BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu0845
(335 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379376|ref|NP_721331.1| hypothetical protein SMU.932 [... 670 0.0
gi|125718888|ref|YP_001036021.1| Conserved uncharacterized ... 436 e-120
gi|125718890|ref|YP_001036023.1| hypothetical protein SSA_2... 403 e-111
gi|116617287|ref|YP_817658.1| Uroporphyrinogen-III decarbox... 248 4e-64
gi|42527859|ref|NP_972957.1| hypothetical protein TDE2358 [... 234 5e-60
gi|116617286|ref|YP_817657.1| Uroporphyrinogen-III decarbox... 233 2e-59
gi|148655024|ref|YP_001275229.1| Uroporphyrinogen decarboxy... 89 5e-16
gi|156740641|ref|YP_001430770.1| Uroporphyrinogen decarboxy... 73 2e-11
gi|73539263|ref|YP_299630.1| Uroporphyrinogen decarboxylase... 65 8e-09
>gi|24379376|ref|NP_721331.1| hypothetical protein SMU.932 [Streptococcus mutans UA159]
gi|24377305|gb|AAN58637.1|AE014934_1 hypothetical protein SMU_932 [Streptococcus mutans UA159]
Length = 335
Score = 670 bits (1728), Expect = 0.0, Method: Composition-based stats.
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MADSKKEWVLKAFKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVD 60
MADSKKEWVLKAFKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVD
Sbjct: 1 MADSKKEWVLKAFKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVD 60
Query: 61 PDFIKLMSDGFFTYPNELIHTNVTSIQELANISSIGENHPWFDQQVQLVKAIKESFTEDI 120
PDFIKLMSDGFFTYPNELIHTNVTSIQELANISSIGENHPWFDQQVQLVKAIKESFTEDI
Sbjct: 61 PDFIKLMSDGFFTYPNELIHTNVTSIQELANISSIGENHPWFDQQVQLVKAIKESFTEDI 120
Query: 121 VAIYNIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKIIAE 180
VAIYNIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKIIAE
Sbjct: 121 VAIYNIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKIIAE 180
Query: 181 AGLEGIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEGASNDIK 240
AGLEGIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEGASNDIK
Sbjct: 181 AGLEGIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEGASNDIK 240
Query: 241 LFKDYPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDDIQTEVKKL 300
LFKDYPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDDIQTEVKKL
Sbjct: 241 LFKDYPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDDIQTEVKKL 300
Query: 301 LQESGTLATVIGADCTIPSDIAAEHIAWVKEAVTL 335
LQESGTLATVIGADCTIPSDIAAEHIAWVKEAVTL
Sbjct: 301 LQESGTLATVIGADCTIPSDIAAEHIAWVKEAVTL 335
>gi|125718888|ref|YP_001036021.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36]
gi|125498805|gb|ABN45471.1| Conserved uncharacterized protein [Streptococcus sanguinis SK36]
Length = 333
Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats.
Identities = 212/332 (63%), Positives = 260/332 (78%), Gaps = 2/332 (0%)
Query: 4 SKKEWVLKAFKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVDPDF 63
SK+E VLKAF+GE VD+VPVGFW+HF +E+E+ G N + KNL GHQ F+ EV PDF
Sbjct: 3 SKRELVLKAFRGEPVDRVPVGFWHHFTSEDEWLAGFGNQAIIDKNLAGHQAFLAEVKPDF 62
Query: 64 IKLMSDGFFTYPNELIHTNVTSIQELANISSIGENHPWFDQQVQLVKAIKESFTEDIVAI 123
IKLMSDG+F YPNE + V SI+ LA+I +G +HPW +QV+LV+ I+ SFTED+VAI
Sbjct: 63 IKLMSDGYFAYPNERL-KKVQSIKVLADIEPLGADHPWISEQVELVQKIRASFTEDLVAI 121
Query: 124 YNIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKIIAEAGL 183
YNIF+PVTY KW L G+VA GD IIA FL EDA K+VL+VIA DIA LT +II EAG
Sbjct: 122 YNIFAPVTYFKW-LVGKVAGGDDIIADFLVEDAVLTKRVLDVIAQDIAALTERIIKEAGA 180
Query: 184 EGIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEGASNDIKLFK 243
+GIYLSVQSIQD+ V++EDY+ +I PS+L ++EAA A G+ +LHICGYEGA ND+ LF
Sbjct: 181 DGIYLSVQSIQDARVSAEDYKAFIAPSELAVLEAANAAGGVNILHICGYEGARNDVHLFT 240
Query: 244 DYPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDDIQTEVKKLLQE 303
DYPAQV NWAVGPEGISLA+GRKLFGG+TVLGGF N KDG+LY GS+ IQ E +L+ E
Sbjct: 241 DYPAQVINWAVGPEGISLAEGRKLFGGRTVLGGFENGKDGLLYTGSQAAIQDETNRLIAE 300
Query: 304 SGTLATVIGADCTIPSDIAAEHIAWVKEAVTL 335
+G A +IGADCTIPSDI AE I WV++A +L
Sbjct: 301 AGKEALIIGADCTIPSDIEAERIQWVRQAASL 332
>gi|125718890|ref|YP_001036023.1| hypothetical protein SSA_2105 [Streptococcus sanguinis SK36]
gi|125498807|gb|ABN45473.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 348
Score = 403 bits (1036), Expect = e-111, Method: Composition-based stats.
