKK 191

 Score = 126 (44.4 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
 Identities = 23/46 (50%), Positives = 31/46 (67%), Frame = +1

Query:   223 KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFI 360
             K PK K  ++P+ P  HP Y EM+  AI +LKE+ GSS+ AI K+I
Sbjct:    14 KSPKKKAAAKPKKPSAHPKYSEMIGKAIAALKERGGSSRQAILKYI 59

 Score = 113 (39.8 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 41/104 (39%), Positives = 50/104 (48%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G   + S  + EA  +  KK   A K  K K +    P + A        PA KK PA 
Sbjct:    93 KGTGASGSFRIGEAKVVK-KKPAKAKKAAKPKAA---KPKK-AKSTPKKKKPAAKK-PAG 146

Query:   540 AK--SKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAK 671
              K  +KPK K   A KA   K   +K+PAK K AAKPKAK   K K
Sbjct:   147 EKKAAKPKAKKTAAKKAAKPKKPAAKSPAKKK-AAKPKAKKTPKKK 191

 Score = 112 (39.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 34/66 (51%), Positives = 35/66 (53%), Frame = +3

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAA 701
             KKKPA AK   KPK   AAK K  K+T    P K KPAAK     PA  K AAKPKA   
Sbjct:   110 KKKPAKAKKAAKPK---AAKPKKAKST----PKKKKPAAKK----PAGEKKAAKPKAKKT 158

Query:   702 XKPKPA 719
                K A
Sbjct:   159 AAKKAA 164

 Score = 42 (14.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 15/28 (53%), Positives = 15/28 (53%), Frame = +3

Query:   636 AKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             AK   K PAKAK AAKPKA        A
Sbjct:   106 AKVVKKKPAKAKKAAKPKA--------A 125


 >gi|729660|sp|P40276|H1B_CHITE  HISTONE H1B >gi|457103|gb|AAA21716.1| (L29108)
            histone H1b [Chironomus tentans]
            Length = 232

Frame  3 hits (HSPs):                     ________________________________
Frame  1 hits (HSPs):      ________________                               
Annotated Domains:          ______________________________________________
                        __________________________________________________
Database sequence:     |          |          |          |         |       | 232
                       0         50        100        150       200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       23..119
   PFAM                 linker_histone: linker histone H1 and H5 39..114
   PRODOM               PD000373: H1(14) H11(5) H12(4)           40..87
   PRODOM               PD186682:                                89..111
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     113..231
__________________


  Plus Strand HSPs:

 Score = 149 (52.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 34/71 (47%), Positives = 45/71 (63%), Frame = +1

Query:   205 AKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK--- 375
             AKAKK K+PK  K  +P+ P THP   EMV +A+ +LKE+ GSS  AI KF+  ++K   
Sbjct:    18 AKAKKEKKPKSDKPKKPKAPRTHPPVSEMVVNAVKTLKERGGSSLQAIKKFLVAQYKVDV 77

Query:   376 -QLPPNFKKLL 405
              +L P  KK L
Sbjct:    78 DKLAPFIKKYL 88

 Score = 141 (49.6 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 46/111 (41%), Positives = 53/111 (47%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPT-RPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPA 575
             LK  V  G+L++ KG     SFKLP   +           A +KKP  A +KPK      
Sbjct:    88 LKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKVVKKPTKAAAEKKPKKAAAKPKKAGEKK 147

Query:   576 AKAKDTKATKSKAPAK-PKPAAKPKAKAPAKAKPAAK---PKAXAAXKPKPA 719
              K    K  K+ A  K  KP AK   K PA AKPAAK   PK  AA KPK A
Sbjct:   148 VKKTIAKKPKAAAATKIKKPVAKT-TKKPAAAKPAAKKAAPKPKAAPKPKAA 198

 Score = 132 (46.5 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
 Identities = 42/102 (41%), Positives = 57/102 (55%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             A+ + ++A    +KK +A  K  K   + K+   +P A       PA  K PAA K+ PK
Sbjct:   136 AAAKPKKAGEKKVKKTIA--KKPKAAAATKIK--KPVAKTTKK--PAAAK-PAAKKAAPK 188

Query:   558 PK--PRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
             PK  P+P A   +TK  ++ AP   KPAA+ K KA AK KPAAK
Sbjct:   189 PKAAPKPKAAKTETKPKRAAAPKAKKPAAEKKPKA-AK-KPAAK 230

 Score = 129 (45.4 bits), Expect = 5.1e-19, Sum P(2) = 5.1e-19
 Identities = 48/107 (44%), Positives = 50/107 (46%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP----KPKPRPAAKAK 587
             KL AA K  KV       PT+ AA        AK KK    K K     KPK   A K K
Sbjct:   110 KLPAAAKKEKVVKK----PTKAAAEKKPKKAAAKPKKAGEKKVKKTIAKKPKAAAATKIK 165

Query:   588 DTKATKSKAPAKPKPAAK---PKAKA---PAKAKPAAKPKAXAAXKPK-PA 719
                A  +K PA  KPAAK   PK KA   P  AK   KPK  AA K K PA
Sbjct:   166 KPVAKTTKKPAAAKPAAKKAAPKPKAAPKPKAAKTETKPKRAAAPKAKKPA 216

 Score = 128 (45.1 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
 Identities = 46/109 (42%), Positives = 57/109 (52%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAK-SK 551
             AA  + ++A++ P K    AG+  KVK +    P   AA           KKPAAAK + 
Sbjct:   128 AAEKKPKKAAAKPKK----AGEK-KVKKTIAKKPKAAAATKIKKPVAKTTKKPAAAKPAA 182

Query:   552 PKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPA---KAKPAAKPKAXAA 701
              K  P+P A  K  KA K++   KPK AA PKAK PA   K K A KP A  A
Sbjct:   183 KKAAPKPKAAPKP-KAAKTET--KPKRAAAPKAKKPAAEKKPKAAKKPAAKKA 232

 Score = 128 (45.1 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
 Identities = 47/112 (41%), Positives = 58/112 (51%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAK-SK 551
             AA  + ++A++ P K    AG+  KVK +    P   AA           KKPAAAK + 
Sbjct:   128 AAEKKPKKAAAKPKK----AGEK-KVKKTIAKKPKAAAATKIKKPVAKTTKKPAAAKPAA 182

Query:   552 PKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
              K  P+P A  K  KA K++   KPK AA PKAK PA  K   KPKA  A KP
Sbjct:   183 KKAAPKPKAAPKP-KAAKTET--KPKRAAAPKAKKPAAEK---KPKA--AKKP 227

 Score = 122 (42.9 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 45/124 (36%), Positives = 54/124 (43%), Frame = +3

Query:   360 RGEAQAASTELQEASSLP--LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKP 533
             +G+  + S +L  A+     +KK   A    K K +   P  + A         AKK K 
Sbjct:   101 KGKGASGSFKLPAAAKKEKVVKKPTKAAAEKKPKKAAAKP--KKAGEKKVKKTIAKKPKA 158

Query:   534 AAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-KAPAKAKPAAKPKA---XAA 701
             AAA    KP  +   K    K    KA  KPK A KPKA K   K K AA PKA    A 
Sbjct:   159 AAATKIKKPVAKTTKKPAAAKPAAKKAAPKPKAAPKPKAAKTETKPKRAAAPKAKKPAAE 218

Query:   702 XKPKPA 719
              KPK A
Sbjct:   219 KKPKAA 224

 Score = 101 (35.6 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
 Identities = 31/74 (41%), Positives = 35/74 (47%), Frame = +3

Query:   420 KLVAAGKLVK-VKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTK 596
             K  AA K+ K V  + K P     A       P    KP AAK++ KPK   A KAK   
Sbjct:   157 KAAAATKIKKPVAKTTKKPAAAKPAAKKAAPKPKAAPKPKAAKTETKPKRAAAPKAKKPA 216

Query:   597 ATKSKAPAKPKPAAK 641
             A K    AK KPAAK
Sbjct:   217 AEKKPKAAK-KPAAK 230

 Score = 91 (32.0 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
 Identities = 32/67 (47%), Positives = 33/67 (49%), Frame = +3

Query:   525 KKPAAAKS-KPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAA 701
             K PAAAK  K   KP  AA  K  K    KA AKPK A + K K       A KPKA AA
Sbjct:   110 KLPAAAKKEKVVKKPTKAAAEKKPK----KAAAKPKKAGEKKVKKTI----AKKPKAAAA 161

Query:   702 XKPKPAXA 725
              K K   A
Sbjct:   162 TKIKKPVA 169


 >gi|2232178|gb|AAC14377.1|  (AF002681) histone H1-II-2 [Chironomus thummi
            thummi]
            Length = 226

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):   ____________________                              
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Plus Strand HSPs:

 Score = 150 (52.8 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
 Identities = 36/86 (41%), Positives = 51/86 (59%), Frame = +1

Query:   163 ADPPLEEKE-ETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQ 339
             +DP +E         AKAKK K+PK  K ++P+ P +HP   EMV +A+ +LKE+ GSS 
Sbjct:     2 SDPAVEVAPVPVASPAKAKKEKKPKTDKPTKPKAPKSHPPVSEMVVNAVKTLKERGGSSL 61

Query:   340 YAIAKFIEEKHK----QLPPNFKKLL 405
              AI KF+  ++K    +L P  KK L
Sbjct:    62 QAIKKFLVAQYKVDTDKLAPFIKKFL 87

 Score = 134 (47.2 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
 Identities = 46/117 (39%), Positives = 50/117 (42%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKP----K 557
             LK  V  G+L++ KG     SFKLP              A KK   KP  A  K     K
Sbjct:    87 LKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKVVKPKVTAVKKVTAKPKKASVKKTIAKK 146

Query:   558 PKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAP-AKAKPAAKPKAXAAXKPKPAXA 725
             PK   A K K   A  +K PA  KP  K  A  P A  KP A PK   A KPK A A
Sbjct:   147 PKAATATKIKKPVAKTTKKPATAKPVTKKVAPKPKATPKPKAAPKPKVADKPKKAVA 203

 Score = 125 (44.0 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
 Identities = 44/114 (38%), Positives = 51/114 (44%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK--KKPAAA 542
             A A   ++ +     +KK+ A  K   VK +    P   AA       P  K  KKPA A
Sbjct:   112 AAAKKEKVVKPKVTAVKKVTAKPKKASVKKTIAKKPK--AATATKIKKPVAKTTKKPATA 169

Query:   543 KSKPKP-KPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
             K   K   P+P A  K   A K K   KPK A  PKAK  A  K   KPKA  A KP
Sbjct:   170 KPVTKKVAPKPKATPKPKAAPKPKVADKPKKAVAPKAKKSAAEK---KPKA--AKKP 221

 Score = 125 (44.0 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
 Identities = 43/115 (37%), Positives = 50/115 (43%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK--KKPAAA 542
             A A   ++ +     +KK+ A  K   VK +    P   AA       P  K  KKPA A
Sbjct:   112 AAAKKEKVVKPKVTAVKKVTAKPKKASVKKTIAKKPK--AATATKIKKPVAKTTKKPATA 169

Query:   543 KSKPKP-KPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPA---KAKPAAKPKAXAA 701
             K   K   P+P A  K   A K K   KPK A  PKAK  A   K K A KP A  A
Sbjct:   170 KPVTKKVAPKPKATPKPKAAPKPKVADKPKKAVAPKAKKSAAEKKPKAAKKPAAKKA 226

