Kingdom |
Category |
Genus/Species |
Count |
|
  |
  |
7 |
Archaea |
  |
  |
33 |
  |
|
  |
7 |
  |
Crenarchaeota |
  |
1 |
  |
  |
Nitrosopumilus maritimus (nmr) |
1 |
  |
Euryarchaeota |
  |
31 |
  |
  |
Haloarcula marismortui (hma) |
1 |
  |
  |
Haloquadratum walsbyi (hwa) |
1 |
  |
  |
Methanosarcina barkeri (mba) |
3 |
  |
  |
Candidatus Methanoregula boonei (mbn) |
5 |
  |
  |
Methanoculleus marisnigri (mem) |
2 |
  |
  |
Methanospirillum hungatei (mhu) |
5 |
  |
  |
Methanococcus jannaschii (mja) |
1 |
  |
  |
Methanosarcina mazei (mma) |
3 |
  |
  |
Methanobacterium thermoautotrophicum (mth) |
2 |
  |
  |
Pyrococcus abyssi (pab) |
2 |
  |
  |
Pyrococcus furiosus (pfu) |
1 |
  |
  |
Uncultured methanogenic archaeon RC-I (rci) |
3 |
  |
  |
Thermococcus onnurineus (ton) |
2 |
  |
Korarchaeota |
  |
1 |
  |
  |
Candidatus Korarchaeum cryptofilum (kcr) |
1 |
Bacteria |
  |
  |
4795 |
  |
Acidobacteria |
  |
14 |
  |
  |
Acidobacteria bacterium (aba) |
1 |
  |
  |
Solibacter usitatus (sus) |
13 |
  |
Actinobacteria |
  |
52 |
  |
  |
Arthrobacter sp. FB24 (art) |
1 |
  |
  |
Frankia alni (fal) |
6 |
  |
  |
Frankia sp. CcI3 (fra) |
2 |
  |
  |
Frankia sp. EAN1pec (fre) |
2 |
  |
  |
Mycobacterium abscessus ATCC 19977T (mab) |
1 |
  |
  |
Mycobacterium gilvum (mgi) |
2 |
  |
  |
Mycobacterium leprae (mle) |
1 |
  |
  |
Mycobacterium marinum M (mmi) |
4 |
  |
  |
Mycobacterium smegmatis (msm) |
1 |
  |
  |
Mycobacterium ulcerans (mul) |
1 |
  |
  |
Nocardioides sp. JS614 (nca) |
5 |
  |
  |
Rhodococcus sp. RHA1 (rha) |
6 |
  |
  |
Rubrobacter xylanophilus (rxy) |
4 |
  |
  |
Streptomyces coelicolor (sco) |
5 |
  |
  |
Streptomyces griseus (sgr) |
5 |
  |
  |
Streptomyces avermitilis (sma) |
4 |
  |
  |
Salinispora tropica (stp) |
2 |
  |
Bacteroides |
  |
12 |
  |
  |
Bacteroides fragilis NCTC9343 (bfs) |
1 |
  |
  |
Bacteroides thetaiotaomicron (bth) |
1 |
  |
  |
Bacteroides vulgatus (bvu) |
2 |
  |
  |
Cytophaga hutchinsonii (chu) |
2 |
  |
  |
Flavobacterium johnsoniae (fjo) |
3 |
  |
  |
Parabacteroides distasonis (pdi) |
1 |
  |
  |
Porphyromonas gingivalis ATCC 33277 (pgn) |
1 |
  |
  |
Salinibacter ruber (sru) |
1 |
  |
Cyanobacteria |
  |
4205 |
  |
  |
Acaryochloris marina (amr) |
915 |
  |
  |
Anabaena sp. PCC7120 (ana) |
417 |
  |
  |
Anabaena variabilis (ava) |
502 |
  |
  |
Cyanobacteria Yellowstone A-Prime (cya) |
40 |
  |
  |
Cyanobacteria Yellowstone B-Prime (cyb) |
45 |
  |
  |