Identities = 182/331 (54%), Positives = 248/331 (74%)
Query: 4 SKKEWVLKAFKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVDPDF 63
SKKE VL+AF+GE VD+VPVGFW+HF+++EE GLDNP +F K+++GH +++ PDF
Sbjct: 16 SKKELVLRAFRGEEVDRVPVGFWFHFVSQEEKMLGLDNPVIFNKSVEGHAAYVRAARPDF 75
Query: 64 IKLMSDGFFTYPNELIHTNVTSIQELANISSIGENHPWFDQQVQLVKAIKESFTEDIVAI 123
+K+MSDGFF YP+ L ++ SI++LA I SIGE+HPW +QQ+++VKA+K S+ ED+ +
Sbjct: 76 VKIMSDGFFKYPSALYSDHIESIRDLAAIQSIGEHHPWIEQQIEMVKAVKASYPEDLASF 135
Query: 124 YNIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKIIAEAGL 183
YNIF+PV+YLK + + GD IA FL ED++ VL+VIAGDIA LTR+II EAG+
Sbjct: 136 YNIFAPVSYLKRWFRREGSRGDREIADFLAEDSELTGHVLDVIAGDIAILTRRIIEEAGI 195
Query: 184 EGIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEGASNDIKLFK 243
EGIYLS Q IQD V YR YI PS + ++EAA A G +LHICG+EGASND++LFK
Sbjct: 196 EGIYLSTQQIQDGRVDEASYRRYIEPSTIKVLEAANAAGGQNILHICGFEGASNDLELFK 255
Query: 244 DYPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDDIQTEVKKLLQE 303
DYPAQVFNWA EG+SLA+GRKLFGG+ VLGGF N + +L GS+ +++ E K+LL E
Sbjct: 256 DYPAQVFNWATHHEGVSLAEGRKLFGGQAVLGGFENGRAALLNTGSRAELENETKRLLAE 315
Query: 304 SGTLATVIGADCTIPSDIAAEHIAWVKEAVT 334
+G+ ++GADCT+P D E + W+++A +
Sbjct: 316 TGSQGVILGADCTVPDDFEIERLDWIRQAAS 346
>gi|116617287|ref|YP_817658.1| Uroporphyrinogen-III decarboxylase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096134|gb|ABJ61285.1| Uroporphyrinogen-III decarboxylase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 333
Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats.
Identities = 129/322 (40%), Positives = 194/322 (60%), Gaps = 7/322 (2%)
Query: 16 ERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVDPDFIKLMSDGFFTYP 75
+ +K+PV FW HF A++E L+NP + N+QGH++++ ++ PDF+KLMSDG+F P
Sbjct: 10 DSTEKIPVSFWRHF-ADDETVDALENPTIATINIQGHKEYVDDLRPDFVKLMSDGYFNVP 68
Query: 76 NELIHTNVTSIQELANISSIGENHPWFDQQVQLVKAIKESFTEDIVAIYNIFSPVTYLKW 135
+ + T+ +I L+ I I ++ PW +QV+LV+ K+ + YNIFSPVT LKW
Sbjct: 69 FDNV-TDPKNIDNLSKIQEIQDDDPWLTEQVKLVQEQKKVIGQR-RGFYNIFSPVTILKW 126
Query: 136 QL----SGQVAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKIIAEAGLEGIYLSVQ 191
L S A GD + + + +K +LNV+A +I + ++ + G +G+Y S Q
Sbjct: 127 ALYDAESELPAKGDERLTELFIQYPEEIKHILNVLAKNIIKQVKAVVVDGGADGVYYSTQ 186
Query: 192 SIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEGASNDIKLFKDYPAQVFN 251
+Q S T E + DL++I+A + +++LHICG+ G SN ++ F DY + N
Sbjct: 187 ELQSSKYTKELFDGIQKNVDLSVIDAIKSVSDISILHICGFSGTSNHLEWFIDYDLPIVN 246
Query: 252 WAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDDIQTEVKKLLQESGTLATVI 311
WAV EGISL QG+++F K VLGGF NT D +LY GSKD+I+ V+ LL +I
Sbjct: 247 WAVTVEGISLQQGQQIFKDKVVLGGFGNTTDDVLYNGSKDEIEAAVQGLLSNVDKKRVII 306
Query: 312 GADCTIPSDIAAEHIAWVKEAV 333
GADCT+P DI +H+ W AV
Sbjct: 307 GADCTVPRDIPVDHLKWAIAAV 328
>gi|42527859|ref|NP_972957.1| hypothetical protein TDE2358 [Treponema denticola ATCC 35405]
gi|41818687|gb|AAS12876.1| hypothetical protein TDE_2358 [Treponema denticola ATCC 35405]
Length = 335
Score = 234 bits (598), Expect = 5e-60, Method: Composition-based stats.