 Score = 117 (41.2 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
 Identities = 43/106 (40%), Positives = 44/106 (41%), Frame = +3

Query:   456 GSFKLPPTRPAAXXXXXXXPAKKK---KPAAAKSKP----KPKPRPAAKAKD--TKATKS 608
             GSFKLP              A KK   KP  A  K     KPK   A K K    K TK 
Sbjct:   106 GSFKLPAAAKKEKVVKPKVTAVKKVTAKPKKASVKKTIAKKPKAATATKIKKPVAKTTKK 165

Query:   609 KAPAKP-------KPAAKPKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
              A AKP       KP A PK KA  K K A KPK   A K K + A
Sbjct:   166 PATAKPVTKKVAPKPKATPKPKAAPKPKVADKPKKAVAPKAKKSAA 211

 Score = 113 (39.8 bits), Expect = 8.7e-18, Sum P(2) = 8.7e-18
 Identities = 42/126 (33%), Positives = 51/126 (40%), Frame = +3

Query:   366 EAQAASTELQEAS-SLPLKKLVAAGKLVKVK-GSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             + Q   T+ + AS S  L       K+VK K  + K    +P           K K   A
Sbjct:    93 KGQLLQTKGKGASGSFKLPAAAKKEKVVKPKVTAVKKVTAKPKKASVKKTIAKKPKAATA 152

Query:   540 AK-SKP--KPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAX-AAXK 707
              K  KP  K   +PA     TK    K  A PKP A PK K   K K A  PKA  +A +
Sbjct:   153 TKIKKPVAKTTKKPATAKPVTKKVAPKPKATPKPKAAPKPKVADKPKKAVAPKAKKSAAE 212

Query:   708 PKPAXA 725
              KP  A
Sbjct:   213 KKPKAA 218


 >gi|121928|sp|P15870|H1D_STRPU  HISTONE H1-DELTA >gi|85365|pir||A32137 histone
            H1-delta - sea urchin (Strongylocentrotus purpuratus)
            >gi|161485|gb|AAA30055.1| (J03807) histone H1-delta
            [Strongylocentrotus purpuratus]
            Length = 185

Frame  3 hits (HSPs):                        _____________________________
Frame  1 hits (HSPs):    ________________                                 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 185
                       0            50          100           150
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       16..111
   PFAM                 linker_histone: linker histone H1 and H5 32..106
   PRODOM               PD000373: H1(14) H11(5) H12(4)           33..68
   PRODOM               PD194183: H1D_STRPU                      70..104
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     110..182
__________________


  Plus Strand HSPs:

 Score = 135 (47.5 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
 Identities = 26/59 (44%), Positives = 38/59 (64%), Frame = +1

Query:   190 ETKPEAKAKKT-KEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIE 363
             +  P A A  T K+   KK S+P+ P +HP Y +M+  A+ SLKEK GSS+ AI K+++
Sbjct:     5 DAAPAAPAPSTPKKAAKKKASKPKTPASHPKYSDMIASALESLKEKKGSSRQAILKYVK 63

 Score = 134 (47.2 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
 Identities = 47/100 (47%), Positives = 53/100 (53%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             LK+ V +G+L  VKGS        A+         K  K AAAK K  PK +PAAK    
Sbjct:    80 LKRGVTSGQLRHVKGS-------GASGSFLLAEKTKTPKKAAAK-KATPKKKPAAKKTKK 131

Query:   594 KATK--SKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
              A K  +K PAK KPAAK K   PA AK AAKP A  A  PK
Sbjct:   132 PAAKKATKKPAK-KPAAKKKVAKPA-AKKAAKPVAKKAT-PK 170

 Score = 119 (41.9 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 45/98 (45%), Positives = 51/98 (52%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             LK+ V +G+L  VKGS        A+         K  K AAAK K  PK +PAAK    
Sbjct:    80 LKRGVTSGQLRHVKGS-------GASGSFLLAEKTKTPKKAAAK-KATPKKKPAAKKTKK 131

Query:   594 KATK--SKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXK 707
              A K  +K PAK KPAAK K   PA AK AAKP A    K
Sbjct:   132 PAAKKATKKPAK-KPAAKKKVAKPA-AKKAAKPVA----K 165

 Score = 109 (38.4 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
 Identities = 32/64 (50%), Positives = 34/64 (53%), Frame = +3

Query:   519 KKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXA 698
             K  K AAAK K  PK +PAAK       K+K PA  K   KP AK PA  K  AKP A  
Sbjct:   108 KTPKKAAAK-KATPKKKPAAK-------KTKKPAAKKATKKP-AKKPAAKKKVAKPAAKK 158

Query:   699 AXKP 710
             A KP
Sbjct:   159 AAKP 162

 Score = 94 (33.1 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
 Identities = 36/98 (36%), Positives = 42/98 (42%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA 539
             +G   + S  L E +  P KK  A     K K + K   T+  A       PAKK  PAA
Sbjct:    93 KGSGASGSFLLAEKTKTP-KKAAAKKATPKKKPAAK--KTKKPAAKKATKKPAKK--PAA 147

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAK 653
              K   KP  + AAK    KAT  K   K   AAK K K
Sbjct:   148 KKKVAKPAAKKAAKPVAKKATPKKKVVKK--AAKGKGK 183

 Score = 70 (24.6 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 31/93 (33%), Positives = 36/93 (38%), Frame = +3

Query:   360 RGEAQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLP--PTRPAAXXXXXXXPAKKKKP 533
             +G   + S  L E +  P KK  A     K K + K    P    A       PA KKK 
Sbjct:    93 KGSGASGSFLLAEKTKTP-KKAAAKKATPKKKPAAKKTKKPAAKKATKKPAKKPAAKKKV 151

Query:   534 A--AAKSKPKPKPRPAAKAKDT--KATKSKAPAK 623
             A  AAK   KP  + A   K    KA K K   K
Sbjct:   152 AKPAAKKAAKPVAKKATPKKKVVKKAAKGKGKKK 185


 >gi|7494629|pir||T42231  histone H1.1 - Caenorhabditis elegans
            >gi|7506068|pir||T23778 histone H1.1 - Caenorhabditis elegans
            >gi|2407321|gb|AAB70665.1| (AF017810) histone H1.1 [Caenorhabditis
            elegans] >gi|3878755|emb|CAB01892.1| (Z79603) predicted using
            Genefinder~contains similarity to Pfam domain: PF00538 (linker
            histone H1 and H5 family), Score=150.8, E-value=7.8e-42, N=1~cDNA
            EST CEMSH59F comes from this gene; cDNA EST CEMSH59R comes from
            this gene; cDNA EST CEESY49F comes>
            Length = 208

Frame  3 hits (HSPs):                       ______________________________
Frame  1 hits (HSPs):      _______________                                
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 208
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 144 (50.7 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
 Identities = 50/117 (42%), Positives = 59/117 (50%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGS-----FKLPPTRPAAXX-XXXXXPAKKKKPAAAKS---KPKPKP 566
             LK+ V +  LV+  GS     F++P    AA        PA  KKPAAAK    + K K 
Sbjct:    88 LKRGVTSKALVQAAGSGANGRFRVPEKAAAAKKPAAAKKPAAAKKPAAAKKATGEKKAKK 147

Query:   567 RPAAKAK-----DTKATKSKAPAK-PKPAAKPKAKAPAKA---KPAAKPKAXAAXKP 710
               AAK K     D K  K+K+P K  KPAAK  AK+PAK    K  AKP A  A KP
Sbjct:   148 PAAAKPKKAATGDKKVKKAKSPKKVAKPAAKKVAKSPAKKAAPKKIAKPAAKKAAKP 204

 Score = 137 (48.2 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
 Identities = 26/56 (46%), Positives = 37/56 (66%), Frame = +1

Query:   208 KAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK 375
             KAK  K  KP KV++ + P  HP Y  M+K+AI  LK++ G+S+ AI KFI + +K
Sbjct:    17 KAKAAKAAKPTKVAKAKAPVAHPPYINMIKEAIKQLKDRKGASKQAILKFISQNYK 72

 Score = 127 (44.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 39/78 (50%), Positives = 43/78 (55%), Frame = +3

Query:   513 PAKKKKPAAAKS---KPKPKPRPAAKAK-----DTKATKSKAPAK-PKPAAKPKAKAPAK 665
             PA  KKPAAAK    + K K   AAK K     D K  K+K+P K  KPAAK  AK+PAK
Sbjct:   127 PAAAKKPAAAKKATGEKKAKKPAAAKPKKAATGDKKVKKAKSPKKVAKPAAKKVAKSPAK 186

Query:   666 A---KPAAKPKAXAAXKP 710
                 K  AKP A  A KP
Sbjct:   187 KAAPKKIAKPAAKKAAKP 204

 Score = 125 (44.0 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
 Identities = 38/85 (44%), Positives = 43/85 (50%), Frame = +3

Query:   480 RPAAXX--XXXXXPAKKKKPAAAKSKPKP---KPRPAAKAKDTKATKSKAPAK-PKPAAK 641
             +PAA         PA  KK    K   KP   KP+ AA   D K  K+K+P K  KPAAK
Sbjct:   120 KPAAAKKPAAAKKPAAAKKATGEKKAKKPAAAKPKKAATG-DKKVKKAKSPKKVAKPAAK 178

Query:   642 PKAKAPAKA---KPAAKPKAXAAXKP 710
               AK+PAK    K  AKP A  A KP
Sbjct:   179 KVAKSPAKKAAPKKIAKPAAKKAAKP 204

 Score = 94 (33.1 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
 Identities = 39/99 (39%), Positives = 45/99 (45%), Frame = +3

Query:   372 QAASTELQEASSLPLK-KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKS 548
             +AA+ +   A+  P   K  AA K  K  G  K    +PAA          KK   A KS
Sbjct:   114 KAAAAKKPAAAKKPAAAKKPAAAK--KATGEKKAK--KPAAAKPKKAATGDKKVKKA-KS 168

Query:   549 KPKPKPRPAAKAKDTKATKSKAPAK-PKPAAKPKAKAPAKA 668
              PK   +PAAK       K  AP K  KPAAK  AK  AKA
Sbjct:   169 -PKKVAKPAAKKVAKSPAKKAAPKKIAKPAAKKAAKPAAKA 208

 Score = 84 (29.6 bits), Expect = 5.7e-13, Sum P(2) = 5.7e-13
 Identities = 29/55 (52%), Positives = 29/55 (52%), Frame = +3

Query:   564 PRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAK-PAA-KPKAXAAX--KPKPA 719
             P  AA AK   A K  A AK KPAA  KA    KAK PAA KPK  A    K K A
Sbjct:   112 PEKAAAAKKPAAAKKPAAAK-KPAAAKKATGEKKAKKPAAAKPKKAATGDKKVKKA 166

 Score = 82 (28.9 bits), Expect = 9.2e-13, Sum P(2) = 9.2e-13
 Identities = 27/52 (51%), Positives = 27/52 (51%), Frame = +3

Query:   564 PRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             P  AA AK   A K  A AK KPAA  KA    KAK   KP   AA KPK A
Sbjct:   112 PEKAAAAKKPAAAKKPAAAK-KPAAAKKATGEKKAK---KP---AAAKPKKA 156


