R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 74 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|1172874|sp|Q08298|RD22_ARATH DEHYDRATION-RESPONSIVE PROTEIN RD22 PRECURSOR
>gi|479589|pir||S34823 dehydration-induced protein RD22 -
Arabidopsis thaliana >gi|391608|dbj|BAA01546.1| (D10703) rd22
[Arabidopsis thaliana] >gi|447134|prf||1913421A rd22 gene
[Arabidopsis thaliana]
Length = 392
Frame 2 hits (HSPs): ___________________
Frame 1 hits (HSPs): _________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 392
0 150 300
__________________
Annotated Domains:
DOMO DM02982: 118..391
Entrez Domain: 5 X APPROXIMATE REPEATS. 57..164
Entrez Repetitive region: 1. 57..75
Entrez Repetitive region: 2. 78..97
Entrez Repetitive region: 3. 100..120
Entrez Repetitive region: 4. 125..142
Entrez Repetitive region: 5. 145..164
PRODOM PD122867: RD22_ARATH 1..167
PRODOM PD004669: 169..390
__________________
Plus Strand HSPs:
Score = 244 (85.9 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
Identities = 58/129 (44%), Positives = 72/129 (55%), Frame = +1
Query: 421 RETQLHDDPNVALFFLEKDLHPGTKLNLHFTTSSNI--QATFLPRQVADSIPFSSNKVEV 594
+ETQLHDDPN ALFFLEKDL G ++N+ F + FLPR A+++PF S K
Sbjct: 163 KETQLHDDPNAALFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSE 222
Query: 595 VFNKFSVKPGSEQAXSXK--ILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKNXKXF 768
+FSV+ GSE+A K I +KV+ +EK CA S ESM DF S LGK
Sbjct: 223 TLKRFSVEAGSEEAEMMKKTIEECEARKVSG--EEKYCATSLESMVDFSVSKLGKYHVRA 280
Query: 769 PXIXEXKKRIP 801
KK P
Sbjct: 281 VSTEVAKKNAP 291
Score = 200 (70.4 bits), Expect = 9.7e-39, Sum P(2) = 9.7e-39
Identities = 58/142 (40%), Positives = 72/142 (50%), Frame = +2
Query: 86 LPIFTLL-NLALVAIHAALPPEVYWKSVLPTTPMPKAITDILYPDWVEXKSTSVNVGGKG 262
LP+ LL + +VAI A L PE YW + LP TP+P ++ ++L D+ + KST+V VG G
Sbjct: 5 LPLICLLGSFMVVAIAADLTPERYWSTALPNTPIPNSLHNLLTFDFTDEKSTNVQVGKGG 64
Query: 263 VNV--HAGKGGGGTNVNVG-----------------------GKGSGGGVNVHAGHKGKA 367
VNV H GK G GT VNVG GKG GGGV VH G GK
Sbjct: 65 VNVNTHKGKTGSGTAVNVGKGGVRVDTGKGKPGGGTHVSVGSGKGHGGGVAVHTGKPGKR 124
Query: 368 XACFCWLKVSIQLHLRFNGRLNY 436
K + +H R GR Y
Sbjct: 125 TDVGVG-KGGVTVHTRHKGRPIY 146
Score = 143 (50.3 bits), Expect = 9.2e-33, Sum P(2) = 9.2e-33
Identities = 36/69 (52%), Positives = 41/69 (59%), Frame = +2
Query: 236 TSVNVGGKGVNVHAGKG--GGGTNVNVG-GKGSGGGVNVHAGHKGKAXACFCWLKVSIQL 406
T+VNVG GV V GKG GGGT+V+VG GKG GGGV VH G GK K + +
Sbjct: 78 TAVNVGKGGVRVDTGKGKPGGGTHVSVGSGKGHGGGVAVHTGKPGKRTDVGVG-KGGVTV 136
Query: 407 HLRFNGRLNY 436
H R GR Y
Sbjct: 137 HTRHKGRPIY 146
Score = 87 (30.6 bits), Expect = 6.8e-27, Sum P(2) = 6.8e-27
Identities = 25/44 (56%), Positives = 28/44 (63%), Frame = +2
Query: 236 TSVNVG-GKG----VNVHAGKGGGGTNVNVGGKGSGGGVNVHAGHKGK 364
T V+VG GKG V VH GK G T+V VG GGV VH HKG+
Sbjct: 100 THVSVGSGKGHGGGVAVHTGKPGKRTDVGVGK----GGVTVHTRHKGR 143
Score = 43 (15.1 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 12/27 (44%), Positives = 12/27 (44%), Frame = +2
Query: 230 KSTSVNVGGKGVNVHAGKGGGGTNVNV 310
K T V VG GV VH G V V
Sbjct: 123 KRTDVGVGKGGVTVHTRHKGRPIYVGV 149
>gi|7488713|pir||T08896 Sali3-2 protein, aluminium-induced - soybean
>gi|2317900|gb|AAB66369.1| (U89693) Sali3-2 [Glycine max]
Length = 276
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): ______ _________
__________________________________________________
Database sequence: | | | | | | | 276
0 50 100 150 200 250
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 26/53 (49%), Positives = 36/53 (67%), Frame = +2
Query: 71 MEYRLLPI-FTLL-NLALVA---IHAALPPEVYWKSVLPTTPMPKAITDILYP 214
ME+R I FT+L +LAL +HA+LP E YW++V P TP+P A+ D+L P
Sbjct: 1 MEFRCSVISFTILFSLALAGESHVHASLPEEDYWEAVWPNTPIPTALRDVLKP 53
Score = 61 (21.5 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 12/32 (37%), Positives = 17/32 (53%), Frame = +1
Query: 418 QRETQLHDDPNVALFFLEKDLHPGTKLNLHFT 513
Q Q+ D FF ++DLHPG + + FT
Sbjct: 62 QLPKQIDDTQYPKTFFYKEDLHPGKTMKVQFT 93
Score = 60 (21.1 bits), Expect = 4.8e-09, Sum P(3) = 4.8e-09
Identities = 17/48 (35%), Positives = 25/48 (52%), Frame = +1
Query: 613 VKPGSEQAXSXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
+K S++ S + + KK A +EK CA S ++ F S LGKN
Sbjct: 110 IKDTSKEGYSFEEIC--IKKEAFEGEEKFCAKSLGTVIGFAISKLGKN 155
>gi|5257263|dbj|BAA81762.1| (AP000364) EST AU029260(E30024) corresponds to a
region of the predicted gene.; Similar to Arabidopsis thaliana rd22
gene. (D10703) [Oryza sativa]
Length = 413
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): ____ ________
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 413
0 150 300
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 29/98 (29%), Positives = 49/98 (50%), Frame = +1
Query: 457 LFFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQA 636
+FF E+ + G +L +F ++ FLPR+VADSIPF++ + V F V P + +A
Sbjct: 190 VFFHEEAVRVGERLPFYFPAATTSALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEA 249
Query: 637 XSXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLG 750
+ + + K CA S E++ + + LG
Sbjct: 250 AGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALG 287
Score = 74 (26.0 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 12/24 (50%), Positives = 18/24 (75%), Frame = +2
Query: 146 EVYWKSVLPTTPMPKAITDILYPD 217
EV+W++VLP +P+P A +L PD
Sbjct: 30 EVFWRAVLPESPLPDAFLRLLRPD 53
Score = 43 (15.1 bits), Expect = 1.4e-08, Sum P(3) = 1.4e-08
Identities = 14/54 (25%), Positives = 26/54 (48%), Frame = +2
Query: 209 YP-DWVEXKSTSVNVGGKGVNVHAGKGGG----GTNVNVGGKGSGGGVNVHAGHK 358
+P D+ + + + G+++ AG G G + + G+G GGG AG +
Sbjct: 72 FPFDYTDYRGSDSPTTASGLDL-AGDFGEPAPFGYDYSAQGEGGGGGAAAAAGEQ 125
Score = 39 (13.7 bits), Expect = 3.6e-08, Sum P(3) = 3.6e-08
Identities = 6/15 (40%), Positives = 10/15 (66%), Frame = +3
Query: 384 GSKSPFNYIYASTGD 428
G +PF Y Y++ G+
Sbjct: 98 GEPAPFGYDYSAQGE 112
>gi|5430766|gb|AAD43166.1|AC007504_21 (AC007504) Putative BURP domain
containing protein [Arabidopsis thaliana]
Length = 280
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | 280
0 50 100 150 200 250
Plus Strand HSPs:
Score = 140 (49.3 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 35/107 (32%), Positives = 56/107 (52%), Frame = +1
Query: 439 DDPNVALFFLEKDLHPGTKLNLHFTTSSNIQAT--FLPRQVADSIPFSSNKVEVVFNKFS 612
DDP++ ++F DL GTKL ++F +++Q L RQ AD IPF+ +K++ + + FS
