| Kingdom |
Category |
Genus/Species |
Count |
|
|
|
7 |
| Archaea |
|
|
33 |
| |
|
|
7 |
| |
Crenarchaeota |
|
1 |
| |
|
Nitrosopumilus maritimus (nmr) |
1 |
| |
Euryarchaeota |
|
31 |
| |
|
Haloarcula marismortui (hma) |
1 |
| |
|
Haloquadratum walsbyi (hwa) |
1 |
| |
|
Methanosarcina barkeri (mba) |
3 |
| |
|
Candidatus Methanoregula boonei (mbn) |
5 |
| |
|
Methanoculleus marisnigri (mem) |
2 |
| |
|
Methanospirillum hungatei (mhu) |
5 |
| |
|
Methanococcus jannaschii (mja) |
1 |
| |
|
Methanosarcina mazei (mma) |
3 |
| |
|
Methanobacterium thermoautotrophicum (mth) |
2 |
| |
|
Pyrococcus abyssi (pab) |
2 |
| |
|
Pyrococcus furiosus (pfu) |
1 |
| |
|
Uncultured methanogenic archaeon RC-I (rci) |
3 |
| |
|
Thermococcus onnurineus (ton) |
2 |
| |
Korarchaeota |
|
1 |
| |
|
Candidatus Korarchaeum cryptofilum (kcr) |
1 |
| Bacteria |
|
|
4795 |
| |
Acidobacteria |
|
14 |
| |
|
Acidobacteria bacterium (aba) |
1 |
| |
|
Solibacter usitatus (sus) |
13 |
| |
Actinobacteria |
|
52 |
| |
|
Arthrobacter sp. FB24 (art) |
1 |
| |
|
Frankia alni (fal) |
6 |
| |
|
Frankia sp. CcI3 (fra) |
2 |
| |
|
Frankia sp. EAN1pec (fre) |
2 |
| |
|
Mycobacterium abscessus ATCC 19977T (mab) |
1 |
| |
|
Mycobacterium gilvum (mgi) |
2 |
| |
|
Mycobacterium leprae (mle) |
1 |
| |
|
Mycobacterium marinum M (mmi) |
4 |
| |
|
Mycobacterium smegmatis (msm) |
1 |
| |
|
Mycobacterium ulcerans (mul) |
1 |
| |
|
Nocardioides sp. JS614 (nca) |
5 |
| |
|
Rhodococcus sp. RHA1 (rha) |
6 |
| |
|
Rubrobacter xylanophilus (rxy) |
4 |
| |
|
Streptomyces coelicolor (sco) |
5 |
| |
|
Streptomyces griseus (sgr) |
5 |
| |
|
Streptomyces avermitilis (sma) |
4 |
| |
|
Salinispora tropica (stp) |
2 |
| |
Bacteroides |
|
12 |
| |
|
Bacteroides fragilis NCTC9343 (bfs) |
1 |
| |
|
Bacteroides thetaiotaomicron (bth) |
1 |
| |
|
Bacteroides vulgatus (bvu) |
2 |
| |
|
Cytophaga hutchinsonii (chu) |
2 |
| |
|
Flavobacterium johnsoniae (fjo) |
3 |
| |
|
Parabacteroides distasonis (pdi) |
1 |
| |
|
Porphyromonas gingivalis ATCC 33277 (pgn) |
1 |
| |
|
Salinibacter ruber (sru) |
1 |
| |
Cyanobacteria |
|
4205 |
| |
|
Acaryochloris marina (amr) |
915 |
| |
|
Anabaena sp. PCC7120 (ana) |
417 |
| |
|
Anabaena variabilis (ava) |
502 |
| |
|
Cyanobacteria Yellowstone A-Prime (cya) |
40 |
| |
|
Cyanobacteria Yellowstone B-Prime (cyb) |
45 |
| |
|
Cyanothece sp. ATCC 51142 (cyt) |
208 |
| |
|
Gloeobacter violaceus (gvi) |
113 |
| |
|
Microcystis aeruginosa (mar) |
202 |
| |
|
Nostoc punctiforme (npu) |
764 |
| |
|
Prochlorococcus marinus MIT 9303 (pmf) |
6 |
| |
|
Synechococcus elongatus PCC6301 (syc) |
2 |
| |
|
Synechococcus sp. CC9605 (syd) |
3 |
| |
|
Synechococcus elongatus PCC7942 (syf) |
74 |
| |
|
Synechococcus sp. CC9311 (syg) |
1 |
| |
|
Synechocystis sp. PCC6803 (syn) |
73 |
| |
|
Synechococcus sp. PCC7002 (syp) |
86 |
| |
|