 >gi|633704|gb|AAC14381.1|  (L28726) histone H1-III-1 [Chironomus thummi]
            Length = 231

Frame  3 hits (HSPs):                     ________________________________
Frame  1 hits (HSPs):   ___________________                               
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 231
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 152 (53.5 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
 Identities = 36/86 (41%), Positives = 51/86 (59%), Frame = +1

Query:   163 ADPPLEEKE-ETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQ 339
             +DP +E         AKAKK K+PK  K  +P+ P THP   +M+ +AI +LKE++GSS 
Sbjct:     2 SDPAIEVAPVPVASPAKAKKEKKPKSDKPKKPKAPRTHPPVSDMIVNAIKTLKERSGSSV 61

Query:   340 YAIAKFIEEKHK----QLPPNFKKLL 405
              AI KF+  ++K    +L P  KK L
Sbjct:    62 QAIKKFLVAQYKVDTDKLSPFIKKYL 87

 Score = 131 (46.1 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
 Identities = 38/90 (42%), Positives = 47/90 (52%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             +KK +A  K  KV  + K+   +P A        AK  K   AK K  PKP+ + K K  
Sbjct:   146 IKKTIA--KKPKVASATKIK--KPVAKTTKKPAAAKPSKKVVAKPKAAPKPKASPKPKVA 201

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
             K  K+ AP   KPAA+ K KA AK KPAAK
Sbjct:   202 KPKKAAAPKAKKPAAEKKPKA-AK-KPAAK 229

 Score = 129 (45.4 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 45/115 (39%), Positives = 53/115 (46%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPT-RPAAXXXXXXXPAKKKKPAAAKSKPKP----- 560
             LK  V  G+L++ KG     SFKLP   +             +KKP  A S+PK      
Sbjct:    87 LKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKVVKKVTKKVTEKKPKKAVSEPKTGEKKI 146

Query:   561 KPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAK---AKPAAKPKAXAAXKPKPA 719
             K   A K K   ATK K P   K   KP A  P+K   AKP A PK  A+ KPK A
Sbjct:   147 KKTIAKKPKVASATKIKKPVA-KTTKKPAAAKPSKKVVAKPKAAPKPKASPKPKVA 201

 Score = 126 (44.4 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 42/102 (41%), Positives = 47/102 (46%), Frame = +3

Query:   420 KLVAAGKLVKV--KGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             KL AA K  KV  K + K+   +P           KK K   AK   KPK   A K K  
Sbjct:   109 KLPAAAKKEKVVKKVTKKVTEKKPKKAVSEPKTGEKKIKKTIAK---KPKVASATKIKKP 165

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
              A  +K PA  KP+ K  AK  A  KP A PK   A KPK A A
Sbjct:   166 VAKTTKKPAAAKPSKKVVAKPKAAPKPKASPKPKVA-KPKKAAA 208

 Score = 123 (43.3 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
 Identities = 41/98 (41%), Positives = 47/98 (47%), Frame = +3

Query:   417 KKLVAAGKL--VKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKD 590
             KK V+  K    K+K +    P   +A           KKPAAAK   K   +P A  K 
Sbjct:   133 KKAVSEPKTGEKKIKKTIAKKPKVASATKIKKPVAKTTKKPAAAKPSKKVVAKPKAAPKP 192

Query:   591 TKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKP 710
               + K K  AKPK AA PKAK PA  K   KPKA  A KP
Sbjct:   193 KASPKPKV-AKPKKAAAPKAKKPAAEK---KPKA--AKKP 226

 Score = 123 (43.3 bits), Expect = 4.6e-19, Sum P(2) = 4.6e-19
 Identities = 40/99 (40%), Positives = 46/99 (46%), Frame = +3

Query:   417 KKLVAAGKL--VKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKD 590
             KK V+  K    K+K +    P   +A           KKPAAAK   K   +P A  K 
Sbjct:   133 KKAVSEPKTGEKKIKKTIAKKPKVASATKIKKPVAKTTKKPAAAKPSKKVVAKPKAAPKP 192

Query:   591 TKATKSKAPAKPKPAAKPKAKAPA---KAKPAAKPKAXAA 701
               + K K  AKPK AA PKAK PA   K K A KP A  A
Sbjct:   193 KASPKPKV-AKPKKAAAPKAKKPAAEKKPKAAKKPAAKKA 231

 Score = 115 (40.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 37/73 (50%), Positives = 41/73 (56%), Frame = +3

Query:   516 AKKKKPAAAKS--KP--KPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
             AKK K A+A    KP  K   +PAA AK +K   +K  A PKP A PK K  AK K AA 
Sbjct:   151 AKKPKVASATKIKKPVAKTTKKPAA-AKPSKKVVAKPKAAPKPKASPKPKV-AKPKKAAA 208

Query:   684 PKA---XAAXKPKPA 719
             PKA    A  KPK A
Sbjct:   209 PKAKKPAAEKKPKAA 223

 Score = 83 (29.2 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
 Identities = 29/68 (42%), Positives = 35/68 (51%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLV-KVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             A T  + A++ P KK+VA  K   K K S K    +P         P K KKPAA K KP
Sbjct:   167 AKTTKKPAAAKPSKKVVAKPKAAPKPKASPKPKVAKPKKAAA----P-KAKKPAAEK-KP 220

Query:   555 KPKPRPAAK 581
             K   +PAAK
Sbjct:   221 KAAKKPAAK 229


 >gi|121945|sp|P21895|H1_CHITH  HISTONE H1 >gi|103006|pir||S18006 histone H1 -
            midge (Chironomus thummi thummi) >gi|2118975|pir||E56580 histone H1
            - midge (Chironomus thummi thummi) >gi|7087|emb|CAA39775.1|
            (X56335) histone H1 [Chironomus thummi]
            Length = 231

Frame  3 hits (HSPs):                     ________________________________
Frame  1 hits (HSPs):   ___________________    ____________               
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 231
                       0         50        100        150        200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       22..118
   PFAM                 linker_histone: linker histone H1 and H5 38..113
   PRODOM               PD000373: H1(14) H11(5) H12(4)           39..86
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     111..223
__________________


  Plus Strand HSPs:

 Score = 149 (52.5 bits), Expect = 8.8e-20, Sum P(2) = 8.8e-20
 Identities = 36/86 (41%), Positives = 50/86 (58%), Frame = +1

Query:   163 ADPPLEEKE-ETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQ 339
             +DP +E         AKAKK K+PK  K  +P+ P THP   +M+ +AI +LKE+ GSS 
Sbjct:     2 SDPAIEVAPVPVASPAKAKKEKKPKSDKPKKPKAPRTHPPVSDMIVNAIKTLKERGGSSV 61

Query:   340 YAIAKFIEEKHK----QLPPNFKKLL 405
              AI KF+  ++K    +L P  KK L
Sbjct:    62 QAIKKFLVAQYKVDTDKLSPFIKKYL 87

 Score = 136 (47.9 bits), Expect = 8.8e-20, Sum P(2) = 8.8e-20
 Identities = 51/115 (44%), Positives = 56/115 (48%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPT-RPAAXXXXXXXPAKKKKPAAAKSKPKP----- 560
             LK  V  G+L++ KG     SFKLP   +             +KKP  A SKPK      
Sbjct:    87 LKSAVEKGQLLQTKGKGASGSFKLPAAAKKEKVVKKVTKKVTEKKPKKAVSKPKTGEKKV 146

Query:   561 KPRPAAKAKDTKATKSKAP-AKP--KPAA-KPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             K   A K K   ATK K P AK   KPAA KP  K  AK K A KPKA  A KPK A
Sbjct:   147 KKTIAKKPKVASATKIKKPVAKTTKKPAAAKPTKKVAAKPKAAPKPKA--APKPKVA 201

 Score = 133 (46.8 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
 Identities = 39/90 (43%), Positives = 48/90 (53%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             +KK +A  K  KV  + K+   +P A        AK  K  AAK K  PKP+ A K K  
Sbjct:   146 VKKTIA--KKPKVASATKIK--KPVAKTTKKPAAAKPTKKVAAKPKAAPKPKAAPKPKVA 201

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
             K  K+ AP   KPAA+ K KA AK KP+AK
Sbjct:   202 KPKKAAAPKAKKPAAEKKPKA-AK-KPSAK 229

 Score = 128 (45.1 bits), Expect = 6.0e-19, Sum P(2) = 6.0e-19
 Identities = 42/99 (42%), Positives = 46/99 (46%), Frame = +3

Query:   417 KKLVAAGKL--VKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKD 590
             KK V+  K    KVK +    P   +A           KKPAAAK   K   +P A  K 
Sbjct:   133 KKAVSKPKTGEKKVKKTIAKKPKVASATKIKKPVAKTTKKPAAAKPTKKVAAKPKAAPKP 192

Query:   591 TKATKSKAPAKPKPAAKPKAKAPA---KAKPAAKPKAXAA 701
               A K K  AKPK AA PKAK PA   K K A KP A  A
Sbjct:   193 KAAPKPKV-AKPKKAAAPKAKKPAAEKKPKAAKKPSAKKA 231

 Score = 126 (44.4 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
 Identities = 48/107 (44%), Positives = 51/107 (47%), Frame = +3

Query:   420 KLVAAGKLVKV--KGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKD- 590
             KL AA K  KV  K + K+   +P           KK K   AK   KPK   A K K  
Sbjct:   109 KLPAAAKKEKVVKKVTKKVTEKKPKKAVSKPKTGEKKVKKTIAK---KPKVASATKIKKP 165

Query:   591 -TKATKSKAPAKP--KPAAKPKAKAPAKAKP---AAKPKAXAAXKPK-PA 719
               K TK  A AKP  K AAKPKA    KA P    AKPK  AA K K PA
Sbjct:   166 VAKTTKKPAAAKPTKKVAAKPKAAPKPKAAPKPKVAKPKKAAAPKAKKPA 215

 Score = 75 (26.4 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
 Identities = 25/68 (36%), Positives = 31/68 (45%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             A T  + A++ P KK+ A  K        K  P    A       P K KKPAA K KPK
Sbjct:   167 AKTTKKPAAAKPTKKVAAKPKAAPKP---KAAPKPKVAKPKKAAAP-KAKKPAAEK-KPK 221

Query:   558 PKPRPAAK 581
                +P+AK
Sbjct:   222 AAKKPSAK 229

 Score = 56 (19.7 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 23/52 (44%), Positives = 24/52 (46%), Frame = +3

Query:   570 PAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKP-KAXAAXKPKPAXA 725
             PAA AK  K  K     K     KPK KA +K K   K  K   A KPK A A
Sbjct:   111 PAA-AKKEKVVKKVT--KKVTEKKPK-KAVSKPKTGEKKVKKTIAKKPKVASA 159

 Score = 54 (19.0 bits), Expect = 0.38, Sum P(2) = 0.32
 Identities = 20/55 (36%), Positives = 26/55 (47%), Frame = +1

Query:   172 PLEEKEETKPEAKAKKTKEPKPKK-VSRPRNPPTHPSYEEMVKDAITSLKEKTGSS 336
             P   K+E   +   KK  E KPKK VS+P+        E+ VK  I   K K  S+
Sbjct:   111 PAAAKKEKVVKKVTKKVTEKKPKKAVSKPKTG------EKKVKKTIAK-KPKVASA 159