Cyanothece sp. ATCC 51142 (cyt) |
208 |
  |
  |
Gloeobacter violaceus (gvi) |
113 |
  |
  |
Microcystis aeruginosa (mar) |
202 |
  |
  |
Nostoc punctiforme (npu) |
764 |
  |
  |
Prochlorococcus marinus MIT 9303 (pmf) |
6 |
  |
  |
Synechococcus elongatus PCC6301 (syc) |
2 |
  |
  |
Synechococcus sp. CC9605 (syd) |
3 |
  |
  |
Synechococcus elongatus PCC7942 (syf) |
74 |
  |
  |
Synechococcus sp. CC9311 (syg) |
1 |
  |
  |
Synechocystis sp. PCC6803 (syn) |
73 |
  |
  |
Synechococcus sp. PCC7002 (syp) |
86 |
  |
  |
Synechococcus sp. RCC307 (syr) |
1 |
  |
  |
Synechococcus sp. WH7803 (syx) |
1 |
  |
  |
Thermosynechococcus elongatus (tel) |
618 |
  |
  |
Trichodesmium erythraeum (ter) |
134 |
  |
Deinococcus-Thermus |
  |
7 |
  |
  |
Deinococcus geothermalis (dge) |
1 |
  |
  |
Deinococcus radiodurans (dra) |
3 |
  |
  |
Thermus thermophilus HB27 (tth) |
2 |
  |
  |
Thermus thermophilus HB8 (ttj) |
1 |
  |
Firmicutes |
  |
60 |
  |
  |
Alkaliphilus metalliredigens (amt) |
2 |
  |
  |
Bacillus amyloliquefaciens (bay) |
3 |
  |
  |
Bacillus cereus ATCC 10987 (bca) |
3 |
  |
  |
Bacillus cereus ATCC 14579 (bce) |
1 |
  |
  |
Bacillus clausii (bcl) |
1 |
  |
  |
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
1 |
  |
  |
Bacillus cereus ZK (bcz) |
1 |
  |
  |
Bacillus licheniformis DSM13 (bld) |
1 |
  |
  |
Bacillus pumilus (bpu) |
1 |
  |
  |
Bacillus subtilis (bsu) |
1 |
  |
  |
Bacillus thuringiensis Al Hakam (btl) |
1 |
  |
  |
Bacillus weihenstephanensis (bwe) |
1 |
  |
  |
Clostridium acetobutylicum (cac) |
1 |
  |
  |
Clostridium botulinum B1 Okra (cbb) |
1 |
  |
  |
Clostridium botulinum E3 (cbt) |
1 |
  |
  |
Carboxydothermus hydrogenoformans (chy) |
1 |
  |
  |
Clostridium phytofermentans (cpy) |
2 |
  |
  |
Clostridium thermocellum (cth) |
8 |
  |
  |
Candidatus Desulforudis audaxviator (dau) |
2 |
  |
  |
Desulfotomaculum reducens (drm) |
2 |
  |
  |
Desulfitobacterium hafniense (dsy) |
2 |
  |
  |
Geobacillus thermodenitrificans (gtn) |
1 |
  |
  |
Lactobacillus delbrueckii ATCC BAA-365 (lbu) |
1 |
  |
  |
Listeria monocytogenes EGD-e (lmo) |
1 |
  |
  |
Moorella thermoacetica (mta) |
3 |
  |
  |
Natranaerobius thermophilus (nth) |
3 |
  |
  |
Pelotomaculum thermopropionicum (pth) |
6 |
  |
  |
Streptococcus agalactiae A909 (serotype Ia) (sak) |
1 |
  |
  |
Staphylococcus epidermidis RP62A (ser) |
2 |
  |
  |
Streptococcus equi (sez) |
1 |
  |
  |
Symbiobacterium thermophilum (sth) |
4 |
  |