Synechococcus sp. RCC307 (syr) |
1 |
| |
|
Synechococcus sp. WH7803 (syx) |
1 |
| |
|
Thermosynechococcus elongatus (tel) |
618 |
| |
|
Trichodesmium erythraeum (ter) |
134 |
| |
Deinococcus-Thermus |
|
7 |
| |
|
Deinococcus geothermalis (dge) |
1 |
| |
|
Deinococcus radiodurans (dra) |
3 |
| |
|
Thermus thermophilus HB27 (tth) |
2 |
| |
|
Thermus thermophilus HB8 (ttj) |
1 |
| |
Firmicutes |
|
60 |
| |
|
Alkaliphilus metalliredigens (amt) |
2 |
| |
|
Bacillus amyloliquefaciens (bay) |
3 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
3 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
1 |
| |
|
Bacillus clausii (bcl) |
1 |
| |
|
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
1 |
| |
|
Bacillus cereus ZK (bcz) |
1 |
| |
|
Bacillus licheniformis DSM13 (bld) |
1 |
| |
|
Bacillus pumilus (bpu) |
1 |
| |
|
Bacillus subtilis (bsu) |
1 |
| |
|
Bacillus thuringiensis Al Hakam (btl) |
1 |
| |
|
Bacillus weihenstephanensis (bwe) |
1 |
| |
|
Clostridium acetobutylicum (cac) |
1 |
| |
|
Clostridium botulinum B1 Okra (cbb) |
1 |
| |
|
Clostridium botulinum E3 (cbt) |
1 |
| |
|
Carboxydothermus hydrogenoformans (chy) |
1 |
| |
|
Clostridium phytofermentans (cpy) |
2 |
| |
|
Clostridium thermocellum (cth) |
8 |
| |
|
Candidatus Desulforudis audaxviator (dau) |
2 |
| |
|
Desulfotomaculum reducens (drm) |
2 |
| |
|
Desulfitobacterium hafniense (dsy) |
2 |
| |
|
Geobacillus thermodenitrificans (gtn) |
1 |
| |
|
Lactobacillus delbrueckii ATCC BAA-365 (lbu) |
1 |
| |
|
Listeria monocytogenes EGD-e (lmo) |
1 |
| |
|
Moorella thermoacetica (mta) |
3 |
| |
|
Natranaerobius thermophilus (nth) |
3 |
| |
|
Pelotomaculum thermopropionicum (pth) |
6 |
| |
|
Streptococcus agalactiae A909 (serotype Ia) (sak) |
1 |
| |
|
Staphylococcus epidermidis RP62A (ser) |
2 |
| |
|
Streptococcus equi (sez) |
1 |
| |
|
Symbiobacterium thermophilum (sth) |
4 |
| |
Green nonsulfur bacteria |
|
39 |
| |
|
Chloroflexus aurantiacus (cau) |
5 |
| |
|
Dehalococcoides sp. CBDB1 (deh) |
1 |
| |
|
Dehalococcoides ethenogenes (det) |
1 |
| |
|
Herpetosiphon aurantiacus (hau) |
9 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
12 |
| |
|
Roseiflexus sp. RS-1 (rrs) |
11 |
| |
Green sulfur bacteria |
|
25 |
| |
|
Chlorobium chlorochromatii (cch) |
5 |
| |
|
Chlorobium limicola (cli) |
1 |
| |
|
Chlorobium phaeobacteroides BS1 (cpb) |
1 |
| |
|
Chlorobaculum parvum NCIB 8327 (cpc) |
2 |
| |
|
Chlorobium phaeobacteroides DSM 266 (cph) |
5 |
| |
|
Chloroherpeton thalassium (cts) |
7 |
| |
|
Prosthecochloris aestuarii (paa) |
1 |
| |
|
Pelodictyon phaeoclathratiforme (pph) |
1 |
| |
|
Prosthecochloris vibrioformis (pvi) |
2 |
| |
Hyperthermophilic bacteria |
|
3 |
| |
|
Aquifex aeolicus (aae) |
1 |
| |
|
Thermotoga lettingae (tle) |
1 |
| |
|
Thermodesulfovibrio yellowstonii (tye) |
1 |
| |
Planctomyces |
|
7 |
| |
|
Rhodopirellula baltica (rba) |