 >gi|462228|sp|P35060|H1_TIGCA  HISTONE H1 >gi|1085852|pir||A56612 histone H1 -
            Tigriopus californicus >gi|161894|gb|AAC41551.1| (M84797) histone
            H1 [Tigriopus californicus] >gi|260525|gb|AAA12276.1| (S49118)
            histone H1 [Tigriopus californicus, Peptide, 181 aa]
            Length = 181

Frame  3 hits (HSPs):           __________________________________________
Frame  1 hits (HSPs):   _______________                                   
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       4..100
   PFAM                 linker_histone: linker histone H1 and H5 20..95
   PRODOM               PD000373: H1(14) H11(5) H12(4)           21..68
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     93..179
__________________


  Plus Strand HSPs:

 Score = 134 (47.2 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 48/113 (42%), Positives = 51/113 (45%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKKKP---AAAKSKPKPKPR 569
             LK LV   KLV+ KG     SFKL     A        P K K P   AAA  KP  + +
Sbjct:    69 LKSLVEKKKLVQTKGAGASGSFKLAAAAKAEKPKAVAKPKKAKTPKKKAAATKKPTGEKK 128

Query:   570 PAAKAKDTKATKSKAPAKPKPAAKPKAKA-PAKAKPAAK-----PKAXAAXKPK 713
              A   K   A K  A AKPK A  PK KA PAK  P  K     PK  AA K K
Sbjct:   129 -AKTPKKKPAAKKPAAAKPKKAKTPKKKAAPAKKTPVKKVKKTSPKKKAAPKKK 181

 Score = 131 (46.1 bits), Expect = 4.6e-07, P = 4.6e-07
 Identities = 50/120 (41%), Positives = 61/120 (50%), Frame = +3

Query:   375 AASTELQE--ASSLP-LKKLVAAG---KLVK----VKGSFK-LPPTRPAAXXXXXXXPAK 521
             AA   L+E   SSLP +KK +AA     +VK    +K + K L   +             
Sbjct:    30 AAIKALKERNGSSLPAIKKYIAANYKVDVVKNAHFIKKALKSLVEKKKLVQTKGAGASGS 89

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAA 701
              K  AAAK++   KP+  AK K  K  K KA A  KP  + KAK P K KPAAK  A A 
Sbjct:    90 FKLAAAAKAE---KPKAVAKPKKAKTPKKKAAATKKPTGEKKAKTPKK-KPAAKKPAAA- 144

Query:   702 XKPKPA 719
              KPK A
Sbjct:   145 -KPKKA 149

 Score = 127 (44.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 27/53 (50%), Positives = 34/53 (64%), Frame = +1

Query:   217 KTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK 375
             +T   KPKKVS+P+  PTHP    MV  AI +LKE+ GSS  AI K+I   +K
Sbjct:     3 ETTSAKPKKVSKPKAKPTHPPTSVMVMAAIKALKERNGSSLPAIKKYIAANYK 55

 Score = 122 (42.9 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 50/130 (38%), Positives = 61/130 (46%), Frame = +3

Query:   375 AASTELQE--ASSLP-LKKLVAAG---KLVK----VKGSFK-LPPTRPAAXXXXXXXPAK 521
             AA   L+E   SSLP +KK +AA     +VK    +K + K L   +             
Sbjct:    30 AAIKALKERNGSSLPAIKKYIAANYKVDVVKNAHFIKKALKSLVEKKKLVQTKGAGASGS 89

Query:   522 KKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKA----KPAA-KP 686
              K  AAAK++   KP+  AK K  K  K KA A  KP  + KAK P K     KPAA KP
Sbjct:    90 FKLAAAAKAE---KPKAVAKPKKAKTPKKKAAATKKPTGEKKAKTPKKKPAAKKPAAAKP 146

Query:   687 KAXAAXKPKPAXA 725
             K     K K A A
Sbjct:   147 KKAKTPKKKAAPA 159

 Score = 117 (41.2 bits), Expect = 5.3e-16, Sum P(2) = 5.3e-16
 Identities = 36/91 (39%), Positives = 39/91 (42%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTR-PAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTK 596
             KL AA K  K K   K    + P         P  +KK    K KP  K   AAK K  K
Sbjct:    91 KLAAAAKAEKPKAVAKPKKAKTPKKKAAATKKPTGEKKAKTPKKKPAAKKPAAAKPKKAK 150

Query:   597 ATKSKA-PAKPKPAAKPKAKAPAKAKPAAKPK 689
               K KA PAK  P  K K  +P K K A K K
Sbjct:   151 TPKKKAAPAKKTPVKKVKKTSPKK-KAAPKKK 181

 Score = 93 (32.7 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 24/46 (52%), Positives = 25/46 (54%), Frame = +3

Query:   582 AKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             A   KA K KA AKPK A  PK KA A  KP  + KA    K KPA
Sbjct:    93 AAAAKAEKPKAVAKPKKAKTPKKKAAATKKPTGEKKAKTPKK-KPA 137


 >gi|6752901|gb|AAF27930.1|AF222804_1  (AF222804) histone H1 [Euphorbia esula]
            Length = 229

Frame  3 hits (HSPs):                        ____________________________ 
Frame  1 hits (HSPs):   _______________________________________           
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 229
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 243 (85.5 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 65/178 (36%), Positives = 96/178 (53%), Frame = +1

Query:   145 APEPASADPPLEEKEETKPE--AKAKKTKEPKPKK----VSRPRNPPT--HPSYEEMVKD 300
             A  P SA P + E  E K +   KA   K PK KK      +P++  T  HPS+ EM+ D
Sbjct:     2 ADTPVSA-PVVPEVTERKSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISD 60

Query:   301 AITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPENSSKSKARSSSHLP 480
             AI++LKE+TGSSQYAI KF+E+KHKQLP NF+KLLL+H +      +    K ++S  LP
Sbjct:    61 AISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVA--SGKLVKVKNSFKLP 118

Query:   481 DLLXXXXXXXXRQRRKSPQLPSPSLSLSPGPLR---KPRILRQLNRRHQLSPSQLLSLKP 651
                            K P +P P ++  P   +   KP+   ++  + + +   +    P
Sbjct:   119 SARAAPAPALA----KKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATTKTVAKKIP 174

Query:   652 KLQPR 666
               +P+
Sbjct:   175 AAKPK 179

 Score = 199 (70.1 bits), Expect = 6.1e-15, P = 6.1e-15
 Identities = 58/104 (55%), Positives = 61/104 (58%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             LKKLVA+GKLVKVK SFKLP  R A        PA    PA AK    PKP+ AAK K  
Sbjct:    99 LKKLVASGKLVKVKNSFKLPSARAA--------PA----PALAKKPTIPKPKVAAKPKTA 146

Query:   594 KATKSKAPAKPKPAAKPKA--KAPAKAKPAAKPKAXAAXKPKPAXA 725
             K   +K  AK K AAK KA  K  AK  PAAKPKA  A KPK   A
Sbjct:   147 KIG-AKPKAKAKVAAKTKATTKTVAKKIPAAKPKAKTAGKPKTVAA 191

 Score = 190 (66.9 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 54/99 (54%), Positives = 57/99 (57%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP-KPKPRPAAKAK- 587
             LKKLVA+GKLVKVK SFKLP  R A        P   K   AAK K  K   +P AKAK 
Sbjct:    99 LKKLVASGKLVKVKNSFKLPSARAAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKV 158

Query:   588 --DTKATKSKAPAKPKPAAKPKAKAPAKAKP-AAKPKAXA 698
                TKAT +K  AK  PAAKPKAK   K K  AAKP   A
Sbjct:   159 AAKTKAT-TKTVAKKIPAAKPKAKTAGKPKTVAAKPAKVA 197

 Score = 115 (40.5 bits), Expect = 0.00078, P = 0.00078
 Identities = 39/93 (41%), Positives = 43/93 (46%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKA 599
             KLV      K+  S +  P    A       P    KP  AK   KPK +    AK TKA
Sbjct:   107 KLVKVKNSFKLP-SARAAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAK-TKA 164

Query:   600 TKSKAPAKPKPAAKPKAKAPAKAKP-AAKPKAXA 698
             T +K  AK  PAAKPKAK   K K  AAKP   A
Sbjct:   165 T-TKTVAKKIPAAKPKAKTAGKPKTVAAKPAKVA 197

 Score = 100 (35.2 bits), Expect = 0.049, P = 0.048
 Identities = 45/111 (40%), Positives = 49/111 (44%), Frame = +3

Query:   420 KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAK--SKPKPKPRPAAKAK-D 590
             KLV      K+  S +  P    A       P    KP  AK  +KPK K + AAK K  
Sbjct:   107 KLVKVKNSFKLP-SARAAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKAT 165

Query:   591 TKATKSKAPA-KPKP--AAKPKAKA--PAK-AKPAA-----KPKAXAAXKPK 713
             TK    K PA KPK   A KPK  A  PAK AK AA     K KA    K K
Sbjct:   166 TKTVAKKIPAAKPKAKTAGKPKTVAAKPAKVAKTAAVASPGKKKAVPVKKVK 217

 Score = 99 (34.8 bits), Expect = 0.064, P = 0.062
 Identities = 36/106 (33%), Positives = 48/106 (45%), Frame = +3

Query:   369 AQAA-STELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAA- 542
             A+AA +  L +  ++P  K+ A  K  K+ G+      + AA          KK PAA  
Sbjct:   120 ARAAPAPALAKKPTIPKPKVAAKPKTAKI-GAKPKAKAKVAAKTKATTKTVAKKIPAAKP 178

Query:   543 KSKPKPKPRPAAKAKDTKATKSKAPAKP-KPAAKPKAKAPAKAKPAAK 683
             K+K   KP+  A AK  K  K+ A A P K  A P  K      PA K
Sbjct:   179 KAKTAGKPKTVA-AKPAKVAKTAAVASPGKKKAVPVKKVKTVKSPAGK 225


 >gi|121902|sp|P26568|H11_ARATH  HISTONE H1.1 >gi|1070594|pir||HSMU11 histone
            H1.1 - Arabidopsis thaliana >gi|16317|emb|CAA44314.1| (X62458)
            Histone H1 [Arabidopsis thaliana]
            >gi|7523700|gb|AAF63139.1|AC011001_9 (AC011001) histone H1-1
            [Arabidopsis thaliana]
            Length = 274

Frame  3 hits (HSPs):                  __________________________________ 
Frame  1 hits (HSPs):     __________________________________              
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 274
                       0       50       100      150      200      250
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       45..136
   PFAM                 linker_histone: linker histone H1 and H5 61..131
   PRODOM               PD168009: H11_ARATH                      1..60
   PRODOM               PD000373: H1(14) H11(5) H12(4)           62..107
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     137..272
__________________


  Plus Strand HSPs:

 Score = 242 (85.2 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 68/180 (37%), Positives = 93/180 (51%), Frame = +1

Query:   160 SADPPLEEKE-ETKPEAKAKKTK---EPKPKKV--SRP--RNPPTHPSYEEMVKDAITSL 315
             +AD P+ +   E KP AK +KTK   E K KK   + P  R   +HP+YEEM+KDAI +L
Sbjct:    17 AADAPVTDAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTL 76

