BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SSA_1366
(454 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|125718181|ref|YP_001035314.1| Alkaline D-stereospecific ... 920 0.0
gi|125718184|ref|YP_001035317.1| FmtA-like protein, putativ... 808 0.0
gi|125718178|ref|YP_001035311.1| FmtA-like protein, putativ... 543 e-153
gi|125717268|ref|YP_001034401.1| hypothetical protein SSA_0... 520 e-146
gi|125717267|ref|YP_001034400.1| hypothetical protein SSA_0... 480 e-134
gi|125718186|ref|YP_001035319.1| FmtA-like protein, putativ... 417 e-115
gi|125718292|ref|YP_001035425.1| FmtA-like protein, putativ... 354 5e-96
gi|125717577|ref|YP_001034710.1| FmtA-like protein, putativ... 310 9e-83
gi|125718179|ref|YP_001035312.1| hypothetical protein SSA_1... 281 5e-74
gi|125718180|ref|YP_001035313.1| FmtA-like protein, putativ... 233 1e-59
gi|83858968|ref|ZP_00952490.1| FmtA-like protein [Oceanicau... 103 2e-20
gi|123446900|ref|XP_001312196.1| beta-lactamase family prot... 101 1e-19
gi|148557506|ref|YP_001265088.1| beta-lactamase [Sphingomon... 98 1e-18
gi|83858958|ref|ZP_00952480.1| FmtA-like protein [Oceanicau... 96 3e-18
gi|123495373|ref|XP_001326723.1| beta-lactamase family prot... 95 8e-18
gi|123424083|ref|XP_001306507.1| beta-lactamase family prot... 90 3e-16
gi|103486950|ref|YP_616511.1| beta-lactamase [Sphingopyxis ... 85 1e-14
gi|114799769|ref|YP_760316.1| beta-lactamase [Hyphomonas ne... 83 3e-14
gi|123498907|ref|XP_001327505.1| beta-lactamase family prot... 82 6e-14
gi|94970856|ref|YP_592904.1| beta-lactamase [Acidobacteria ... 80 2e-13
gi|118478545|ref|YP_895696.1| possible penicillin-binding p... 78 1e-12
gi|88859794|ref|ZP_01134433.1| hypothetical beta-lactamase ... 72 1e-10
gi|38141539|emb|CAE53429.1| putative alkaline D-stereospeci... 71 1e-10
gi|124485162|ref|YP_001029778.1| hypothetical protein Mlab_... 71 2e-10
gi|56460918|ref|YP_156199.1| Beta-lactamase class C family ... 70 3e-10
gi|21240908|ref|NP_640490.1| beta-lactamase [Xanthomonas ax... 70 4e-10
gi|20090206|ref|NP_616281.1| FmtA-like protein [Methanosarc... 70 4e-10
gi|148271885|ref|YP_001221446.1| putative beta lactamase/pe... 69 9e-10
gi|123418309|ref|XP_001305294.1| beta-lactamase family prot... 68 1e-09
gi|156742180|ref|YP_001432309.1| Serine-type D-Ala-D-Ala ca... 68 1e-09
gi|38141541|emb|CAE53430.1| D-stereospecific endopeptidase ... 68 1e-09
gi|30262645|ref|NP_845022.1| alkaline D-peptidase [Bacillus... 68 1e-09
gi|49477818|ref|YP_036766.1| alkaline D-peptidase (D-stereo... 68 1e-09
gi|52142831|ref|YP_083998.1| D-alanyl-D-alanine carboxypept... 67 2e-09
gi|85709021|ref|ZP_01040087.1| beta-lactamase family protei... 67 2e-09
gi|83857770|ref|ZP_00951298.1| penicillin-binding protein, ... 67 3e-09
gi|89209147|ref|ZP_01187603.1| Beta-lactamase [Bacillus wei... 67 4e-09
gi|124009304|ref|ZP_01693983.1| beta-lactamase [Microscilla... 66 4e-09
gi|67077982|ref|YP_245602.1| D-stereospecific peptide hydro... 66 6e-09
gi|116621660|ref|YP_823816.1| beta-lactamase [Solibacter us... 65 9e-09
gi|38141543|emb|CAE53431.1| D-stereospecific endopeptidase ... 65 1e-08
gi|149585577|ref|XP_001518282.1| PREDICTED: similar to Seri... 64 1e-08
gi|126652130|ref|ZP_01724312.1| hypothetical protein BB1490... 64 2e-08
gi|91218158|ref|ZP_01255107.1| beta-lactamase [Psychroflexu... 64 2e-08
gi|126277299|ref|XP_001374581.1| PREDICTED: similar to Seri... 64 2e-08
gi|15893474|ref|NP_346823.1| Similar to beta-lactamase [Clo... 64 2e-08
gi|1741967|dbj|BAA13079.1| Alkaline D-peptidase [Bacillus c... 64 2e-08
gi|153952982|ref|YP_001393747.1| Predicted peptidoglycan bi... 64 2e-08
gi|55378693|ref|YP_136543.1| hypothetical protein rrnAC1970... 64 3e-08
gi|38141536|emb|CAE53428.1| D-stereospecific endopeptidase ... 64 3e-08
gi|49487224|ref|YP_044445.1| hypothetical protein SAS2333 [... 64 3e-08
gi|16801096|ref|NP_471364.1| hypothetical protein lin2030 [... 64 3e-08
gi|87311341|ref|ZP_01093462.1| Serine-type D-Ala-D-Ala carb... 64 3e-08
gi|42781358|ref|NP_978605.1| penicillin-binding protein, pu... 63 3e-08
gi|21284094|ref|NP_647182.1| hypothetical protein MW2365 [S... 63 5e-08
gi|47565623|ref|ZP_00236663.1| beta-lactamase [Bacillus cer... 62 7e-08
gi|88712326|ref|ZP_01106413.1| beta-lactamase [Flavobacteri... 62 9e-08
gi|14520356|ref|NP_125831.1| hypothetical beta-lactamase pr... 62 9e-08
gi|23127421|ref|ZP_00109292.1| COG1680: Beta-lactamase clas... 62 9e-08
gi|148656757|ref|YP_001276962.1| beta-lactamase [Roseiflexu... 62 1e-07
gi|75764249|ref|ZP_00743801.1| D-alanyl-D-alanine carboxype... 61 1e-07
gi|91791835|ref|YP_561486.1| beta-lactamase [Shewanella den... 61 1e-07
gi|13507666|ref|NP_109642.1| lactamase, beta [Mus musculus]... 61 1e-07
gi|34864295|ref|XP_217181.2| PREDICTED: similar to lactamas... 61 1e-07
gi|91215824|ref|ZP_01252793.1| penicillin-binding protein 4... 61 1e-07
gi|28374178|gb|AAH46293.1| Lactb protein [Mus musculus] 61 2e-07
gi|71895675|ref|NP_001025717.1| lactamase, beta [Gallus gal... 61 2e-07
gi|74000843|ref|XP_544713.2| PREDICTED: similar to lactamas... 61 2e-07
gi|118572765|sp|P83095|LACTB_BOVIN Serine beta-lactamase-li... 61 2e-07
gi|149773574|ref|NP_001092603.1| hypothetical protein LOC61... 61 2e-07
gi|153890346|ref|ZP_02011431.1| beta-lactamase [Opitutaceae... 61 2e-07
gi|52142382|ref|YP_084447.1| D-alanyl-D-alanine carboxypept... 60 2e-07
gi|119774488|ref|YP_927228.1| beta-lactamase class C-like p... 60 2e-07
gi|89206593|ref|ZP_01185149.1| Beta-lactamase [Bacillus wei... 60 2e-07
gi|149176975|ref|ZP_01855584.1| Uncharacterised conserved p... 60 2e-07
gi|30021593|ref|NP_833224.1| Penicillin-binding protein [Ba... 60 2e-07
gi|109081423|ref|XP_001104610.1| PREDICTED: similar to lact... 60 3e-07
gi|49477584|ref|YP_036382.1| D-alanyl-D-alanine carboxypept... 60 3e-07
gi|119598044|gb|EAW77638.1| lactamase, beta, isoform CRA_b ... 60 3e-07
gi|52143219|ref|YP_083610.1| penicillin-binding protein [Ba... 60 3e-07
gi|26051231|ref|NP_116246.2| lactamase, beta isoform a [Hom... 60 3e-07
gi|75764506|ref|ZP_00743983.1| Beta-lactamase family protei... 60 4e-07
gi|23100815|ref|NP_694282.1| hypothetical protein OB3360 [O... 60 4e-07
gi|37524188|ref|NP_927532.1| hypothetical protein plu0166 [... 60 4e-07
gi|118477698|ref|YP_894849.1| D-alanyl-D-alanine carboxypep... 60 4e-07
gi|88806500|ref|ZP_01122017.1| hypothetical protein RB2501_... 60 4e-07
gi|15925431|ref|NP_372965.1| fmtA-like protein [Staphylococ... 59 5e-07
gi|82752037|ref|YP_417778.1| probable drug resistance-invol... 59 5e-07
gi|94969642|ref|YP_591690.1| Uncharacterised conserved prot... 59 5e-07
gi|56963167|ref|YP_174895.1| penicillin-binding protein 4 [... 59 5e-07
gi|88713412|ref|ZP_01107495.1| beta-lactamase (penicillin-b... 59 5e-07
gi|124005702|ref|ZP_01690541.1| beta-lactamase, putative [M... 59 5e-07
gi|124003888|ref|ZP_01688736.1| beta-lactamase [Microscilla... 59 5e-07
gi|49484658|ref|YP_041882.1| hypothetical protein SAR2531 [... 59 5e-07
gi|109157484|pdb|2DNS|A Chain A, The Crystal Structure Of D... 59 6e-07
gi|42781328|ref|NP_978575.1| hypothetical protein BCE_2264 ... 59 6e-07
gi|108764044|ref|YP_635284.1| beta lactamase family protein... 59 6e-07
gi|119895162|ref|XP_587376.3| PREDICTED: similar to serine ... 59 6e-07
gi|52143186|ref|YP_083643.1| D-alanyl-D-alanine carboxypept... 59 6e-07
gi|4127525|emb|CAA09676.1| D-stereospecific peptide hydrola... 59 7e-07
gi|118471628|ref|YP_885965.1| beta-lactamase [Mycobacterium... 59 7e-07
gi|124004316|ref|ZP_01689162.1| beta-lactamase, putative [M... 59 7e-07
gi|94968028|ref|YP_590076.1| beta-lactamase [Acidobacteria ... 59 7e-07
gi|116621608|ref|YP_823764.1| beta-lactamase [Solibacter us... 59 8e-07
gi|88196374|ref|YP_501197.1| hypothetical protein SAOUHSC_0... 59 8e-07
gi|87160635|ref|YP_495021.1| beta-lactamase [Staphylococcus... 59 8e-07
gi|57652256|ref|YP_187245.1| fmtA-like protein [Staphylococ... 59 9e-07
gi|88712334|ref|ZP_01106421.1| beta-lactamase, putative [Fl... 59 9e-07
gi|30262987|ref|NP_845364.1| alkaline D-peptidase [Bacillus... 59 1e-06
gi|118478349|ref|YP_895500.1| D-alanyl-D-alanine carboxypep... 58 1e-06
gi|49481674|ref|YP_037093.1| D-alanyl-D-alanine carboxypept... 58 1e-06
gi|52841352|ref|YP_095151.1| serine-type D-Ala-D-Ala carbox... 58 1e-06
gi|94967643|ref|YP_589691.1| beta-lactamase [Acidobacteria ... 58 1e-06
gi|13475563|ref|NP_107127.1| hypothetical protein mll6665 [... 58 1e-06
gi|119880485|ref|ZP_01646820.1| Serine-type D-Ala-D-Ala car... 58 1e-06
gi|124006018|ref|ZP_01690855.1| beta-lactamase [Microscilla... 58 1e-06
gi|89209440|ref|ZP_01187857.1| Beta-lactamase [Bacillus wei... 58 1e-06
gi|47570164|ref|ZP_00240820.1| penicillin-binding protein [... 58 2e-06
gi|118478619|ref|YP_895770.1| alkaline D-peptidase and alka... 58 2e-06
gi|37524187|ref|NP_927531.1| hypothetical protein plu0165 [... 58 2e-06
gi|16266764|dbj|BAB69970.1| alkaline D-peptidase homolog [B... 57 2e-06
gi|75761366|ref|ZP_00741339.1| Beta-lactamase family protei... 57 2e-06
gi|119875489|ref|ZP_01642555.1| beta-lactamase [Stenotropho... 57 2e-06
gi|70725621|ref|YP_252535.1| hypothetical protein SH0620 [S... 57 2e-06
gi|47568609|ref|ZP_00239307.1| beta-lactamase [Bacillus cer... 57 2e-06
gi|152976453|ref|YP_001375970.1| beta-lactamase [Bacillus c... 57 2e-06
gi|30021230|ref|NP_832861.1| D-alanyl-D-alanine carboxypept... 57 2e-06
gi|120404007|ref|YP_953836.1| Serine-type D-Ala-D-Ala carbo... 57 2e-06
gi|49479259|ref|YP_037586.1| possible beta-lactamase [Bacil... 57 3e-06
gi|111023881|ref|YP_706853.1| serine-type D-Ala-D-Ala carbo... 57 3e-06
gi|94971069|ref|YP_593117.1| beta-lactamase [Acidobacteria ... 57 3e-06
gi|88806039|ref|ZP_01121557.1| beta-lactamase precursor [Ro... 57 3e-06
gi|89206521|ref|ZP_01185078.1| Serine-type D-Ala-D-Ala carb... 57 4e-06
gi|30263450|ref|NP_845827.1| penicillin-binding protein, pu... 57 4e-06
gi|52142035|ref|YP_084794.1| possible beta-lactamase [Bacil... 57 4e-06
gi|118478754|ref|YP_895905.1| possible beta-lactamase [Baci... 57 4e-06
gi|148358698|ref|YP_001249905.1| serine-type D-Ala-D-Ala ca... 57 4e-06
gi|47093833|ref|ZP_00231578.1| peptidase, putative [Listeri... 56 4e-06
gi|30021128|ref|NP_832759.1| D-alanyl-D-alanine carboxypept... 56 4e-06
gi|148554735|ref|YP_001262317.1| beta-lactamase [Sphingomon... 56 4e-06
gi|27468925|ref|NP_765562.1| beta-lactamase [Staphylococcus... 56 4e-06
gi|52142220|ref|YP_084609.1| alkaline D-peptidase and alkal... 56 5e-06
gi|57865382|ref|YP_189575.1| fmtA-like protein [Staphylococ... 56 5e-06
gi|68231372|ref|ZP_00570541.1| Beta-lactamase [Frankia sp. ... 56 5e-06
gi|124006877|ref|ZP_01691707.1| beta-lactamase [Microscilla... 56 6e-06
gi|111017221|ref|YP_700193.1| probable serine-type D-Ala-D-... 56 6e-06
gi|54297074|ref|YP_123443.1| hypothetical protein lpp1119 [... 56 6e-06
gi|88806041|ref|ZP_01121559.1| Beta-lactamase [Robiginitale... 55 7e-06
gi|150018518|ref|YP_001310772.1| beta-lactamase [Clostridiu... 55 7e-06
gi|124008674|ref|ZP_01693364.1| beta-lactamase [Microscilla... 55 9e-06
gi|91217076|ref|ZP_01254038.1| beta-lactamase family protei... 55 9e-06
gi|116873351|ref|YP_850132.1| hypothetical protein lwe1935 ... 55 9e-06
gi|16803955|ref|NP_465440.1| hypothetical protein lmo1916 [... 55 9e-06
gi|52142488|ref|YP_084342.1| D-alanyl-D-alanine carboxypept... 55 9e-06
gi|89095929|ref|ZP_01168823.1| beta-lactamase [Bacillus sp.... 55 1e-05
>gi|125718181|ref|YP_001035314.1| Alkaline D-stereospecific endopeptidase precursor, putative
[Streptococcus sanguinis SK36]
gi|125498098|gb|ABN44764.1| Alkaline D-stereospecific endopeptidase precursor, putative
[Streptococcus sanguinis SK36]
Length = 455
Score = 920 bits (2378), Expect = 0.0, Method: Composition-based stats.
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 1 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI
Sbjct: 2 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 61
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM
Sbjct: 62 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 121
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY 180
YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY
Sbjct: 122 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY 181
Query: 181 GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATK 240
GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATK
Sbjct: 182 GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATK 241
Query: 241 KQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRSQGADRLEFG 300
KQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRSQGADRLEFG
Sbjct: 242 KQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRSQGADRLEFG 301
Query: 301 VLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRSWKVW 360
VLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRSWKVW
Sbjct: 302 VLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRSWKVW 361
Query: 361 NCLTSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFSKTRKD 420
NCLTSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFSKTRKD
Sbjct: 362 NCLTSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFSKTRKD 421
Query: 421 LGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM 454
LGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM
Sbjct: 422 LGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM 455
>gi|125718184|ref|YP_001035317.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
gi|125498101|gb|ABN44767.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
Length = 595
Score = 808 bits (2086), Expect = 0.0, Method: Composition-based stats.
Identities = 390/456 (85%), Positives = 424/456 (92%), Gaps = 2/456 (0%)
Query: 1 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSN+STAL SYIVERI
Sbjct: 140 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNYSTALASYIVERI 199
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
SGQKYADYVHEHVFEPL+MDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM
Sbjct: 200 SGQKYADYVHEHVFEPLDMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 259
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY 180
YPVGGAVGTLGDLQKFAQALLERKTLFH PETWTELYSTTSTHPGTDIVRNAHGFWASHY
Sbjct: 260 YPVGGAVGTLGDLQKFAQALLERKTLFHHPETWTELYSTTSTHPGTDIVRNAHGFWASHY 319
Query: 181 GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATK 240
VTLLGHSGN++GFSS LYLDL+NGIGQVILTNQ YE +YN+QMPELIFGKMQTVSE TK
Sbjct: 320 SVTLLGHSGNSNGFSSNLYLDLENGIGQVILTNQQYELIYNMQMPELIFGKMQTVSEETK 379
Query: 241 KQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRSQGADRLEFG 300
KQF GSY YL SYN GPLS +LM+PG I KI K++DQP LL+TFWTID+SQGADR+E G
Sbjct: 380 KQFSPGSYRYLGSYNNGPLSILLMMPGTIMKIGKLTDQPGLLTTFWTIDQSQGADRIEVG 439
Query: 301 VLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRSWKVW 360
VL+AE++SD+ LF+HYLV+ LGAL LVFALGNVLIS LIGGFRLILRKA+SS PRSWK+W
Sbjct: 440 VLDAEKLSDTELFQHYLVLILGALGLVFALGNVLISSLIGGFRLILRKARSSAPRSWKIW 499
Query: 361 NCLTSLGMILFAGNLILLLLAAMN--QDYSIVQSWRYILFAGLGLFLAGCAVYPLFSKTR 418
N LTS+G+ILF GNLIL LL+AMN Q+YS++QSWR++ FAGLGLFLAGCAVYPLFSK R
Sbjct: 500 NYLTSIGIILFGGNLILFLLSAMNPFQNYSMIQSWRFMAFAGLGLFLAGCAVYPLFSKAR 559
Query: 419 KDLGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM 454
+ LGKGRL+LT+LTSLSALAIV NILYWSLYQ+WVM
Sbjct: 560 RGLGKGRLYLTILTSLSALAIVVNILYWSLYQWWVM 595
>gi|125718178|ref|YP_001035311.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
gi|125498095|gb|ABN44761.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
Length = 592
Score = 543 bits (1399), Expect = e-153, Method: Composition-based stats.