Sbjct: 51 DDPSLYMYFTLNDLKLGTKLLIYFY-KNDLQKLPPLLTRQQADLIPFTKSKLDFLLDHFS 109
Query: 613 VKPGSEQAXSXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
+ S Q + K + A + K C S ES+ D +G N
Sbjct: 110 ITKDSPQGKAIKETLGHCDAKAIEGEHKFCGTSLESLIDLVKKTMGYN 157
>gi|7488443|pir||T07844 BURP domain-containing protein - rape
>gi|3098571|gb|AAC15700.1| (AF049028) BURP domain containing
protein [Brassica napus]
Length = 282
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | 282
0 50 100 150 200 250
Plus Strand HSPs:
Score = 140 (49.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 36/107 (33%), Positives = 54/107 (50%), Frame = +1
Query: 439 DDPNVALFFLEKDLHPGTKLNLHFTTSSNIQAT-FLPRQVADSIPFSSNKVEVVFNKFSV 615
+DP + +FF DL GTKL ++F + + L RQ AD IPFS + ++ + N FS+
Sbjct: 53 EDPTMYMFFKISDLKLGTKLPIYFNKNDLRKVPPLLTRQEADLIPFSESNLDFLLNHFSI 112
Query: 616 KPGSEQAXSXK--ILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
S Q + K + +FK + + K C S ESM D + N
Sbjct: 113 SKDSPQGKAMKETLKRCDFKAIEG--EYKFCGTSLESMLDLAKKTIASN 159
>gi|100102|pir||S14068 seed protein precursor - tick bean
>gi|22043|emb|CAA39696.1| (X56240) unknown seed protein [Vicia
faba]
Length = 268
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): ___________
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez domain: signal sequence 1..22
__________________
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 21/51 (41%), Positives = 30/51 (58%), Frame = +2
Query: 71 MEYRLLPIFTLLNLALVAIHAALPPEVYWKSVLPTTPMPKAITDILYPDWV 223
ME+ L + +L LA V I A E YW+S+ P TP+PK +D+L P +
Sbjct: 1 MEFAHLTVLSLFCLAFVGITATSSGEDYWQSIWPNTPLPKTFSDLLIPSGI 51
Score = 70 (24.6 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 25/56 (44%), Positives = 29/56 (51%), Frame = +1
Query: 457 LFFLEKDLHPGTKLNLHFTTS--SNIQATFLPRQ-VADSIPFSSNKVEVVFNKFSVKP 621
LFF E DLHPG NL T S S I+ RQ V DSI + +NK + F P
Sbjct: 68 LFF-EHDLHPGKNFNLGHTNSVGSIIRPFTKSRQGVTDSI-WLANKEKQSLEDFCYSP 123
>gi|119096|sp|P21746|EA87_VICFA EMBRYONIC ABUNDANT PROTEIN USP87 PRECURSOR
>gi|82001|pir||S04135 embryonic abundant protein precursor (clone
pUSP87) - tick bean >gi|22049|emb|CAA31603.1| (X13211) USP
precursor [Vicia faba]
Length = 268
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ___________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Domain: 3 X 6 AA APPROXIMATE REPEATS. 50..106
Entrez Repetitive region: 1-1. 50..55
Entrez Repetitive region: 1-2. 83..88
Entrez Repetitive region: 1-3. 101..106
Entrez Domain: 2 X APPROXIMATE REPEATS. 166..222
Entrez Repetitive region: 2-1. 166..183
Entrez Repetitive region: 2-2. 202..222
Entrez glycosylation site: POTENTIAL. 259
PRODOM PD009870: 1..79
PRODOM PD013884: 86..126
PRODOM PD004669: 128..256
__________________
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 22/48 (45%), Positives = 30/48 (62%), Frame = +2
Query: 71 MEYRLLPIFTLLNLALVAIHAALPPEVYWKSVLPTTPMPKAITDILYP 214
ME+ L + +L LA V I A P E YW+S+ P TP+PK +D+L P
Sbjct: 1 MEFAHLTVLSLFCLAFVGITATSPREDYWQSIWPNTPLPKTFSDMLIP 48
Score = 51 (18.0 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 23/56 (41%), Positives = 27/56 (48%), Frame = +1
Query: 457 LFFLEKDLHPGTKLNLHFTTS--SNIQATFLPRQ-VADSIPFSSNKVEVVFNKFSVKP 621
LFF E DLHP L T S S I+ RQ V DSI + +NK + F P
Sbjct: 68 LFF-EHDLHPRKNFILGNTNSVGSIIRPFTKSRQGVTDSI-WLANKEKQSLEDFCYSP 123
>gi|119095|sp|P21745|EA30_VICFA EMBRYONIC ABUNDANT PROTEIN VF30.1 PRECURSOR
>gi|82003|pir||S05471 embryonic abundant protein precursor (clone
USP Vf30.1) - tick bean
Length = 268
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ___________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM02982: 17..258
Entrez Domain: 3 X 6 AA APPROXIMATE REPEATS. 50..106
Entrez Repetitive region: 1-1. 50..55
Entrez Repetitive region: 1-2. 83..88
Entrez Repetitive region: 1-3. 101..106
Entrez Domain: 2 X APPROXIMATE REPEATS. 166..222
Entrez Repetitive region: 2-1. 166..183
Entrez Repetitive region: 2-2. 202..222
Entrez glycosylation site: POTENTIAL. 259
PRODOM PD009870: 1..79
PRODOM PD013884: 86..126
PRODOM PD004669: 128..256
__________________
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Frame = +2
Query: 71 MEYRLLPIFTLLNLALVAIHAALPPEVYWKSVLPTTPMPKAITDILYP 214
ME+ L + +L LA V I A E YW+S+ P TP+PK +D+L P
Sbjct: 1 MEFAHLTVLSLFCLAFVGITATSSGEDYWQSIWPNTPLPKTFSDLLIP 48
Score = 59 (20.8 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 24/56 (42%), Positives = 28/56 (50%), Frame = +1
Query: 457 LFFLEKDLHPGTKLNLHFTTS--SNIQATFLPRQ-VADSIPFSSNKVEVVFNKFSVKP 621
LFF E DLHPG L T S S I+ RQ V DSI + +NK + F P
Sbjct: 68 LFF-EHDLHPGKNFILGNTNSVGSIIRPFTKSRQGVTDSI-WLANKEKQSLEDFCYSP 123
>gi|119097|sp|P21747|EA92_VICFA EMBRYONIC ABUNDANT PROTEIN USP92 PRECURSOR
>gi|82002|pir||S04136 embryonic abundant protein precursor (clone
pUSP92) - tick bean >gi|22051|emb|CAA31602.1| (X13210) USP
precursor [Vicia faba]
Length = 268
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ___________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez Domain: 3 X 6 AA APPROXIMATE REPEATS. 50..106
Entrez Repetitive region: 1-1. 50..55
Entrez Repetitive region: 1-2. 83..88
Entrez Repetitive region: 1-3. 101..106
Entrez Domain: 2 X APPROXIMATE REPEATS. 166..222
Entrez Repetitive region: 2-1. 166..183
Entrez Repetitive region: 2-2. 202..222
Entrez glycosylation site: POTENTIAL. 259
PRODOM PD009870: 1..79
PRODOM PD013884: 86..126
PRODOM PD004669: 128..256
__________________
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 21/48 (43%), Positives = 29/48 (60%), Frame = +2
Query: 71 MEYRLLPIFTLLNLALVAIHAALPPEVYWKSVLPTTPMPKAITDILYP 214
ME+ L + +L LA V I A E YW+S+ P TP+PK +D+L P
Sbjct: 1 MEFAHLTVLSLFCLAFVGITATSSEEDYWQSIWPNTPLPKTFSDLLIP 48
Score = 57 (20.1 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 24/56 (42%), Positives = 28/56 (50%), Frame = +1
Query: 457 LFFLEKDLHPGTKLNLHFTTS--SNIQATFLPRQ-VADSIPFSSNKVEVVFNKFSVKP 621
LFF E DLHP L T S S I+ RQ V DSI + +NK + F F P
Sbjct: 68 LFF-EHDLHPRKNFILGNTNSVGSIIRPFTKSRQGVTDSI-WLANKEKQSFEDFCYSP 123
>gi|7488154|pir||T02289 probable polygalacturonase (EC 3.2.1.15) 1 beta chain
T13D8.26 - Arabidopsis thaliana >gi|3249081|gb|AAC24065.1|
(AC004473) Strong similarity to AR0GP2 gene gb|1762634 from
Lycopersicon esculentum. [Arabidopsis thaliana]
Length = 624