Query:   316 KEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RSSSPPENSSKSKARSSSHLPDLLXX 495
             KE+TGSSQYAI KFIEEK K+LPP F+KLLL + +         K KA  S  LP     
Sbjct:    77 KERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLVKVKA--SFKLPSASAK 134

Query:   496 XXXXXXRQRRKSPQLPSPSLSLSPGPLRKPRILRQLNRRHQLSP----SQLLSLKPKLQP 663
                      + +P    P+        RK     +  +   + P    ++ ++ K K +P
Sbjct:   135 ASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKP 194

Query:   664 RP 669
              P
Sbjct:   195 VP 196

 Score = 184 (64.8 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
 Identities = 49/106 (46%), Positives = 55/106 (51%), Frame = +3

Query:   408 LPLKKLVAAGKLVKVKGSFKLPPTRPAAXX----XXXXXPAKKKKPAAAKSKPKPKPRPA 575
             L LK+LVA+GKLVKVK SFKLP     A           PAKKK    A +K K K   A
Sbjct:   108 LNLKRLVASGKLVKVKASFKLPSASAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAA 167

Query:   576 AKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
             +KAK T A K K  A  K  AK KAK   +A  AA  +     KPK
Sbjct:   168 SKAKKTIAVKPKTAAAKKVTAKAKAKPVPRATAAATKRKAVDAKPK 213

 Score = 175 (61.6 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
 Identities = 51/104 (49%), Positives = 57/104 (54%), Frame = +3

Query:   408 LPLKKLVAAGKLVKVKGSFKLPPTRPAAXX----XXXXXPAKKKKPAAAKSKPKPKPRPA 575
             L LK+LVA+GKLVKVK SFKLP     A           PAKKK    A +K K K   A
Sbjct:   108 LNLKRLVASGKLVKVKASFKLPSASAKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAA 167

Query:   576 AKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             +KAK T A K      PK AA  K  A AKAKP   P+A AA   + A
Sbjct:   168 SKAKKTIAVK------PKTAAAKKVTAKAKAKPV--PRATAAATKRKA 207

 Score = 122 (42.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
 Identities = 40/117 (34%), Positives = 49/117 (41%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKS 548
             A+A+S +     S P KK  A   + K K                    A KK  A AK+
Sbjct:   133 AKASSPKAAAEKSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAAKKVTAKAKA 192

Query:   549 KPKPKPRPAAKAKDTKATKSKAPAKPKPAAKP-KAKAPAKAKPAAKPK-AXAAXKPK 713
             KP P+   AA  +     K KA A+P  AAK  K  +PAK   AA  K A  A K K
Sbjct:   193 KPVPRATAAATKRKAVDAKPKAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKK 249

 Score = 117 (41.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
 Identities = 38/100 (38%), Positives = 45/100 (45%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             L K+ A+ KL         P  + AA       PAKKK    A +K K K   A+KAK T
Sbjct:   119 LVKVKASFKLPSASAKASSP--KAAAEKSA---PAKKKPATVAVTKAKRKVAAASKAKKT 173

Query:   594 KATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
              A K K  A  K  AK KAK   +A  AA  +     KPK
Sbjct:   174 IAVKPKTAAAKKVTAKAKAKPVPRATAAATKRKAVDAKPK 213

 Score = 115 (40.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
 Identities = 48/113 (42%), Positives = 55/113 (48%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAK- 545
             A+A+S +     S P KK  A   + K K        + AA        A K K AAAK 
Sbjct:   133 AKASSPKAAAEKSAPAKKKPATVAVTKAK-------RKVAAASKAKKTIAVKPKTAAAKK 185

Query:   546 --SKPKPKPRPAAKAKDTKATKSKA-PAKPKPAAKP-KAKAPAKAKPAAKPKAXAAXK 707
               +K K KP P A A    ATK KA  AKPK  A+P KA   AK    AK KA AA K
Sbjct:   186 VTAKAKAKPVPRATAA---ATKRKAVDAKPKAKARPAKAAKTAKVTSPAK-KAVAATK 239

 Score = 104 (36.6 bits), Expect = 0.0062, Sum P(2) = 0.0062
 Identities = 36/99 (36%), Positives = 42/99 (42%), Frame = +3

Query:   429 AAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKATKS 608
             A  K ++ K   +LPPT                K    K+  K  P  +AKA   KA   
Sbjct:    86 AIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFK-LPSASAKASSPKAAAE 143

Query:   609 K-APAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
             K APAK KPA     KA  K   A+K K   A KPK A A
Sbjct:   144 KSAPAKKKPATVAVTKAKRKVAAASKAKKTIAVKPKTAAA 183

 Score = 97 (34.1 bits), Expect = 0.043, Sum P(2) = 0.042
 Identities = 37/105 (35%), Positives = 47/105 (44%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             AA+++ ++  ++ +K   AA K V  K   K  P   AA        A K+K  A  +KP
Sbjct:   165 AAASKAKK--TIAVKPKTAAAKKVTAKAKAKPVPRATAA--------ATKRK--AVDAKP 212

Query:   555 KPKPRPAAKAKDTKATK--SKAPAKPKPAAKPKAKAPAKAKPAAKPK 689
             K K RPA  AK  K T    KA A  K  A    K     K   KPK
Sbjct:   213 KAKARPAKAAKTAKVTSPAKKAVAATKKVATVATKKKTPVKKVVKPK 259

 Score = 94 (33.1 bits), Expect = 0.099, Sum P(2) = 0.094
 Identities = 38/102 (37%), Positives = 49/102 (48%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK---KPA-AA 542
             AA+++ ++  ++ +K   AA K V  K   K  P   AA        AK K   +PA AA
Sbjct:   165 AAASKAKK--TIAVKPKTAAAKKVTAKAKAKPVPRATAAATKRKAVDAKPKAKARPAKAA 222

Query:   543 KS----KPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-KAPAK 665
             K+     P  K   A K   T ATK K P K     KPK  K+PAK
Sbjct:   223 KTAKVTSPAKKAVAATKKVATVATKKKTPVKK--VVKPKTVKSPAK 266

 Score = 40 (14.1 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
 Identities = 9/22 (40%), Positives = 11/22 (50%), Frame = +1

Query:   118 EEPTVAVEPAPEPASADPPLEE 183
             E+ TVA  P     S+ P  EE
Sbjct:    46 EKKTVAAAPKKRTVSSHPTYEE 67


 >gi|729653|sp|P40263|H11_GLYBA  HISTONE H1-I >gi|457118|gb|AAA62320.1| (L29101)
            histone H1-I [Glyptotendipes barbipes] >gi|1093318|prf||2103263A
            histone H1:ISOTYPE=I [Glyptotendipes barbipes]
            Length = 233

Frame  3 hits (HSPs):                        _____________________________
Frame  1 hits (HSPs):   ______________________      _________             
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       35..131
   PFAM                 linker_histone: linker histone H1 and H5 51..126
   PRODOM               PD007955: H11(2) H1E(2)                  1..50
   PRODOM               PD000373: H1(14) H11(5) H12(4)           52..99
   PRODOM               PD188803: H11(2)                         101..124
   PRODOM               PD053161: H11_GLYBA                      126..161
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     163..230
__________________


  Plus Strand HSPs:

 Score = 144 (50.7 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 48/114 (42%), Positives = 57/114 (50%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPT-----RPAAXXXXXXXPAKKKKPAAAKSKPKPK 563
             LK  V  G++++VKG     SFK+PP      RP +         K +     K     K
Sbjct:   100 LKGAVLKGEVLQVKGTGASGSFKMPPPAKKVDRPESAPKKKATKTKTRVERKEKKVVAKK 159

Query:   564 PRPAAKAKDTKATKSKAPAKP---KPAAKPKAKAPA-KAKP---AAKPKAXAAXKPKP 716
             P+PA + K  K    KA AKP   K AAKP AK PA KA P   AAKPKA    KP P
Sbjct:   160 PKPAVEKKAAKPAAKKAAAKPAAKKAAAKPAAKKPAAKASPKKAAAKPKA----KPTP 213

 Score = 141 (49.6 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 44/101 (43%), Positives = 55/101 (54%), Frame = +1

Query:   103 ISMATEEPTVAVEPAPEPAS-ADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPS 279
             +S +  E    VE AP+ AS A  P +     K   KAKK    KPKK   P+  PTHP 
Sbjct:     1 MSDSAPEIETPVEEAPKAASPAKSPAKSPGRAK---KAKKDGSDKPKK---PKAIPTHPP 54

Query:   280 YEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK----QLPPNFKKLL 405
               EMV +A+ +L EK GSS  AI KF+   +K    +L P  KK L
Sbjct:    55 VSEMVVNALKTLNEKGGSSVIAIKKFLVATYKVEIEKLLPFIKKFL 100

 Score = 133 (46.8 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
 Identities = 47/120 (39%), Positives = 52/120 (43%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPT-----RPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAA 578
             LK  V   K     GSFK+PP      RP +         K +     K     KP+PA 
Sbjct:   105 LKGEVLQVKGTGASGSFKMPPPAKKVDRPESAPKKKATKTKTRVERKEKKVVAKKPKPAV 164

Query:   579 KAKDTKATKSKAPAKP---KPAAKPKAKAPA-KAKP---AAKPKA------XAAXKPKPA 719
             + K  K    KA AKP   K AAKP AK PA KA P   AAKPKA          KPK A
Sbjct:   165 EKKAAKPAAKKAAAKPAAKKAAAKPAAKKPAAKASPKKAAAKPKAKPTPKKSTPAKPKAA 224

 Score = 120 (42.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
 Identities = 39/72 (54%), Positives = 41/72 (56%), Frame = +3

Query:   516 AKKKKPAAAKSKPKPKPR-----PAAKAKDTK--ATKSKAPAKPKPAA-KPKAK-APAKA 668
             AKK KPA  K   KP  +     PAAK    K  A K  A A PK AA KPKAK  P K+
Sbjct:   157 AKKPKPAVEKKAAKPAAKKAAAKPAAKKAAAKPAAKKPAAKASPKKAAAKPKAKPTPKKS 216

Query:   669 KPAAKPKAXAAXKP 710
              PA KPKA AA KP
Sbjct:   217 TPA-KPKA-AARKP 228

 Score = 120 (42.2 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
 Identities = 37/102 (36%), Positives = 46/102 (45%), Frame = +3

Query:   387 ELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPA-AXXXXXXXPAKKKKPAAAKSKPKPK 563
             ++    S P KK       V+ K   K+   +P  A       PA KK  A   +K K  
Sbjct:   129 KVDRPESAPKKKATKTKTRVERKEK-KVVAKKPKPAVEKKAAKPAAKKAAAKPAAK-KAA 186

Query:   564 PRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKA 692
              +PAAK    KA+  KA AKPK    PK   PAK K AA+  A
Sbjct:   187 AKPAAKKPAAKASPKKAAAKPKAKPTPKKSTPAKPKAAARKPA 229

 Score = 105 (37.0 bits), Expect = 3.7e-15, Sum P(2) = 3.7e-15
 Identities = 33/79 (41%), Positives = 40/79 (50%), Frame = +3