Green nonsulfur bacteria |
  |
39 |
  |
  |
Chloroflexus aurantiacus (cau) |
5 |
  |
  |
Dehalococcoides sp. CBDB1 (deh) |
1 |
  |
  |
Dehalococcoides ethenogenes (det) |
1 |
  |
  |
Herpetosiphon aurantiacus (hau) |
9 |
  |
  |
Roseiflexus castenholzii DSM13941 (rca) |
12 |
  |
  |
Roseiflexus sp. RS-1 (rrs) |
11 |
  |
Green sulfur bacteria |
  |
25 |
  |
  |
Chlorobium chlorochromatii (cch) |
5 |
  |
  |
Chlorobium limicola (cli) |
1 |
  |
  |
Chlorobium phaeobacteroides BS1 (cpb) |
1 |
  |
  |
Chlorobaculum parvum NCIB 8327 (cpc) |
2 |
  |
  |
Chlorobium phaeobacteroides DSM 266 (cph) |
5 |
  |
  |
Chloroherpeton thalassium (cts) |
7 |
  |
  |
Prosthecochloris aestuarii (paa) |
1 |
  |
  |
Pelodictyon phaeoclathratiforme (pph) |
1 |
  |
  |
Prosthecochloris vibrioformis (pvi) |
2 |
  |
Hyperthermophilic bacteria |
  |
3 |
  |
  |
Aquifex aeolicus (aae) |
1 |
  |
  |
Thermotoga lettingae (tle) |
1 |
  |
  |
Thermodesulfovibrio yellowstonii (tye) |
1 |
  |
Planctomyces |
  |
7 |
  |
  |
Rhodopirellula baltica (rba) |
7 |
  |
Proteobacteria |
  |
346 |
  |
  |
Acinetobacter baumannii ACICU (abc) |
2 |
  |
  |
Alcanivorax borkumensis (abo) |
1 |
  |
  |
Acinetobacter sp. ADP1 (aci) |
1 |
  |
  |
Anaeromyxobacter dehalogenans (ade) |
1 |
  |
  |
Acidithiobacillus ferrooxidans (afe) |
2 |
  |
  |
Anaeromyxobacter sp. Fw109-5 (afw) |
3 |
  |
  |
Acidovorax sp. JS42 (ajs) |
8 |
  |
  |
Anaeromyxobacter sp. K (ank) |
2 |
  |
  |
Agrobacterium tumefaciens C58 (Cereon) (atc) |
2 |
  |
  |
Azorhizobium caulinodans (azc) |
1 |
  |
  |
Azoarcus sp. BH72 (azo) |
4 |
  |
  |
Bdellovibrio bacteriovorus (bba) |
1 |
  |
  |
Bordetella bronchiseptica (bbr) |
1 |
  |
  |
Bradyrhizobium sp. BTAi1 (bbt) |
1 |
  |
  |
Burkholderia cenocepacia J2315 (bcj) |
1 |
  |
  |
Beijerinckia indica (bid) |
9 |
  |
  |
Bradyrhizobium japonicum (bja) |
1 |
  |
  |
Burkholderia multivorans ATCC 17616 (JGI) (bmu) |
1 |
  |
  |
Burkholderia mallei SAVP1 (bmv) |
1 |
  |
  |
Burkholderia pseudomallei 668 (bpd) |
2 |
  |
  |
Burkholderia phymatum (bph) |
3 |
  |
  |
Burkholderia pseudomallei 1106a (bpl) |
3 |
  |
  |
Burkholderia pseudomallei K96243 (bps) |
4 |
  |
  |
Bordetella petrii (bpt) |
1 |
  |
  |
Burkholderia phytofirmans (bpy) |
3 |
  |
  |
Bradyrhizobium sp. ORS278 (bra) |
2 |
  |
  |
Burkholderia sp. 383 (bur) |
3 |
  |
  |
Burkholderia vietnamiensis (bvi) |
3 |
  |
  |
Caulobacter sp. K31 (cak) |
1 |
  |
  |
Coxiella burnetii Dugway 5J108-111 (cbd) |