Identities = 286/455 (62%), Positives = 350/455 (76%), Gaps = 3/455 (0%)
Query: 1 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
LDLMNHQ+GFDE PLY +G KS LE+ YQP QSFEPGTTT+YSN+ST L +YIVERI
Sbjct: 140 LDLMNHQSGFDEAPLYIQGGKS-LEDLLLQYQPAQSFEPGTTTAYSNYSTGLAAYIVERI 198
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
SGQ + DY HEH+F+PL+M+RTAI DLSDNAYVQ KRKE KGY G LLGD +++ +
Sbjct: 199 SGQSFVDYTHEHIFQPLDMERTAIAQDLSDNAYVQAKRKEVKGYATDGSLLGDALYEVGL 258
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY 180
YPVG A GTL D QKFAQALL RKTLF R ETWT LYSTT+T+P TDIVRNAHGFWAS +
Sbjct: 259 YPVGRATGTLSDFQKFAQALLSRKTLFARSETWTTLYSTTATYPDTDIVRNAHGFWASKF 318
Query: 181 GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATK 240
GVT+LGH GN +GFSSYL LDLK+GIGQVI+TNQ E++YN MPELIFGK T S T+
Sbjct: 319 GVTVLGHGGNTNGFSSYLLLDLKDGIGQVIMTNQGVEEIYNDGMPELIFGKRSTASAETQ 378
Query: 241 KQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRS-QGADRLEF 299
K+F+ G Y LR++N+GPLS + PG + + K S + + FWTI +S G R+
Sbjct: 379 KKFEPGYYQILRNFNQGPLSLYQLFPGNLLHMKKPSSE-RMDHLFWTIYKSGNGKTRIAT 437
Query: 300 GVLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRSWKV 359
V + E++ D ++ + +V L AL++V+ALGN+L+ ++ +RL+ KAKS R+WK
Sbjct: 438 PVSDFEKVPDWEIWTKFGLVALAALSVVYALGNLLVRLVLVLYRLVFGKAKSKQNRAWKW 497
Query: 360 WNCLTSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFSKTRK 419
W+ LT+ G++ AGNL+LLLL++ D SI+ WRYILFAGLGLFLAGCAV+PLFSK RK
Sbjct: 498 WHILTAAGVVAVAGNLLLLLLSSSATDLSIIAQWRYILFAGLGLFLAGCAVFPLFSKARK 557
Query: 420 DLGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM 454
DLGKGRLFLTVLTSLSALAIVANILYWSLYQ+WVM
Sbjct: 558 DLGKGRLFLTVLTSLSALAIVANILYWSLYQWWVM 592
>gi|125717268|ref|YP_001034401.1| hypothetical protein SSA_0400 [Streptococcus sanguinis SK36]
gi|125497185|gb|ABN43851.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 593
Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats.
Identities = 256/453 (56%), Positives = 332/453 (73%), Gaps = 1/453 (0%)
Query: 1 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
LDLMNHQAGFDE Y + DKS +EE ++ QPIQSFEPGT T+YSN+ L + IVERI
Sbjct: 141 LDLMNHQAGFDETTFYMRSDKS-IEEILKEQQPIQSFEPGTVTAYSNYGAGLAALIVERI 199
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
SGQ +ADY HEH+F+PL MD+TAILPDLSDN+YVQ+KR+E KGYD +G LL F +
Sbjct: 200 SGQTFADYAHEHIFQPLGMDKTAILPDLSDNSYVQKKRQETKGYDTKGNLLSKDHFITSI 259
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY 180
YP+G A GTL D++KFAQALL RKTLF RPETW LY+ +S +P TDI+RNAHGFWA+ Y
Sbjct: 260 YPIGAATGTLKDIEKFAQALLARKTLFERPETWNTLYTASSNYPNTDIIRNAHGFWANEY 319
Query: 181 GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATK 240
G T+LGH GN G +S + LDL++GIG V++TNQ EQ YN QMPEL+FG +T S+ T+
Sbjct: 320 GTTVLGHGGNTAGATSRIMLDLEHGIGYVVMTNQGTEQNYNFQMPELVFGPRKTASKETQ 379
Query: 241 KQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRSQGADRLEFG 300
+QF+ G Y LR++N+GPL+ MIP + + + SD L + FWTI +SQG R+
Sbjct: 380 EQFRPGYYRTLRNFNQGPLAIFKMIPASADYLQEPSDDQRLPNNFWTIYQSQGKTRIAVA 439
Query: 301 VLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRSWKVW 360
V + E++SD F+ Y+V+ L L +++ALG +LIS L+G +RLI RK K R+WKVW
Sbjct: 440 VADYEKVSDFDFFKDYVVLGLAGLGIIYALGLLLISPLLGVYRLIFRKKKDQPDRTWKVW 499
Query: 361 NCLTSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFSKTRKD 420
N LT++G++ NL LL ++A + D+S + WRY+LFA LGL L A+ PLF K+R+
Sbjct: 500 NLLTAVGILAVPINLFLLFMSATSGDFSEIAQWRYMLFAALGLLLTVSALLPLFRKSREK 559
Query: 421 LGKGRLFLTVLTSLSALAIVANILYWSLYQFWV 453
L KGRLFLT +TSLSALA+ ANILYWSLYQ+WV
Sbjct: 560 LSKGRLFLTAVTSLSALAVAANILYWSLYQWWV 592
>gi|125717267|ref|YP_001034400.1| hypothetical protein SSA_0398 [Streptococcus sanguinis SK36]
gi|125497184|gb|ABN43850.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 592
Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats.
Identities = 249/454 (54%), Positives = 326/454 (71%), Gaps = 1/454 (0%)
Query: 1 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
LDLMNHQ GFDE Y KGDK ++EE R QP+QSFEPGT TSYSN+ L S IVERI
Sbjct: 140 LDLMNHQTGFDESLSYTKGDK-NIEENLRMLQPVQSFEPGTVTSYSNYGAGLASLIVERI 198
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
SGQ +ADY HEH+F+PL MD+TA+LPDLSDN YVQ+KR+E K YD +G LG ++ +
Sbjct: 199 SGQTFADYTHEHIFQPLGMDKTALLPDLSDNPYVQKKRQESKAYDTKGNSLGTAFYEYGL 258
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY 180
Y +G A GTL DLQKFAQALL RK LF RPETW LY+ TST+PGTDI RNAHGFW + Y
Sbjct: 259 YSIGQAAGTLEDLQKFAQALLGRKILFDRPETWNTLYTPTSTYPGTDIARNAHGFWINEY 318
Query: 181 GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATK 240
GV+++GH GN DGFSS L LDL++GIG +++TNQ E+ YN QMPEL+FGK +T E T+
Sbjct: 319 GVSIIGHGGNTDGFSSRLMLDLESGIGYIVMTNQSMEENYNYQMPELVFGKRKTADEETQ 378
Query: 241 KQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRSQGADRLEFG 300
KQF G Y R++ GPLSF+ ++ +I+KI+ + L + FWTI S+G +
Sbjct: 379 KQFTPGYYRSPRTFLHGPLSFLRLMMPSIEKIDNPAQNRILSTNFWTIYESKGKITIPVA 438
Query: 301 VLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRSWKVW 360
V++ E+IS ++ Y+++ LG L +V++ G ++ + L+G +RLI RK R+WKVW
Sbjct: 439 VVDYEKISAFDFYKDYIILGLGILGIVYSFGTIITNLLLGVYRLISRKTVEPTDRTWKVW 498
Query: 361 NCLTSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFSKTRKD 420
N LTSLG++ NL+++++ M+ D + WRY+LFA LGL L A+ PLF K+R+
Sbjct: 499 NLLTSLGILAVPLNLLMIMIPLMSDDLDSLAHWRYMLFAALGLLLTAAALLPLFRKSREK 558
Query: 421 LGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM 454
KGRLFLT +TSLSALA+VANILYWSLYQ+WV+
Sbjct: 559 FSKGRLFLTAMTSLSALAVVANILYWSLYQWWVL 592
>gi|125718186|ref|YP_001035319.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
gi|125498103|gb|ABN44769.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
Length = 593
Score = 417 bits (1071), Expect = e-115, Method: Composition-based stats.
Identities = 222/458 (48%), Positives = 287/458 (62%), Gaps = 10/458 (2%)
Query: 2 DLMNHQAGFDEMPLYKKGDKS-DLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
DLMNHQAGF E K DK +EE QP QS+EPGT T+YSNFS +L +YIVERI
Sbjct: 141 DLMNHQAGFGESTHAYKEDKGLSIEEILAVNQPEQSYEPGTMTAYSNFSASLAAYIVERI 200
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
SGQ ++ YVHEH+F+PL M TA+ D +N + +KR E Y G +G + F L +
Sbjct: 201 SGQDFSAYVHEHIFQPLGMKDTALSADFKENPKIYQKRMEQISYRADGTSMGTSYFHLGL 260
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY 180
YP G AV TL D QKFAQALL+++ LF ETWT LY+ TS +PGT++ N HGFW Y
Sbjct: 261 YPAGNAVSTLADFQKFAQALLKKEKLFKHAETWTTLYTATSNYPGTNMPLNMHGFWTREY 320
Query: 181 GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATK 240
G TL+GH GN+ G+SSY+ LDLKNGIG I+TNQ +E VYN +MP L+FG + AT
Sbjct: 321 GTTLVGHGGNSTGYSSYILLDLKNGIGMTIMTNQDHELVYNYEMPALVFGPKKKTDSATF 380
Query: 241 KQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRSQGADRLEFG 300
+F+SG+Y R + GP+S + Q + K D P L F + S ++
Sbjct: 381 DKFQSGNYRSARYFASGPMSISRTLL-YTQFVEKSKDNPLLTQNFSVVSGSGDETKVTAS 439
Query: 301 VLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGG----FRLILRKAKSSVPRS 356
+ R+ DS F + ++ A+ LVF+ +I FL G FRL+ +K +S P+S
Sbjct: 440 YGDNFRVKDSEFFTDWALLISAAVGLVFS----IILFLARGGLDLFRLVFKKGQSKTPKS 495
Query: 357 WKVWNCLTSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFSK 416
++W LTSL + A N +LL D + + SWRYI+FAGLGL LA CAV+PL +K
Sbjct: 496 LRIWTYLTSLAGVGVAINFLLLFNTFATSDLTFLASWRYIVFAGLGLILASCAVFPLLTK 555
Query: 417 TRKDLGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM 454
RK L K RLFLTVLTSLSALAIV NILYWSLYQ+W +
Sbjct: 556 ARKGLSKSRLFLTVLTSLSALAIVVNILYWSLYQWWAL 593
>gi|125718292|ref|YP_001035425.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
gi|125498209|gb|ABN44875.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
Length = 598
Score = 354 bits (909), Expect = 5e-96, Method: Composition-based stats.
Identities = 206/459 (44%), Positives = 286/459 (62%), Gaps = 8/459 (1%)
Query: 1 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
LDLMNHQAGFDE PL G LEE + QP Q++EPGT TSYSN+STAL Y+VERI
Sbjct: 143 LDLMNHQAGFDETPL-NTGTGKSLEELLKS-QPAQTYEPGTVTSYSNYSTALAGYVVERI 200
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
SGQ +ADYVHEH+F+PL M+ TA+LPDLSDN YV++KR+ +K YD G L D +
Sbjct: 201 SGQDFADYVHEHIFQPLGMNHTALLPDLSDNTYVRDKRQGEKTYDTNGSLYLDKLLPADI 260
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY 180
YP G A GT D ++FAQALL ++ LF RPETW ELY TTST + +NAHGFW + Y
Sbjct: 261 YPAGQATGTFADFKRFAQALLRKEKLFKRPETWNELYQTTSTFSDKAVAKNAHGFWVTEY 320
Query: 181 GV-TLLGHSGNA-DGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEA 238
+ ++LGH G++ GFS+ + LD K+GIG V + NQ E ++ +P+L+FGK +
Sbjct: 321 EIGSILGHGGHSFAGFSTMISLDFKSGIGMVTMVNQREEATFSFGLPDLVFGKKKQAPNQ 380
Query: 239 TKKQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKV-SDQPDLLSTFWTIDRSQGADRL 297
++K F+ G Y RS +GP S + P + V D LLS +W QG +
Sbjct: 381 SQKDFQEGMYRTSRSIQQGPTSISRLTPVYTFYVKDVIKDGHLLLSNYWLWQHRQGRTEV 440
Query: 298 EFGVLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLIL-RKAKSSVPRS 356
E + E++S + + Y V L LA+V+A+ +L++ L +RL+ +++K + PRS
Sbjct: 441 ETTYNHLEKLSLWEVVKDYGSVALLGLAVVYAVLVLLLAALGKVYRLLFGKESKRATPRS 500
Query: 357 WKVWNCLTSLGMILFA-GNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFS 415
WK+W+ T G+IL + NL L++ A++ Y W+ ILFA L L A P+F
Sbjct: 501 WKIWHYGTC-GLILVSLVNLAGLVIVAVSGKYMPDYRWQAILFAFLALIFLVNAALPIFL 559
Query: 416 KTRKDLGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM 454
++ + KGR LT LTS ++L +V NILYWSLYQ+W +
Sbjct: 560 RSTFQVSKGRKILTYLTSSASLIVVLNILYWSLYQWWAL 598
>gi|125717577|ref|YP_001034710.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
gi|125497494|gb|ABN44160.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
Length = 599
Score = 310 bits (795), Expect = 9e-83, Method: Composition-based stats.
Identities = 195/468 (41%), Positives = 259/468 (55%), Gaps = 25/468 (5%)
Query: 1 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
LDLMNHQAGF++ PLY DK DL + P Q +EPGT TSYSN+ TAL YIVERI
Sbjct: 143 LDLMNHQAGFEDYPLYIGSDK-DLGALMKK-TPSQIYEPGTVTSYSNYGTALAGYIVERI 200
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLL-GDTPFKLW 119
SGQ +ADYVHEH+F+PL M TA+ PDLSDN +VQ++R+++K YD G LL GD PF L
Sbjct: 201 SGQSFADYVHEHIFQPLGMKHTALKPDLSDNVFVQKQREKEKTYDTNGDLLKGDQPFVLG 260
Query: 120 MYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASH 179
YP G A GT D++KFAQALL+++ LF R ETW YS + T+PGTDI NAHG W +
Sbjct: 261 EYPAGRATGTFADIKKFAQALLQKEKLFKRAETWENFYSASHTYPGTDIPVNAHGLWVTE 320
Query: 180 YGVT-LLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEA 238
+ T GH GN+ GF++ L LDLK+GIG V+ NQ E + + MP+LI+GK + S+A
Sbjct: 321 FENTRTFGHGGNSPGFTTSLLLDLKSGIGSVVTVNQRNEFHFALSMPDLIYGKKKEASKA 380
Query: 239 TKKQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQP--DLLSTFWTIDRSQGADR 296
+K F++G Y R Y+ GPLS + N + D FWT G
Sbjct: 381 AQKDFQAGFYREARIYSGGPLSIFRVFKSTSYLTNPSENAAIKDYFG-FWTAGERGGHYI 439
Query: 297 LEFGVLNAERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRS 356
L + + ++ + + Y + L LA ++ L L +RL+ RK K +
Sbjct: 440 LNLPISDRTKLPLLDVIKDYGSLLLAGLAALYVALCYLSGILAKLYRLLTRKNKGTGSVV 499
Query: 357 WKVWNCLTSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGL-GLFLAG-------- 407
W W+ LT G LIL + +SI+ + AGL G F
Sbjct: 500 WSSWHYLT--------GFLILWAFRNLFSFFSIILAKNSFDLAGLTGHFQLFALLAVVLL 551
Query: 408 -CAVYPLFSKTRKDLGKGRLFLTVLTSLSALAIVANILYWSLYQFWVM 454
A P + L +G +LT+ TS A I NI YWSLYQ+W +
Sbjct: 552 ISAFLPYLPFFKARLKQGNKYLTLATSSVAFIIAFNIFYWSLYQWWTL 599
>gi|125718179|ref|YP_001035312.1| hypothetical protein SSA_1364 [Streptococcus sanguinis SK36]
gi|125498096|gb|ABN44762.1| Hypothetical protein SSA_1364 [Streptococcus sanguinis SK36]
Length = 271
Score = 281 bits (720), Expect = 5e-74, Method: Composition-based stats.
Identities = 146/271 (53%), Positives = 194/271 (71%)
Query: 184 LLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPELIFGKMQTVSEATKKQF 243
+LGH GN GFSS + LDL++GIG +++TNQ EQ YN QMPEL+FG +T S+ T++QF
Sbjct: 1 MLGHGGNTLGFSSRMILDLEHGIGYIVMTNQSTEQNYNFQMPELVFGPRKTASKETQEQF 60
Query: 244 KSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLSTFWTIDRSQGADRLEFGVLN 303
G Y LR++N+GPL+ M+ G K S LL+ FW I +S+G + GV +
Sbjct: 61 SPGYYRTLRNFNQGPLAIFKMVSGFANNWQKPSGDQRLLNNFWAIYQSKGKPHIALGVAD 120
Query: 304 AERISDSVLFRHYLVVFLGALALVFALGNVLISFLIGGFRLILRKAKSSVPRSWKVWNCL 363
E+ISD ++ ++++ G L +++ALG +LIS ++G +RLI RK + WK WN L
Sbjct: 121 YEKISDFDFYKDFIILGSGGLGIIYALGLLLISLILGAYRLIFRKKQEQPDHVWKAWNIL 180
Query: 364 TSLGMILFAGNLILLLLAAMNQDYSIVQSWRYILFAGLGLFLAGCAVYPLFSKTRKDLGK 423
T++G+++F NL L+ +A + D+S + WRYILFAGLGLFLAGCAVYPLF KTRK LGK
Sbjct: 181 TAVGVLVFPINLFLMFVAQASGDFSEIAQWRYILFAGLGLFLAGCAVYPLFRKTRKGLGK 240
Query: 424 GRLFLTVLTSLSALAIVANILYWSLYQFWVM 454
GRLFLTVLTSLSALAIVANILYWSLYQ+WVM
Sbjct: 241 GRLFLTVLTSLSALAIVANILYWSLYQWWVM 271
>gi|125718180|ref|YP_001035313.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
gi|125498097|gb|ABN44763.1| FmtA-like protein, putative [Streptococcus sanguinis SK36]
Length = 315
Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats.