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 624
0 150 300 450 600
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 0.00014, P = 0.00014
Identities = 33/115 (28%), Positives = 51/115 (44%), Frame = +1
Query: 460 FFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQAX 639
FF E L GT + + + TFLPR + ++PFSS+ + ++ F S A
Sbjct: 409 FFREAMLKEGTLMQMPDIKDKMPKRTFLPRNIVKNLPFSSSTIGEIWRVFGAGENSSMAG 468
Query: 640 SXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKNX--KXFPXIXEXKKRI 798
++ AS + K C S E M DF TS LG+ + + KK++
Sbjct: 469 IISSAVSECERPASHGETKRCVGSAEDMIDFATSVLGRGVVVRTTENVVGSKKKV 523
>gi|7489055|pir||T07426 probable polygalacturonase (EC 3.2.1.15) 1 - tomato
>gi|1762634|gb|AAB39556.1| (U64789) AROGP2 [Lycopersicon
esculentum]
Length = 629
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 629
0 150 300 450 600
Plus Strand HSPs:
Score = 127 (44.7 bits), Expect = 0.00031, P = 0.00031
Identities = 32/99 (32%), Positives = 48/99 (48%), Frame = +1
Query: 460 FFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQAX 639
FF EK L GT + + + +FLPR +A +PFS++K++ + F S+ A
Sbjct: 414 FFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAK 473
Query: 640 SXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
++ S + K C S E M DF TS LG+N
Sbjct: 474 MIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRN 512
>gi|7489056|pir||T07587 probable polygalacturonase (EC 3.2.1.15) 1 - tomato
>gi|1762636|gb|AAB39557.1| (U64790) AROGP3 [Lycopersicon
esculentum]
Length = 632
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 632
0 150 300 450 600
Plus Strand HSPs:
Score = 127 (44.7 bits), Expect = 0.00031, P = 0.00031
Identities = 32/99 (32%), Positives = 48/99 (48%), Frame = +1
Query: 460 FFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQAX 639
FF EK L GT + + + +FLPR +A +PFS++K++ + F S+ A
Sbjct: 417 FFREKMLKSGTIMPMPDIKDKMPKRSFLPRAIAAKLPFSTSKIDELKKIFHAANDSQVAK 476
Query: 640 SXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
++ S + K C S E M DF TS LG+N
Sbjct: 477 MIGDALSECERAPSPGETKQCVNSAEDMIDFATSVLGRN 515
>gi|135067|sp|P09059|SVF3_VICFA UNKNOWN SEED PROTEIN 30.1 PRECURSOR (VF30.1)
>gi|82000|pir||S03328 embryonic abundant protein precursor (clone
pUSP14) - tick bean >gi|22046|emb|CAA31626.1| (X13242) seed protein
[Vicia faba]
Length = 268
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ___________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | | 268
0 50 100 150 200 250
__________________
Annotated Domains:
PRODOM PD009870: 1..79
PRODOM PD013884: 86..126
PRODOM PD004669: 128..256
__________________
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.0014, Sum P(2) = 0.0014
Identities = 20/48 (41%), Positives = 28/48 (58%), Frame = +2
Query: 71 MEYRLLPIFTLLNLALVAIHAALPPEVYWKSVLPTTPMPKAITDILYP 214
ME+ L + +L LA V I A E YW+S+ P TP+PK +D+ P
Sbjct: 1 MEFAHLTVLSLFCLAFVGITATSSGEDYWQSIWPNTPLPKTFSDLSIP 48
Score = 51 (18.0 bits), Expect = 0.0014, Sum P(2) = 0.0014
Identities = 23/56 (41%), Positives = 27/56 (48%), Frame = +1
Query: 457 LFFLEKDLHPGTKLNLHFTTS--SNIQATFLPRQ-VADSIPFSSNKVEVVFNKFSVKP 621
LFF E DLHP L T S S I+ RQ V DSI + +NK + F P
Sbjct: 68 LFF-EHDLHPRKNFILGNTNSVGSIIRPFTKSRQGVTDSI-WLANKEKQSLEDFCYSP 123
>gi|320585|pir||JQ1670 polygalacturonase (EC 3.2.1.15) 1 beta chain precursor -
tomato >gi|170480|gb|AAA34181.1| (M98466) polygalacturonase
isoenzyme 1 beta subunit [Lycopersicon esculentum]
>gi|1762586|gb|AAB39547.1| (U63374) polygalacturonase isoenzyme 1
beta subunit [Lycopersicon esculentum]
Length = 630
Frame 1 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 630
0 150 300 450 600
__________________
Annotated Domains:
DOMO DM02622: 135..173
DOMO DM02622: 175..215
DOMO DM02622: 217..257
DOMO DM02622: 259..306
DOMO DM02622: 308..353
DOMO DM02982: 355..628
Entrez domain: signal sequence 1..30
Entrez domain: amino-terminal propeptide 31..108
Entrez domain: carboxyl-terminal propeptide 398..630
Entrez binding site: carbohydrate (Asn) (covale 124
Entrez binding site: carbohydrate (Asn) (covale 142
Entrez binding site: carbohydrate (Asn) (covale 256
Entrez binding site: carbohydrate (Asn) (covale 334
Entrez binding site: carbohydrate (Asn) (covale 369
Entrez binding site: carbohydrate (Asn) (covale 387
__________________
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 0.0014, P = 0.0014
Identities = 31/99 (31%), Positives = 46/99 (46%), Frame = +1
Query: 460 FFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQAX 639
FF EK L GT + + + +FLPR +A +PFS++K+ + F S+
Sbjct: 415 FFREKMLKSGTIMPMPDIKDKMPKRSFLPRVIASKLPFSTSKIAELKKIFHAGDESQVEK 474
Query: 640 SXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
++ S + K C S E M DF TS LG+N
Sbjct: 475 MIGDALSECERAPSAGETKRCVNSAEDMIDFATSVLGRN 513
>gi|7488920|pir||T14306 glycine-rich protein - carrot (fragment)
>gi|1276971|gb|AAB01097.1| (U47097) glycine-rich protein [Daucus
carota]
Length = 111
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 111
0 50 100
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.0038, P = 0.0038
Identities = 23/52 (44%), Positives = 28/52 (53%), Frame = +1
Query: 211 PRLGGKXKYLSECWRQGRKRA-CRKRRR--WHQCQR-WWKRIRRRRERA-CR 351
PR G + CW R R+ CR RRR W + +R WW+R RRR R CR
Sbjct: 36 PRRGRWCWWRCRCWIWSRLRSWCRSRRRIRWRRRRRRWWRRRRRRSSRRWCR 87
>gi|100864|pir||S08315 cell wall protein - maize (fragment)
>gi|22269|emb|CAA31860.1| (X13506) cell wall protein (108 AA) [Zea
mays] >gi|168459|gb|AAA33457.1| (M36914) cell wall protein (put.);
putative [Zea mays]
Length = 108
Frame -3 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | | | 108
0 20 40 60 80 100
Minus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.0081, P = 0.0081
Identities = 17/34 (50%), Positives = 18/34 (52%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPP 250
P T P P P PPT T P PP T+TP PP
Sbjct: 63 PPATKPPTPKPTPPTYTPTPKPPAKPPTYTPTPP 96
Score = 77 (27.1 bits), Expect = 0.64, P = 0.47
Identities = 16/31 (51%), Positives = 17/31 (54%), Frame = -3
Query: 333 PPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P P P PPT T P PP P P PPT+T
Sbjct: 16 PTPKPTPPTYTPSPKPPTPK----PTPPTYT 42
Score = 77 (27.1 bits), Expect = 0.64, P = 0.47
Identities = 16/31 (51%), Positives = 17/31 (54%), Frame = -3
Query: 333 PPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P P P PPT T P PP P P PPT+T