Query:   417 KKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKK--KPAAAKSKPKPKPRPAAKAKD 590
             KK+VA     K K + +    +PAA        AKK   KPAA K   K  P+ AA    
Sbjct:   153 KKVVAK----KPKPAVEKKAAKPAAKKAAAKPAAKKAAAKPAAKKPAAKASPKKAAAKPK 208

Query:   591 TKATKSKA-PAKPKPAAKPKAK 653
              K T  K+ PAKPK AA+  AK
Sbjct:   209 AKPTPKKSTPAKPKAAARKPAK 230

 Score = 93 (32.7 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
 Identities = 30/72 (41%), Positives = 34/72 (47%), Frame = +3

Query:   432 AGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDTKATKSK 611
             A K    K + K P  + AA       PA K  P  A +KPK KP P    K T A K K
Sbjct:   168 AAKPAAKKAAAK-PAAKKAAAKPAAKKPAAKASPKKAAAKPKAKPTPK---KSTPA-KPK 222

Query:   612 APAKPKPAAKPK 647
             A A+ KPA K K
Sbjct:   223 AAAR-KPAKKSK 233

 Score = 56 (19.7 bits), Expect = 0.0016, Sum P(2) = 0.0016
 Identities = 16/39 (41%), Positives = 21/39 (53%), Frame = +1

Query:   154 PASADPPLEEKEETKPEAKAKKT--KEPKP---KKVSRP 255
             P SA      K +T+ E K KK   K+PKP   KK ++P
Sbjct:   133 PESAPKKKATKTKTRVERKEKKVVAKKPKPAVEKKAAKP 171


 >gi|729654|sp|P40266|H11_GLYSA  HISTONE H1-I >gi|457124|gb|AAA62323.1| (L29104)
            histone H1-I [Glyptotendipes salinus]
            Length = 233

Frame  3 hits (HSPs):                        _____________________________
Frame  1 hits (HSPs):   ______________________      _________             
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200

  Plus Strand HSPs:

 Score = 146 (51.4 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 52/114 (45%), Positives = 60/114 (52%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKKKKPAAAKS---KPKP--- 560
             LK  V  G++++VKG     SFK+PP  PA          KKK P   +    K K    
Sbjct:   100 LKGAVLKGEVLQVKGTGASGSFKMPP--PAKKVDKPEAAPKKKAPRPKREIEKKEKKVVA 157

Query:   561 -KPRPAAKAKDTKATKSKAPAKP---KPAAKPKAKAPA-KAKP---AAKPKAXAAXKPKP 716
              KP+PA + K  K    KA AKP   K AAKP AK PA KA P   AAKPKA    KP P
Sbjct:   158 KKPKPAVEKKAAKPAAKKAVAKPAAKKAAAKPAAKEPAAKASPKKAAAKPKA----KPTP 213

 Score = 140 (49.3 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 52/120 (43%), Positives = 56/120 (46%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKS---KPKP----KPRP 572
             LK  V   K     GSFK+PP  PA          KKK P   +    K K     KP+P
Sbjct:   105 LKGEVLQVKGTGASGSFKMPP--PAKKVDKPEAAPKKKAPRPKREIEKKEKKVVAKKPKP 162

Query:   573 AAKAKDTKATKSKAPAKP---KPAAKPKAKAPA-KAKP---AAKPKA------XAAXKPK 713
             A + K  K    KA AKP   K AAKP AK PA KA P   AAKPKA        A KPK
Sbjct:   163 AVEKKAAKPAAKKAVAKPAAKKAAAKPAAKEPAAKASPKKAAAKPKAKPTPKKSTAAKPK 222

Query:   714 PA 719
              A
Sbjct:   223 AA 224

 Score = 138 (48.6 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
 Identities = 43/101 (42%), Positives = 55/101 (54%), Frame = +1

Query:   103 ISMATEEPTVAVEPAPEPAS-ADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPS 279
             +S +  E    VE AP+ A+ A  P +     K   KAKK    KPKK   P+  PTHP 
Sbjct:     1 MSDSAPEIETPVEEAPKAATPAKSPAKSPGRAK---KAKKDGSDKPKK---PKAIPTHPP 54

Query:   280 YEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK----QLPPNFKKLL 405
               EMV +A+ +L EK GSS  AI KF+   +K    +L P  KK L
Sbjct:    55 VSEMVVNALKTLNEKGGSSVIAIKKFLVATYKVEIEKLLPFIKKFL 100

 Score = 138 (48.6 bits), Expect = 4.0e-18, Sum P(2) = 4.0e-18
 Identities = 45/102 (44%), Positives = 55/102 (53%), Frame = +3

Query:   414 LKKLVAAGKLVKVKG-----SFKLPPTRPAAXXXXXXXPAKK-KKPAAAKSKPKPKPRPA 575
             LK  V  G++++VKG     SFK+PP            PAKK  KP AA  K  P+P+  
Sbjct:   100 LKGAVLKGEVLQVKGTGASGSFKMPP------------PAKKVDKPEAAPKKKAPRPKRE 147

Query:   576 AKAKDTKATKSKA-PAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
              + K+ K    K  PA  K AAKP AK  A AKPAAK  A      +PA
Sbjct:   148 IEKKEKKVVAKKPKPAVEKKAAKPAAKK-AVAKPAAKKAAAKPAAKEPA 195

 Score = 122 (42.9 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 33/64 (51%), Positives = 36/64 (56%), Frame = +3

Query:   519 KKKKPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXA 698
             K  KPAA K+  KP  + AA     K   +KA  K K AAKPKAK   K   AAKPKA A
Sbjct:   167 KAAKPAAKKAVAKPAAKKAAAKPAAKEPAAKASPK-KAAAKPKAKPTPKKSTAAKPKA-A 224

Query:   699 AXKP 710
             A KP
Sbjct:   225 AKKP 228

 Score = 116 (40.8 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
 Identities = 40/105 (38%), Positives = 52/105 (49%), Frame = +3

Query:   387 ELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPA-AXXXXXXXPAKKK---KPAAAKSKP 554
             ++ +  + P KK     + ++ K   K+   +P  A       PA KK   KPAA K+  
Sbjct:   129 KVDKPEAAPKKKAPRPKREIEKKEK-KVVAKKPKPAVEKKAAKPAAKKAVAKPAAKKAAA 187

Query:   555 KPKPR-PAAKAKDTKAT-KSKAPAKPKPAAKPKAKAPAKAKPAAKPK 689
             KP  + PAAKA   KA  K KA   PK +   K KA AK KPA K K
Sbjct:   188 KPAAKEPAAKASPKKAAAKPKAKPTPKKSTAAKPKAAAK-KPAKKSK 233

 Score = 103 (36.3 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 29/68 (42%), Positives = 35/68 (51%), Frame = +3

Query:   525 KKPAAAKSKPKPKPRPAAKA----KDTKATKSKAPAK-PKPAAKPKAKAPAKAKPAAKPK 689
             K P  AK   KP+  P  KA    ++ +  + K  AK PKPA + KA  PA  K  AKP 
Sbjct:   122 KMPPPAKKVDKPEAAPKKKAPRPKREIEKKEKKVVAKKPKPAVEKKAAKPAAKKAVAKPA 181

Query:   690 AX-AAXKP 710
             A  AA KP
Sbjct:   182 AKKAAAKP 189

 Score = 52 (18.3 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
 Identities = 16/39 (41%), Positives = 21/39 (53%), Frame = +1

Query:   139 EPAPEPASADPPLE-EKEETKPEAKAKKTKEPKPKKVSRP 255
             E AP+  +  P  E EK+E K    AKK K    KK ++P
Sbjct:   134 EAAPKKKAPRPKREIEKKEKK--VVAKKPKPAVEKKAAKP 171


 >gi|2623960|emb|CAA73171.1|  (Y12599) histone H1 [Apium graveolens]
            Length = 302

Frame  3 hits (HSPs):                    _________________________________
Frame  1 hits (HSPs):   _____________________________________             
                        __________________________________________________
Database sequence:     |        |       |       |       |        |       || 302
                       0       50     100     150     200      250     300

  Plus Strand HSPs:

 Score = 241 (84.8 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 74/216 (34%), Positives = 104/216 (48%), Frame = +1

Query:    97 PLISM--ATEEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNP-- 264
             P++ M    EE  V V  APE A+  PP E+     P    KK KE KPKK + PR P  
Sbjct:     7 PIVPMEGVEEEVPVTVTEAPEEAA--PPAEDPA---P----KKGKELKPKKAAAPRKPRS 57

Query:   265 -PTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHKQLPPNFKKLLLYH*RS------ 423
              P HP Y EM+ DAITSLKE+TGSSQ AI KF+E KHK LP  F+K+L  + +       
Sbjct:    58 APAHPPYLEMITDAITSLKERTGSSQQAIQKFLEAKHKDLPAVFRKMLSNNLKKLVAAGK 117

Query:   424 -----SSPPENSSKSKARSSSHLPDLLXXXXXXXXRQRRKSPQLPSPSLSLSP---GPLR 579
                  +S    S+KS A +                  ++K+   P    + +P    P+ 
Sbjct:   118 LVKVKASYKLPSAKSSAPAKKKPAAAPAKKKAAAAPAKKKTAAAPKKKAAAAPKKKAPVA 177

Query:   580 KPRILRQLNRRHQLSPSQLLSLKPKLQPRPNPLLNQRLXLLXSPS 714
             K +   +   +  + P    ++KPK +P   P    +      P+
Sbjct:   178 KAKPAAKPKAKAVVKPKAKAAVKPKAKPAAKPAAKAKPAAKAKPA 222

 Score = 224 (78.9 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 61/108 (56%), Positives = 65/108 (60%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             LKKLVAAGKLVKVK S+KLP  + +A        A  KK AAA +  K K   A K K  
Sbjct:   109 LKKLVAAGKLVKVKASYKLPSAKSSAPAKKKPAAAPAKKKAAA-APAKKKTAAAPKKKAA 167

Query:   594 KATKSKAP-AKPKPAAKPKAKAPAK--AKPAAKPKAXAAXKP----KPA 719
              A K KAP AK KPAAKPKAKA  K  AK A KPKA  A KP    KPA
Sbjct:   168 AAPKKKAPVAKAKPAAKPKAKAVVKPKAKAAVKPKAKPAAKPAAKAKPA 216

 Score = 220 (77.4 bits), Expect = 3.6e-17, P = 3.6e-17
 Identities = 60/104 (57%), Positives = 65/104 (62%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAKAKDT 593
             LKKLVAAGKLVKVK S+KLP  + +A       PAKKK PAAA +K K    PA K    
Sbjct:   109 LKKLVAAGKLVKVKASYKLPSAKSSA-------PAKKK-PAAAPAKKKAAAAPAKK---- 156

Query:   594 KATKSKAPAKPKPAAKPKAKAP-AKAKPAAKPKAXAAXKPKPAXA 725
                K+ A  K K AA PK KAP AKAKPAAKPKA A  KPK   A
Sbjct:   157 ---KTAAAPKKKAAAAPKKKAPVAKAKPAAKPKAKAVVKPKAKAA 198

 Score = 173 (60.9 bits), Expect = 6.9e-12, P = 6.9e-12
 Identities = 58/114 (50%), Positives = 63/114 (55%), Frame = +3