Identities = 109/164 (66%), Positives = 132/164 (80%), Gaps = 1/164 (0%)
Query: 1 LDLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERI 60
LDLMNHQ+GFDE LY + DKS +EE ++ QPIQSFEPGTTT+YSN+ T L + IVERI
Sbjct: 153 LDLMNHQSGFDEATLYMRSDKS-IEEILKEQQPIQSFEPGTTTAYSNYGTGLAALIVERI 211
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
SGQK+ DY HEH+F+PL MD+TAILPDLSDN+YVQ+KR+E KGYD QGK+L + + +
Sbjct: 212 SGQKFVDYAHEHIFQPLGMDKTAILPDLSDNSYVQKKRQEAKGYDIQGKVLSKDSYIVGL 271
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHP 164
YP+G A GTL DLQKFAQALL RKTLF RPE W+ LYS + T+P
Sbjct: 272 YPIGAATGTLKDLQKFAQALLARKTLFERPEAWSTLYSPSLTYP 315
>gi|83858968|ref|ZP_00952490.1| FmtA-like protein [Oceanicaulis alexandrii HTCC2633]
gi|83853791|gb|EAP91643.1| FmtA-like protein [Oceanicaulis alexandrii HTCC2633]
Length = 501
Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats.
Identities = 74/224 (33%), Positives = 110/224 (49%), Gaps = 19/224 (8%)
Query: 1 LDLMNHQAGFDEM-----PLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSY 55
+DLM+H G ++ P ++ DL RD P + + PG +YSN+ TAL Y
Sbjct: 151 VDLMSHSPGMSDVSGITAPTVEELTPYDL--WIRDNVPERLWAPGKEAAYSNYGTALAGY 208
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTP 115
IVER+SG+ +ADYV H+F PL M T+ L + + R GY+ + L + P
Sbjct: 209 IVERVSGEPFADYVERHIFTPLGMTSTSFREPLPEALQPRMAR----GYELENGRLVEQP 264
Query: 116 FKLW--MYPVGGAVGTLGDLQKFAQALLE----RKTLFHRPETWTELYSTTSTHPGTDIV 169
F+L+ + P G A T D+ +F A+L P + + L+S S D+
Sbjct: 265 FELFSNIMPAGSASSTAHDMARFMLAMLNDGVYEGARILEPSSVSTLFS-DSLRNAPDLP 323
Query: 170 RNAHGFW-ASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILT 212
AHGF+ G L+GH+GN F S L L ++G G + T
Sbjct: 324 GMAHGFYVVREAGPRLVGHAGNTGDFHSNLILAPEHGFGFFVST 367
>gi|123446900|ref|XP_001312196.1| beta-lactamase family protein [Trichomonas vaginalis G3]
gi|121894035|gb|EAX99266.1| beta-lactamase family protein [Trichomonas vaginalis G3]
Length = 647
Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats.
Identities = 82/289 (28%), Positives = 130/289 (44%), Gaps = 29/289 (10%)
Query: 1 LDLMNHQAGFDEMP----LYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYI 56
L+LM+H AG+DE L D E+ + +P +PG YSNF A+ I
Sbjct: 125 LNLMHHDAGWDETIDSPILPHSTSDEDPEDSIKRMEPRSYSKPGQFVGYSNFGVAVEGLI 184
Query: 57 VERISGQKYADYVHEHVFEPLEMDRTAILP---DLSDNAYVQEKRKEDKGYDD-QGKLLG 112
+E++SG KY DY+ +++F+ L M ++I P D+S N + GY GKL
Sbjct: 185 IEKVSGVKYCDYIKQNIFDKLGMTHSSIDPSRKDISSNEFSNLA----SGYATVDGKLKY 240
Query: 113 DTPFKLWMYPVGGAVGTLGDLQKFAQALLERK----TLFHRPETWTELYSTTST-----H 163
P +++ P G + T+GDL FA ++ + LF + +T EL+ S
Sbjct: 241 QDPTSVFLAPAGSCISTIGDLSIFANSITPVQGVECPLFEKNDT-LELFLNNSKIISQGS 299
Query: 164 PGTDIVRNAHGFWASHYGVTLLG--HSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYN 221
PG +HG W +Y +LG H GN G S+ + + K G V N + +
Sbjct: 300 PGI-----SHGLWEEYYTNKILGLEHLGNTPGQSAVISILPKEGWNYVGFANTYADFLMT 354
Query: 222 VQMPELIFGKMQTVSEATKKQFKSGSYHYLRSYNRGPLSFMLMIPGAIQ 270
I+G +S + +G Y R + G LS + ++ I+
Sbjct: 355 YSFHRYIWGLYTPISNNSIPNDAAGYYQNNRIVHSGFLSHITLLNSLIE 403
>gi|148557506|ref|YP_001265088.1| beta-lactamase [Sphingomonas wittichii RW1]
gi|148502696|gb|ABQ70950.1| beta-lactamase [Sphingomonas wittichii RW1]
Length = 677
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 82/313 (26%), Positives = 138/313 (44%), Gaps = 30/313 (9%)
Query: 3 LMNHQAGFDEMPLY----KKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVE 58
LM H AGF+E Y K K L + + P + + PGT +YSN+ +L +YIVE
Sbjct: 178 LMTHTAGFEETAKYLIVEKAEQKHSLGHVLKRWVPTRIYAPGTMPAYSNYGASLAAYIVE 237
Query: 59 RISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKL 118
R+SG+++ DYV H+F PL M ++ L A++ KGY+ + PF++
Sbjct: 238 RVSGERFEDYVQRHIFTPLGMRHSSFEQPLP--AHLAPLLS--KGYNLASE--DPKPFEI 291
Query: 119 -WMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFW- 176
M P G T D+ +F A L+ + PET +++ + P + GF+
Sbjct: 292 VEMAPAGALSSTGTDMARFMLAFLDNRGALISPETRARMFADVN-RPLPGLPAMGLGFYH 350
Query: 177 ASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQV-------------ILTNQLYEQVYNVQ 223
G ++GH G+ + F S L+L + G+G ++ +L+EQ +
Sbjct: 351 EDRNGEVIVGHGGDTNWFHSDLHLIVDKGVGVYMSFNSSGKDTAAHVIRQRLFEQFMDRY 410
Query: 224 MPELIFGKMQTVSEATKKQFKSGSYHYLRSYNRGPLSFMLMIPGAIQKINKVSDQPDLLS 283
P+ T + + +G HYL S RG + L G + + + + +S
Sbjct: 411 FPDPNSEPRTTATAREHGRLMAG--HYLLS--RGSATNWLRFVGLLSEAEVIPNDDGTIS 466
Query: 284 TFWTIDRSQGADR 296
+D + R
Sbjct: 467 VSMLVDPAGAPKR 479
>gi|83858958|ref|ZP_00952480.1| FmtA-like protein [Oceanicaulis alexandrii HTCC2633]
gi|83853781|gb|EAP91633.1| FmtA-like protein [Oceanicaulis alexandrii HTCC2633]
Length = 655
Score = 96.3 bits (238), Expect = 3e-18, Method: Composition-based stats.
Identities = 76/217 (35%), Positives = 103/217 (47%), Gaps = 21/217 (9%)
Query: 2 DLMNHQAGFDEMPLYKK--GDKS---DLEEQFRDYQPIQS-FEPGTTTSYSNFSTALVSY 55
+LM H AGF E LY GD + LEE + P F PG T YSN+ TAL Y
Sbjct: 156 NLMTHTAGFQER-LYNLIIGDPALNLSLEEFLKQAPPPSRIFPPGETPGYSNYGTALAGY 214
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAI---LPDLSDNAYVQEKRKEDKGYDDQGKLLG 112
IV+R++GQ + DYV EHVF P+ M+R LP + V G +L+
Sbjct: 215 IVQRVTGQGFEDYVDEHVFAPMGMERATFRQPLPAEFEPFMVNGYASASDGVAQYYELVP 274
Query: 113 DTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRN- 171
M P G + + +F ALLER ETW ++Y T +P T +
Sbjct: 275 -------MSPAGSVAASGEAMGRFMIALLERNPEVMSAETWEQMYET--LYPLTPPLNAM 325
Query: 172 AHGFWASHYG-VTLLGHSGNADGFSSYLYLDLKNGIG 207
A GFW G + + GH G+ + F S L + L +G+G
Sbjct: 326 ALGFWQLDKGDLRIRGHGGDTNFFHSDLNVMLDDGVG 362
>gi|123495373|ref|XP_001326723.1| beta-lactamase family protein [Trichomonas vaginalis G3]
gi|121909642|gb|EAY14500.1| beta-lactamase family protein [Trichomonas vaginalis G3]
Length = 562
Score = 95.1 bits (235), Expect = 8e-18, Method: Composition-based stats.
Identities = 76/270 (28%), Positives = 129/270 (47%), Gaps = 20/270 (7%)
Query: 1 LDLMNHQAGFDEMPLYK--KGDKSD--LEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYI 56
++LMNH +D+ G K D LE+ + +P Q PGT SYS++ A+ I
Sbjct: 127 INLMNHDTCWDDTAEKSIVPGSKIDIDLEDVIKKNEPRQFCRPGTFVSYSDYGLAVEGLI 186
Query: 57 VERISGQKYADYVHEHVFEPLEMDRTAILP---DLSDNAYVQEKRKEDKGYDDQGKLLGD 113
V+++S KY++YV +++F+ L M R++I P D+S++ V E + ++ + + +
Sbjct: 187 VDKVSNMKYSEYVKKNIFDRLGMRRSSIDPMRNDISEDILVNEAKP--YAFNSKRNRIEE 244
Query: 114 TP-FKLWMYPVGGAVGTLGDLQKFAQALL---ERKTLFHRPETWTELYSTTSTHPGTDIV 169
T + YP G A+ T+ DL FA AL+ LF T +E Y+ T
Sbjct: 245 TEYYSNQFYPSGSALSTISDLSIFANALVGTNNSTPLFKNISTLSEFYNITKKDE----- 299
Query: 170 RNAHGFWASHYGVTLLG--HSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPEL 227
R +HG + +Y + G H GN G+++Y+ L + G V ++N E V +
Sbjct: 300 RISHGLFQQYYSGRIKGYDHRGNNVGYTAYISLLPEYGFSYVGMSNLQDEYVISKSFHRT 359
Query: 228 IFGKMQTVSEATKKQFKSGSYHYLRSYNRG 257
++G +E + S Y +RG
Sbjct: 360 LWGLYNPSNEKVISYYISSYYRPTNIVHRG 389
>gi|123424083|ref|XP_001306507.1| beta-lactamase family protein [Trichomonas vaginalis G3]
gi|121888085|gb|EAX93577.1| beta-lactamase family protein [Trichomonas vaginalis G3]
Length = 644
Score = 90.1 bits (222), Expect = 3e-16, Method: Composition-based stats.
Identities = 61/249 (24%), Positives = 120/249 (48%), Gaps = 31/249 (12%)
Query: 1 LDLMNHQAGFDEMP----LYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYI 56
++LMNH G+DE ++ K +LE R +P Q PGT S+S++ A+ I
Sbjct: 127 INLMNHDTGWDETAEKSIVHGNKIKVNLENVIRKNEPQQFCRPGTFVSFSDYGVAVEGLI 186
Query: 57 VERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK--RKEDKGY---DDQGKLL 111
VE++S KY YV ++ + L M+ T++ P +D + E R K Y ++ +++
Sbjct: 187 VEKVSKMKYWKYVRMNILKRLGMNMTSVDPQRND---ISEDMLRNMAKPYALQNEDMRII 243
Query: 112 GDTPFKLWMYPVGGAVGTLGDLQKFAQALLERK---TLFHRPETWTELYSTTSTHPGTDI 168
F YP G + T+ D+ KF +L+ ++ +F ET+ E Y+ + +
Sbjct: 244 ETEIFSNQFYPSGSVISTISDMSKFVDSLIWKEGTNNIFKNKETYIEFYNISK-----ES 298
Query: 169 VRNAHGFWASHYGVTLLG--HSGNADGFSSYL---------YLDLKNGIGQVILTNQLYE 217
R +HG + Y ++G H G G+++++ Y+ + N +++ +
Sbjct: 299 ARISHGLFQQIYSDKIIGYDHQGKTIGYTAFMSILPDQGFSYVGVSNIQDDFVISRAFHR 358
Query: 218 QVYNVQMPE 226
+++ + +P+
Sbjct: 359 KLWGIYVPK 367
>gi|103486950|ref|YP_616511.1| beta-lactamase [Sphingopyxis alaskensis RB2256]
gi|98977027|gb|ABF53178.1| beta-lactamase [Sphingopyxis alaskensis RB2256]
Length = 657
Score = 84.7 bits (208), Expect = 1e-14, Method: Composition-based stats.
Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 15/218 (6%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPI----QSFEPGTTTSYSNFSTALVSYIVE 58
+M H AGF+E + + + ++ P+ + F PGTT +YSN++TAL YIVE
Sbjct: 156 IMTHTAGFEESVRHLISSDPEAVKTLKELMPLALPERVFAPGTTPAYSNYATALAGYIVE 215
Query: 59 RISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDD-QGKLLGDTPFK 117
R+SGQ + DYV +F+PL M + L + KGY D GK PF+
Sbjct: 216 RVSGQGFDDYVENRIFKPLGMTHSTFRQPLP----ARLAPHMAKGYADVTGK---PQPFE 268
Query: 118 LWMYPVGGAVGTLG-DLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFW 176
+ + GA+ G D+ KF A L +PET +++ + G + A GF+
Sbjct: 269 MVIPAPAGAMSASGADMAKFMIAHLNGGGGILKPETARQMHDFKAAGVGP-LNSMALGFY 327
Query: 177 ASHY-GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
G + H G+ F SYL+L ++ IG + N
Sbjct: 328 EQWVNGRRAIAHGGDTVWFHSYLWLFPESDIGIFLSMN 365
>gi|114799769|ref|YP_760316.1| beta-lactamase [Hyphomonas neptunium ATCC 15444]
gi|114739943|gb|ABI78068.1| beta-lactamase [Hyphomonas neptunium ATCC 15444]
Length = 668
Score = 83.2 bits (204), Expect = 3e-14, Method: Composition-based stats.
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 22/222 (9%)
Query: 3 LMNHQAGFDE----MPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVE 58
LM H +GF+E + + L + + + P + PG +YSN+ TAL YIVE
Sbjct: 170 LMTHTSGFEESVKDLIVRAPSPVPALGDYVKTHLPERVSAPGEVPAYSNYGTALAGYIVE 229
Query: 59 RISGQKYADYVHEHVFEPLEMDRTAI---LP-DLSDNAYVQEKRKEDKGYDDQGKLLGDT 114
R SG+++ DYV H+F PLEM ++ LP +L+DN K ++D
Sbjct: 230 RASGERFDDYVERHIFAPLEMQSSSFRQPLPAELADNMSGAFKTRDDN---------ASQ 280
Query: 115 PFKLW-MYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTH-PGTDIVRNA 172
P++L P G T D+ +F A L PET E+ + + P + + A
Sbjct: 281 PYELIPAAPAGALASTAEDMARFMIAHLNAGAGLLSPETANEMQAAATPFLPPLNTM--A 338
Query: 173 HGFWAS-HYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
GF+ GV +GH G+ F S + L + +G I N
Sbjct: 339 LGFYQQDRLGVRAIGHGGDTVYFHSDMSLFPDHNVGLFISVN 380
>gi|123498907|ref|XP_001327505.1| beta-lactamase family protein [Trichomonas vaginalis G3]
gi|121910435|gb|EAY15282.1| beta-lactamase family protein [Trichomonas vaginalis G3]
Length = 663
Score = 82.4 bits (202), Expect = 6e-14, Method: Composition-based stats.
Identities = 76/277 (27%), Positives = 121/277 (43%), Gaps = 34/277 (12%)
Query: 1 LDLMNHQAGFD---EMPLYKKGDKS-DLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYI 56
++LMNH G+D E + S +LE+ +P Q +PGT SYS+F A+ I
Sbjct: 121 INLMNHDTGWDMTAEDSIIPGNRISVNLEDVILKNEPRQFCKPGTFVSYSDFGVAVEGLI 180
Query: 57 VERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKR----KEDKGYDDQGKLLG 112
+E++S Y +YV +++ L M+ T+I P +D + Q + E K KL
Sbjct: 181 IEKVSKINYIEYVKKNILSKLGMNNTSIDPLRTDISEDQLSKLAIPYEIKTKKGISKLQE 240
Query: 113 DTPFKLWMYPVGGAVGTLGDLQKFAQALLERKT---LFHRPETWTELYSTTSTHPGTDIV 169
+ YP G A+ T+ DL FA AL+ + LF T E Y T +P
Sbjct: 241 TKFYSNQFYPSGSAISTITDLSIFANALVGKNNQSYLFKYNSTLLEFYKLTKENPNI--- 297
Query: 170 RNAHGFWASHYGVTLLGH--SGNADGFSSYLYLDLKNGIGQVILTN-------------- 213
+HG + +Y ++G GN F+S++ L + G V ++N
Sbjct: 298 --SHGLFQQYYSGRIIGFDLQGNTMVFTSFISLLPEEGFSYVGISNLQNDLFISRAFHHE 355
Query: 214 --QLYEQVYNVQMPELIFGKMQTVSEATKKQFKSGSY 248
LY Q N+ +P + G + + + FK Y
Sbjct: 356 LWGLYTQTTNLSIPYELAGDYVSTNIIHRGFFKRQYY 392
>gi|94970856|ref|YP_592904.1| beta-lactamase [Acidobacteria bacterium Ellin345]
gi|94552906|gb|ABF42830.1| beta-lactamase [Acidobacteria bacterium Ellin345]
Length = 658
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 2 DLMNHQAGFDE----MPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIV 57
++M H AGF+E + + K DL +QP + + PG +YSN++T L YIV
Sbjct: 161 NIMTHTAGFEEAVKDLITADQNGKEDLRGYVISHQPRRIYPPGKVPAYSNYATTLAGYIV 220
Query: 58 ERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFK 117
+R+SG+ + DY+ H+++PL M+ L D G + P++
Sbjct: 221 QRVSGEPFDDYIEHHIYQPLHMEHATFRQPLPKGWEANVSSGYDVGSGEA------KPYE 274
Query: 118 -LWMYPVGGAVGTLGDLQKFAQALLE----RKTLFHRPETWTELYSTTSTHPGTDIVRNA 172
+ +P G T D+ F A L+ + T +++S T + G +
Sbjct: 275 FVTAFPAGSVAITADDISHFMIAHLQNGEYEGAQILQTATAQKMHSRTFS-VGPRLNGMC 333
Query: 173 HGFWASHY-GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
GF+ + G T++GH+G+ F S L+L L + +G I N
Sbjct: 334 LGFYQENRNGHTIIGHAGDTQYFHSDLHLILDSNVGFFISQN 375
>gi|118478545|ref|YP_895696.1| possible penicillin-binding protein [Bacillus thuringiensis str. Al
Hakam]
gi|118417770|gb|ABK86189.1| possible penicillin-binding protein [Bacillus thuringiensis str. Al
Hakam]
Length = 667
Score = 77.8 bits (190), Expect = 1e-12, Method: Composition-based stats.