1 |
  |
  |
Campylobacter jejuni subsp. doylei 269.97 (cjd) |
1 |
  |
  |
Citrobacter koseri ATCC BAA-895 (cko) |
1 |
  |
  |
Colwellia psychrerythraea (cps) |
3 |
  |
  |
Chromohalobacter salexigens (csa) |
2 |
  |
  |
Chromobacterium violaceum (cvi) |
4 |
  |
  |
Candidatus Desulfococcus oleovorans (dol) |
1 |
  |
  |
Dinoroseobacter shibae (dsh) |
1 |
  |
  |
Desulfovibrio vulgaris DP4 (dvl) |
1 |
  |
  |
Azoarcus sp. EbN1 (eba) |
2 |
  |
  |
Escherichia coli CFT073 (UPEC) (ecc) |
2 |
  |
  |
Escherichia coli UTI89 (UPEC) (eci) |
1 |
  |
  |
Escherichia coli 536 (UPEC) (ecp) |
1 |
  |
  |
Erythrobacter litoralis (eli) |
1 |
  |
  |
Francisella philomiragia (fph) |
1 |
  |
  |
Francisella tularensis subsp. novicida U112 (ftn) |
1 |
  |
  |
Granulobacter bethesdensis (gbe) |
1 |
  |
  |
Geobacter bemidjiensis (gbm) |
5 |
  |
  |
Gluconacetobacter diazotrophicus (gdi) |
1 |
  |
  |
Geobacter lovleyi (glo) |
1 |
  |
  |
Geobacter metallireducens (gme) |
6 |
  |
  |
Geobacter sulfurreducens (gsu) |
4 |
  |
  |
Geobacter uraniumreducens (gur) |
2 |
  |
  |
Herminiimonas arsenicoxydans (har) |
5 |
  |
  |
Hahella chejuensis (hch) |
8 |
  |
  |
Halorhodospira halophila (hha) |
1 |
  |
  |
Hyphomonas neptunium (hne) |
2 |
  |
  |
Helicobacter pylori J99 (hpj) |
1 |
  |
  |
Idiomarina loihiensis (ilo) |
1 |
  |
  |
Jannaschia sp. CCS1 (jan) |
1 |
  |
  |
Klebsiella pneumoniae 342 (kpe) |
2 |
  |
  |
Leptothrix cholodnii (lch) |
2 |
  |
  |
Legionella pneumophila Corby (lpc) |
2 |
  |
  |
Legionella pneumophila Lens (lpf) |
2 |
  |
  |
Legionella pneumophila Philadelphia 1 (lpn) |
1 |
  |
  |
Magnetospirillum magneticum (mag) |
4 |
  |
  |
Marinobacter aquaeolei (maq) |
2 |
  |
  |
Methylococcus capsulatus (mca) |
9 |
  |
  |
Mesorhizobium sp. BNC1 (mes) |
3 |
  |
  |
Methylobacterium sp. 4-46 (met) |
9 |
  |
  |
Methylobacterium extorquens (mex) |
2 |
  |
  |
Methylobacillus flagellatus (mfa) |
1 |
  |
  |
Mesorhizobium loti (mlo) |
4 |
  |
  |
Minibacterium massiliensis (mms) |
4 |
  |
  |
Marinomonas sp. MWYL1 (mmw) |
1 |
  |
  |
Methylobacterium populi (mpo) |
2 |
  |
  |
Methylibium petroleiphilum (mpt) |
1 |
  |
  |
Methylobacterium radiotolerans (mrd) |
1 |
  |
  |
Myxococcus xanthus (mxa) |
12 |
  |
  |
Novosphingobium aromaticivorans (nar) |
2 |
  |
  |
Nitrosomonas europaea (neu) |
1 |
  |
  |
Nitrobacter hamburgensis (nha) |
1 |
  |
  |
Nitratiruptor sp. SB155-2 (nis) |
1 |
  |
  |