Query:   378 ASTELQEA-SSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKP 554
             AS +L  A SS P KK  AA    K K +      + AA        A KKK   AK+KP
Sbjct:   123 ASYKLPSAKSSAPAKKKPAAAP-AKKKAAAAPAKKKTAAAPKKKAAAAPKKKAPVAKAKP 181

Query:   555 KPKPRPAAKAKDTKATKSKAPAKPK--PAAKPKAKA-PA-KAKPAAKPKAXAAXKPKPA 719
               KP    KAK     K+KA  KPK  PAAKP AKA PA KAKPAAKPKA    K KPA
Sbjct:   182 AAKP----KAKAVVKPKAKAAVKPKAKPAAKPAAKAKPAAKAKPAAKPKA----KAKPA 232

 Score = 151 (53.2 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 48/125 (38%), Positives = 63/125 (50%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAA--- 539
             A++++   ++ ++ P KK  AA    K   +    P + AA       P  K KPAA   
Sbjct:   130 AKSSAPAKKKPAAAPAKKKAAAAPAKKKTAA---APKKKAAAAPKKKAPVAKAKPAAKPK 186

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKP----KPAAKPKAKA-PAK-AKPAAKPKAXAA 701
             AK+  KPK + A K K   A K  A AKP    KPAAKPKAKA PAK A+ + +      
Sbjct:   187 AKAVVKPKAKAAVKPKAKPAAKPAAKAKPAAKAKPAAKPKAKAKPAKVARTSTRTTPGKK 246

Query:   702 XKPKPAXA 725
                KPA A
Sbjct:   247 APAKPAAA 254

 Score = 135 (47.5 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 48/117 (41%), Positives = 56/117 (47%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLV-KVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAK 545
             A A   +   A + P  K  A   +  K K + K P  +PAA       PA K KPAA  
Sbjct:   167 AAAPKKKAPVAKAKPAAKPKAKAVVKPKAKAAVK-PKAKPAAKPAAKAKPAAKAKPAA-- 223

Query:   546 SKPKPKPRPAAKAK-DTKATKSK-APAKPKPAAKPKAKAPAKAKPAAKP--KAXAAXKPK 713
              KPK K +PA  A+  T+ T  K APAKP  AA P  KA    K  A P  KA    K  
Sbjct:   224 -KPKAKAKPAKVARTSTRTTPGKKAPAKP--AAAPVKKATPVKKATATPVKKAAPVKKAA 280

Query:   714 PA 719
             PA
Sbjct:   281 PA 282

 Score = 95 (33.4 bits), Expect = 0.33, P = 0.28
 Identities = 43/122 (35%), Positives = 53/122 (43%), Frame = +3

Query:   369 AQAASTELQEASSLPLKKLVAAGKLVKVKGSFK-LPPTRPAAXXXXXXXPAKKKKPA-AA 542
             A+A      +A ++   K  AA K  K K + K     +PAA       P  K KPA  A
Sbjct:   177 AKAKPAAKPKAKAVVKPKAKAAVK-PKAKPAAKPAAKAKPAAKAKPAAKPKAKAKPAKVA 235

Query:   543 KSKPKPKPRPAAKAKDT-----KATK-SKAPAKP-KPAAKPKAKAPAKAKPAAKP-KAXA 698
             ++  +  P   A AK       KAT   KA A P K AA  K  APAK K    P K  +
Sbjct:   236 RTSTRTTPGKKAPAKPAAAPVKKATPVKKATATPVKKAAPVKKAAPAKGKSVKTPVKRTS 295

Query:   699 AXK 707
             A K
Sbjct:   296 ARK 298

 Score = 89 (31.3 bits), Expect = 1.6, P = 0.80
 Identities = 38/110 (34%), Positives = 47/110 (42%), Frame = +3

Query:   354 VHRGEAQAASTELQEASSLPLKKLVAAGKLVKV-KGSFKLPPTRPAAXXXXXXXPAKKK- 527
             V + +A+AA     + ++ P  K   A K     K   K  P +  A       P KK  
Sbjct:   190 VVKPKAKAAVKPKAKPAAKPAAKAKPAAKAKPAAKPKAKAKPAK-VARTSTRTTPGKKAP 248

Query:   528 -KPAAAKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKA-KAPAKAKPAAK 683
              KPAAA   P  K  P  KA  T   K+ AP K    AK K+ K P K   A K
Sbjct:   249 AKPAAA---PVKKATPVKKATATPVKKA-APVKKAAPAKGKSVKTPVKRTSARK 298


 >gi|84445|pir||S01817  histone H1.1 - Caenorhabditis elegans
            Length = 207

Frame  3 hits (HSPs):                       ______________________________
Frame  1 hits (HSPs):      ______________                                 
                        __________________________________________________
Database sequence:     |           |           |           |            | | 207
                       0          50         100         150          200

  Plus Strand HSPs:

 Score = 143 (50.3 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
 Identities = 50/118 (42%), Positives = 59/118 (50%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGS-----FKLPPTRPAAXX-XXXXXPAKKKKPAAAKS---KPKPKP 566
             LK+ V +  LV+ KGS     F++P    AA        PA  KKPAAAK    + K K 
Sbjct:    87 LKRGVTSKALVQAKGSGANGRFRVPEKAAAAKKPAAAKKPAAAKKPAAAKKATGEKKAKK 146

Query:   567 RPAAKAK-----DTKATKSKAPAK-PKPAAKPKAKAPAK-AKPAAKPKAXAAXKPKPA 719
               AAK K     D K  K+K+P K  KPAAK  AK+PAK A P    K  A    KPA
Sbjct:   147 PAAAKPKKAATGDKKVKKAKSPKKVAKPAAKKVAKSPAKKAAPKKIAKPAAKKAAKPA 204

 Score = 131 (46.1 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
 Identities = 25/56 (44%), Positives = 36/56 (64%), Frame = +1

Query:   208 KAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQYAIAKFIEEKHK 375
             KAK  K  KP KV++ + P  HP Y   +K+AI  LK++ G+S+ AI KFI + +K
Sbjct:    16 KAKAAKAAKPTKVAKAKAPVAHPPYINTIKEAIKQLKDRKGASKQAILKFISQNYK 71

 Score = 127 (44.7 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 39/78 (50%), Positives = 43/78 (55%), Frame = +3

Query:   513 PAKKKKPAAAKS---KPKPKPRPAAKAK-----DTKATKSKAPAK-PKPAAKPKAKAPAK 665
             PA  KKPAAAK    + K K   AAK K     D K  K+K+P K  KPAAK  AK+PAK
Sbjct:   126 PAAAKKPAAAKKATGEKKAKKPAAAKPKKAATGDKKVKKAKSPKKVAKPAAKKVAKSPAK 185

Query:   666 A---KPAAKPKAXAAXKP 710
                 K  AKP A  A KP
Sbjct:   186 KAAPKKIAKPAAKKAAKP 203

 Score = 125 (44.0 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
 Identities = 38/85 (44%), Positives = 43/85 (50%), Frame = +3

Query:   480 RPAAXX--XXXXXPAKKKKPAAAKSKPKP---KPRPAAKAKDTKATKSKAPAK-PKPAAK 641
             +PAA         PA  KK    K   KP   KP+ AA   D K  K+K+P K  KPAAK
Sbjct:   119 KPAAAKKPAAAKKPAAAKKATGEKKAKKPAAAKPKKAATG-DKKVKKAKSPKKVAKPAAK 177

Query:   642 PKAKAPAKA---KPAAKPKAXAAXKP 710
               AK+PAK    K  AKP A  A KP
Sbjct:   178 KVAKSPAKKAAPKKIAKPAAKKAAKP 203

 Score = 94 (33.1 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
 Identities = 39/99 (39%), Positives = 45/99 (45%), Frame = +3

Query:   372 QAASTELQEASSLPLK-KLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKS 548
             +AA+ +   A+  P   K  AA K  K  G  K    +PAA          KK   A KS
Sbjct:   113 KAAAAKKPAAAKKPAAAKKPAAAK--KATGEKKAK--KPAAAKPKKAATGDKKVKKA-KS 167

Query:   549 KPKPKPRPAAKAKDTKATKSKAPAK-PKPAAKPKAKAPAKA 668
              PK   +PAAK       K  AP K  KPAAK  AK  AKA
Sbjct:   168 -PKKVAKPAAKKVAKSPAKKAAPKKIAKPAAKKAAKPAAKA 207

 Score = 82 (28.9 bits), Expect = 9.2e-12, Sum P(2) = 9.2e-12
 Identities = 27/52 (51%), Positives = 27/52 (51%), Frame = +3

Query:   564 PRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPKPA 719
             P  AA AK   A K  A AK KPAA  KA    KAK   KP   AA KPK A
Sbjct:   111 PEKAAAAKKPAAAKKPAAAK-KPAAAKKATGEKKAK---KP---AAAKPKKA 155


 >gi|729664|sp|P40277|H1C_CHITE  HISTONE H1C >gi|457105|gb|AAA21717.1| (L29109)
            histone H1c [Chironomus tentans]
            Length = 221

Frame  3 hits (HSPs):                      _______________________________
Frame  1 hits (HSPs):   _________________       _____________             
Annotated Domains:          _______________________ ______________________
                        __________________________________________________
Database sequence:     |           |          |          |           |    | 221
                       0          50        100        150         200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       22..118
   PFAM                 linker_histone: linker histone H1 and H5 38..113
   PRODOM               PD000373: H1(14) H11(5) H12(4)           39..86
   PRODOM               PD186682:                                88..110
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     127..220
__________________


  Plus Strand HSPs:

 Score = 141 (49.6 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
 Identities = 50/114 (43%), Positives = 56/114 (49%), Frame = +3

Query:   414 LKKLVAAGKLVKVKGSFKLPPTR-PAAXXXXXXXPAKKKKPAAAKSKP------KPKPRP 572
             LK  V  G+L++ KG   L   + PAA          +KKP  A +KP      K K   
Sbjct:    87 LKSAVEKGQLLQTKGKGALGSFKLPAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVKKTI 146

Query:   573 AAKAKDTKATKSKAP-AKP--KPAA-KPKAKAPAKAKPAAKPKAXAAXKPKPAXA 725
             A K K   ATK K P AK   KPAA KP AK  A  KP A PK  AA KPK A A
Sbjct:   147 AKKPKAATATKIKKPVAKTTKKPAAAKPAAKKAAP-KPKAAPKPKAAPKPKKAAA 200

 Score = 140 (49.3 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
 Identities = 31/72 (43%), Positives = 43/72 (59%), Frame = +1

Query:   163 ADPPLEEKE-ETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMVKDAITSLKEKTGSSQ 339
             +DP +E          KAKK K+PK  K  +P+ P THP   EMV +A+ +LKE+ GSS 
Sbjct:     2 SDPAVETAPVAVASPGKAKKEKKPKSDKPKKPKAPRTHPPVSEMVFNAVKTLKERGGSSL 61

Query:   340 YAIAKFIEEKHK 375
              AI KF+  ++K
Sbjct:    62 QAIKKFLIAQYK 73

 Score = 131 (46.1 bits), Expect = 5.9e-18, Sum P(2) = 5.9e-18
 Identities = 50/108 (46%), Positives = 53/108 (49%), Frame = +3