Sbjct: 32 PTPKPTPPTYTPSPKPPTPK----PTPPTYT 58
Score = 72 (25.3 bits), Expect = 7.6, P = 1.0
Identities = 16/32 (50%), Positives = 17/32 (53%), Frame = -3
Query: 333 PPPDPFPPTLTLVPPPPFPAC-TFTPLPPTFT 241
P P P PPT T P PP T P PPT+T
Sbjct: 48 PTPKPTPPTYTPSPKPPATKPPTPKPTPPTYT 79
>gi|485515|pir||S33622 ADR6 protein - soybean >gi|296445|emb|CAA49340.1|
(X69639) auxin down regulated [Glycine max]
>gi|2304955|gb|AAB65592.1| (U64866) similar to ADR6 encoded by
GenBank Accession Number X69639; aluminum induced [Glycine max]
Length = 272
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): ______ _________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | | | 272
0 50 100 150 200 250
__________________
Annotated Domains:
DOMO DM02982: 18..258
__________________
Plus Strand HSPs:
Score = 67 (23.6 bits), Expect = 0.023, Sum P(3) = 0.023
Identities = 17/41 (41%), Positives = 25/41 (60%), Frame = +2
Query: 92 IFTLLNLALVAIHAALPPEVYWKSVLPTTPMPKAITDILYP 214
+FTL LA + HA E +W +V P TP+P ++ D+L P
Sbjct: 13 LFTL-GLARES-HAR--DEDFWHAVWPNTPIPSSLRDLLKP 49
Score = 59 (20.8 bits), Expect = 0.023, Sum P(3) = 0.023
Identities = 17/48 (35%), Positives = 25/48 (52%), Frame = +1
Query: 613 VKPGSEQAXSXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
+K +++ S + L KK A +EK CA S ++ F S LGKN
Sbjct: 106 IKDTTKEGYSFEELC--IKKEAIEGEEKFCAKSLGTVIGFAISKLGKN 151
Score = 53 (18.7 bits), Expect = 0.023, Sum P(3) = 0.023
Identities = 9/28 (32%), Positives = 16/28 (57%), Frame = +1
Query: 430 QLHDDPNVALFFLEKDLHPGTKLNLHFT 513
Q+ + FF ++DLHPG + + F+
Sbjct: 62 QIEETQYPKTFFYKEDLHPGKTMKVQFS 89
>gi|1762584|gb|AAB39546.1| (U63373) polygalacturonase isoenzyme 1 beta subunit
homolog [Arabidopsis thaliana]
Length = 626
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 626
0 150 300 450 600
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.032, P = 0.031
Identities = 28/99 (28%), Positives = 43/99 (43%), Frame = +1
Query: 460 FFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQAX 639
FF E L GT + + + +FLPR + +PFS++K+ + F S
Sbjct: 411 FFRESSLKEGTVIPMPDIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGG 470
Query: 640 SXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
++ S + K C S E M DF TS LG++
Sbjct: 471 IITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRS 509
>gi|7488153|pir||T01485 probable polygalacturonase (EC 3.2.1.15) 1 beta chain
F17O7.9 - Arabidopsis thaliana >gi|3176680|gb|AAC18803.1|
(AC003671) Identical to polygalacuronase isoenzyme 1 beta subunit
homolog mRNA gb|U63373. EST gb|AA404878 comes from this gene.
[Arabidopsis thaliana]
Length = 626
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 626
0 150 300 450 600
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.032, P = 0.031
Identities = 28/99 (28%), Positives = 43/99 (43%), Frame = +1
Query: 460 FFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQAX 639
FF E L GT + + + +FLPR + +PFS++K+ + F S
Sbjct: 411 FFRESSLKEGTVIPMPDIKDKMPKRSFLPRSIITKLPFSTSKLGEIKRIFHAVENSTMGG 470
Query: 640 SXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
++ S + K C S E M DF TS LG++
Sbjct: 471 IITDAVTECERPPSVGETKRCVGSAEDMIDFATSVLGRS 509
>gi|1914851|gb|AAC53191.1| (U92454) WW domain binding protein 5; WBP5 [Mus
musculus]
Length = 61
Frame -3 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 61
0 20 40 60
Minus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.037, P = 0.036
Identities = 19/41 (46%), Positives = 22/41 (53%), Frame = -3
Query: 333 PPPDPFPPTLTLVPPPPFPACTFTPLPPTFTEVLXFSTQSG 211
PPP P PP PPPP P PLPP F E++ F +G
Sbjct: 6 PPPPPPPPP----PPPPPP-----PLPPRFLEIIAFPYSAG 37
>gi|4056458|gb|AAC98031.1| (AC005990) Identical to gb|ATU59467 aromatic rich
glycoprotein which is strongly similar to gb|U63373
polygalacturonase isozyme 1 from Arabidopsis thaliana. EST
gb|AA395212 comes from this gene
Length = 622
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 622
0 150 300 450 600
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.041, P = 0.040
Identities = 27/99 (27%), Positives = 43/99 (43%), Frame = +1
Query: 460 FFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQAX 639
FF E L GT + + + +FLPR + +PFS++K+ + F S
Sbjct: 407 FFRESMLKEGTLIWMPDIKDKMPKRSFLPRSIVSKLPFSTSKIAEIKRVFHANDNSTMEG 466
Query: 640 SXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
++ + + K C S E M DF TS LG++
Sbjct: 467 IITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRS 505
>gi|1175115|sp|P41479|Y091_NPVAC HYPOTHETICAL 24.1 KD PROTEIN IN LEF4-P33
INTERGENIC REGION >gi|7460452|pir||D72861 AcOrf-91 protein -
Autographa californica nuclear polyhedrosis virus
>gi|559160|gb|AAA66721.1| (L22858) AcOrf-91 peptide [Autographa
californica nucleopolyhedrovirus]
Length = 224
Frame -3 hits (HSPs): ___________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | | 224
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00215: PROLINE-RICHPROTEIN3 30..111
PRODOM PD000540: H1(18) O76786(11) TONB(10) 35..137
PRODOM PD028890: Y091(2) O92451(1) 143..223
__________________
Minus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.043, P = 0.042
Identities = 22/37 (59%), Positives = 23/37 (62%), Frame = -3
Query: 360 PL*PACTFTPPPDPFPPTLTLVPPP-PFPACTFTPLPP 250
P+ P T TPPP P PPT T PPP P P T TP PP
Sbjct: 71 PIPPTPTPTPPPTPIPPTPTPTPPPSPIPP-TPTPSPP 107
Score = 100 (35.2 bits), Expect = 0.056, P = 0.055
Identities = 22/37 (59%), Positives = 23/37 (62%), Frame = -3
Query: 360 PL*PACTFTPPPDPFPPTLTLVPPP-PFPACTFTPLPP 250
P+ P T TPPP P PPT T PPP P P T TP PP
Sbjct: 84 PIPPTPTPTPPPSPIPPTPTPSPPPSPIPP-TPTPSPP 120
Score = 96 (33.8 bits), Expect = 0.16, P = 0.15
Identities = 21/37 (56%), Positives = 23/37 (62%), Frame = -3
Query: 360 PL*PACTFTPPPDPFPPTLTLVPPP-PFPACTFTPLPP 250
P+ P T +PPP P PPT T PPP P P T TP PP
Sbjct: 97 PIPPTPTPSPPPSPIPPTPTPSPPPSPIPP-TPTPSPP 133
Score = 96 (33.8 bits), Expect = 0.16, P = 0.15
Identities = 22/46 (47%), Positives = 26/46 (56%), Frame = -3
Query: 360 PL*PACTFTPPPDPFPPTLTLVPPP------PFPACTFTPLPPTFT 241
P+ P T TPPP P PPT T PPP P P+ +P+PPT T
Sbjct: 84 PIPPTPTPTPPPSPIPPTPTPSPPPSPIPPTPTPSPPPSPIPPTPT 129
Score = 92 (32.4 bits), Expect = 0.48, P = 0.38
Identities = 19/29 (65%), Positives = 19/29 (65%), Frame = -3
Query: 336 TPPPDPFPPTLTLVPPP-PFPACTFTPLPP 250