Identities = 71/274 (25%), Positives = 122/274 (44%), Gaps = 28/274 (10%)
Query: 3 LMNHQAGFD------EMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYI 56
L+ H GFD E Y+ D + L++ D P +PG T +Y NF++ L YI
Sbjct: 152 LLTHTTGFDYVDPRPEDIHYQDNDYTMLKDYVEDNMPTVVRKPGDTYTYDNFASMLQGYI 211
Query: 57 VERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF 116
V+ ++ + Y+ +++F PLEM ++ + +++EK GYD +G +
Sbjct: 212 VQNLTNTPFYKYMAKNIFYPLEMHNSSFVM----TNFIKEKLA--TGYDAKGNAIPFYQT 265
Query: 117 KLWMYPVGGAVGTLGDLQKFAQALLE----RKTLFHRPETWTELYSTT-STHPGTDIVRN 171
+ P G T D+ F A L + + ET ++ T + HP +
Sbjct: 266 RPTDMPQGSMFSTGSDVANFMIAQLNDGKFKNNQILQKETVEDMQKTKFALHPKYPNMTY 325
Query: 172 AHGFWA--SHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN--------QLYEQVYN 221
F++ SH G + G GN GFSS ++L ++ IG ++TN ++++ N
Sbjct: 326 GFEFFSPQSHNGQYVFGKGGNIPGFSSLMWLIPEHKIGVFVVTNKDSSALPVEVFDDFMN 385
Query: 222 VQMPELIFGKMQTVSEATKKQFKSGSYHYLRSYN 255
P+ + +E K+F+ G Y LR N
Sbjct: 386 EYFPDKTKPEYLKPNEEELKKFE-GVYRDLRLKN 418
>gi|88859794|ref|ZP_01134433.1| hypothetical beta-lactamase precursor (penicillin-binding protein)
[Pseudoalteromonas tunicata D2]
gi|88817788|gb|EAR27604.1| hypothetical beta-lactamase precursor (penicillin-binding protein)
[Pseudoalteromonas tunicata D2]
Length = 356
Score = 71.6 bits (174), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 3 LMNHQAG----FDEMPLYKKGDKSDLEEQFRDY---QPIQSFEPGTTTSYSNFSTALVSY 55
L+ HQ+G F+++ ++ D ++ Y P+ F G+ YSN L++
Sbjct: 128 LLVHQSGIPDIFNDLETHQIIDNEITNDKIFHYFIENPMLEFNAGSNEDYSNTGYVLLAK 187
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTP 115
IV ++G +A Y+ +F PL M+ + I L ++A + E+ + + K+ G
Sbjct: 188 IVNIVTGNTFASYMESEIFSPLGMNHSYI---LDEHAEITEQTAMNLATEH--KIFGRES 242
Query: 116 FKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHG- 174
F Y V ++ D+Q+F A + K L +PET + +T S P + + N G
Sbjct: 243 FS---YGSAAQVSSMVDMQRFLSAFMTGKIL--QPETKALMMTTYS--PPDESLFNGTGY 295
Query: 175 --FWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
F+ S G T+ GH+G DGF + ++ + VIL N
Sbjct: 296 GIFYFSDDGKTVYGHTGGHDGFRTIYAINREKNAFIVILGN 336
>gi|38141539|emb|CAE53429.1| putative alkaline D-stereospecific endopeptidase [Bacillus cereus]
Length = 386
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 24/209 (11%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ----------SFEPGTTTSYSNFSTAL 52
++NH +G E Y K D+ + + Y P + F PG SYSN +
Sbjct: 152 ILNHTSGIAE---YLKSKDYDIMDTKKLYTPEELVKMGISLPPDFAPGKGWSYSNTGYVI 208
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYD--DQGKL 110
+ ++E+I+G YA+ V + EPLE+ T L N+ V +GY+ D G
Sbjct: 209 LGILIEKITGNSYAEEVENRIVEPLELSNTF----LPGNSTVIPGTNHARGYERYDGGSE 264
Query: 111 LGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVR 170
L D + G + T DL KF LL K L + + ++ +T T +I R
Sbjct: 265 LKDVTYSYPGSSDGDMISTADDLNKFFSYLLSGKLL--KEQQLKQMLTTVPTGIA-EIGR 321
Query: 171 NAHGFWASHY--GVTLLGHSGNADGFSSY 197
G + + GV++ GH+G + GFS++
Sbjct: 322 YGLGIYETKLPNGVSIWGHAGASPGFSTF 350
>gi|124485162|ref|YP_001029778.1| hypothetical protein Mlab_0335 [Methanocorpusculum labreanum Z]
gi|124362703|gb|ABN06511.1| beta-lactamase [Methanocorpusculum labreanum Z]
Length = 533
Score = 70.9 bits (172), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 2 DLMNHQAGFDEMPLYKKGDKSDLEEQF------RDYQPIQSFEPGTTTSYSNFSTALVSY 55
+LM H AGF++ ++ D+++ F RDY P + + PGT TSYSN+ T L +
Sbjct: 162 NLMTHTAGFEDA--IRRATVEDVDDLFSFRIYCRDYIPARVYPPGTVTSYSNYGTTLAAV 219
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRT 82
IVE +SG + Y+ EH+ PL++ T
Sbjct: 220 IVEDVSGMPFEQYLQEHILTPLDLKNT 246
>gi|56460918|ref|YP_156199.1| Beta-lactamase class C family protein [Idiomarina loihiensis L2TR]
gi|56179928|gb|AAV82650.1| Beta-lactamase class C family protein [Idiomarina loihiensis L2TR]
Length = 473
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 68/228 (29%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRD---YQPIQS-----FEPGTTTSYSNFSTALVS 54
L+ H +GF + +KS+ +E +RD Y+P+ S F PGT YSN ++
Sbjct: 242 LLTHTSGFGNF-FNDEFNKSN-KEAYRDLTAYKPLVSSSPLLFSPGTQNRYSNSGMLMLG 299
Query: 55 YIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDT 114
++E ++G Y DYV E+++ M T S N + + DD +
Sbjct: 300 LVIESVTGTSYYDYVQENIYNKAGMINTGSFELDSSNQNLATGYLKRSYSDDWVNSIYTR 359
Query: 115 PFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHG 174
K P GG T+GDL KFA AL E K L E E YS + +
Sbjct: 360 AIK--GSPAGGGFSTVGDLHKFAIALTEYKLL--SKELTEEAYSEKTDYNS--------A 407
Query: 175 FWASHYGVT--------LLGHSGNADGFSSYLYLDLKNGIGQVILTNQ 214
FW YG + ++GH G G + L + L G VIL NQ
Sbjct: 408 FWYG-YGFSVSGEPNNRIVGHGGAYLGVDARLDIYLDKGFIVVILANQ 454
>gi|21240908|ref|NP_640490.1| beta-lactamase [Xanthomonas axonopodis pv. citri str. 306]
gi|21106185|gb|AAM35026.1| beta-lactamase [Xanthomonas axonopodis pv. citri str. 306]
Length = 394
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 88/197 (44%), Gaps = 19/197 (9%)
Query: 27 QFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILP 86
Q ++Y P++ PGT YSN LV YIV R GQ Y H +F PL M TA
Sbjct: 166 QAQNYLPVK---PGTHREYSNIGAGLVGYIVARAVGQSLERYTHTRIFAPLGMQHTAW-- 220
Query: 87 DLSDNAYVQEKRKEDKGYDDQ-GKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLER-- 143
+A + Y Q G + P++L YP GG ++ DL + ALL+
Sbjct: 221 ----HAADLPAAAQATLYVSQFGVSVPIPPYELTTYPDGGVRTSVNDLSRLFIALLDGGQ 276
Query: 144 ----KTLFHRPETWTELYSTTSTHPGTDIV---RNAHGFWASHYGVTLLGHSGNADGFSS 196
+ L + T+ + ++ +N+ FW++ Y VT +GH G+ G +
Sbjct: 277 YQGVRILDTTTTAQMLRFQYTAANTPDNVALNEKNSGIFWSTKYNVTRIGHGGSDPGVHT 336
Query: 197 YLYLDLKNGIGQVILTN 213
+ DL + V+++N
Sbjct: 337 EMLSDLAHDNAVVLISN 353
>gi|20090206|ref|NP_616281.1| FmtA-like protein [Methanosarcina acetivorans C2A]
gi|19915196|gb|AAM04761.1| FmtA-like protein [Methanosarcina acetivorans C2A]
Length = 671
Score = 69.7 bits (169), Expect = 4e-10, Method: Composition-based stats.
Identities = 60/228 (26%), Positives = 99/228 (43%), Gaps = 23/228 (10%)
Query: 2 DLMNHQAGFDEMPL------YKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSY 55
+LM+H +GF+++ + + D LEE + P + PG T+YSN+ +AL +Y
Sbjct: 173 NLMSHTSGFEDLAISGRFFVHNSTDIMPLEEYLKKGMPARVRPPGELTAYSNYGSALAAY 232
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTP 115
IVE++SG + YV E++ PL+M+ T L + GY P
Sbjct: 233 IVEQVSGMPFDRYVEENILLPLDMNNTTFDQPLP----ARLASNMSNGYVYSNNAYTAKP 288
Query: 116 FK-LWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHG 174
F+ + ++P T D+ KF A L+ R L T+ + + NA G
Sbjct: 289 FEYVQVWPASSMSSTSEDMAKFMIAHLQNG----RYGDKRILQEATAQQMHSRLFTNAPG 344
Query: 175 FWASHYGV--------TLLGHSGNADGFSSYLYLDLKNGIGQVILTNQ 214
YG ++GH G+ F + L L ++ +G I N+
Sbjct: 345 VNGVTYGFLEINPENPRVIGHEGDTILFHTQLALIPESQLGLFISLNE 392
>gi|148271885|ref|YP_001221446.1| putative beta lactamase/penicillin-binding protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147829815|emb|CAN00735.1| putative beta lactamase/penicillin-binding protein [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 689
Score = 68.6 bits (166), Expect = 9e-10, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 24/213 (11%)
Query: 3 LMNHQAGFDEMP---LYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVER 59
L+ H +GF+E+ + G + DL + R P Q F PGTT +YSN+ +L Y+ ER
Sbjct: 176 LLTHTSGFEEVITGLIGVAGSERDLGDVMRTDPPEQVFVPGTTPAYSNYGASLAGYVAER 235
Query: 60 ISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLW 119
++G + D V + V + M ++ L + + KGY D + T +
Sbjct: 236 VAGTPFVDLVQQEVLDRAGMTSSSFAQPLPADL----DARLAKGYPDDAQPSYPTEV-VN 290
Query: 120 MYPVGGAVGTLGDLQKF----------AQALLERKTL--FHRPETWTELYSTTSTHPGTD 167
P G T D+ +F QALL+ TL HRP + T + D
Sbjct: 291 AAPAGALSATASDMARFMLGHLGDLPDEQALLDPATLDEMHRPALGADQLGTLAVGQRMD 350
Query: 168 IVRNAHGFWASHYGVTLLGHSGNADGFSSYLYL 200
+ F S G GH G+ + F + + +
Sbjct: 351 LAF----FDDSTPGAPAFGHDGDTNVFHTAMRM 379
>gi|123418309|ref|XP_001305294.1| beta-lactamase family protein [Trichomonas vaginalis G3]
gi|121886805|gb|EAX92364.1| beta-lactamase family protein [Trichomonas vaginalis G3]
Length = 656
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 63/258 (24%), Positives = 112/258 (43%), Gaps = 34/258 (13%)
Query: 2 DLMNHQAGFDEMPL---YKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVE 58
+L+N+ G+D + K G D+ + R +P Q ++ G S + F+ + + IVE
Sbjct: 126 NLLNYDTGYDTTYIDNYIKYGSTLDVRDYIRWNEPKQIYDTGKRYSDTLFAAIIEAMIVE 185
Query: 59 RISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGDTPF 116
+IS KY+DYV +++F+ L M+ T+I + ++ +K GY D +
Sbjct: 186 KISDMKYSDYVEKNIFQKLGMNHTSI-----SQSRIEFDKKLTSGYQMDGNKSFTKMKKY 240
Query: 117 KLWMYPVGGAVGTLGDLQKFAQALL----------------------ERKTLFHRPETWT 154
+ YP A+GTL DL + ++ LF ET
Sbjct: 241 SVGPYPATTAIGTLRDLTVLVNEFILIQNQANYLKSDEAKSKSEMTTQKLRLFESEETVK 300
Query: 155 ELYSTTSTHPG-TDIVRNAHGFWASHY-GVTLLGHSGNADGFSSYLYLDLKNGIGQVILT 212
E + +S G T + ++GF+ +Y V L G G ++ + + G VI+T
Sbjct: 301 EFINVSSYVCGDTKFGQISNGFFTEYYNNVKTLFLKGKTIGSTATILFTPELGFSTVIMT 360
Query: 213 NQLYEQVYNVQMPELIFG 230
N E++ N + ++G
Sbjct: 361 NLYNERMLNNGLNRYLYG 378
>gi|156742180|ref|YP_001432309.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseiflexus castenholzii
DSM 13941]
gi|156233508|gb|ABU58291.1| Serine-type D-Ala-D-Ala carboxypeptidase [Roseiflexus castenholzii
DSM 13941]
Length = 442
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 73/221 (33%), Positives = 101/221 (45%), Gaps = 42/221 (19%)
Query: 8 AGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
AGF+ + +L E+FRD+ P+ SF PGT Y N + L+ I+ER+SG +YAD
Sbjct: 225 AGFEPTEM-NPATPQELVERFRDF-PL-SFAPGTLYHYCNSNYVLLGLIIERVSGMEYAD 281
Query: 68 YVHEHVFEPLEMDRTAILPDLS-----DNA--YVQEKRKEDKGYDDQGKLLGDTPFKLWM 120
Y+ + F PL M T D S D A YV RK G+ D L
Sbjct: 282 YLEQRFFVPLGMTNTGY--DTSRGTIIDGAQGYVTPGRKS--GFLDASTL---------- 327
Query: 121 YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGF-WASH 179
Y GG T+GDL ++ QAL + L T T+L T +RN +GF W
Sbjct: 328 YAAGGLYSTVGDLFRWDQALSTEEAL-----TRTQLEQMF-----TPALRN-YGFGWKIE 376
Query: 180 Y--GVTLLGHSGNADGFSSYL--YLDLKNGIGQVILTNQLY 216
G + H GN G +++ Y D + I ++L N Y
Sbjct: 377 TIDGRRRISHPGNMTGVATFFARYPDDRATI--IVLANMEY 415
>gi|38141541|emb|CAE53430.1| D-stereospecific endopeptidase [Bacillus cereus]
Length = 388
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 18/206 (8%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G E K D D ++ + + ++ F PG SYSN ++
Sbjct: 152 ILNHTSGIAEYLKSKDYDIMDTKKLYTAEELVKMGISLPPDFAPGKGWSYSNTGYVILGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYD--DQGKLLGD 113
++E+++G YA+ V + EPLE+ T L N+ V K +GY+ D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIVEPLELSNTF----LPGNSTVIPGTKHARGYERYDGESELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T +I R
Sbjct: 268 VTYSYPGSSDGDMISTADDLNKFFSYLLSGKLL--KEQQLKQMLTTVPTGIA-EIGRYGL 324
Query: 174 GFWASHY--GVTLLGHSGNADGFSSY 197
G + + GV++ GH+G + GFS++
Sbjct: 325 GIYETKLPNGVSIWGHAGASPGFSTF 350
>gi|30262645|ref|NP_845022.1| alkaline D-peptidase [Bacillus anthracis str. Ames]
gi|47527952|ref|YP_019301.1| alkaline d-peptidase [Bacillus anthracis str. 'Ames Ancestor']
gi|49185486|ref|YP_028738.1| alkaline D-peptidase [Bacillus anthracis str. Sterne]
gi|30257277|gb|AAP26508.1| alkaline D-peptidase [Bacillus anthracis str. Ames]
gi|47503100|gb|AAT31776.1| alkaline D-peptidase [Bacillus anthracis str. 'Ames Ancestor']
gi|49179413|gb|AAT54789.1| alkaline D-peptidase [Bacillus anthracis str. Sterne]
Length = 388
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 18/206 (8%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G E K D D ++ + + ++ F PG SYSN ++
Sbjct: 152 ILNHTSGIAEYLKSKDYDIMDTKKLYTAEELVKMGISLPPDFAPGKGWSYSNTGYVILGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYD--DQGKLLGD 113
++E+++G YA+ V + EPLE+ T L N+ V K +GY+ D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIVEPLELSNTF----LPGNSTVIPGTKHARGYERYDGESELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T +I R
Sbjct: 268 VTYSYPGSSDGDMISTADDLNKFFSYLLSGKLL--KEQQLKQMLTTVPTGIA-EIGRYGL 324
Query: 174 GFWASHY--GVTLLGHSGNADGFSSY 197
G + + GV++ GH+G + GFS++
Sbjct: 325 GIYETKLPNGVSIWGHAGASPGFSTF 350
>gi|49477818|ref|YP_036766.1| alkaline D-peptidase (D-stereospecific peptide hydrolase) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|49329374|gb|AAT60020.1| alkaline D-peptidase (D-stereospecific peptide hydrolase) [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 388
Score = 67.8 bits (164), Expect = 1e-09, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 18/206 (8%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G E K D D ++ + + ++ F PG SYSN ++
Sbjct: 152 ILNHTSGIAEYLKSKDYDIMDTKKLYTAEELVKMGISLPPDFAPGKGWSYSNTGYVILGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYD--DQGKLLGD 113
++E+++G YA+ V + EPLE+ T L N+ V K +GY+ D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIVEPLELSNTF----LPGNSTVIPGTKHARGYERYDGESELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T +I R
Sbjct: 268 VTYSYPGSSDGDMISTADDLNKFFSYLLSGKLL--KEQQLKQMLTTVPTGIA-EIGRYGL 324
Query: 174 GFWASHY--GVTLLGHSGNADGFSSY 197
G + + GV++ GH+G + GFS++
Sbjct: 325 GIYETKLPNGVSIWGHAGASPGFSTF 350
>gi|52142831|ref|YP_083998.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|51976300|gb|AAU17850.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
Length = 388
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 18/206 (8%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G E K D D ++ + + ++ F PG SYSN ++
Sbjct: 152 ILNHTSGIAEYLKSKDYDIMDTKKLYTAEELVKMGISLPPDFAPGKGWSYSNTGYVILGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYD--DQGKLLGD 113
++E+++G YA+ V + EPLE+ T L N+ V K +GY+ D L D
Sbjct: 212 LIEKVTGNSYAEEVESRIVEPLELSNTF----LPGNSTVIPGTKHARGYERYDGESELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T +I R
Sbjct: 268 VTYSYPGSSDGDMISTADDLNKFFSYLLSGKLL--KEQQLKQMLTTVPTGIA-EIGRYGL 324
Query: 174 GFWASHY--GVTLLGHSGNADGFSSY 197
G + + GV++ GH+G + GFS++
Sbjct: 325 GIYETKLPNGVSIWGHAGASPGFSTF 350
>gi|85709021|ref|ZP_01040087.1| beta-lactamase family protein [Erythrobacter sp. NAP1]
gi|85690555|gb|EAQ30558.1| beta-lactamase family protein [Erythrobacter sp. NAP1]
Length = 454
Score = 67.0 bits (162), Expect = 2e-09, Method: Composition-based stats.