Nitrosospira multiformis (nmu) |
4 |
  |
  |
Nitrosococcus oceani (noc) |
6 |
  |
  |
Pseudoalteromonas atlantica (pat) |
2 |
  |
  |
Pelobacter carbinolicus (pca) |
2 |
  |
  |
Pseudomonas fluorescens Pf0-1 (pfo) |
2 |
  |
  |
Pseudoalteromonas haloplanktis (pha) |
1 |
  |
  |
Psychromonas ingrahamii (pin) |
1 |
  |
  |
Polaromonas naphthalenivorans (pna) |
3 |
  |
  |
Polynucleobacter necessarius (pne) |
1 |
  |
  |
Polynucleobacter sp. QLW-P1DMWA-1 (pnu) |
1 |
  |
  |
Polaromonas sp. JS666 (pol) |
2 |
  |
  |
Pelobacter propionicus (ppd) |
3 |
  |
  |
Pseudomonas putida GB-1 (ppg) |
1 |
  |
  |
Photobacterium profundum (ppr) |
2 |
  |
  |
Pseudomonas stutzeri (psa) |
4 |
  |
  |
Pseudomonas syringae pv. syringae B728a (psb) |
1 |
  |
  |
Pseudomonas syringae pv. phaseolicola 1448A (psp) |
1 |
  |
  |
Pseudomonas syringae pv. tomato DC3000 (pst) |
1 |
  |
  |
Phenylobacterium zucineum (pzu) |
3 |
  |
  |
Rhodospirillum centenum (rce) |
5 |
  |
  |
Roseobacter denitrificans (rde) |
2 |
  |
  |
Rhizobium etli CIAT 652 (rec) |
1 |
  |
  |
Ralstonia eutropha H16 (reh) |
1 |
  |
  |
Rhizobium etli CFN 42 (ret) |
2 |
  |
  |
Ralstonia eutropha JMP134 (reu) |
3 |
  |
  |
Rhodoferax ferrireducens (rfr) |
2 |
  |
  |
Rhizobium leguminosarum (rle) |
1 |
  |
  |
Rhizobium leguminosarum bv. trifolii WSM2304 (rlt) |
2 |
  |
  |
Rhodopseudomonas palustris CGA009 (rpa) |
1 |
  |
  |
Rhodopseudomonas palustris BisB18 (rpc) |
3 |
  |
  |
Rhodopseudomonas palustris BisA53 (rpe) |
2 |
  |
  |
Rhodospirillum rubrum (rru) |
2 |
  |
  |
Rhodobacter sphaeroides ATCC 17029 (rsh) |
1 |
  |
  |
Ralstonia solanacearum (rso) |
3 |
  |
  |
Rhodobacter sphaeroides ATCC 17025 (rsq) |
1 |
  |
  |
Shewanella baltica OS185 (sbm) |
1 |
  |
  |
Sorangium cellulosum (scl) |
19 |
  |
  |
Saccharophagus degradans (sde) |
2 |
  |
  |
Salmonella enterica subsp. enterica serovar Heidelberg (seh) |
1 |
  |
  |
Shigella flexneri 301 (serotype 2a) (sfl) |
1 |
  |
  |
Syntrophobacter fumaroxidans (sfu) |
6 |
  |
  |
Shewanella halifaxensis (shl) |
1 |
  |
  |
Shewanella sp. W3-18-1 (shw) |
3 |
  |
  |
Sinorhizobium medicae (smd) |
1 |
  |
  |
Sinorhizobium meliloti (sme) |
8 |
  |
  |
Stenotrophomonas maltophilia (sml) |
1 |
  |
  |
Stenotrophomonas maltophilia R551-3 (smt) |
1 |
  |
  |
Serratia proteamaculans (spe) |
1 |
  |
  |
Shewanella sediminis (sse) |
2 |
  |
  |
Sulfurovum sp. NBC37-1 (sun) |
2 |
  |
  |
Shewanella woodyi ATCC51908 (swd) |
4 |
  |
  |