7 |
| |
Proteobacteria |
|
346 |
| |
|
Acinetobacter baumannii ACICU (abc) |
2 |
| |
|
Alcanivorax borkumensis (abo) |
1 |
| |
|
Acinetobacter sp. ADP1 (aci) |
1 |
| |
|
Anaeromyxobacter dehalogenans (ade) |
1 |
| |
|
Acidithiobacillus ferrooxidans (afe) |
2 |
| |
|
Anaeromyxobacter sp. Fw109-5 (afw) |
3 |
| |
|
Acidovorax sp. JS42 (ajs) |
8 |
| |
|
Anaeromyxobacter sp. K (ank) |
2 |
| |
|
Agrobacterium tumefaciens C58 (Cereon) (atc) |
2 |
| |
|
Azorhizobium caulinodans (azc) |
1 |
| |
|
Azoarcus sp. BH72 (azo) |
4 |
| |
|
Bdellovibrio bacteriovorus (bba) |
1 |
| |
|
Bordetella bronchiseptica (bbr) |
1 |
| |
|
Bradyrhizobium sp. BTAi1 (bbt) |
1 |
| |
|
Burkholderia cenocepacia J2315 (bcj) |
1 |
| |
|
Beijerinckia indica (bid) |
9 |
| |
|
Bradyrhizobium japonicum (bja) |
1 |
| |
|
Burkholderia multivorans ATCC 17616 (JGI) (bmu) |
1 |
| |
|
Burkholderia mallei SAVP1 (bmv) |
1 |
| |
|
Burkholderia pseudomallei 668 (bpd) |
2 |
| |
|
Burkholderia phymatum (bph) |
3 |
| |
|
Burkholderia pseudomallei 1106a (bpl) |
3 |
| |
|
Burkholderia pseudomallei K96243 (bps) |
4 |
| |
|
Bordetella petrii (bpt) |
1 |
| |
|
Burkholderia phytofirmans (bpy) |
3 |
| |
|
Bradyrhizobium sp. ORS278 (bra) |
2 |
| |
|
Burkholderia sp. 383 (bur) |
3 |
| |
|
Burkholderia vietnamiensis (bvi) |
3 |
| |
|
Caulobacter sp. K31 (cak) |
1 |
| |
|
Coxiella burnetii Dugway 5J108-111 (cbd) |
1 |
| |
|
Campylobacter jejuni subsp. doylei 269.97 (cjd) |
1 |
| |
|
Citrobacter koseri ATCC BAA-895 (cko) |
1 |
| |
|
Colwellia psychrerythraea (cps) |
3 |
| |
|
Chromohalobacter salexigens (csa) |
2 |
| |
|
Chromobacterium violaceum (cvi) |
4 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
1 |
| |
|
Dinoroseobacter shibae (dsh) |
1 |
| |
|
Desulfovibrio vulgaris DP4 (dvl) |
1 |
| |
|
Azoarcus sp. EbN1 (eba) |
2 |
| |
|
Escherichia coli CFT073 (UPEC) (ecc) |
2 |
| |
|
Escherichia coli UTI89 (UPEC) (eci) |
1 |
| |
|
Escherichia coli 536 (UPEC) (ecp) |
1 |
| |
|
Erythrobacter litoralis (eli) |
1 |
| |
|
Francisella philomiragia (fph) |
1 |
| |
|
Francisella tularensis subsp. novicida U112 (ftn) |
1 |
| |
|
Granulobacter bethesdensis (gbe) |
1 |
| |
|
Geobacter bemidjiensis (gbm) |
5 |
| |
|
Gluconacetobacter diazotrophicus (gdi) |
1 |
| |
|
Geobacter lovleyi (glo) |
1 |
| |
|
Geobacter metallireducens (gme) |
6 |
| |
|
Geobacter sulfurreducens (gsu) |
4 |
| |
|
Geobacter uraniumreducens (gur) |
2 |
| |
|
Herminiimonas arsenicoxydans (har) |
5 |
| |
|
Hahella chejuensis (hch) |
8 |
| |
|
Halorhodospira halophila (hha) |
1 |
| |
|
Hyphomonas neptunium (hne) |
2 |
| |
|
Helicobacter pylori J99 (hpj) |
1 |
| |
|
Idiomarina loihiensis (ilo) |
1 |
| |
|
Jannaschia sp. CCS1 (jan) |
1 |
| |
|
Klebsiella pneumoniae 342 (kpe) |
2 |
| |
|
Leptothrix cholodnii (lch) |
2 |
| |
|
Legionella pneumophila Corby (lpc) |
2 |
| |
|