Identities = 69/223 (30%), Positives = 98/223 (43%), Gaps = 22/223 (9%)
Query: 2 DLMNHQAGFDEM-PLYKKGDKSDLEEQ-------FRDYQPIQSFEPGTTTSYSNFSTALV 53
+LM H AG + L GD S LE FRD P++ FEPG+ SYSN L+
Sbjct: 125 NLMRHTAGLPNVTSLDGFGDLSRLETSQDDLIAFFRDL-PLE-FEPGSKWSYSNSGYVLL 182
Query: 54 SYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGD 113
S IVE++S Q A Y E F PL M+ + D+S A + KR GY G+ +
Sbjct: 183 SRIVEQVSEQDIATYFDEQFFTPLGMENSGF--DVS--AEILPKRA--AGYSPGGEGRVN 236
Query: 114 TPFKLWMYPVGGAV--GTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRN 171
+ P G T+ DL ++ +AL + L PE+ E + + H +
Sbjct: 237 AGYVFMGIPTGAGAMYSTVSDLHRWNKALYSGEIL--SPESVAE-FVEPAPHDAIGEAKY 293
Query: 172 AHGFWASHY-GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
AHG S + H G GF+++L D +L N
Sbjct: 294 AHGVVVSDSENGQYIWHGGGIQGFNAWLGYDRAKSTTVAVLAN 336
>gi|83857770|ref|ZP_00951298.1| penicillin-binding protein, putative [Croceibacter atlanticus
HTCC2559]
gi|83849137|gb|EAP87006.1| penicillin-binding protein, putative [Croceibacter atlanticus
HTCC2559]
Length = 431
Score = 66.6 bits (161), Expect = 3e-09, Method: Composition-based stats.
Identities = 64/223 (28%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 2 DLMNHQAG---FDEMP-----LYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALV 53
+L+NH++G F P +Y + DL E + +P +F P + YSN + L+
Sbjct: 108 ELLNHRSGIYNFTTSPAFPYMMYNETSHEDLLELIYNLEP--AFYPNDKSEYSNTNYVLL 165
Query: 54 SYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGD 113
SYI+E I GQ YA + + EPL + T + Y L D
Sbjct: 166 SYIIEEIEGQDYAKSLQSRIAEPLGLKNTY----YGKGIEIANNEASSFQYVSSWSKLDD 221
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ + G V T+ DL F +LL + L + ST+ T I H
Sbjct: 222 SHLSI-PSGAGAIVSTVSDLTIFINSLLTTEKL---------ITSTSLDQMKTTIDHFGH 271
Query: 174 G-FWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQL 215
G F Y + GH G+ DGF S LY + I IL+N L
Sbjct: 272 GLFKVPFYEDSGFGHGGSIDGFKSELYYFPASKIAVSILSNGL 314
>gi|89209147|ref|ZP_01187603.1| Beta-lactamase [Bacillus weihenstephanensis KBAB4]
gi|89152921|gb|EAR73034.1| Beta-lactamase [Bacillus weihenstephanensis KBAB4]
Length = 485
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 67/235 (28%), Positives = 102/235 (43%), Gaps = 35/235 (14%)
Query: 2 DLMNHQAGF---DEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVE 58
DL +H+ G D + + DL E+ + F T Y+N A +SYIVE
Sbjct: 112 DLASHRTGVSRHDALWYSSSLTRKDLVEKIKHLSLDAPFR--TAFLYNNLMYATISYIVE 169
Query: 59 RISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDK---GYDDQGKLLGDTP 115
I+ Q + YV EH+ EPL M T N V + + D Y + + + P
Sbjct: 170 NITNQTWEQYVAEHILEPLNMRHT--------NLSVTDSQNTDDYALPYTEDNGEMKEIP 221
Query: 116 FKLWMYPVGGAVG----TLGDLQKFAQALL-ERKTLFH---RPETWTELYSTTSTHPGTD 167
F+ GA G T+ D+ K+ L E KT H E E+Y+ + P
Sbjct: 222 FR--NIDTVGAAGCINSTIEDMAKWVLLHLNEGKTENHDLISTELLQEMYTPHTPIPDQP 279
Query: 168 IVR------NAHG---FWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
++ N++G F +++ G L+ H GN DGFS+ + IG ++LTN
Sbjct: 280 MLSTSESPLNSYGLGWFISAYRGYKLIHHGGNIDGFSALVSFMPHENIGVIVLTN 334
>gi|124009304|ref|ZP_01693983.1| beta-lactamase [Microscilla marina ATCC 23134]
gi|123985081|gb|EAY25025.1| beta-lactamase [Microscilla marina ATCC 23134]
Length = 375
Score = 66.2 bits (160), Expect = 4e-09, Method: Composition-based stats.
Identities = 67/238 (28%), Positives = 110/238 (46%), Gaps = 48/238 (20%)
Query: 6 HQAGFDEMPLYK----KGDKS-DLEEQFRDY-------QPIQSF---EPGTTTSYSNFST 50
+ AG+DE+ K GD S DL E +DY S+ +PG YSN +
Sbjct: 140 NDAGYDELDDSKIYTFGGDTSLDLGEFLKDYLVDGGKYYSTDSYTKDKPGAGFKYSNVGS 199
Query: 51 ALVSYIVERISGQKYADYVHEHVFEPLEMDRTA-ILPDLS-DNAYVQEKRKEDKGYDDQG 108
AL Y+ E ISG+K++DY + +F PL M+ T L D++ D + Y + G
Sbjct: 200 ALCGYLAEAISGEKFSDYSKKVLFTPLGMNNTGWWLKDVNIDQVAIP--------YQNDG 251
Query: 109 KLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDI 168
+ F YP G ++ D+ K +++ TL L STT D+
Sbjct: 252 TAIQHYTFV--DYPNGQLRSSVEDMSKLMLMFMQQGTL----NGQKILESTT-----VDL 300
Query: 169 VRNAHGFW-ASHYGVT-----------LLGHSGNADGFSSYLYLDLKNGIGQVILTNQ 214
++ GF +S++G++ +LGH+G+ G + +LD K+G+G ++ N+
Sbjct: 301 IKARAGFVDSSNFGLSWYYDKTSAGDEILGHNGSERGVQTEFFLDTKSGVGVMVTANK 358
>gi|67077982|ref|YP_245602.1| D-stereospecific peptide hydrolase [Bacillus cereus E33L]
gi|66970288|gb|AAY60264.1| D-stereospecific peptide hydrolase [Bacillus cereus E33L]
Length = 443
Score = 65.9 bits (159), Expect = 6e-09, Method: Composition-based stats.
Identities = 57/213 (26%), Positives = 90/213 (42%), Gaps = 30/213 (14%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ----------SFEPGTTTSYSNFSTAL 52
++NH +G E Y K ++D R Y + F PG SYSN L
Sbjct: 206 MLNHTSGIAE---YSKSKEADFTNPKRVYTAEELVKIGLSAPPDFAPGKGWSYSNTGYVL 262
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKL 110
+ ++E+++G YA+ + + EPLE+ T L N+ + K +GY ++G
Sbjct: 263 LGMLIEKVTGNSYAEEIENRIIEPLELSDTF----LPGNSSIIPGTKHARGYVQQEEGSE 318
Query: 111 LGDTPF--KLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDI 168
L D + G + T DL KF LL K L + + ++ +T T G
Sbjct: 319 LKDVTYFNPSIASSAGDMISTADDLNKFFSYLLSGKVL--KEQQLKQMLTTVPTGRGG-- 374
Query: 169 VRNAHGFWASHY----GVTLLGHSGNADGFSSY 197
N +G GVT+ GH+G GF ++
Sbjct: 375 -INGYGLGIFEIKLPNGVTIWGHTGGIPGFDTF 406
>gi|116621660|ref|YP_823816.1| beta-lactamase [Solibacter usitatus Ellin6076]
gi|116224822|gb|ABJ83531.1| beta-lactamase [Solibacter usitatus Ellin6076]
Length = 394
Score = 65.1 bits (157), Expect = 9e-09, Method: Composition-based stats.
Identities = 66/249 (26%), Positives = 99/249 (39%), Gaps = 48/249 (19%)
Query: 3 LMNHQAGF----DEMPLYKKGDKS--DLEEQFRDYQPIQ--------SFEPGTTTSYSNF 48
L+ H AG D M +KG L Q +D + + F GT+ SYSN
Sbjct: 138 LLTHTAGLPDYEDLMDEAEKGKPPIWTLAHQIQDREVLDLLKQQTRPKFAAGTSWSYSNS 197
Query: 49 STALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDN----AYVQEKRKEDKGY 104
+ ++ IV ++SGQ Y D++ +F+PL MD+T + S+ AY KR+
Sbjct: 198 AYVVLGLIVAKVSGQTYGDFLRARIFQPLHMDQTLAFVNGSNTVPNRAYGHSKRQGKFVQ 257
Query: 105 DDQ---GKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPET--------- 152
DQ LGD GG + DL K+ A L R TL PE
Sbjct: 258 TDQSPTSATLGD----------GGVYSNIADLAKWDDA-LARHTLLGEPEMQPALVPAKL 306
Query: 153 -------WTELYSTTSTHPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNG 205
W + PG + F S G + H+G GF + + ++
Sbjct: 307 ADGSATRWPNTPGGDNLAPGRPVEYGFGWFLDSWQGRPRMWHTGTTQGFRTVIERFPESQ 366
Query: 206 IGQVILTNQ 214
+ +IL+N+
Sbjct: 367 VSVIILSNR 375
>gi|38141543|emb|CAE53431.1| D-stereospecific endopeptidase [Bacillus thuringiensis]
Length = 388
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 18/206 (8%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G E K D ++ + + ++ F PG SYSN ++
Sbjct: 152 ILNHTSGIAEYLKSKDYDIMGTKKLYTAEELVKMGISLPPDFAPGKGWSYSNTGYVILGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYD--DQGKLLGD 113
++E+++G YA+ V + EPLE+ T L N+ V K +GY+ D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIVEPLELSNTF----LPGNSTVIPGTKHARGYERYDGESELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T +I R
Sbjct: 268 VTYSYPGSSDGDMISTADDLNKFFSYLLSGKLL--KEQQLKQMLTTVPTGIA-EIGRYGL 324
Query: 174 GFWASHY--GVTLLGHSGNADGFSSY 197
G + + GV++ GH+G + GFS++
Sbjct: 325 GIYETKLPNGVSIWGHAGASPGFSTF 350
>gi|149585577|ref|XP_001518282.1| PREDICTED: similar to Serine beta-lactamase-like protein LACTB,
mitochondrial, partial [Ornithorhynchus anatinus]
Length = 438
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 100/222 (45%), Gaps = 41/222 (18%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQ--PIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
F++ LY K + E R ++ P+ F+PG+ YS F L+ IVER SGQK+ D
Sbjct: 172 FEQDELYLKEKFENTIESLRIFKNDPL-FFKPGSQFLYSTFGYTLLGAIVERASGQKFVD 230
Query: 68 YVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF--KLWMYPVGG 125
Y+ + +F L M T +N V R Y+ +G+L+ +TP+ + + GG
Sbjct: 231 YMQK-IFHELGMPTTV----QEENEPVIYNRARFYAYNKKGRLV-NTPYVDNSYKWAGGG 284
Query: 126 AVGTLGDLQKFAQALLERKTL-------------FHRPETWTELYSTTSTHPGTDIVRNA 172
+ T+GDL +F A+L + + +PET +++ P T++ +
Sbjct: 285 YLSTVGDLLRFGNAMLYGYQVGMLKNSDGRLLPGYLKPETMMMMWTPV---PNTEMSWDR 341
Query: 173 HGFWASHYGVT--------------LLGHSGNADGFSSYLYL 200
G +A +GV H+G A G SS L +
Sbjct: 342 EGKYAMAWGVVEKQQRYGSCRQQRHYASHTGGAVGASSVLLI 383
>gi|126652130|ref|ZP_01724312.1| hypothetical protein BB14905_10680 [Bacillus sp. B14905]
gi|126591038|gb|EAZ85149.1| hypothetical protein BB14905_10680 [Bacillus sp. B14905]
Length = 478
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 27 QFRDYQPIQSF-EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAI- 84
QF D Q I+ PGT SYSN S AL+ I+ERISG+ Y Y+++H+ P M+ +
Sbjct: 162 QFIDEQDIELLGAPGTHFSYSNESYALLGTIIERISGKSYEQYIYDHILTPCGMENSYFT 221
Query: 85 LPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLW-----MYPVGGAVGTLGDLQKFAQA 139
+ + +D + EDK D K + P +W M G T D+ +A+
Sbjct: 222 IEEYADYENITTCYTEDK--SDGTKHVLAAP--IWWDSTSMRAAGFLKSTARDMLLYAE- 276
Query: 140 LLERKTLFHRPETWTELYSTTSTHPGTDIVRN---AHGFWAS--HYGVTLLGHSGNADGF 194
+ + + +E T P + +GF + ++G TL+ H G G
Sbjct: 277 IFRNAGVVDGKQILSEESVKEMTKPHIQLQPGRFYGYGFMITPDYFGTTLIEHGGGLKGI 336
Query: 195 SSYLYLDLKNGIGQVILTN 213
S+ L + + G+ V+LTN
Sbjct: 337 SAQLSILPEKGVTGVVLTN 355
>gi|91218158|ref|ZP_01255107.1| beta-lactamase [Psychroflexus torquis ATCC 700755]
gi|91183705|gb|EAS70099.1| beta-lactamase [Psychroflexus torquis ATCC 700755]
Length = 393
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 21/206 (10%)
Query: 13 MPLYKKGDKSDLEEQ--FRDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVH 70
MPL + K +++Q + Q + PG T YSN + +YI+E+ +G+ YA++V
Sbjct: 179 MPLGEFIKKQYVKDQTWYNKEQNFSNKHPGNTYKYSNMGANIAAYIIEQTTGENYAEFVK 238
Query: 71 EHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDD---QGKLLGDTPFKLWMYPVGGAV 127
EH+ PL+M+ T + K E K G + D L YP G +
Sbjct: 239 EHILHPLQMNNTGW----------RGKNYEPKNVSSLYWYGYPMPDA--DLITYPDGNLI 286
Query: 128 GTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHYGVTLLGH 187
+ D KF ++ R E Y P + R FW +GH
Sbjct: 287 SNVIDYGKFLSTMI-RGYKGEDNLLTAESYKEMMKDPVSSDFRKGV-FWT--VDSEKIGH 342
Query: 188 SGNADGFSSYLYLDLKNGIGQVILTN 213
SGN G S+ Y +NGIG ++ N
Sbjct: 343 SGNDLGLLSHAYFLRENGIGIIVFVN 368
>gi|126277299|ref|XP_001374581.1| PREDICTED: similar to Serine beta-lactamase-like protein LACTB,
mitochondrial [Monodelphis domestica]
Length = 555
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 61/222 (27%), Positives = 104/222 (46%), Gaps = 41/222 (18%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQ--PIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
F++ LY K + E R ++ P+ F+PG+ YS F +L++ ++ER SGQK+ D
Sbjct: 293 FEQDELYLKEKFENSIESLRLFKNDPL-FFKPGSQFLYSTFGYSLLAAVIERASGQKFLD 351
Query: 68 YVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF--KLWMYPVGG 125
Y+ + +F L+M T +N + R Y+ +G+L+ +TP+ + + GG
Sbjct: 352 YMQK-IFHDLDMVTTV----QEENEPMIYNRARFYVYNKKGRLV-NTPYVDNSYKWAGGG 405
Query: 126 AVGTLGDLQKFAQAL-----------LERKTL--FHRPETWTELYSTTSTHPGTDIVRNA 172
+ T+GDL KF A+ L K L + +PET +++ P T++ +
Sbjct: 406 FLSTVGDLLKFGNAMLYGYQIGMIKNLSEKLLPGYLKPETMVMIWTPV---PNTEMSWDR 462
Query: 173 HGFWASHYGVT--------------LLGHSGNADGFSSYLYL 200
G +A +GV H+G A G SS L +
Sbjct: 463 EGKYAMAWGVVEKKQTHGSCRQQRHYASHTGGAVGASSVLLI 504
>gi|15893474|ref|NP_346823.1| Similar to beta-lactamase [Clostridium acetobutylicum ATCC 824]
gi|15023011|gb|AAK78163.1|AE007531_5 Similar to beta-lactamase [Clostridium acetobutylicum ATCC 824]
Length = 351
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 32/241 (13%)
Query: 1 LDLMNHQAGFDE-MPLYK--KGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIV 57
+L+ H AGF PLYK KG + ++ R S++PGT YS+FS L++YI+
Sbjct: 109 FNLLTHTAGFVPCKPLYKLCKGYEDSIDYICRCGL---SYKPGTKCVYSDFSYILLAYIL 165
Query: 58 ERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKG-----YDDQGKLLG 112
E+I G ++F+PL M+ T P ++ A + +K K +D+ G+ G
Sbjct: 166 EKIGGDTLDILCDRYIFKPLYMENTTFKPKGNNIAATEIDKKTKKPLIGVCHDENGRFFG 225
Query: 113 DTPFKLWMYPVGGAVGTLGDLQKFAQALL-ERKTLFHRPETWTELYSTTSTHPGTDIVRN 171
G + DL KF+ L+ E K + ++ + T+ H T + +
Sbjct: 226 GISGH------AGLFSDIYDLCKFSNMLVNEGKGII----SYASFKAMTTNH--TLGLED 273
Query: 172 AHGF-WA------SHYGVTLLGHSGNADGFS-SYLYLDLKNGIGQVILTNQLYEQVYNVQ 223
G+ W S G + +GF+ + L++D+KN I ++LTN+++ N++