TPPP P PPT T PPP P P T TP PP
Sbjct: 66 TPPPTPIPPTPTPTPPPTPIPP-TPTPTPP 94
Score = 86 (30.3 bits), Expect = 2.4, P = 0.91
Identities = 20/37 (54%), Positives = 22/37 (59%), Frame = -3
Query: 351 PACTFTP-PPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T TP PP P PP T +PP P P TP+PPT T
Sbjct: 54 PPPTPTPSPPSPTPPP-TPIPPTPTPTPPPTPIPPTPT 90
>gi|168457|gb|AAA33456.1| (M36913) cell wall protein (put.); putative [Zea
mays]
Length = 109
Frame -3 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | | | 109
0 20 40 60 80 100
Minus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.078, P = 0.075
Identities = 17/35 (48%), Positives = 18/35 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPAC-TFTPLPP 250
P T P P P PPT T P PP T+TP PP
Sbjct: 63 PPATKPPTPKPTPPTYTPTPKPPATKPPTYTPTPP 97
Score = 77 (27.1 bits), Expect = 0.86, P = 0.58
Identities = 16/31 (51%), Positives = 17/31 (54%), Frame = -3
Query: 333 PPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P P P PPT T P PP P P PPT+T
Sbjct: 16 PTPKPTPPTYTPSPKPPTPK----PTPPTYT 42
Score = 77 (27.1 bits), Expect = 0.86, P = 0.58
Identities = 16/31 (51%), Positives = 17/31 (54%), Frame = -3
Query: 333 PPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P P P PPT T P PP P P PPT+T
Sbjct: 32 PTPKPTPPTYTPSPKPPTPK----PTPPTYT 58
Score = 72 (25.3 bits), Expect = 8.3, P = 1.0
Identities = 16/32 (50%), Positives = 17/32 (53%), Frame = -3
Query: 333 PPPDPFPPTLTLVPPPPFPAC-TFTPLPPTFT 241
P P P PPT T P PP T P PPT+T
Sbjct: 48 PTPKPTPPTYTPSPKPPATKPPTPKPTPPTYT 79
>gi|462345|sp|P35310|HSP1_PONPY SPERM PROTAMINE P1 (CYSTEINE-RICH PROTAMINE)
>gi|294041|gb|AAA36946.1| (L14589) protamine [Pongo pygmaeus]
>gi|6979740|gb|AAF34623.1|AF215710_1 (AF215710) protamine 1 [Pongo
pygmaeus]
Length = 51
Frame 1 hits (HSPs): __________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 51
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..49
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 79 (27.8 bits), Expect = 0.13, P = 0.12
Identities = 16/42 (38%), Positives = 23/42 (54%), Frame = +1
Query: 247 CWRQGRKRACRKRRRWHQCQRWWKRIRRRRERACRSQGESXC 372
C Q + R CR+R+R H+ +R + RRR R CR + C
Sbjct: 7 CRSQSQSRCCRRRQRCHRRRRRCCQTRRRAMRCCRRRYRLRC 48
>gi|7299574|gb|AAF54759.1| (AE003695) CG14742 gene product [Drosophila
melanogaster]
Length = 74
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | 74
0 20 40 60
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.21, P = 0.19
Identities = 18/40 (45%), Positives = 20/40 (50%), Frame = +2
Query: 245 NVGGKGVNVHAGKGGGGTNVNVGGKGSGGGVNVHAGHKGK 364
N GG G G GGGG GG G GGG +G+K K
Sbjct: 4 NKGGGGGGGGGGGGGGGGGNKKGGGGGGGGGGGGSGNKNK 43
Score = 63 (22.2 bits), Expect = 7.2, P = 1.0
Identities = 20/45 (44%), Positives = 21/45 (46%), Frame = +2
Query: 251 GG--KGVNVHAGKGGGGT-NVNVGGKGSGGGVN-VHAGHKGKAXA 373
GG KG G GGGG+ N N GG G GG G KA A
Sbjct: 21 GGNKKGGGGGGGGGGGGSGNKNKGGDGGGGDKGGAKKGQDQKAAA 65
>gi|7305409 ref|NP_038665.1| protamine 1 >gi|123692|sp|P02319|HSP1_MOUSE SPERM
PROTAMINE P1 (CYSTEINE-RICH PROTAMINE) >gi|2144756|pir||HSMSS1
protamine - mouse >gi|53789|emb|CAA30472.1| (X07625) protamine 1
[Mus musculus] >gi|53791|emb|CAA32169.1| (X14003) protamine 1 (AA
1-51) [Mus musculus] >gi|200489|gb|AAA39980.1| (K02926) protamine 1
[Mus musculus] >gi|200503|gb|AAA39985.1| (M27500) protamine [Mus
musculus] >gi|1360005|emb|CAA87410.1| (Z47352) protamine 1 [Mus
musculus]
Length = 51
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 51
0 20 40
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.22, P = 0.20
Identities = 16/37 (43%), Positives = 21/37 (56%), Frame = +1
Query: 262 RKRACRKRRRWHQCQRWWKRIRRRRERACRSQGESXC 372
R R CR + R +C+R +R RRRR R CR + C
Sbjct: 3 RYRCCRSKSR-SRCRRRRRRCRRRRRRCCRRRRRRCC 38
Score = 75 (26.4 bits), Expect = 0.36, P = 0.30
Identities = 17/35 (48%), Positives = 22/35 (62%), Frame = +1
Query: 247 CWRQGRKRACRKRRRWHQCQRWWKRI-RRRRERACR 351
C R + CR+RRR +C+R +R RRRR R CR
Sbjct: 6 CCRSKSRSRCRRRRR--RCRRRRRRCCRRRRRRCCR 39
>gi|123695|sp|P10118|HSP1_RAT SPERM PROTAMINE P1 (CYSTEINE-RICH PROTAMINE)
>gi|92658|pir||S03997 protamine 1 - rat >gi|1359528|emb|CAA87061.1|
(Z46939) protamine 1 [Rattus norvegicus]
Length = 51
Frame 1 hits (HSPs): _____________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 51
0 20 40
__________________
Annotated Domains:
PFAM protamine_P1: Protamine P1 1..49
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 7..45
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.22, P = 0.20
Identities = 16/37 (43%), Positives = 21/37 (56%), Frame = +1
Query: 262 RKRACRKRRRWHQCQRWWKRIRRRRERACRSQGESXC 372
R R CR + R +C+R +R RRRR R CR + C
Sbjct: 3 RYRCCRSKSR-SRCRRRRRRCRRRRRRCCRRRRRRCC 38
Score = 75 (26.4 bits), Expect = 0.36, P = 0.30
Identities = 17/35 (48%), Positives = 22/35 (62%), Frame = +1
Query: 247 CWRQGRKRACRKRRRWHQCQRWWKRI-RRRRERACR 351
C R + CR+RRR +C+R +R RRRR R CR
Sbjct: 6 CCRSKSRSRCRRRRR--RCRRRRRRCCRRRRRRCCR 39
>gi|123696|sp|P24714|HSP1_SAGIM SPERM PROTAMINE P1 (CYSTEINE-RICH PROTAMINE)
>gi|348569|pir||S22582 protamine 1 - Saguinus imperator
>gi|4494091|emb|CAA43853.1| (X61678) protamine 1 [Saguinus
imperator]
Length = 50
Frame 1 hits (HSPs): ______________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 50
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..48
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 77 (27.1 bits), Expect = 0.22, P = 0.20
Identities = 17/37 (45%), Positives = 21/37 (56%), Frame = +1
Query: 262 RKRACRKRRRWHQCQRWWKRIRRRRERACRSQGESXC 372
R R CR + R +C R +R RRRR R CR + S C
Sbjct: 3 RYRCCRSQSR-SRCYRQRRRGRRRRRRTCRRRRASRC 38
Score = 67 (23.6 bits), Expect = 2.7, P = 0.93
Identities = 17/42 (40%), Positives = 22/42 (52%), Frame = +1
Query: 247 CWRQGRKRACRKRRRWHQCQRWWKRIRRRRERACRSQGESXC 372
C Q R R R+RRR + +R R RRR R CR + + C
Sbjct: 7 CRSQSRSRCYRQRRRGRRRRRRTCR-RRRASRCCRRRYKLTC 47
Score = 64 (22.5 bits), Expect = 5.7, P = 1.0
Identities = 16/37 (43%), Positives = 23/37 (62%), Frame = +1
Query: 241 SECWRQGRKRACRKRRRWHQCQRWWKRIRRRRERACR 351
S C+RQ R+R R+RRR + +R + RRR + CR
Sbjct: 13 SRCYRQ-RRRGRRRRRRTCRRRRASRCCRRRYKLTCR 48
>gi|100216|pir||S14975 extensin class II (clone uJ-2) - tomato
>gi|1345538|emb|CAA39216.1| (X55686) extensin (class II)
[Lycopersicon esculentum]
Length = 82