Query:   420 KLVAAGKLVKV-KGSFKLPPTRPAAXXXXXXXPAKK---KKPAAAKS----KP--KPKPR 569
             KL AA K  KV K + K P    A          KK   KKP AA +    KP  K   +
Sbjct:   109 KLPAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVKKTIAKKPKAATATKIKKPVAKTTKK 168

Query:   570 PAAKAKDTK--ATKSKAPAKPKPAAKPK-AKAPAKAKPAAKPKAXAAXKP 710
             PAA     K  A K KA  KPK A KPK A AP   KPAAKPKA  A KP
Sbjct:   169 PAAAKPAAKKAAPKPKAAPKPKAAPKPKKAAAPKAKKPAAKPKA--AKKP 216

 Score = 125 (44.0 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
 Identities = 43/102 (42%), Positives = 53/102 (51%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPK 557
             A+ +  +A    +KK +A  K  K   + K+   +P A       PA  K PAA K+ PK
Sbjct:   130 AAAKPSKAGEKKVKKTIA--KKPKAATATKIK--KPVAKTTKK--PAAAK-PAAKKAAPK 182

Query:   558 PKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAK 683
             PK  P  KA   K  K+ AP   KPAAKPKA   AK KPAAK
Sbjct:   183 PKAAPKPKAAP-KPKKAAAPKAKKPAAKPKA---AK-KPAAK 219

 Score = 125 (44.0 bits), Expect = 2.5e-17, Sum P(2) = 2.5e-17
 Identities = 47/103 (45%), Positives = 53/103 (51%), Frame = +3

Query:   393 QEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKK--KKPAAAKSKPKPKP 566
             ++A++ P K    AG+  KVK +    P   AA       P  K  KKPAAAK   K K 
Sbjct:   128 KKAAAKPSK----AGEK-KVKKTIAKKPK--AATATKIKKPVAKTTKKPAAAKPAAK-KA 179

Query:   567 RPAAKAKDTKATKSKAPAKPKPAAKPKAKAPA-KAKPAAKPKAXAA 701
              P  KA    A K KA  KPK AA PKAK PA K K A KP A  A
Sbjct:   180 APKPKA----APKPKAAPKPKKAAAPKAKKPAAKPKAAKKPAAKKA 221

 Score = 66 (23.2 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
 Identities = 24/69 (34%), Positives = 31/69 (44%), Frame = +3

Query:   375 AASTELQEASSLPLKKLVAAGKLVKVKGSF-KLPPTRPAAXXXXXXXPAKKKKPAAAKSK 551
             A +T++++  +   KK  AA    K      K  P   AA         K KKPAA   K
Sbjct:   153 ATATKIKKPVAKTTKKPAAAKPAAKKAAPKPKAAPKPKAAPKPKKAAAPKAKKPAA---K 209

Query:   552 PKPKPRPAAK 581
             PK   +PAAK
Sbjct:   210 PKAAKKPAAK 219

 Score = 54 (19.0 bits), Expect = 3.7, Sum P(2) = 0.98
 Identities = 17/54 (31%), Positives = 27/54 (50%), Frame = +1

Query:    94 FPLISMATEEPTVA-VEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRP 255
             F L + A +E  V   E  P+ A+A P    +++ K +  AKK K     K+ +P
Sbjct:   108 FKLPAAAKKEKVVKKTEKKPKKAAAKPSKAGEKKVK-KTIAKKPKAATATKIKKP 161


 >gi|121950|sp|P23444|H1_MAIZE  HISTONE H1 >gi|7439629|pir||S26826 histone H1 -
            maize >gi|22321|emb|CAA40362.1| (X57077) H1 histone [Zea mays]
            Length = 246

Frame  3 hits (HSPs):              _______________________________________
Frame  1 hits (HSPs):    ________________________________________         
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |          |         |         |         | 246
                       0        50        100       150       200
__________________

Annotated Domains:
   DOMO                 DM00085: HISTONEH1                       32..137
   DOMO                 DM00672: HISTONEH1                       139..244
   Entrez               Domain: ASP/GLU-RICH (ACIDIC).           2..31
   Entrez               Domain: ARG/LYS-RICH (BASIC).            32..46
   Entrez               Domain: GLOBULAR.                        47..122
   PFAM                 linker_histone: linker histone H1 and H5 48..119
   PRODOM               PD000373: H1(14) H11(5) H12(4)           49..96
   PRODOM               PD000540: H1(18) O76786(11) TONB(10)     118..244
__________________


  Plus Strand HSPs:

 Score = 236 (83.1 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 74/194 (38%), Positives = 100/194 (51%), Frame = +1

Query:   115 TEEPTVAVEPAPEPASADPPLEEKEETKPEAKAKKTKEPKPKKVSRPRNPPTHPSYEEMV 294
             TE P   V+ APE A AD P     +    AKAKK   PK K+ S     PTH  Y EMV
Sbjct:     6 TETPAPLVDAAPE-APADAPAAPAADANA-AKAKKATAPK-KRAS-----PTHLPYAEMV 57

Query:   295 KDAITSLKEKTGSSQYAIAKFIEEKHK-QLPPNFKKLL------------LYH*RSSSPP 435
              +AITSLKE+TGSS YAIAKF+E+KHK +LPPNF+KLL            L   ++S   
Sbjct:    58 SEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117

Query:   436 ENSSKS--KARSSSHLPDLLXXXXXXXXRQRRKSPQLPSPSLSLSPGPLRKPRILRQLNR 609
              +++K   K +++   P           + + K+P    P+    P P  KP+ + +   
Sbjct:   118 SSATKPNPKPKAAPKKPKTGAKKPKAAAKPKAKTPAKAKPATK--PKPAAKPKAVVKPKT 175

Query:   610 RHQLSPSQLLSLKPKLQ-PRPNPL 678
               +         KPK    +P PL
Sbjct:   176 PAKPKAKPAAKAKPKTAGAKPKPL 199

 Score = 203 (71.5 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 53/104 (50%), Positives = 58/104 (55%), Frame = +3

Query:   405 SLPLKKLVAAGKLVKVKGSFKLPP-TRPAAXXXXXXXPAKKKKPAAAKSKPKPKPRPAAK 581
             ++ LKKLVA GKL KVK S+KL   T+P         P KK K  A K K   KP+    
Sbjct:    96 NVQLKKLVAGGKLTKVKNSYKLSSATKPNPKPKAA--P-KKPKTGAKKPKAAAKPKAKTP 152

Query:   582 AKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKA-XAAXKPKP 716
             AK   ATK K  AKPK   KPK  A  KAKPAAK K   A  KPKP
Sbjct:   153 AKAKPATKPKPAAKPKAVVKPKTPAKPKAKPAAKAKPKTAGAKPKP 198

 Score = 147 (51.7 bits), Expect = 8.1e-08, P = 8.1e-08
 Identities = 50/112 (44%), Positives = 55/112 (49%), Frame = +3

Query:   378 ASTELQEASSLPLKKLVAAGKLVKVKGSFKLPPT-RPAAXXXXXXXPA-----KKKKPAA 539
             A T L+E +        A  K V+ K   KLPP  R           A     K K    
Sbjct:    60 AITSLKERTG---SSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYK 116

Query:   540 AKSKPKPKPRPAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXKPK 713
               S  KP P+P A  K  K T +K   KPK AAKPKAK PAKAKPA KPK  A  KPK
Sbjct:   117 LSSATKPNPKPKAAPKKPK-TGAK---KPKAAAKPKAKTPAKAKPATKPKPAA--KPK 168

 Score = 125 (44.0 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 47/116 (40%), Positives = 55/116 (47%), Frame = +3

Query:   381 STELQEASSLPLKKLVAAGKLVKVKGSFKLPPTRPAAXXXXXXXPAKKKKPAAAKSKPKP 560
             S +L  A+  P  K  AA K  K          +P A       PA K KPAA K K   
Sbjct:   114 SYKLSSATK-PNPKPKAAPKKPKTGAKKPKAAAKPKAKTPAKAKPATKPKPAA-KPKAVV 171

Query:   561 KPRPAAKAKDTKATKSK---APAKPKPAAKPKAKAPAKAKPAAK--P-KAXAAXKPKPA 719
             KP+  AK K   A K+K   A AKPKP AK   +A A AK +AK  P K   A K  P+
Sbjct:   172 KPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKA-AKTSAKDTPGKKAPAKKAAPS 229

 Score = 117 (41.2 bits), Expect = 0.00055, P = 0.00055
 Identities = 42/104 (40%), Positives = 49/104 (47%), Frame = +3

Query:   417 KKLVAAGKLVKVKGSFKLPPT---RPAAXXXXXX---XPAKKKKPAAAKSKPKP---KPR 569
             KK  AA K  K K   K  P    +PAA          PAK K   AAK+KPK    KP+
Sbjct:   139 KKPKAAAK-PKAKTPAKAKPATKPKPAAKPKAVVKPKTPAKPKAKPAAKAKPKTAGAKPK 197

Query:   570 PAAKAKDTKATKSKAPAKPKPAAKPKAKAPAKAKPAAKPKAXAAXK 707
             P AK K  +A  +K  AK  P  K  AK  A +K AA P   A  +
Sbjct:   198 PLAK-KAGRAKAAKTSAKDTPGKKAPAKKAAPSKKAATPVRKAPSR 242

 Score = 114 (40.1 bits), Expect = 0.0013, P = 0.0013
 Identities = 35/104 (33%), Positives = 46/104 (44%), Frame = +3

Query:   396 EASSLPLKKLVAAGK-LVKVKGSFKLPPT-RPAAXXXXXXXPAKKKKPAAAKSKPKPKPR 569
             +A++ P  K  A  K   K K + K     +P         PA K KP  A +KPKP  +
Sbjct:   142 KAAAKPKAKTPAKAKPATKPKPAAKPKAVVKPKTPAKPKAKPAAKAKPKTAGAKPKPLAK 201

Query:   570 PAAKAKDTKATKSKAPAKPKPAAK--PKAKA--PAKAKPAAKPK 689
              A +AK  K +    P K  PA K  P  KA  P +  P+ K K
Sbjct:   202 KAGRAKAAKTSAKDTPGKKAPAKKAAPSKKAATPVRKAPSRKAK 245


WARNING:  HSPs involving 1789 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.93

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.322   0.134   0.402  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.341   0.144   0.497  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.314   0.131   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.358   0.161   0.637  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.335   0.148   0.499  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.341   0.150   0.526  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      241       230       10.  78 3  12 22  0.11    35
                                                    32  0.097   39
   +2      0      241       230       10.  78 3  12 22  0.11    35
                                                    32  0.097   39
   +1      0      242       230       10.  78 3  12 23  0.12    35
                                                    32  0.097   39
   -1      0      242       232       10.  78 3  12 22  0.11    35
                                                    32  0.098   39
   -2      0      241       230       10.  78 3  12 22  0.11    35
                                                    32  0.097   39
   -3      0      241       230       10.  78 3  12 22  0.11    35
                                                    32  0.097   39


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  1839
  No. of states in DFA:  595 (59 KB)
  Total size of DFA:  236 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.01s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  318.82u 1.28s 320.10t  Elapsed: 00:01:05
  Total cpu time:  319.02u 1.34s 320.36t  Elapsed: 00:01:05
  Start:  Thu Jan 17 10:06:09 2002   End:  Thu Jan 17 10:07:14 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000