Sbjct: 274 NRGYGWCIKGDKNSFMGDIAFPETFGHNGFTGTSLWVDIKNNIYAILLTNRVHPTRDNLR 333
Query: 224 M 224
+
Sbjct: 334 I 334
>gi|1741967|dbj|BAA13079.1| Alkaline D-peptidase [Bacillus cereus]
gi|16266765|dbj|BAB69971.1| alkaline D-peptidase [Bacillus cereus]
Length = 388
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 57/211 (27%), Positives = 93/211 (44%), Gaps = 26/211 (12%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
L+NH +G E K D D ++ +R + ++ F PG + SYSN L+
Sbjct: 152 LLNHTSGIAEYTRSKSFDLMDTKKSYRAEELVKMGISMPPDFAPGKSWSYSNTGYVLLGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTP 115
++E ++G YA+ + + EPLE+ T L N+ V K +GY +L G +
Sbjct: 212 LIETVTGNSYAEEIENRIIEPLELSNTF----LPGNSSVIPGTKHARGYI---QLDGASE 264
Query: 116 FKLWMY-------PVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDI 168
K Y G + T DL KF LL K L + + ++ +T T +
Sbjct: 265 PKDVTYYNPSMGSSAGDMISTADDLNKFFSYLLGGKLL--KEQQLKQMLTTVPTGEAA-L 321
Query: 169 VRNAHGFWASHY--GVTLLGHSGNADGFSSY 197
R G + + GV++ GH G+ GF ++
Sbjct: 322 GRYGLGIYETKLPNGVSIWGHGGSIPGFVTF 352
>gi|153952982|ref|YP_001393747.1| Predicted peptidoglycan biosynthesis protein [Clostridium kluyveri
DSM 555]
gi|146345863|gb|EDK32399.1| Predicted peptidoglycan biosynthesis protein [Clostridium kluyveri
DSM 555]
Length = 607
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 64/246 (26%), Positives = 108/246 (43%), Gaps = 52/246 (21%)
Query: 2 DLMNHQAG---------FDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTAL 52
+L+ H +G F M + D +++ F++ +P++ F+PG+ SYSN L
Sbjct: 271 ELLTHSSGIVNCTNLPEFWSMSIDSFNDINNVINLFKN-KPLE-FQPGSKFSYSNSGYIL 328
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLG 112
+ YIVE++SG Y DY+ +++F PL M T + GY+ K+
Sbjct: 329 LGYIVEKVSGINYIDYLEKNIFHPLNMKNTRV------------------GYNGMKKMYT 370
Query: 113 DTPFKLWM--------------YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYS 158
T + ++ Y G T GDL K+ +AL K + + T +++S
Sbjct: 371 STGYSGYLDVFPVSDMMTINGTYGAGNLCSTTGDLYKWDRALYTDKLI--KQSTLKDIFS 428
Query: 159 TTSTHPGTDIVRNAHGFWAS--HYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLY 216
+ I +G+ S +YG + H GN GF+S + + +ILTN Y
Sbjct: 429 NHIQITSSGIYY-GYGWMLSKENYGKKIY-HGGNTLGFTSNIARYPNRNLTIIILTNVGY 486
Query: 217 EQVYNV 222
YN+
Sbjct: 487 ---YNI 489
>gi|55378693|ref|YP_136543.1| hypothetical protein rrnAC1970 [Haloarcula marismortui ATCC 43049]
gi|55231418|gb|AAV46837.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 376
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 71/252 (28%), Positives = 109/252 (43%), Gaps = 39/252 (15%)
Query: 3 LMNHQAG-----FDEMPLYKK-GDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTA-LVSY 55
+++H AG FDE Y+ GD + D +P+ FEPGTT +Y + LV
Sbjct: 111 VLSHTAGLPFGEFDEQ--YESWGDWDAVVAAMEDIEPV--FEPGTTPAYHVINYGWLVGE 166
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAI--LPDLSDN-----AYVQEKRKED--KGYDD 106
++ R SGQ +YV EHVFEPL MD T I D SD+ Y +R D +G +D
Sbjct: 167 LIRRCSGQPVEEYVAEHVFEPLGMDHTGIGLRDDESDDVATLAGYEAFERCHDVEEGLED 226
Query: 107 QGKLLG---DTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTE--LYSTTS 161
G + P +GT D+ +F L +L + TE + T+
Sbjct: 227 PAAYAGAFNQEATHRAVIPAANGIGTARDMARFYACLANGGSL-DGTQLLTEATVDEATT 285
Query: 162 THPGTDI-------VRNAHGFWASHYGVTLLGHS------GNADGFSSYLYLDLKNGIGQ 208
TH T+ R G W + G + G+A SS+ + D + +G
Sbjct: 286 THAETESDGTLSRPARYGLGVWTGGLAADMFGAASKERMFGHAGLGSSFGWGDPELNVGF 345
Query: 209 VILTNQLYEQVY 220
++TN + ++ +
Sbjct: 346 ALVTNGIRDESF 357
>gi|38141536|emb|CAE53428.1| D-stereospecific endopeptidase [Bacillus cereus]
Length = 389
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 3 LMNHQAGFDEMPLYKKGDK-SDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVS 54
++NH +G E K+ D ++ ++ F + ++ F PG SYSN L+
Sbjct: 152 ILNHTSGIAEYSRSKEADFFNNTKKSFTAEELVKIGLSLPPDFAPGKGWSYSNTGYVLLG 211
Query: 55 YIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDT 114
++E+++G YA+ + + EPLE+ T L N+ V +GY +
Sbjct: 212 ILIEKVTGNSYAEEIENRIIEPLELSNTF----LPGNSSVIPGTNHARGYVQPDGAIELK 267
Query: 115 PFKLWMYPVGGAVG----TLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVR 170
+ +G + G T DL KF +LL K L + + ++ +T T +I R
Sbjct: 268 DITYYNPSIGSSAGDMISTADDLNKFFSSLLSGKLL--KEQQLKQMLTTVPTGIA-EIGR 324
Query: 171 NAHGFWASHY--GVTLLGHSGNADGFSSY 197
G + + GV++ GHSG GFS++
Sbjct: 325 YGLGIYETKLPNGVSIWGHSGGIPGFSTF 353
>gi|49487224|ref|YP_044445.1| hypothetical protein SAS2333 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|81648679|sp|Q6G6M9|FLP_STAAS Protein flp (FmtA-like protein)
gi|49245667|emb|CAG44146.1| putative exported protein [Staphylococcus aureus subsp. aureus
MSSA476]
Length = 498
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 20/189 (10%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L+ I++ ++ Q Y Y+ +H +PL+M T K
Sbjct: 183 KPGEEFEYSNMNYDLLGLIIQNVTKQSYTQYITDHWLKPLQMKHTTF-------KQTNYK 235
Query: 98 RKEDK-GYDDQGK--LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
K D GY+ QG ++ F LW P + + DL+ + + L + P+ +
Sbjct: 236 SKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQL------NPPDKYK 289
Query: 155 ELYSTTSTHPGTDIVR-NAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
L + + + I NA+ + W ++ L+ HSG D FSS++ L+ K G V+
Sbjct: 290 SLVQQSHKNLSSTIGEPNANAYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVV 349
Query: 211 LTNQLYEQV 219
L N E V
Sbjct: 350 LANLNSEYV 358
>gi|16801096|ref|NP_471364.1| hypothetical protein lin2030 [Listeria innocua Clip11262]
gi|16414531|emb|CAC97260.1| lin2030 [Listeria innocua]
Length = 335
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 22/227 (9%)
Query: 1 LDLMNHQAGFDE-MPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVER 59
L L+ H +G + +P YK G K D+ + Q PGT +Y++ + L+ Y++ +
Sbjct: 101 LHLLTHSSGLAQNIPNYKMGAKEDVRSYV--FATPQVNSPGTQVTYADANFLLLGYLISK 158
Query: 60 ISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDT-PFKL 118
G Y + +++ EPL+M T+ P +D + V + +G + GD FK
Sbjct: 159 FDGN-YEQSIQKNILEPLKMSHTSFHP--TDKSQVIPTELDQT----RGLIQGDVHDFKA 211
Query: 119 WMYPVG----GAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHG 174
W G G TL DL KF AL+ + E ++ T PG + R G
Sbjct: 212 WTAKSGTGHAGLFSTLADLSKFRDALILQNGDPILTEKTLQIMQINHT-PGLNRTR---G 267
Query: 175 FWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYN 221
G ++L H+G +++ LDL+N ++L+N+++ N
Sbjct: 268 LGWDLRGDSVLYHTGFT---GTFMALDLQNQASLIVLSNRVHPSRAN 311
>gi|87311341|ref|ZP_01093462.1| Serine-type D-Ala-D-Ala carboxypeptidase [Blastopirellula marina
DSM 3645]
gi|87285921|gb|EAQ77834.1| Serine-type D-Ala-D-Ala carboxypeptidase [Blastopirellula marina
DSM 3645]
Length = 366
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDN----- 91
F PGT YSN + ++ +V+R++G + +F PL+M RT +LP DN
Sbjct: 151 FPPGTEFFYSNTNYVMLGVLVQRLTGMTLEKAYEQRIFAPLKMTRT-LLPAREDNQMPPP 209
Query: 92 ---AYVQEKRKEDKGYDDQ------GKLLGDTPFKL---WMYPVGGAVGTLGDLQKFAQA 139
Y+ + +Q GKLL W + GGA+ T DL + +A
Sbjct: 210 FAHGYLFGTNQNSVLTPEQQQQALAGKLLPSDVTNANPSWSWAAGGAISTAKDLATYVEA 269
Query: 140 LLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLY 199
L+ + LF ++ S S P D +G + G +LGH G+ G+ +++
Sbjct: 270 LVGGQ-LFSPAMHKIQIESIQSNDP-DDPDSAGYGLGIAKMG-PMLGHDGSLPGYHTFMG 326
Query: 200 LDLKNGIGQVILTN 213
D K G+ ++LTN
Sbjct: 327 HDPKTGLTMIVLTN 340
>gi|42781358|ref|NP_978605.1| penicillin-binding protein, putative [Bacillus cereus ATCC 10987]
gi|42737280|gb|AAS41213.1| penicillin-binding protein, putative [Bacillus cereus ATCC 10987]
Length = 434
Score = 63.2 bits (152), Expect = 3e-08, Method: Composition-based stats.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 34/225 (15%)
Query: 3 LMNHQAG---FDEMPLY------KKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALV 53
L+ H +G F P Y K K D+ + Y P++ F+PG SY+N L+
Sbjct: 102 LLTHTSGISNFTSWPNYWSDIMRKSVSKEDIVHVLKTY-PLE-FKPGERYSYTNSGYILL 159
Query: 54 SYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGD 113
+ I+E+I+G Y +Y+H+++ +PL+M T E R+ + + GD
Sbjct: 160 TIIIEKITGLSYKEYIHKYICQPLQMHNTGC---------EDEGREIVESLSTGYTIFGD 210
Query: 114 --TPFKLWM-YPVG--GAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDI 168
P + M +P+G G T+ DL K+ +AL R+ + + ++++ S H G
Sbjct: 211 IKQPEHIDMSFPLGAYGMYSTVKDLFKWHKALRSREVI--SESSLQKMFTAYSDHYG--- 265
Query: 169 VRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
+G+ H G+ +GF +YL K+ + ++L+N
Sbjct: 266 ----YGWAIEQEEYISTSHFGDINGFVNYLIRYEKDNVCIIVLSN 306
>gi|21284094|ref|NP_647182.1| hypothetical protein MW2365 [Staphylococcus aureus subsp. aureus
MW2]
gi|81762030|sp|Q8NUZ4|FLP_STAAW Protein flp (FmtA-like protein)
gi|21205537|dbj|BAB96230.1| MW2365 [Staphylococcus aureus subsp. aureus MW2]
Length = 498
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 20/189 (10%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L+ I++ ++ Q Y Y+ +H +PL+M T K
Sbjct: 183 KPGEEFEYSNMNYDLLGLIIQNVTKQSYTQYITDHWLKPLQMKHTTF-------KQTNYK 235
Query: 98 RKEDK-GYDDQGK--LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
K D GY+ QG ++ F LW P + + DL+ + + L + P+ +
Sbjct: 236 SKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQL------NPPDKYK 289
Query: 155 ELYSTTSTHPGTDIVR-NAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
L + + + I NA+ + W ++ L+ HSG D FSS++ L+ K G V+
Sbjct: 290 SLVQQSHKNLSSTIGEPNANPYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVV 349
Query: 211 LTNQLYEQV 219
L N E V
Sbjct: 350 LANLNSEYV 358
>gi|47565623|ref|ZP_00236663.1| beta-lactamase [Bacillus cereus G9241]
gi|47557259|gb|EAL15587.1| beta-lactamase [Bacillus cereus G9241]
Length = 385
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G + K D +D+++ + + ++ F PG SYSN L+
Sbjct: 152 ILNHTSGIADYINSKDFDITDIKKSYTAEEFVKMGISLPPDFAPGKGWSYSNTGYVLLGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYD--DQGKLLGD 113
++E+++G YA+ V + EPL++ T L N+ V K +GY D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIIEPLDLSNTF----LPGNSSVIPGTKHARGYFQLDGASELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + +L +T P TD +
Sbjct: 268 VTYMNPGSSDGDIISTADDLNKFFSYLLSGKLLKEQ-----QLNQMLTTVP-TDREGAGY 321
Query: 174 GFWASHY----GVTLLGHSGNADGFSSYL 198
G + GV++ GH G+ GFS+++
Sbjct: 322 GLGIVEFKLPNGVSVWGHRGSVLGFSTFV 350
>gi|88712326|ref|ZP_01106413.1| beta-lactamase [Flavobacteriales bacterium HTCC2170]
gi|88709732|gb|EAR01965.1| beta-lactamase [Flavobacteriales bacterium HTCC2170]
Length = 426
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L + ++E +G + ++ H+ +PL M + D +
Sbjct: 221 QPGAHYEYSNCAATLAALVIEVATGTSFPEFTQTHILDPLGMTGSGWSFDAIN------- 273
Query: 98 RKEDKGYDDQGKLLGD--TPFKLW---MYPVGGAVGTLGDLQKFAQALLE----RKTLFH 148
+D L D TP L+ YP GG + DL K+ L++ + TL
Sbjct: 274 ------LEDHSVLYNDIQTPLPLYSLITYPDGGFTTSSADLAKYLNELMKGFTGKGTLL- 326
Query: 149 RPETWTELY------STTSTHPGTDIVRNAH--GFWASHYGVTLLGHSGNADGFSSYLYL 200
+ +++TEL+ S +T G + + H G + +GHSG G S++++
Sbjct: 327 QADSYTELFKKQLNPSHHNTEDGEEQSGDEHNSGIFMGFRANGQIGHSGGDPGVSTHMFF 386
Query: 201 DLKNGIGQVILTNQLYEQ 218
D K +G++++ N EQ
Sbjct: 387 DPKTKLGRILIVNTELEQ 404
>gi|14520356|ref|NP_125831.1| hypothetical beta-lactamase precursor (penicillin-binding protein)
[Pyrococcus abyssi GE5]
gi|5457571|emb|CAB49062.1| pbp related beta-lactamase precursor (EC 3.5.2.6)
(penicillin-binding protein) [Pyrococcus abyssi GE5]
Length = 447
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 20/195 (10%)
Query: 29 RDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDL 88
RD + +PG Y N L+ I+E++SG Y +Y+ + + EPL M+R+
Sbjct: 144 RDMEKWAVAKPGERFFYLNTGYVLLGKIIEKVSGVSYEEYIKKKILEPLGMNRS------ 197
Query: 89 SDNAYVQEKRKEDK----GY--DDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLE 142
+ +E+ ++DK GY D +G+L+ PF + GG + ++ DL K+ + +E
Sbjct: 198 ---YFFKEEVEKDKDVAMGYILDKEGRLV-PQPFPYGITADGGLLSSVLDLAKYLKMYIE 253
Query: 143 RKTLFHRPETWTELYSTTSTHPGTDIVRNAHGF----WASHYGVTLLGHSGNADGFSSYL 198
R E ++ ++ P +G+ + + G L+GHSG+ ++ Y+
Sbjct: 254 RDESIVSKEYIEKMETSYIKVPWEIFGGEGYGYGLIIYPNFLGEKLVGHSGSVGMYTGYI 313
Query: 199 YLDLKNGIGQVILTN 213
+ IG +L N
Sbjct: 314 GYIPEKKIGVAVLEN 328
>gi|23127421|ref|ZP_00109292.1| COG1680: Beta-lactamase class C and other penicillin binding
proteins [Nostoc punctiforme PCC 73102]
Length = 356
Score = 62.0 bits (149), Expect = 9e-08, Method: Composition-based stats.