Legionella pneumophila Lens (lpf) |
2 |
| |
|
Legionella pneumophila Philadelphia 1 (lpn) |
1 |
| |
|
Magnetospirillum magneticum (mag) |
4 |
| |
|
Marinobacter aquaeolei (maq) |
2 |
| |
|
Methylococcus capsulatus (mca) |
9 |
| |
|
Mesorhizobium sp. BNC1 (mes) |
3 |
| |
|
Methylobacterium sp. 4-46 (met) |
9 |
| |
|
Methylobacterium extorquens (mex) |
2 |
| |
|
Methylobacillus flagellatus (mfa) |
1 |
| |
|
Mesorhizobium loti (mlo) |
4 |
| |
|
Minibacterium massiliensis (mms) |
4 |
| |
|
Marinomonas sp. MWYL1 (mmw) |
1 |
| |
|
Methylobacterium populi (mpo) |
2 |
| |
|
Methylibium petroleiphilum (mpt) |
1 |
| |
|
Methylobacterium radiotolerans (mrd) |
1 |
| |
|
Myxococcus xanthus (mxa) |
12 |
| |
|
Novosphingobium aromaticivorans (nar) |
2 |
| |
|
Nitrosomonas europaea (neu) |
1 |
| |
|
Nitrobacter hamburgensis (nha) |
1 |
| |
|
Nitratiruptor sp. SB155-2 (nis) |
1 |
| |
|
Nitrosospira multiformis (nmu) |
4 |
| |
|
Nitrosococcus oceani (noc) |
6 |
| |
|
Pseudoalteromonas atlantica (pat) |
2 |
| |
|
Pelobacter carbinolicus (pca) |
2 |
| |
|
Pseudomonas fluorescens Pf0-1 (pfo) |
2 |
| |
|
Pseudoalteromonas haloplanktis (pha) |
1 |
| |
|
Psychromonas ingrahamii (pin) |
1 |
| |
|
Polaromonas naphthalenivorans (pna) |
3 |
| |
|
Polynucleobacter necessarius (pne) |
1 |
| |
|
Polynucleobacter sp. QLW-P1DMWA-1 (pnu) |
1 |
| |
|
Polaromonas sp. JS666 (pol) |
2 |
| |
|
Pelobacter propionicus (ppd) |
3 |
| |
|
Pseudomonas putida GB-1 (ppg) |
1 |
| |
|
Photobacterium profundum (ppr) |
2 |
| |
|
Pseudomonas stutzeri (psa) |
4 |
| |
|
Pseudomonas syringae pv. syringae B728a (psb) |
1 |
| |
|
Pseudomonas syringae pv. phaseolicola 1448A (psp) |
1 |
| |
|
Pseudomonas syringae pv. tomato DC3000 (pst) |
1 |
| |
|
Phenylobacterium zucineum (pzu) |
3 |
| |
|
Rhodospirillum centenum (rce) |
5 |
| |
|
Roseobacter denitrificans (rde) |
2 |
| |
|
Rhizobium etli CIAT 652 (rec) |
1 |
| |
|
Ralstonia eutropha H16 (reh) |
1 |
| |
|
Rhizobium etli CFN 42 (ret) |
2 |
| |
|
Ralstonia eutropha JMP134 (reu) |
3 |
| |
|
Rhodoferax ferrireducens (rfr) |
2 |
| |
|
Rhizobium leguminosarum (rle) |
1 |
| |
|
Rhizobium leguminosarum bv. trifolii WSM2304 (rlt) |
2 |
| |
|
Rhodopseudomonas palustris CGA009 (rpa) |
1 |
| |
|
Rhodopseudomonas palustris BisB18 (rpc) |
3 |
| |
|
Rhodopseudomonas palustris BisA53 (rpe) |
2 |
| |
|
Rhodospirillum rubrum (rru) |
2 |
| |
|
Rhodobacter sphaeroides ATCC 17029 (rsh) |
1 |
| |
|
Ralstonia solanacearum (rso) |
3 |
| |
|
Rhodobacter sphaeroides ATCC 17025 (rsq) |
1 |
| |
|
Shewanella baltica OS185 (sbm) |
1 |
| |
|
Sorangium cellulosum (scl) |
19 |
| |
|
Saccharophagus degradans (sde) |
2 |
| |
|
Salmonella enterica subsp. enterica serovar Heidelberg (seh) |
1 |
| |
|
Shigella flexneri 301 (serotype 2a) (sfl) |
1 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
6 |
| |
|
Shewanella halifaxensis (shl) |