Frame -3 hits (HSPs): __________________________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | | | 82
0 20 40 60 80
__________________
Annotated Domains:
DOMO DM05291: 12..82
__________________
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.28, P = 0.24
Identities = 16/29 (55%), Positives = 16/29 (55%), Frame = -3
Query: 333 PPPDPFPPTLTLV-PPPPFPACTFTPLPP 250
PPP P PP T PPPP P PLPP
Sbjct: 37 PPPSPSPPPPTYSSPPPPPPFYENIPLPP 65
Score = 74 (26.0 bits), Expect = 0.46, P = 0.37
Identities = 18/38 (47%), Positives = 23/38 (60%), Frame = -3
Query: 351 PACTFT--PPPDPFPPTLTLV---PPPPFPACTFTPLPPTFT 241
P T++ PPP P PP T PPPP P+ P PPT++
Sbjct: 12 PPYTYSSPPPPSPSPPPPTYYYSSPPPPSPS----PPPPTYS 49
Score = 70 (24.6 bits), Expect = 1.3, P = 0.71
Identities = 20/48 (41%), Positives = 25/48 (52%), Frame = -3
Query: 351 PACTFT--PPPDPFPPTLTLV---PPPPFPAC---TFT--PLPPTFTE 238
P T++ PPP P PP T PPPP P+ T++ P PP F E
Sbjct: 12 PPYTYSSPPPPSPSPPPPTYYYSSPPPPSPSPPPPTYSSPPPPPPFYE 59
>gi|1762428|gb|AAB39538.1| (U59467) aromatic rich glycoprotein JP630
[Arabidopsis thaliana]
Length = 622
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | 622
0 150 300 450 600
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.32, P = 0.27
Identities = 26/99 (26%), Positives = 42/99 (42%), Frame = +1
Query: 460 FFLEKDLHPGTKLNLHFTTSSNIQATFLPRQVADSIPFSSNKVEVVFNKFSVKPGSEQAX 639
FF E L GT + + + +FLP + +PFS++K+ + F S
Sbjct: 407 FFRESMLKEGTLIWMPDIKDKMPKRSFLPCSIVSKLPFSTSKIAEIKRVFHANDNSTMEG 466
Query: 640 SXKILSXNFKKVASXXKEKXCAPSXESMNDFXTSXLGKN 756
++ + + K C S E M DF TS LG++
Sbjct: 467 IITDAVRECERPPTVSETKRCVGSAEDMIDFATSVLGRS 505
>gi|82698|pir||JQ0985 hydroxyproline-rich glycoprotein precursor - maize
>gi|257041|gb|AAB23539.1| (S45164) hydroxyproline-rich
glycoprotein, HRGP [maize, Peptide, 328 aa] [Zea mays]
>gi|4007865|emb|CAA10387.1| (AJ131535) Hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays]
Length = 328
Frame -3 hits (HSPs): ___________ ______
Annotated Domains: ____
__________________________________________________
Database sequence: | | | | 328
0 150 300
__________________
Annotated Domains:
Entrez domain: signal sequence 1..26
__________________
Minus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.59, P = 0.44
Identities = 21/41 (51%), Positives = 22/41 (53%), Frame = -3
Query: 360 PL*PACTFTP-PPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P P T TP PP P PPT T P P P TP PPT+T
Sbjct: 90 PTPPTYTPTPTPPKPTPPTYTPAPTPHKPTPKPTPTPPTYT 130
Score = 88 (31.0 bits), Expect = 2.8, P = 0.94
Identities = 17/31 (54%), Positives = 19/31 (61%), Frame = -3
Query: 342 TFTPPPDPFPPTLTLVPPPPFPAC-TFTPLP 253
T+TP P P PPT T P PP P T+TP P
Sbjct: 83 TYTPSPKPTPPTYTPTPTPPKPTPPTYTPAP 113
Score = 84 (29.6 bits), Expect = 7.9, P = 1.0
Identities = 17/32 (53%), Positives = 18/32 (56%), Frame = -3
Query: 336 TPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
TP P P PPT T P PP P P PPT+T
Sbjct: 119 TPKPTPTPPTYTPTPKPPTPK----PTPPTYT 146
Score = 84 (29.6 bits), Expect = 7.9, P = 1.0
Identities = 18/37 (48%), Positives = 19/37 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T P P P PPT T P PP P P PPT+T
Sbjct: 183 PPATKPPTPKPTPPTYTPSPKPPTPK----PTPPTYT 215
>gi|7008009|dbj|BAA90877.1| (AB031227) PsAD1 [Pisum sativum]
Length = 87
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | 87
0 20 40 60 80
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.59, P = 0.44
Identities = 18/40 (45%), Positives = 20/40 (50%), Frame = +2
Query: 248 VGGKGVNVHAGKGGGGTNVNVGGKGSGGGVNVHAGHKGKA 367
+GGKG + KGGGG G KG GGG G G A
Sbjct: 1 MGGKGGSGGGAKGGGGGG---GAKGGGGGGGAKGGSGGGA 37
Score = 65 (22.9 bits), Expect = 4.4, P = 0.99
Identities = 15/30 (50%), Positives = 15/30 (50%), Frame = +2
Query: 251 GGKGVNVHAGKGGGGTNVNVGG--KGSGGG 334
GG G G GGGG GG KG GGG
Sbjct: 14 GGGGGGAKGGGGGGGAKGGSGGGAKGGGGG 43
Score = 64 (22.5 bits), Expect = 5.6, P = 1.0
Identities = 17/41 (41%), Positives = 17/41 (41%), Frame = +2
Query: 251 GGKGVNVHAGKGGGGTNVNVGGKG----SGGGVNVHAGHKG 361
GG G G GGGG GG G SGGG G G
Sbjct: 5 GGSGGGAKGGGGGGGAKGGGGGGGAKGGSGGGAKGGGGGSG 45
>gi|7290578|gb|AAF46028.1| (AE003434) CG12732 gene product [Drosophila
melanogaster]
Length = 153
Frame -3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Minus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.80, P = 0.55
Identities = 17/33 (51%), Positives = 20/33 (60%), Frame = -3
Query: 345 CTFTPPPDPFPPTLTLVPP-PPFPACT-FTPLPP 250
C TPPP P PP + ++PP PP P PLPP
Sbjct: 20 CHATPPPPPMPP-MPVIPPLPPMPVIPPIPPLPP 52
>gi|283045|pir||S28264 hydroxyproline-rich glycoprotein - maize
>gi|22333|emb|CAA44844.1| (X63134) hydroxyproline-rich
glycoprotein [Zea mays] >gi|228936|prf||1814452A Hyp-rich
glycoprotein [Zea mays]
Length = 303
Frame -3 hits (HSPs): _________ ______ _______
__________________________________________________
Database sequence: | | | | | | || 303
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.87, P = 0.58
Identities = 21/42 (50%), Positives = 22/42 (52%), Frame = -3
Query: 360 PL*PACTFTPPPDP--FPPTLTLVPPPPFPACTFTPLPPTFT 241
P P T TPPP P PPT T P P P TP PPT+T
Sbjct: 94 PTPPTYTPTPPPTPKPTPPTYTPAPTPHKPTPKPTPTPPTYT 135
Score = 87 (30.6 bits), Expect = 3.2, P = 0.96
Identities = 18/32 (56%), Positives = 20/32 (62%), Frame = -3
Query: 342 TFTPPPDPFPPTLTLVPPP-PFPAC-TFTPLP 253
T+TP P P PPT T PPP P P T+TP P
Sbjct: 87 TYTPSPKPTPPTYTPTPPPTPKPTPPTYTPAP 118
Score = 84 (29.6 bits), Expect = 7.0, P = 1.0
Identities = 18/37 (48%), Positives = 19/37 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T P P P PPT T P PP P P PPT+T
Sbjct: 156 PPATKPPTPKPTPPTYTPSPKPPTPK----PTPPTYT 188
Score = 83 (29.2 bits), Expect = 9.0, P = 1.0
Identities = 18/37 (48%), Positives = 19/37 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T P P P PPT T P PP P P PPT+T
Sbjct: 225 PPATKPPTPKPTPPTYTPSPKPPTPK----PSPPTYT 257
>gi|7292503|gb|AAF47906.1| (AE003481) CG15023 gene product [Drosophila
melanogaster]
Length = 172
Frame -3 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 172
0 50 100 150
Minus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.93, P = 0.61
Identities = 17/37 (45%), Positives = 19/37 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T+ PPP P T T P P PA T+ P PP T
Sbjct: 68 PVPTYLPPPPPTTTTTTTTTPAPTPAPTYLPPPPPTT 104