Identities = 116/326 (35%), Positives = 191/326 (58%), Gaps = 2/326 (0%)
Query: 5 KKEWVLKAFKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVDPDFI 64
K++ +L AF + V +VPVGFW+HF E +GL + + + + G +K ++ PD +
Sbjct: 4 KRKLILDAFNNKHVRRVPVGFWWHFADEYRQFRGLLDDGIIQATIDGTKKMYDDLKPDMV 63
Query: 65 KLMSDGFFTYPNELIHTNVTSIQELANISSIGENHPWFDQQVQLVKAIKESFTEDIVAIY 124
K+MSDGFF +P+ ++ ++ SI ++ I SIG PW+D+Q+ +V +I + F ++ A Y
Sbjct: 64 KIMSDGFFGHPS-IMKNDINSIDDIKKIKSIGNLSPWYDKQIDMVNSILDYFDGEVAAFY 122
Query: 125 NIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKIIAEAGLE 184
NIF+P+ Y++ D + F + L+ L IA D+ L K+ + L+
Sbjct: 123 NIFAPLNYIRLYTECYKKQPDLFVKLFFENPNAMLEASLE-IAADLLVLADKLKGKTKLD 181
Query: 185 GIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEGASNDIKLFKD 244
GIY SVQS+Q + ++ Y++ SD +++ +LHICGY +ND+ +KD
Sbjct: 182 GIYYSVQSVQSQDADLNFHQKYVSVSDKKVLDKINSLWDNNILHICGYGDYTNDLSFYKD 241
Query: 245 YPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDDIQTEVKKLLQES 304
Y A+V+NWAV E +SLA+G+K FG VLGGF N + ++ G+ +I+ V L++E+
Sbjct: 242 YKAKVYNWAVNTEKVSLAEGKKFFGNACVLGGFDNNRGTLIDVGTDIEIENYVDSLIKEA 301
Query: 305 GTLATVIGADCTIPSDIAAEHIAWVK 330
GT +IGADCTI +I + + V+
Sbjct: 302 GTTGVIIGADCTIAPEIGYKRLKQVR 327
>gi|116617286|ref|YP_817657.1| Uroporphyrinogen-III decarboxylase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|116096133|gb|ABJ61284.1| Uroporphyrinogen-III decarboxylase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 343
Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats.