Identities = 55/225 (24%), Positives = 106/225 (47%), Gaps = 23/225 (10%)
Query: 3 LMNHQAG---FDEMPLYKKGDKSDLEEQ----FRDYQPIQSFEPGTTTSYSNFSTALVSY 55
+++HQ+G + + P Y + +L + + P++ F+PG ++Y N L+
Sbjct: 109 ILSHQSGIPSYTDAPNYWEITHLNLSKSEILALVTHLPLK-FQPGEFSAYDNTGYYLLGL 167
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTP 115
I+E+++GQ Y D + E +F PL M+ T + N GY L + P
Sbjct: 168 ILEKVTGQSYGDLLQERIFTPLGMNATVM------NYPSDIVSHRAAGYRLLNSKLVNKP 221
Query: 116 F--KLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ Y GG + ++ D+ K+ QAL L + T ++++ + G D + +
Sbjct: 222 YYSPSVTYSAGGQLSSIEDMVKWEQALCSATLL--KQSTLDKMWTPRFPNQGDDWEKLRY 279
Query: 174 ----GFWASHYG-VTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
G+W +YG ++GH+G+ GF+S + + + I ++L N
Sbjct: 280 IAGLGWWVLNYGDRRVVGHNGSILGFASNITRFIDDKITVILLCN 324
>gi|148656757|ref|YP_001276962.1| beta-lactamase [Roseiflexus sp. RS-1]
gi|148568867|gb|ABQ91012.1| beta-lactamase [Roseiflexus sp. RS-1]
Length = 445
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 96/210 (45%), Gaps = 37/210 (17%)
Query: 23 DLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRT 82
+L ++FR + P+ +F PGT Y N + L+ I+ER SG YADY+H+ F PL M T
Sbjct: 242 ELVKRFRTF-PL-AFAPGTLYDYCNSNYVLLGLIIERASGMAYADYLHQRFFLPLGMTAT 299
Query: 83 AILPD---LSDNA--YVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFA 137
++D A YV RK G+ D L Y GG T+GDL ++
Sbjct: 300 GYDTSRGAIADGAQGYVVPGRKS--GFLDASTL----------YAAGGLYSTVGDLFRWD 347
Query: 138 QALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGF-WASHY--GVTLLGHSGNADGF 194
QAL + L + +++ T +R+ +GF W G + H GN G
Sbjct: 348 QALYTNEALAR--DQLDQMF--------TPALRD-YGFGWKIEVINGRRRISHPGNMTGV 396
Query: 195 SSYL--YLDLKNGIGQVILTNQLYEQVYNV 222
+++ Y D + I ++L N Y V +
Sbjct: 397 ATFFARYPDDRATI--IVLANMEYANVEGI 424
>gi|75764249|ref|ZP_00743801.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74488264|gb|EAO51928.1| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 432
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 27/211 (12%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G + K D +D+++ + + ++ F PG SYSN L+
Sbjct: 199 ILNHTSGIADYINSKDFDITDIKKSYTAEEFVKMGISLPPDFAPGKGWSYSNTGYVLLGI 258
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGD 113
++E+++G YA+ V + EPL++ +T L+ N+ V K +GY D L D
Sbjct: 259 LIEKVTGNSYAEEVENRIIEPLDLSKTF----LTGNSSVIPGTKHARGYLQLDGASDLKD 314
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T+ R
Sbjct: 315 VTYINPGSSDGDMISTADDLSKFFSYLLGGKLL--KEQQLKQMLTTVPTN------REGT 366
Query: 174 GFWAS------HYGVTLLGHSGNADGFSSYL 198
G+ GV++ GH G GFS+++
Sbjct: 367 GYGLGILEIKLPNGVSVWGHRGAVPGFSTFV 397
>gi|91791835|ref|YP_561486.1| beta-lactamase [Shewanella denitrificans OS217]
gi|91713837|gb|ABE53763.1| beta-lactamase [Shewanella denitrificans OS217]
Length = 616
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 59/248 (23%), Positives = 107/248 (43%), Gaps = 18/248 (7%)
Query: 2 DLMNHQAGF-----DEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYI 56
DL++H AGF E+ + K + L + YQ + PGT +YSNF + ++
Sbjct: 133 DLLSHTAGFRDAGVTELYVEKADASAPLSQVINKYQLQVRWRPGTRQAYSNFGYLIAGHL 192
Query: 57 VERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF 116
+E++SG+ + ++ + +PL+MD + + S V G G
Sbjct: 193 IEQLSGEPFEARLNHTILQPLKMDSS----NFSQQEEVLSTLVAGHGSALTGGKDKVPAM 248
Query: 117 KLWMYPVGGAVGTLGDLQKFAQALLERKTLFHR---PETWTELYSTTSTHPGTDIVRNAH 173
+ + P G V +L DL +F++ LL L + ++ T++ + + + A+
Sbjct: 249 PISVRPAGSLVTSLNDLTRFSRMLLNEGELDGARIISKASFDVMLTSAMDKNSGLHQAAY 308
Query: 174 G---FWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLY---EQVYNVQMPEL 227
G + S HSG DGF S + + + V L+N + QV+N +P L
Sbjct: 309 GLGLYPVSRESGRYFCHSGGIDGFLSNICFSKQQNMTFVALSNAMTLSGGQVFNKALPFL 368
Query: 228 IFGKMQTV 235
++ V
Sbjct: 369 AKAQLPEV 376
>gi|13507666|ref|NP_109642.1| lactamase, beta [Mus musculus]
gi|94385759|ref|XP_001004138.1| PREDICTED: similar to serine beta lactamase-like protein LACT-1
isoform 2 [Mus musculus]
gi|18202866|sp|Q9EP89|LACTB_MOUSE Serine beta-lactamase-like protein LACTB, mitochondrial precursor
gi|11545670|gb|AAG37910.1|AF317900_1 serine beta lactamase-like protein LACT-1 [Mus musculus]
gi|11545672|gb|AAG37911.1| serine beta lactamase-like protein LACT-1 [Mus musculus]
gi|148694192|gb|EDL26139.1| lactamase, beta [Mus musculus]
Length = 551
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 51/247 (20%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQ--PIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
F++ LY K + E R ++ P+ F+PG+ YS F L++ IVER SG KY D
Sbjct: 291 FEQGELYLKEKFENSIESLRLFKNDPL-FFKPGSQFLYSTFGYTLLAAIVERASGYKYLD 349
Query: 68 YVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF--KLWMYPVGG 125
Y+ + +F L+M T +N V R Y+ + +L+ +TP+ + + GG
Sbjct: 350 YMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKKRLV-NTPYVDNSYKWAGGG 403
Query: 126 AVGTLGDLQKFAQALLERKTL-------------FHRPETWTELYSTTSTHPGTDIVRNA 172
+ T+GDL KF A+L + + +PET +++ P T++ +
Sbjct: 404 FLSTVGDLLKFGNAMLYGYQVGQFKNSNENLLPGYLKPETMVMMWTPV---PNTEMSWDK 460
Query: 173 HGFWASHYGVT--------------LLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQ 218
G +A +GV H+G A G SS L ++L +L +
Sbjct: 461 EGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVL----------LVLPEELDSE 510
Query: 219 VYNVQMP 225
N ++P
Sbjct: 511 AVNNKVP 517
>gi|34864295|ref|XP_217181.2| PREDICTED: similar to lactamase, beta [Rattus norvegicus]
gi|109484992|ref|XP_001056675.1| PREDICTED: similar to lactamase, beta [Rattus norvegicus]
gi|149028907|gb|EDL84248.1| lactamase, beta (predicted) [Rattus norvegicus]
Length = 550
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 110/247 (44%), Gaps = 51/247 (20%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQ--PIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
F++ LY K + E R ++ P+ F+PG+ YS F L++ IVER SG KY D
Sbjct: 290 FEQGELYLKEKFENSIESLRLFKNDPL-FFKPGSQFLYSTFGYTLLAAIVERTSGYKYLD 348
Query: 68 YVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF--KLWMYPVGG 125
Y+ + +F L+M T +N V R Y+ + +L+ +TP+ + + GG
Sbjct: 349 YMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKKRLV-NTPYVDNSYKWAGGG 402
Query: 126 AVGTLGDLQKFAQALL--ERKTLFH-----------RPETWTELYSTTSTHPGTDIVRNA 172
+ T+GDL KF A+L + LF +PET +++ P T++ +
Sbjct: 403 FLSTVGDLLKFGNAMLYGYQVGLFKNSNENLLPGYLKPETMVMMWTPV---PNTEMSWDK 459
Query: 173 HGFWASHYGVT--------------LLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQ 218
G +A +GV H+G A G SS L ++L +L +
Sbjct: 460 EGKYAMAWGVVEKKQTHGACRKQRHYASHTGGAVGASSVL----------LVLPEELDPE 509
Query: 219 VYNVQMP 225
N ++P
Sbjct: 510 AVNNKVP 516
>gi|91215824|ref|ZP_01252793.1| penicillin-binding protein 4 [Psychroflexus torquis ATCC 700755]
gi|91185801|gb|EAS72175.1| penicillin-binding protein 4 [Psychroflexus torquis ATCC 700755]
Length = 422
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 53/209 (25%), Positives = 94/209 (44%), Gaps = 12/209 (5%)
Query: 25 EEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAI 84
+ ++ D I +EPG+ YS ++ ++E ISGQ + +Y+ + VFEPL+M+ +
Sbjct: 174 DSEYSDGVAIVGYEPGSKYMYSGAGYTILQLLIEEISGQSFQEYMTQEVFEPLKMENSTF 233
Query: 85 LPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERK 144
+ L+D VQ + Y D G P K + DL KF +A +
Sbjct: 234 V--LTDKPNVQLAQI----YKDNGTT--RQPNKFTALAAASLFTSTADLSKFLEANVSNN 285
Query: 145 TLFHRPETWTELYSTTSTHPGTDIV-RNAHGFWASHYGVTLLGHSGNA-DGFSSYLYLDL 202
+ + ET TE+ + D+ +H + + ++GH G+ + ++ +DL
Sbjct: 286 PVLSK-ETITEMSKPETFINDIDVYGLGSHLYSQNDQNSNIIGHDGSGNNAINTAARIDL 344
Query: 203 KNGIGQVILTNQLYEQVYNVQMPELIFGK 231
K+ G +IL Y ++ E IF K
Sbjct: 345 KSKNGIIILETGNYNIASSIA-DEWIFWK 372
>gi|28374178|gb|AAH46293.1| Lactb protein [Mus musculus]
Length = 551
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 51/247 (20%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQ--PIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
F++ LY K + E R ++ P+ F+PG+ YS F L++ IVER SG KY D
Sbjct: 291 FEQGELYLKEKFENSIESLRLFKNDPL-FFKPGSQFLYSTFGYTLLAAIVERASGYKYLD 349
Query: 68 YVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF--KLWMYPVGG 125
Y+ + +F L+M T +N V R Y+ + +L+ +TP+ + + GG
Sbjct: 350 YMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKKRLV-NTPYVDNSYKWAGGG 403
Query: 126 AVGTLGDLQKFAQALLERKTL-------------FHRPETWTELYSTTSTHPGTDIVRNA 172
+ T+GDL KF A+L + + +PET +++ P T++ +
Sbjct: 404 FLSTVGDLLKFGNAMLYGYQVGQFKNSNENLLPGYLKPETMVMMWTPV---PNTEMSWDK 460
Query: 173 HGFWASHYGVT--------------LLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQ 218
G +A +GV H+G A G SS L ++L +L +
Sbjct: 461 EGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVL----------LVLPEELDSE 510
Query: 219 VYNVQMP 225
N ++P
Sbjct: 511 AVNNKVP 517
>gi|71895675|ref|NP_001025717.1| lactamase, beta [Gallus gallus]
gi|53132734|emb|CAG31931.1| hypothetical protein [Gallus gallus]
Length = 520
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 38/193 (19%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F+PG+ YS + L+S +VER+SGQK+ DY+ + +F L+M T L DN +
Sbjct: 276 FKPGSQFLYSTYGFTLLSAVVERVSGQKFTDYMLK-MFRDLDMLSTV----LDDNEAMIY 330
Query: 97 KRKEDKGYDDQGKLLGDTPF--KLWMYPVGGAVGTLGDLQKFAQALL-----------ER 143
R Y+ +G+L+ + P+ + + GG + ++GDL KF ALL +
Sbjct: 331 NRARCYVYNKKGRLV-NAPYVDNSYKWAGGGFLSSVGDLLKFGNALLYSYQAGQFRNTDG 389
Query: 144 KTL--FHRPETWTELYSTTSTHPGTDIVRNAHGFWASHYGVT--------------LLGH 187
K L + +P+T +++ P T++ + G +A + V H
Sbjct: 390 KLLPGYLKPDTVAMMWTPV---PKTEVSWDRDGKYAMAWAVVEKKQQCGFCRQQRHYASH 446
Query: 188 SGNADGFSSYLYL 200
+G A G SS L +
Sbjct: 447 TGGAVGASSVLLI 459
>gi|74000843|ref|XP_544713.2| PREDICTED: similar to lactamase, beta [Canis familiaris]
Length = 464
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 51/247 (20%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQ--PIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
F++ LY K + E R ++ P+ F+PG+ YS F L++ IVER SG KY D
Sbjct: 202 FEQGELYLKEKFENSIESLRLFKNDPL-FFKPGSQFLYSTFGYTLLAAIVERASGYKYLD 260
Query: 68 YVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF--KLWMYPVGG 125
Y+ + +F L+M T +N V R Y+ + +L+ +TP+ + + GG
Sbjct: 261 YMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKRRLV-NTPYVDNSYKWAGGG 314
Query: 126 AVGTLGDLQKFAQALL----------ERKTL---FHRPETWTELYSTTSTHPGTDIVRNA 172
+ T+GDL KF A+L + L + +PET +++ P T++ +
Sbjct: 315 FLSTVGDLLKFGNAMLYGYQVGLFKNSHENLLPGYLKPETMVMIWTPV---PNTEMSWDK 371
Query: 173 HGFWASHYGVT--------------LLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQ 218
G +A +GV H+G A G SS L ++L +L +
Sbjct: 372 EGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVL----------LVLPEELDVE 421
Query: 219 VYNVQMP 225
V N ++P
Sbjct: 422 VINNKVP 428
>gi|118572765|sp|P83095|LACTB_BOVIN Serine beta-lactamase-like protein LACTB, mitochondrial precursor
Length = 556
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 71/264 (26%), Positives = 113/264 (42%), Gaps = 64/264 (24%)
Query: 5 NHQAGFDEMPLYKKGDKSD----LEEQFRDYQPIQS----------FEPGTTTSYSNFST 50
N G + P KK D L+E+F + I+S F+PG+ YS F
Sbjct: 278 NETKGRNSKPCKKKNDFEQGELYLKEKFEN--SIESLRLFKNDPLFFKPGSQFLYSTFGY 335
Query: 51 ALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKL 110
L++ IVER SG KY DY+ + +F L+M T +N V R Y+ + +L
Sbjct: 336 TLLAAIVERASGYKYLDYMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKKRL 390
Query: 111 LGDTPF--KLWMYPVGGAVGTLGDLQKFAQALL--ERKTLFH-----------RPETWTE 155
+ +TP+ + + GG + T+GDL KF A+L + LF +PET
Sbjct: 391 V-NTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNANENLLPGYLKPETMLM 449
Query: 156 LYSTTSTHPGTDIVRNAHGFWASHYGVT--------------LLGHSGNADGFSSYLYLD 201
+++ P T++ + G +A +GV H+G A G SS L
Sbjct: 450 IWTPV---PNTEMSWDKEGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVL--- 503
Query: 202 LKNGIGQVILTNQLYEQVYNVQMP 225
++L +L + N ++P
Sbjct: 504 -------LVLPEELDAEALNNKVP 520
>gi|149773574|ref|NP_001092603.1| hypothetical protein LOC614196 [Bos taurus]
gi|148744134|gb|AAI42001.1| LOC614196 protein [Bos taurus]
Length = 556
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 71/264 (26%), Positives = 113/264 (42%), Gaps = 64/264 (24%)
Query: 5 NHQAGFDEMPLYKKGDKSD----LEEQFRDYQPIQS----------FEPGTTTSYSNFST 50
N G + P KK D L+E+F + I+S F+PG+ YS F
Sbjct: 278 NETKGRNSKPCKKKNDFEQGELYLKEKFEN--SIESLRLFKNDPLFFKPGSQFLYSTFGY 335
Query: 51 ALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKL 110
L++ IVER SG KY DY+ + +F L+M T +N V R Y+ + +L
Sbjct: 336 TLLAAIVERASGYKYLDYMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKKRL 390
Query: 111 LGDTPF--KLWMYPVGGAVGTLGDLQKFAQALL--ERKTLFH-----------RPETWTE 155
+ +TP+ + + GG + T+GDL KF A+L + LF +PET
Sbjct: 391 V-NTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNANENLLPGYLKPETMLM 449
Query: 156 LYSTTSTHPGTDIVRNAHGFWASHYGVT--------------LLGHSGNADGFSSYLYLD 201
+++ P T++ + G +A +GV H+G A G SS L
Sbjct: 450 IWTPV---PNTEMSWDKEGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVL--- 503
Query: 202 LKNGIGQVILTNQLYEQVYNVQMP 225
++L +L + N ++P
Sbjct: 504 -------LVLPEELDAEALNNKVP 520
>gi|153890346|ref|ZP_02011431.1| beta-lactamase [Opitutaceae bacterium TAV2]
gi|151583596|gb|EDN47064.1| beta-lactamase [Opitutaceae bacterium TAV2]
Length = 447
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 30/232 (12%)
Query: 2 DLMNHQAGFDEMPLYKKG--DKSDLEEQFRDYQPIQS-FEPGTTTSYSNFSTALVSYIVE 58
++++H +G L + D+ L E R Y FEPG+ YSN + I+E
Sbjct: 186 EILSHTSGLPYATLAETPALDRYPLAEAVRSYAHEHLLFEPGSNFLYSNEGINIAGRIIE 245
Query: 59 RISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE--------KRKEDKGYDDQGKL 110
+S + Y D++ + +F PL M+ T PD S A + E++
Sbjct: 246 LLSSRSYEDFMQQRLFSPLGMNDTTFWPDASQLARLASIYGIAPPPSPLEEQTVVQLSHP 305
Query: 111 LGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTL----FHRPETWTELYS-TTSTHPG 165
L D + + P GG T D+ KF + LL L + R +T T + S H
Sbjct: 306 LNDRA-RRYPVPAGGLFSTATDIAKFGRMLLRGGELDGHRYLRRKTITLMASRQIPAH-- 362
Query: 166 TDIVRNAHGFWASHYGVTLLGHS---GNADGFSSYLYLDLKNGIGQVILTNQ 214
V NA+G G L H+ G+ + L +D+KNGI + L ++
Sbjct: 363 ---VDNAYGL-----GTKLFSHNNVFGHNGATGANLSIDVKNGIVTIYLMHR 406
>gi|52142382|ref|YP_084447.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
gi|51975851|gb|AAU17401.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L]
Length = 385
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 54/211 (25%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G + K D +D+++ + + ++ F PG SYSN L+
Sbjct: 152 ILNHTSGIADYINSKDFDITDIKKSYTAEEFVKMGISLPPDFAPGKAWSYSNTGYVLLGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGD 113
++E+++G YA+ V + EPL++ T L N+ V K +GY D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIIEPLDLSNTF----LPGNSSVIPGTKHARGYLQLDGASELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T R
Sbjct: 268 VTYINPGSSDGDMISTADDLNKFFSYLLGGKLL--KEQQLKQMLTTVPTE------REGT 319
Query: 174 GFWAS------HYGVTLLGHSGNADGFSSYL 198
G+ GV++ GH G GFS+++
Sbjct: 320 GYGLGILEIKLPNGVSVWGHRGAVPGFSTFV 350
>gi|119774488|ref|YP_927228.1| beta-lactamase class C-like protein [Shewanella amazonensis SB2B]
gi|119766988|gb|ABL99558.1| beta-lactamase class C-like protein [Shewanella amazonensis SB2B]
Length = 384
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 46/239 (19%)
Query: 3 LMNHQAGFDEMPLYKKG----DKSDLEEQFRDYQ-------PIQSFEPGTTTSYSNFSTA 51
L++H++G +P Y K D +E + + Q I FEPG+ SYSNF+ A
Sbjct: 129 LLSHRSG---LPNYPKNVTRIDGDPMEGGYSEAQLLIALKSTILDFEPGSKFSYSNFNYA 185