1 |
| |
|
Shewanella sp. W3-18-1 (shw) |
3 |
| |
|
Sinorhizobium medicae (smd) |
1 |
| |
|
Sinorhizobium meliloti (sme) |
8 |
| |
|
Stenotrophomonas maltophilia (sml) |
1 |
| |
|
Stenotrophomonas maltophilia R551-3 (smt) |
1 |
| |
|
Serratia proteamaculans (spe) |
1 |
| |
|
Shewanella sediminis (sse) |
2 |
| |
|
Sulfurovum sp. NBC37-1 (sun) |
2 |
| |
|
Shewanella woodyi ATCC51908 (swd) |
4 |
| |
|
Sphingomonas wittichii (swi) |
4 |
| |
|
Shewanella piezotolerans WP3 (swp) |
1 |
| |
|
Thiobacillus denitrificans (tbd) |
1 |
| |
|
Thiomicrospira crunogena (tcx) |
1 |
| |
|
Vibrio cholerae O395 (vco) |
1 |
| |
|
Vibrio fischeri MJ11 (vfm) |
1 |
| |
|
Vibrio parahaemolyticus (vpa) |
1 |
| |
|
Xanthobacter autotrophicus (xau) |
2 |
| |
|
Xanthomonas campestris pv. campestris B100 (xca) |
4 |
| |
|
Xanthomonas campestris pv. vesicatoria (xcv) |
1 |
| |
|
Xylella fastidiosa 9a5c (xfa) |
1 |
| |
|
Yersinia pseudotuberculosis IP31758 (ypi) |
1 |
| |
Spirochete |
|
7 |
| |
|
Leptospira biflexa serovar Patoc Patoc 1 (Ames) (lbf) |
3 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
1 |
| |
|
Leptospira interrogans serovar Copenhageni (lic) |
2 |
| |
|
Leptospira interrogans serovar lai (lil) |
1 |
| |
Synergistetes |
|
5 |
| |
|
Syntrophomonas wolfei (swo) |
5 |
| |
Tenericutes |
|
1 |
| |
|
Candidatus Phytoplasma mali (pml) |
1 |
| |
Verrucomicrobia |
|
12 |
| |
|
Methylacidiphilum infernorum (min) |
3 |
| |
|
Opitutus terrae (ote) |
9 |
| Eukaryotes |
|
|
41 |
| |
Animals |
|
16 |
| |
|
Canis familiaris (dog) (cfa) |
1 |
| |
|
Drosophila ananassae (dan) |
1 |
| |
|
Drosophila melanogaster (fruit fly) (dme) |
1 |
| |
|
Drosophila pseudoobscura (dpo) |
1 |
| |
|
Danio rerio (zebrafish) (dre) |
1 |
| |
|
Drosophila willistoni (dwi) |
1 |
| |
|
Drosophila yakuba (dya) |
1 |
| |
|
Gallus gallus (chicken) (gga) |
1 |
| |
|
Nematostella vectensis (sea anemone) (nve) |
4 |
| |
|
Ornithorhynchus anatinus (platypus) (oaa) |
1 |
| |
|
Rattus norvegicus (rat) (rno) |
3 |
| |
Fungi |
|
6 |
| |
|
Aspergillus niger (ang) |
1 |
| |
|
Aspergillus oryzae (aor) |
1 |
| |
|
Candida albicans (cal) |
1 |
| |
|
Candida glabrata (cgr) |
1 |
| |
|
Neurospora crassa (ncr) |
1 |
| |
|
Pichia stipitis (pic) |
1 |
| |
Plants |
|
6 |
| |
|
Cyanidioschyzon merolae (cme) |
1 |
| |
|
Chlamydomonas reinhardtii (cre) |
2 |
| |
|
Oryza sativa japonica (Japanese rice) (osa) |
1 |
| |
|
Physcomitrella patens subsp. patens (ppp) |
2 |
| |
Protists |
|
13 |
| |
|
Dictyostelium discoideum (ddi) |
5 |
| |
|
Monosiga brevicollis (mbr) |
1 |
| |
|
Plasmodium falciparum Dd2 (pfd) |
1 |
| |
|
Plasmodium falciparum HB3 (pfh) |
1 |
| |
|
Trypanosoma brucei (tbr) |
1 |
| |
|
Trichomonas vaginalis (tva) |
4 |
| NULL |
|
|
344 |
| TOTAL |
|
|
5220 |
![[space]](http://compbio.ornl.gov/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}