Identities = 126/323 (39%), Positives = 188/323 (58%), Gaps = 16/323 (4%)
Query: 21 VPVGFWYHFLAEEEFGQGLD---NPKLFKKNLQGHQKFIKEVDPDFIKLMSDGFFTYPNE 77
VP FWYHF A G LD NP++ + N+ G +K ++ PDF+KLMSDG F Y E
Sbjct: 16 VPASFWYHFSAAS--GVELDAFKNPEIIEGNILGTKKLVETTSPDFVKLMSDGLFHY--E 71
Query: 78 LIHTNVTSIQEL-ANISSIGENHPWFDQQVQLVKAIKESFTEDIVAIYNIFSPVTYLKWQ 136
+ + + + AN+S I +NHPW + LV+ K+ E + YN+FSP T LKW
Sbjct: 72 FNYQDADDKRVVYANLSPIADNHPWLIKTADLVRRQKQVIGER-ASFYNVFSPTTLLKWA 130
Query: 137 LSGQ------VAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKIIAEAGLEGIYLSV 190
L + D +A + D++ +++ L VI D+ + + AG +GIY S
Sbjct: 131 LVKNPDGHYDKSKADEKLADIILTDSENVRQALEVITLDVIKQVKAAV-NAGADGIYYST 189
Query: 191 QSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEGASNDIKLFKDYPAQVF 250
Q IQD+ + D+ ++ +D +++AA Q +LHICG GA N I F++YPA +
Sbjct: 190 QVIQDTRLGHADFDEFVAATDKQVLKAANQLSDTNILHICGNGGARNAISWFENYPASIV 249
Query: 251 NWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDDIQTEVKKLLQESGTLATV 310
NW+V E ISL +G+++F GK VLGGF NT +LY+G++ +IQ K+L+QE+G +
Sbjct: 250 NWSVDTEDISLHEGKEIFPGKIVLGGFGNTAKDVLYRGTQSEIQQFAKRLVQEAGADNLI 309
Query: 311 IGADCTIPSDIAAEHIAWVKEAV 333
IGA+CT+P DI +H+ W EAV
Sbjct: 310 IGANCTVPRDIDPQHLQWAIEAV 332
>gi|148655024|ref|YP_001275229.1| Uroporphyrinogen decarboxylase (URO-D) [Roseiflexus sp. RS-1]
gi|148567134|gb|ABQ89279.1| Uroporphyrinogen decarboxylase (URO-D) [Roseiflexus sp. RS-1]
Length = 328
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 78/345 (22%), Positives = 144/345 (41%), Gaps = 35/345 (10%)
Query: 4 SKKEWVLKAFKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVDPDF 63
+++E + A +GE VD+ PV W HF +++ +P+ +++ Q D DF
Sbjct: 2 TRRERLAAALRGEPVDRPPVALWRHFPVDDQ------DPEQLAQSVAAFQA---HYDWDF 52
Query: 64 IKLMSDGFFTYPN---------------ELIHTNVTSIQELANISSIGENHPWFDQQVQL 108
+K F + + + V+ + I + +
Sbjct: 53 VKFTPSSSFCVEDWGCRAVYRGRPEGTSDYVARPVSVPADWRRIEPLDPYAGALGAHLAA 112
Query: 109 VKAIKESFTEDIVAIYNIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNVIAG 168
++ +E D+ + IFSP++ K + GDG+ L+ L L I
Sbjct: 113 IRRARELIDPDVPLLATIFSPISQAKNLI------GDGMEIVHLRRHRSDLFHALEAITE 166
Query: 169 DIATLTRKIIAEAGLEGIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLH 228
+ +A AG +GI+ ++Q ++ +YR+ +P DL I+EA AQ T
Sbjct: 167 TTIRFVQAALA-AGADGIFYAMQRCTADVISEAEYRDVCSPLDLRILEAVHAAQRETTFI 225
Query: 229 ICGYEGASNDIKLFKDYPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKG 288
+ G + + +YPAQ NW G LA+G + F G V+GG ++ +D + +G
Sbjct: 226 LLHLHGLYSYFDIAAEYPAQALNWHDRDTGPDLAEGARRFPG-MVVGG-LSQRD--IVEG 281
Query: 289 SKDDIQTEVKKLLQESGTLATVIGADCTIPSDIAAEHIAWVKEAV 333
+ IQT ++ + G + C +P+ +I ++ AV
Sbjct: 282 TPATIQTLARQAIDAMGGRRVCLSTGCVMPTTAPWGNIRALRAAV 326
>gi|156740641|ref|YP_001430770.1| Uroporphyrinogen decarboxylase (URO-D) [Roseiflexus castenholzii
DSM 13941]
gi|156231969|gb|ABU56752.1| Uroporphyrinogen decarboxylase (URO-D) [Roseiflexus castenholzii
DSM 13941]
Length = 333
Score = 73.2 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 75/354 (21%), Positives = 144/354 (40%), Gaps = 44/354 (12%)
Query: 1 MADSKKEWVLKAFKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVD 60