Score = 82 (28.9 bits), Expect = 3.6, P = 0.97
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPP 250
PA T+ PPP P T T P P PA T+ P PP
Sbjct: 92 PAPTYLPPPPPTTTTTTTTPAPT-PAPTYLPPPP 124
>gi|3025832|gb|AAC12760.1| (AF055985) pyrrolidone-rich antigen [Onchocerca
volvulus]
Length = 93
Frame -3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.97, P = 0.62
Identities = 17/39 (43%), Positives = 19/39 (48%), Frame = -3
Query: 333 PPPDPF-----PPTL-TLVPPPPFPACTFTPLPPTFTEV 235
PPP P PPT T PPPP P F +PP F +
Sbjct: 11 PPPPPITPGIRPPTTPTPTPPPPPPPRGFPRIPPPFPPI 49
>gi|7296368|gb|AAF51657.1| (AE003592) CG11458 gene product [Drosophila
melanogaster]
Length = 98
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 98
0 20 40 60 80
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.97, P = 0.62
Identities = 16/34 (47%), Positives = 17/34 (50%), Frame = +2
Query: 251 GGKGVNVHAGKGGGGTNVNVGGKGSGGGVNVHAG 352
GG G H G GGG + GG G GGG H G
Sbjct: 63 GGGGGGKHGGGNGGGGK-HGGGGGGGGGGGKHGG 95
>gi|123699|sp|P15342|HSP2_HORSE SPERM HISTONE P2A (ST2A) >gi|108203|pir||S10754
protamine St2a - horse
Length = 62
Frame 1 hits (HSPs): ___________________________________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
__________________
Annotated Domains:
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 9..61
__________________
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.99, P = 0.63
Identities = 14/34 (41%), Positives = 21/34 (61%), Frame = +1
Query: 250 WRQGRKRACRKRRRWHQCQRWWKRIRRRRERACR 351
+R+ R+R C RR + +R ++ RRRR R CR
Sbjct: 8 YRRYRRRCCSPRRLYRLRRRRYRSSRRRRRRPCR 41
Score = 71 (25.0 bits), Expect = 0.99, P = 0.63
Identities = 18/42 (42%), Positives = 25/42 (59%), Frame = +1
Query: 226 KXKYLSECWRQGRKRACRKRRRWHQCQRWWKRIRRRRERACR 351
+ +Y S R+ R+R CR+RR C +R+RRRR R CR
Sbjct: 26 RRRYRSS--RRRRRRPCRRRRHRRVC----RRVRRRR-RCCR 60
>gi|123697|sp|P04102|HSP1_SHEEP SPERM PROTAMINE P1 (CYSTEINE-RICH PROTAMINE)
>gi|70787|pir||HSSH sperm histone - sheep
Length = 50
Frame 1 hits (HSPs): ___________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 50
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..49
PROSITE PROTAMINE_P1: Protamine P1 signature. 1..12
__________________
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.99, P = 0.63
Identities = 17/34 (50%), Positives = 21/34 (61%), Frame = +1
Query: 247 CWRQGRKRACRKRRRWHQCQRWWKRI-RRRRERAC 348
C R R CR+RRR +C+R +R RRRR R C
Sbjct: 6 CLTHSRSR-CRRRRR-RRCRRRRRRFGRRRRRRVC 38
Score = 67 (23.6 bits), Expect = 2.7, P = 0.93
Identities = 17/35 (48%), Positives = 21/35 (60%), Frame = +1
Query: 247 CWRQGRKRACRKRRRWHQCQRWWKRIRRRRER--ACR 351
C R R CR+RRR +C+R +R RRR R CR
Sbjct: 6 CLTHSRSR-CRRRRR-RRCRRRRRRFGRRRRRRVCCR 40
>gi|123694|sp|P10119|HSP1_RABIT SPERM PROTAMINE P1 (CYSTEINE-RICH PROTAMINE)
>gi|90132|pir||S02007 protamine I - rabbit
Length = 49
Frame 1 hits (HSPs): ____________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 49
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..48
PROSITE PROTAMINE_P1: Protamine P1 signature. 1..12
__________________
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.99, P = 0.63
Identities = 15/37 (40%), Positives = 21/37 (56%), Frame = +1
Query: 262 RKRACRKRRRWHQCQRWWKRIRRRRERACRSQGESXC 372
R R CR + R +C+R +R RRRR R C+ + C
Sbjct: 2 RYRCCRSQSR-SRCRRRRRRCRRRRRRCCQRRRVRKC 37
Score = 65 (22.9 bits), Expect = 4.4, P = 0.99
Identities = 17/34 (50%), Positives = 22/34 (64%), Frame = +1
Query: 247 CWRQGRKRACRKRRRWHQCQRWWKRI-RRRRERAC 348
C Q R R CR+RRR +C+R +R +RRR R C
Sbjct: 6 CRSQSRSR-CRRRRR--RCRRRRRRCCQRRRVRKC 37
>gi|123704|sp|P15343|HSP3_HORSE SPERM HISTONE P2B (ST2B) >gi|108204|pir||S10755
protamine St2b - horse
Length = 58
Frame 1 hits (HSPs): __________________________________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | 58
0 20 40
__________________
Annotated Domains:
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 3..52
__________________
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.99, P = 0.63
Identities = 18/42 (42%), Positives = 25/42 (59%), Frame = +1
Query: 226 KXKYLSECWRQGRKRACRKRRRWHQCQRWWKRIRRRRERACR 351
+ +Y S R+ R+R CR+RR C +R+RRRR R CR
Sbjct: 22 RRRYRSS--RRRRRRPCRRRRHRRVC----RRVRRRR-RCCR 56
Score = 65 (22.9 bits), Expect = 4.4, P = 0.99
Identities = 13/30 (43%), Positives = 18/30 (60%), Frame = +1
Query: 262 RKRACRKRRRWHQCQRWWKRIRRRRERACR 351
R+R C RR + +R ++ RRRR R CR
Sbjct: 8 RRRRCSPRRLYRLRRRRYRSSRRRRRRPCR 37
>gi|108389|pir||S21673 protamine 2 - pig
Length = 91
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.99, P = 0.63
Identities = 18/31 (58%), Positives = 22/31 (70%), Frame = +1
Query: 262 RKRACRKRRRWHQCQ-RWWKR-IRR-RRERACR 351
R+R+CR RRR C+ RW +R RR RR R CR
Sbjct: 58 RRRSCRSRRR--ACRHRWHRRGCRRIRRRRRCR 88
>gi|462336|sp|P35302|HSP1_ALOSE SPERM PROTAMINE P1 >gi|289128|gb|AAA51404.1|
(L14592) protamine [Alouatta seniculus]
Length = 52
Frame 1 hits (HSPs): _____________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 52
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..50
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.99, P = 0.63
Identities = 17/38 (44%), Positives = 19/38 (50%), Frame = +1
Query: 262 RKRACRKRRRWH-QCQRWWKRIRRRRERACRSQGESXC 372
R R CR R +C R R RRRR R+CR S C
Sbjct: 3 RYRCCRSRSLSRSRCYRQRPRCRRRRRRSCRRPRASRC 40
>gi|5306259|gb|AAD41991.1|AC006233_18 (AC006233) hypothetical protein
[Arabidopsis thaliana]
Length = 134
Frame -3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 134
0 50 100
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.99, P = 0.63
Identities = 21/38 (55%), Positives = 24/38 (63%), Frame = -3
Query: 363 FPL*PACTFTPPPDPFPPTLTLVP--PPPFPACTFTPLPP 250
FPL P +PPP P PP+ + P PPPFPA F P PP
Sbjct: 34 FPLLP---LSPPPSP-PPSPSSPPRLPPPFPAL-FPPEPP 68
>gi|228938|prf||1814452C Hyp-rich glycoprotein [Zea diploperennis]
Length = 349
Frame -3 hits (HSPs): ________ _______________
__________________________________________________
Database sequence: | | | | 349
0 150 300
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 1.1, P = 0.66
Identities = 18/34 (52%), Positives = 20/34 (58%), Frame = -3
Query: 342 TFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
T+TP P P PPT T P PP P P PPT+T
Sbjct: 83 TYTPSPKPTPPTYTPTPTPPTPK----PTPPTYT 112
Score = 90 (31.7 bits), Expect = 1.8, P = 0.84