Sphingomonas wittichii (swi) |
4 |
  |
  |
Shewanella piezotolerans WP3 (swp) |
1 |
  |
  |
Thiobacillus denitrificans (tbd) |
1 |
  |
  |
Thiomicrospira crunogena (tcx) |
1 |
  |
  |
Vibrio cholerae O395 (vco) |
1 |
  |
  |
Vibrio fischeri MJ11 (vfm) |
1 |
  |
  |
Vibrio parahaemolyticus (vpa) |
1 |
  |
  |
Xanthobacter autotrophicus (xau) |
2 |
  |
  |
Xanthomonas campestris pv. campestris B100 (xca) |
4 |
  |
  |
Xanthomonas campestris pv. vesicatoria (xcv) |
1 |
  |
  |
Xylella fastidiosa 9a5c (xfa) |
1 |
  |
  |
Yersinia pseudotuberculosis IP31758 (ypi) |
1 |
  |
Spirochete |
  |
7 |
  |
  |
Leptospira biflexa serovar Patoc Patoc 1 (Ames) (lbf) |
3 |
  |
  |
Leptospira borgpetersenii L550 (lbl) |
1 |
  |
  |
Leptospira interrogans serovar Copenhageni (lic) |
2 |
  |
  |
Leptospira interrogans serovar lai (lil) |
1 |
  |
Synergistetes |
  |
5 |
  |
  |
Syntrophomonas wolfei (swo) |
5 |
  |
Tenericutes |
  |
1 |
  |
  |
Candidatus Phytoplasma mali (pml) |
1 |
  |
Verrucomicrobia |
  |
12 |
  |
  |
Methylacidiphilum infernorum (min) |
3 |
  |
  |
Opitutus terrae (ote) |
9 |
Eukaryotes |
  |
  |
41 |
  |
Animals |
  |
16 |
  |
  |
Canis familiaris (dog) (cfa) |
1 |
  |
  |
Drosophila ananassae (dan) |
1 |
  |
  |
Drosophila melanogaster (fruit fly) (dme) |
1 |
  |
  |
Drosophila pseudoobscura (dpo) |
1 |
  |
  |
Danio rerio (zebrafish) (dre) |
1 |
  |
  |
Drosophila willistoni (dwi) |
1 |
  |
  |
Drosophila yakuba (dya) |
1 |
  |
  |
Gallus gallus (chicken) (gga) |
1 |
  |
  |
Nematostella vectensis (sea anemone) (nve) |
4 |
  |
  |
Ornithorhynchus anatinus (platypus) (oaa) |
1 |
  |
  |
Rattus norvegicus (rat) (rno) |
3 |
  |
Fungi |
  |
6 |
  |
  |
Aspergillus niger (ang) |
1 |
  |
  |
Aspergillus oryzae (aor) |
1 |
  |
  |
Candida albicans (cal) |
1 |
  |
  |
Candida glabrata (cgr) |
1 |
  |
  |
Neurospora crassa (ncr) |
1 |
  |
  |
Pichia stipitis (pic) |
1 |
  |
Plants |
  |
6 |
  |
  |
Cyanidioschyzon merolae (cme) |
1 |
  |
  |
Chlamydomonas reinhardtii (cre) |
2 |
  |
  |
Oryza sativa japonica (Japanese rice) (osa) |
1 |
  |
  |
Physcomitrella patens subsp. patens (ppp) |
2 |
  |
Protists |
  |
13 |
  |
  |
Dictyostelium discoideum (ddi) |
5 |
  |
  |
Monosiga brevicollis (mbr) |
1 |
  |
  |
Plasmodium falciparum Dd2 (pfd) |
1 |
  |
  |
Plasmodium falciparum HB3 (pfh) |
1 |
  |
  |
Trypanosoma brucei (tbr) |
1 |
  |
  |
Trichomonas vaginalis (tva) |
4 |
NULL |
  |
  |
344 |
TOTAL |
  |
  |
5220 |