M+ +++E + A +GE VD+ PV W HF +++ +P+ ++ Q + D
Sbjct: 1 MSMTRRERLAAAIRGEPVDRPPVALWRHFPVDDQ------DPEQLALSVAAFQS---QYD 51
Query: 61 PDFIKLMSDGFFTYPN---------------ELIHTNVTSIQELANISSIGENHPWFDQQ 105
DF+K F N + + V+ + I+ +
Sbjct: 52 WDFVKFTPSSSFCVENWGCRVVYRGHSEGTSDYVARPVSVPADWRRITPLDPRAGALGAH 111
Query: 106 VQLVKAIKESFTEDIVAIYNIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNV 165
+ V+ + D+ + +FSP++ K + G G+ L+ L L
Sbjct: 112 LVAVRRARALIDPDVPLLATVFSPISQAKNLIGG------GMDIVHLRRHRSDLLDALEA 165
Query: 166 IAGDIATLTRKIIAEAGLEGIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQG-- 223
I ++ E G +GI+ ++Q ++ +YR P D+ I+EAA A
Sbjct: 166 ITETTIRFVEAVL-ETGADGIFYAMQRCTADVISEAEYREVCRPLDMRILEAAHAASAAH 224
Query: 224 ----LTVLHICGYEGASNDIKLFKDYPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVN 279
+LH+ G + + +YPAQ NW G LA+G + F G V+GG ++
Sbjct: 225 GKPPFILLHL---HGMHSYFDIAAEYPAQALNWHDRDTGPDLAEGARRFPG-MVVGG-LS 279
Query: 280 TKDGILYKGSKDDIQTEVKKLLQESGTLATVIGADCTIPSDIAAEHIAWVKEAV 333
+D + +GS +Q+ ++ + G + C +P+ +I +++ V
Sbjct: 280 QRD--IVEGSPTAVQSLARQAIAAMGGRRMCLSTGCVMPTTAPWGNIRALRDVV 331
>gi|73539263|ref|YP_299630.1| Uroporphyrinogen decarboxylase (URO-D) [Ralstonia eutropha JMP134]
gi|72122600|gb|AAZ64786.1| Uroporphyrinogen decarboxylase (URO-D) [Ralstonia eutropha JMP134]
Length = 334
Score = 64.7 bits (156), Expect = 8e-09, Method: Composition-based stats.
Identities = 78/340 (22%), Positives = 133/340 (39%), Gaps = 48/340 (14%)
Query: 13 FKGERVDKVPVGFWYHFLAEEEFGQGLDNPKLFKKNLQGHQKFIKEVDPDFIKLMSDGFF 72
+GE D+VPV W HF ++ +D KL L +K+ D +K M G +
Sbjct: 14 LRGEPADRVPVALWRHFPVDD-----MDAGKLTALTLAWQRKW----QFDLLKFMPPGTY 64
Query: 73 TYPNELIHTN---------------VTSIQELANISSIGENHPWFDQQVQLVKAIKESFT 117
+ T V ++ I I + + QQ + S
Sbjct: 65 GVEDWGAKTAYAGAANGARVVTDPVVRRTEDWERIRWIDQRLGAYGQQNIALGQTARSLG 124
Query: 118 EDIVAIYNIFSPVTYLKWQLSGQVAHGDGIIARFLQEDAQTLKKVLNVIAGDIATLTRKI 177
+ + +FSP+T + + L D + L+ I +T
Sbjct: 125 GTVPILQTVFSPLTTAR-----------KLATERLFTDIRCHPAALHAALRIITDVTIDF 173
Query: 178 IAEA---GLEGIYLSVQSIQDSNVTSEDYRNYITPSDLTIIEAAQQAQGLTVLHICGYEG 234
EA G GI+ + Q +T+ +Y + DL I++A + + +LH G
Sbjct: 174 CIEALSVGAHGIFFATQLASHRLLTTAEYEQFGKQYDLEILDAIRGRCRVNMLHAHG--- 230
Query: 235 ASNDIK--LFKDYPAQVFNWAVGPEGISLAQGRKLFGGKTVLGGFVNTKDGILYKGSKDD 292
+DI L DYP ++FNW L++ R+ F G VL G +N +L+ G ++
Sbjct: 231 --DDIMFGLLSDYPVELFNWHDRLTDPDLSRARRHFPG--VLVGGLNEHHTLLH-GGRNA 285
Query: 293 IQTEVKKLLQESGTLATVIGADCTIPSDIAAEHIAWVKEA 332
I EV+ + ++ +IG C +P + + I V +A
Sbjct: 286 IADEVQDAVAQTDGRKLIIGPGCVLPVETSDAAIQAVLDA 325
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,221,377,211
Number of Sequences: 5470121
Number of extensions: 50755563
Number of successful extensions: 131258
Number of sequences better than 1.0e-05: 9
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 131232
Number of HSP's gapped (non-prelim): 10
length of query: 335
length of database: 1,894,087,724
effective HSP length: 133
effective length of query: 202
effective length of database: 1,166,561,631
effective search space: 235645449462
effective search space used: 235645449462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)