Identities = 18/34 (52%), Positives = 20/34 (58%), Frame = -3
Query: 342 TFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
T+TP P P PPT T P PP P P PPT+T
Sbjct: 184 TYTPSPKPTPPTYTPSPKPPTPK----PTPPTYT 213
Score = 88 (31.0 bits), Expect = 3.1, P = 0.95
Identities = 20/36 (55%), Positives = 21/36 (58%), Frame = -3
Query: 342 TFTPP-PDPFPPTLTLVPPP-PFPACTFTPLPPTFT 241
T TPP P P PPT T P P P P TP PPT+T
Sbjct: 98 TPTPPTPKPTPPTYTPAPTPKPTPTPKPTPTPPTYT 133
Score = 84 (29.6 bits), Expect = 8.6, P = 1.0
Identities = 18/37 (48%), Positives = 19/37 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T P P P PPT T P PP P P PPT+T
Sbjct: 154 PPATKPPTPKPTPPTYTPSPKPPTPK----PTPPTYT 186
Score = 84 (29.6 bits), Expect = 8.6, P = 1.0
Identities = 18/37 (48%), Positives = 19/37 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T P P P PPT T P PP P P PPT+T
Sbjct: 218 PPATKPPTPKPTPPTYTPSPKPPTPK----PTPPTYT 250
>gi|283032|pir||S22456 hydroxyproline-rich glycoprotein - perennial teosinte
>gi|22092|emb|CAA45514.1| (X64173) hydroxyproline-rich
glycoprotein [Zea diploperennis]
Length = 350
Frame -3 hits (HSPs): _________ ______________
__________________________________________________
Database sequence: | | | | 350
0 150 300
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 1.1, P = 0.67
Identities = 18/34 (52%), Positives = 20/34 (58%), Frame = -3
Query: 342 TFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
T+TP P P PPT T P PP P P PPT+T
Sbjct: 83 TYTPSPKPTPPTYTPTPTPPTPK----PTPPTYT 112
Score = 90 (31.7 bits), Expect = 1.8, P = 0.84
Identities = 18/34 (52%), Positives = 20/34 (58%), Frame = -3
Query: 342 TFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
T+TP P P PPT T P PP P P PPT+T
Sbjct: 185 TYTPSPKPTPPTYTPSPKPPTPK----PTPPTYT 214
Score = 86 (30.3 bits), Expect = 5.2, P = 0.99
Identities = 20/37 (54%), Positives = 21/37 (56%), Frame = -3
Query: 342 TFTPP-PDPFPPTLTLVPPP--PFPACTFTPLPPTFT 241
T TPP P P PPT T P P P P TP PPT+T
Sbjct: 98 TPTPPTPKPTPPTYTPAPTPHKPTPTPKPTPTPPTYT 134
Score = 84 (29.6 bits), Expect = 8.7, P = 1.0
Identities = 18/37 (48%), Positives = 19/37 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T P P P PPT T P PP P P PPT+T
Sbjct: 155 PPATKPPTPKPTPPTYTPSPKPPTPK----PTPPTYT 187
Score = 84 (29.6 bits), Expect = 8.7, P = 1.0
Identities = 18/37 (48%), Positives = 19/37 (51%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPTFT 241
P T P P P PPT T P PP P P PPT+T
Sbjct: 219 PPATKPPTPKPTPPTYTPSPKPPTPK----PTPPTYT 251
>gi|5902409|gb|AAD55511.1|AC008148_21 (AC008148) Unknown protein [Arabidopsis
thaliana]
Length = 138
Frame -3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 1.2, P = 0.69
Identities = 17/35 (48%), Positives = 19/35 (54%), Frame = -3
Query: 351 PACTFTPPPDPFPPTLTLVPPPPFPACTFTPLPPT 247
P PPP P PP+ PPPP AC PLPP+
Sbjct: 48 PCLQNIPPPSPPPPS----PPPPSQACPPPPLPPS 78
>gi|1076719|pir||S53051 glycine rich protein - barley (fragment)
>gi|728596|emb|CAA88559.1| (Z48625) glycine rich protein [Hordeum
vulgare]
Length = 64
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 1.3, P = 0.71
Identities = 18/38 (47%), Positives = 21/38 (55%), Frame = +2
Query: 272 HAGKGGGGTNVNVGGKGSGGGVNVHAGHKGKAXACFCW 385
H GKGGGG + GG G GGG + GH G + C W
Sbjct: 3 HGGKGGGGYPGH-GG-GGGGG---YPGHGGGSSGCH-W 34
>gi|462341|sp|P35306|HSP1_HYLLA SPERM PROTAMINE P1 (CYSTEINE-RICH PROTAMINE)
>gi|290888|gb|AAA51527.1| (L14588) protamine [Hylobates lar]
Length = 51
Frame 1 hits (HSPs): ________________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 51
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..49
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 1.3, P = 0.72
Identities = 17/38 (44%), Positives = 24/38 (63%), Frame = +1
Query: 241 SECWRQG------RKRACRKRRRWHQCQRWWKRIRRRR 336
S C+R+G R+R+C+ RRR +C R R+RRRR
Sbjct: 13 SRCYRRGQRSRRRRRRSCQTRRRAMRCCRPRYRLRRRR 50
Score = 68 (23.9 bits), Expect = 2.1, P = 0.88
Identities = 14/32 (43%), Positives = 21/32 (65%), Frame = +1
Query: 262 RKRACRKRRRWHQCQRWWKRIRRRRERACRSQ 357
R R CR + R +C R +R RRRR R+C+++
Sbjct: 3 RYRCCRSQSR-SRCYRRGQRSRRRRRRSCQTR 33
>gi|462337|sp|P35304|HSP1_CAVPO SPERM PROTAMINE P1 (CYSTEINE-RICH PROTAMINE)
>gi|348278|pir||S29972 protamine 1 - guinea pig
>gi|7439893|pir||S29973 protamine 1 - guinea pig
>gi|49562|emb|CAA77644.1| (Z11545) protamine 1 [Cavia porcellus]
>gi|49564|emb|CAA77643.1| (Z11544) protamine 1 [Cavia porcellus]
>gi|607016|gb|AAA58349.1| (M83896) protamine 1 [Cavia porcellus]
Length = 48
Frame 1 hits (HSPs): _________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 48
0 20 40
__________________
Annotated Domains:
BLOCKS BL00048: Protamine P1 proteins. 1..27
PFAM protamine_P1: Protamine P1 1..46
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 1.3, P = 0.72
Identities = 16/42 (38%), Positives = 21/42 (50%), Frame = +1
Query: 247 CWRQGRKRACRKRRRWHQCQRWWKRIRRRRERACRSQGESXC 372
C R + CR+RRR +R +R RRR R CR + C
Sbjct: 6 CCRSPSRSRCRRRRRRFYRRR--RRCHRRRRRCCRRRYTRRC 45
WARNING: HSPs involving 74 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.93
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.348 0.152 0.529
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.329 0.145 0.486
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.326 0.136 0.436
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.350 0.156 0.544
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.353 0.153 0.606
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.154 0.518
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 304 277 10. 78 3 12 22 0.098 36
33 0.12 39
+2 0 304 277 10. 78 3 12 22 0.098 36
33 0.12 39
+1 0 304 280 10. 78 3 12 22 0.099 36
33 0.12 39
-1 0 304 275 10. 78 3 12 22 0.097 36
33 0.12 39
-2 0 304 275 10. 78 3 12 22 0.097 36
33 0.12 39
-3 0 304 277 10. 78 3 12 22 0.098 36
33 0.12 39
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 124
No. of states in DFA: 600 (59 KB)
Total size of DFA: 286 KB (320 KB)
Time to generate neighborhood: 0.04u 0.00s 0.04t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 383.02u 2.15s 385.17t Elapsed: 00:03:25
Total cpu time: 383.15u 2.23s 385.38t Elapsed: 00:03:26
Start: Mon Oct 16 17:18:40 2000 End: Mon Oct 16 17:22:06 2000
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000