Query: 52 LVSYIVERISGQKYADYVHEH---------VFEPLEMDRTAILPDLSDNAYVQEKRKEDK 102
L+ YI+ + +G+ Y ++E+ V+ L+ DR++++ V RK++
Sbjct: 186 LIGYILSKKTGKTYETLINEYLRKRLGITEVYSQLQADRSSVV--------VTPYRKDN- 236
Query: 103 GYDDQGKLLGDTPFKL-WMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTS 161
+L+ P+++ + P GG + L K + + +F + + L ST +
Sbjct: 237 ------RLIKTKPWEMGLLTPHGGLYASNHALLKLMEQQISAYQVFFKNRQASPLVSTQT 290
Query: 162 THPGTDIVRNAHGFWASH-------YGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
++ ++GF Y T+L H G+ DGF S + +G V+LT+
Sbjct: 291 SYATGLYPGLSYGFGMFEATAELGLYPETVLWHGGDLDGFGSEYIFSPSSKVGIVLLTS 349
>gi|89206593|ref|ZP_01185149.1| Beta-lactamase [Bacillus weihenstephanensis KBAB4]
gi|89155474|gb|EAR75486.1| Beta-lactamase [Bacillus weihenstephanensis KBAB4]
Length = 375
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F GT Y++++ +++YIVE+IS + A+YV E++F P+EM+ + + L ++ ++ E
Sbjct: 190 FPAGTGWKYTDYNYMVLAYIVEKISNKPLAEYVKENIFTPVEMNESGMGATLPEDIFLAE 249
Query: 97 KRKEDKGYDDQGKLLGDTP-FKL-WMYPVGGAVGTLGDLQKFAQALLERKTL 146
GY + L TP K+ W+Y G T+ D+++ +A+++ K +
Sbjct: 250 ------GYTKKDNELIATPRLKMNWLYGCGEMYTTVEDMKRLDEAIMDGKLI 295
>gi|149176975|ref|ZP_01855584.1| Uncharacterised conserved protein UCP016719 [Planctomyces maris DSM
8797]
gi|148844230|gb|EDL58584.1| Uncharacterised conserved protein UCP016719 [Planctomyces maris DSM
8797]
Length = 781
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 16/160 (10%)
Query: 3 LMNHQAGF---DEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVER 59
L+ HQ G + + Y+ G + L+ R Y +EPGT +Y++ L+ IV+R
Sbjct: 147 LLTHQGGLIPDNSIKDYQDGPEKALQ---RIYDLKLYYEPGTRFAYTDVGFILLGDIVKR 203
Query: 60 ISGQKYADYVHEHVFEPLEMDRTAILP--DLSDNAYVQEKRKEDKGYDDQGKLLGDTPFK 117
++GQ +Y +H+++PL M T LP +L A ++R +G QG++ +K
Sbjct: 204 VTGQSVHEYSQKHIYQPLGMTETGYLPAAELRQRAATTQQR---EGRWMQGEVHDPRAYK 260
Query: 118 L-WMYPVGGAVGTLGDLQKFAQALLER----KTLFHRPET 152
L + G T DL +AQALL + K +PET
Sbjct: 261 LDGVAGHAGLFSTAEDLAIYAQALLNQGRSGKKQVLKPET 300
>gi|30021593|ref|NP_833224.1| Penicillin-binding protein [Bacillus cereus ATCC 14579]
gi|29897148|gb|AAP10425.1| Penicillin-binding protein [Bacillus cereus ATCC 14579]
Length = 375
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F GT Y++++ +++YIVE+IS + A+YV E++ P+EM+ + + L ++ ++ E
Sbjct: 190 FPAGTGWKYTDYNYMVLAYIVEKISNKPLAEYVKENILTPVEMNESGMGATLPEDIFLAE 249
Query: 97 KRKEDKGYDDQGKLLGDTP-FKL-WMYPVGGAVGTLGDLQKFAQALLERKTL 146
GY + L TP K+ W+Y G T+ D++K +A+++ K L
Sbjct: 250 ------GYTKKDNKLIATPRLKMNWLYGCGEMYTTVEDMKKLDEAIMDGKLL 295
>gi|109081423|ref|XP_001104610.1| PREDICTED: similar to lactamase, beta isoform a isoform 2 [Macaca
mulatta]
Length = 547
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 48/218 (22%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F+PG+ YS F L++ IVER SG KY DY+ + +F+ L+M T +N V
Sbjct: 315 FKPGSQFLYSTFGYTLLAAIVERASGYKYLDYMQK-IFQDLDMLTTV----QEENEPVIY 369
Query: 97 KRKEDKGYDDQGKLLGDTPF--KLWMYPVGGAVGTLGDLQKFAQALLERKTL-------- 146
R Y+ + +L+ +TP+ + + GG + T+GDL KF A+L +
Sbjct: 370 NRARFYVYNKKKRLV-NTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNSNE 428
Query: 147 -----FHRPETWTELYSTTSTHPGTDIVRNAHGFWASHYGVT--------------LLGH 187
+ +PET +++ P T++ + G +A +GV H
Sbjct: 429 NLLPGYLKPETMVMMWTPV---PNTEMSWDKEGKYAMAWGVVEKKQTYGSCRKQRHYASH 485
Query: 188 SGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMP 225
+G A G SS L ++L +L + N ++P
Sbjct: 486 TGGAVGASSVL----------LVLPEELDTETINNKVP 513
>gi|49477584|ref|YP_036382.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|49329140|gb|AAT59786.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus thuringiensis serovar konkukian str. 97-27]
Length = 385
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G + K D +D+++ + + ++ F PG SYSN ++
Sbjct: 152 ILNHTSGIADYINSKDFDITDIKKSYTAEEFVKMGISLPPDFAPGKGWSYSNTGYVILGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGD 113
++E+++G YA+ V + EPL++ T L N+ V K +GY D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIIEPLDLSNTF----LPGNSSVIPGTKHARGYLQRDGASELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T R
Sbjct: 268 VTYMNPGSSDGDMISTADDLNKFFSYLLGGKLL--KEQQLKQMLTTVPTE------REGT 319
Query: 174 GFWAS------HYGVTLLGHSGNADGFSSYL 198
G+ G+++ GH G GFS+++
Sbjct: 320 GYGLGILEIKLPNGISVWGHRGGVPGFSTFV 350
>gi|119598044|gb|EAW77638.1| lactamase, beta, isoform CRA_b [Homo sapiens]
Length = 547
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 51/247 (20%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQ--PIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
F++ LY + + E R ++ P+ F+PG+ YS F L++ IVER SG KY D
Sbjct: 287 FEQGELYLREKFENSIESLRLFKNDPL-FFKPGSQFLYSTFGYTLLAAIVERASGCKYLD 345
Query: 68 YVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF--KLWMYPVGG 125
Y+ + +F L+M T +N V R Y+ + +L+ +TP+ + + GG
Sbjct: 346 YMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKKRLV-NTPYVDNSYKWAGGG 399
Query: 126 AVGTLGDLQKFAQALL--ERKTLFH-----------RPETWTELYSTTSTHPGTDIVRNA 172
+ T+GDL KF A+L + LF +PET +++ P T++ +
Sbjct: 400 FLSTVGDLLKFGNAMLYGYQVGLFKNSNENLLPGYLKPETMVMMWTPV---PNTEMSWDK 456
Query: 173 HGFWASHYGVT--------------LLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQ 218
G +A +GV H+G A G SS L ++L +L +
Sbjct: 457 EGKYAMAWGVVEKKQTYGSCRKQRHYASHTGGAVGASSVL----------LVLPEELDTE 506
Query: 219 VYNVQMP 225
N ++P
Sbjct: 507 TINNKVP 513
>gi|52143219|ref|YP_083610.1| penicillin-binding protein [Bacillus cereus E33L]
gi|51976688|gb|AAU18238.1| penicillin-binding protein [Bacillus cereus E33L]
Length = 485
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 28/192 (14%)
Query: 41 TTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKE 100
T+ Y+N A +SYIVE I+ Q + Y EH+ EPL M T + + + +
Sbjct: 152 TSFLYNNLMYATISYIVENITNQTWEQYATEHILEPLNMSHTNF-------SVIDSQTTD 204
Query: 101 DKG--YDDQGKLLGDTPFKLWMYPVGGAVG----TLGDLQKFAQALLERKTL----FHRP 150
D Y + + + PF+ GA G T+ D+ + L++ P
Sbjct: 205 DYALPYIENDGEIKEVPFR--NIDTVGAAGCINSTIKDMANWVLLHLKQGKFGEYKLISP 262
Query: 151 ETWTELYSTTSTHPGTDIVR------NAHG---FWASHYGVTLLGHSGNADGFSSYLYLD 201
E ++Y+ ++ P ++ N++G F +++ G ++ H GN DGFS+ +
Sbjct: 263 ELLQQMYTPHNSIPDQPVLSLPESPLNSYGLGWFISAYRGNKVIHHGGNIDGFSALVSFI 322
Query: 202 LKNGIGQVILTN 213
IG VILTN
Sbjct: 323 PTENIGLVILTN 334
>gi|26051231|ref|NP_116246.2| lactamase, beta isoform a [Homo sapiens]
gi|46397478|sp|P83111|LACTB_HUMAN Serine beta-lactamase-like protein LACTB, mitochondrial precursor
gi|45501256|gb|AAH67288.1| Lactamase, beta [Homo sapiens]
Length = 547
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 51/247 (20%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQ--PIQSFEPGTTTSYSNFSTALVSYIVERISGQKYAD 67
F++ LY + + E R ++ P+ F+PG+ YS F L++ IVER SG KY D
Sbjct: 287 FEQGELYLREKFENSIESLRLFKNDPL-FFKPGSQFLYSTFGYTLLAAIVERASGCKYLD 345
Query: 68 YVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPF--KLWMYPVGG 125
Y+ + +F L+M T +N V R Y+ + +L+ +TP+ + + GG
Sbjct: 346 YMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKKRLV-NTPYVDNSYKWAGGG 399
Query: 126 AVGTLGDLQKFAQALL--ERKTLFH-----------RPETWTELYSTTSTHPGTDIVRNA 172
+ T+GDL KF A+L + LF +PET +++ P T++ +
Sbjct: 400 FLSTVGDLLKFGNAMLYGYQVGLFKNSNENLLPGYLKPETMVMMWTPV---PNTEMSWDK 456
Query: 173 HGFWASHYGVT--------------LLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQ 218
G +A +GV H+G A G SS L ++L +L +
Sbjct: 457 EGKYAMAWGVVERKQTYGSCRKQRHYASHTGGAVGASSVL----------LVLPEELDTE 506
Query: 219 VYNVQMP 225
N ++P
Sbjct: 507 TINNKVP 513
>gi|75764506|ref|ZP_00743983.1| Beta-lactamase family protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74488003|gb|EAO51742.1| Beta-lactamase family protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 333
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F GT Y++++ +++YIVE+IS + A+YV E++ P+EM + + L ++ ++ E
Sbjct: 190 FPAGTGWKYTDYNYMVLAYIVEKISNKPLAEYVKENILTPVEMHESGMGATLPEDIFLAE 249
Query: 97 KRKEDKGYDDQGKLLGDTP-FKL-WMYPVGGAVGTLGDLQKFAQALLERKTL 146
GY + L TP K+ W+Y G T+ D++K +A+++ K L
Sbjct: 250 ------GYTKKDNKLIATPRLKMNWLYGCGEMYTTVEDMKKLDEAIMDGKLL 295
>gi|23100815|ref|NP_694282.1| hypothetical protein OB3360 [Oceanobacillus iheyensis HTE831]
gi|22779049|dbj|BAC15316.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 453
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 53/184 (28%), Positives = 76/184 (41%), Gaps = 18/184 (9%)
Query: 39 PGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNA----YV 94
PG + SYSN AL+ I+ER+SGQ YA Y+ ++F+PL M + P+ +N Y
Sbjct: 166 PGRSFSYSNDGYALLGIIIERVSGQSYAHYIEANIFQPLGMKSSFFDPERLNNRATSLYS 225
Query: 95 QEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
E + D P M+ G T D+ +F L PE+
Sbjct: 226 VNPLAETPAVEHSPGWW-DAPA---MWAAGYVKSTAADMLRFGDVFLNEGNGILTPESLD 281
Query: 155 ELYST-TSTHPGT----DIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQV 209
+L S PG ++ N F G TL+ H G G S+ + + I V
Sbjct: 282 DLTSQHIEVEPGLYYGYGVIINPDFF-----GTTLIEHGGGIKGVSAQFSVLPEKDIVGV 336
Query: 210 ILTN 213
LTN
Sbjct: 337 CLTN 340
>gi|37524188|ref|NP_927532.1| hypothetical protein plu0166 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783611|emb|CAE12461.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 531
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 66/249 (26%), Positives = 103/249 (41%), Gaps = 49/249 (19%)
Query: 3 LMNHQAGF-DEMPLYKKGDKS--------DLEEQFRDYQPIQSFEPGTTTSYSNFSTALV 53
L++H +G DE LY+ K+ DL + Q +F P +YSN L+
Sbjct: 114 LIHHTSGLRDESLLYRLAGKNSRFDYHDIDLIRKLTQRQRTLNFTPSEYYAYSNTGYYLL 173
Query: 54 SYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSD--------NAYVQEKRKEDKGYD 105
+ IV +SG+ +Y E++F PL+M T D+++ Y +E + + YD
Sbjct: 174 AEIVSVVSGKSLREYTEENIFAPLKMKDTTFYDDVTEIIFDRAMGYTYSKEPNRWAR-YD 232
Query: 106 DQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPG 165
G ++G T G T+ DL ++ +A F+ P EL S P
Sbjct: 233 LNGSVVGGT----------GLYSTVNDLCRWIRA-------FYSPSIVQELLPQLSRTP- 274
Query: 166 TDIVRNAHGFWA------SHYGVTLLGHSGNADGFSSYLYL--DLKNGIGQVILTN---- 213
D+ H +A G ++ H G+ GF S + + D K GI TN
Sbjct: 275 -DLTNGNHNNYAYGLIISQREGQKIIQHDGSYAGFKSDVCILPDAKLGIAITSATNINVI 333
Query: 214 QLYEQVYNV 222
Q EQ +V
Sbjct: 334 QWIEQCLDV 342
>gi|118477698|ref|YP_894849.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus thuringiensis str. Al Hakam]
gi|118416923|gb|ABK85342.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus thuringiensis str. Al Hakam]
Length = 385
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G + K D +D+++ + + ++ F PG SYSN ++
Sbjct: 152 ILNHTSGIADYINSKDFDITDIKKSYTAEEFVKMGISLPPDFAPGKGWSYSNTGYVILGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGD 113
++E+++G YA+ V + EPL++ T L N+ V K +GY D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIIEPLDLSNTF----LPGNSSVIPGTKHARGYLQRDGASELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T R
Sbjct: 268 VTYINPGSSDGDMISTADDLNKFFSYLLGGKLL--KEQQLKQMLTTVPTE------REGT 319
Query: 174 GFWAS------HYGVTLLGHSGNADGFSSYL 198
G+ G+++ GH G GFS+++
Sbjct: 320 GYGLGILEIKLPNGISVWGHRGGVPGFSTFV 350
>gi|88806500|ref|ZP_01122017.1| hypothetical protein RB2501_00471 [Robiginitalea biformata
HTCC2501]
gi|88783332|gb|EAR14504.1| hypothetical protein RB2501_00471 [Robiginitalea biformata
HTCC2501]
Length = 453
Score = 59.7 bits (143), Expect = 4e-07, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 67/135 (49%), Gaps = 17/135 (12%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTA-ILPDLSDNAYVQ 95
F+PG+ Y S + +++VERISGQ Y YV EHV +PL M+ T +P+ + +
Sbjct: 224 FQPGSQWEYGP-SVDVQAFLVERISGQPYGAYVREHVLDPLGMEETRYFVPESDRDRFSA 282
Query: 96 EKRKEDKGYDDQGKLLGDTPFKL-----WMYPVG--GAVGTLGDLQKFAQALLERKTLFH 148
R+ED D L D+ K+ W G G TL D +FA+ LL + L
Sbjct: 283 MYRRED---DSTLTQLPDSTAKIEYLQRWPLTRGGWGLTSTLDDYMRFARMLLNKGVLEG 339
Query: 149 R----PETWTELYST 159
R PET EL +T
Sbjct: 340 RAVLEPET-VELMAT 353
>gi|15925431|ref|NP_372965.1| fmtA-like protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15928020|ref|NP_375553.1| hypothetical protein SA2230 [Staphylococcus aureus subsp. aureus
N315]
gi|148268878|ref|YP_001247821.1| beta-lactamase [Staphylococcus aureus subsp. aureus JH9]
gi|150394952|ref|YP_001317627.1| beta-lactamase [Staphylococcus aureus subsp. aureus JH1]
gi|156980756|ref|YP_001443015.1| hypothetical protein SAHV_2425 [Staphylococcus aureus subsp. aureus
Mu3]
gi|81705105|sp|Q7A3Q5|FLP_STAAN Protein flp (FmtA-like protein)
gi|81780959|sp|Q99RJ0|FLP_STAAM Protein flp (FmtA-like protein)
gi|13702391|dbj|BAB43532.1| SA2230 [Staphylococcus aureus subsp. aureus N315]
gi|14248215|dbj|BAB58603.1| fmtA-like protein [Staphylococcus aureus subsp. aureus Mu50]
gi|147741947|gb|ABQ50245.1| beta-lactamase [Staphylococcus aureus subsp. aureus JH9]
gi|149947404|gb|ABR53340.1| beta-lactamase [Staphylococcus aureus subsp. aureus JH1]
gi|156722891|dbj|BAF79308.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
Length = 498
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L+ I++ ++ Q Y Y+ +PL M T+ K
Sbjct: 183 KPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSF-------KQTNNK 235
Query: 98 RKEDK-GYDDQGK--LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
K D GY+ QG ++ F LW P + + DL+ + + L + P+ +
Sbjct: 236 SKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQL------NPPDKYK 289
Query: 155 ELYSTTSTHPGTDIVR-NAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
L + + + I NA+ + W ++ L+ HSG D FSS++ L+ K G V+
Sbjct: 290 SLVQQSHKNLSSTIGEPNANAYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVV 349
Query: 211 LTNQLYEQV 219
L N E V
Sbjct: 350 LANLNSEYV 358
>gi|82752037|ref|YP_417778.1| probable drug resistance-involved membrane protein [Staphylococcus
aureus RF122]
gi|82657568|emb|CAI82012.1| probable drug resistance-involved membrane protein [Staphylococcus
aureus RF122]
Length = 499
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L+ I++ ++ Q Y Y+ +PL M T+ K
Sbjct: 183 KPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSF-------KQTNNK 235
Query: 98 RKEDK-GYDDQGK--LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
K D GY+ QG ++ F LW P + + DL+ + + L + P+ +
Sbjct: 236 SKNDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQL------NPPDKYK 289
Query: 155 ELYSTTSTHPGTDIVR-NAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
L + + + I NA+ + W ++ L+ HSG D FSS++ L+ K G V+
Sbjct: 290 SLVQQSHKNLSSTIGEPNANAYASGWFTNNDERLVFHSGTLDNFSSFILLNPKQNYGIVV 349
Query: 211 LTNQLYEQV 219
L N E V
Sbjct: 350 LANLNSEYV 358
>gi|94969642|ref|YP_591690.1| Uncharacterised conserved protein UCP016719 [Acidobacteria
bacterium Ellin345]
gi|94551692|gb|ABF41616.1| Uncharacterised conserved protein UCP016719 [Acidobacteria
bacterium Ellin345]
Length = 793
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 20/234 (8%)
Query: 2 DLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQSFEP-GTTTSYSNFSTALVSYIVERI 60
DLM H +G + L K S L+E ++ + P G+ YS+ + ++ +V+++
Sbjct: 136 DLMTHYSGL-QPDLELKPYWSGLDEGYKRANAEKPTSPAGSVFRYSDINFIVLGEMVQKL 194
Query: 61 SGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDT---PFK 117
SG+ Y E +FEPL MD T LP S + +++ G++L T P
Sbjct: 195 SGEPLERYAKERIFEPLGMDHTQYLPPASWRDKIAPTEVDER----TGQMLRGTVHDPTS 250
Query: 118 LWMYPVGGAVG---TLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHG 174
M V G G T D+ KFAQA+L+ P T ++ TT P G
Sbjct: 251 RMMGGVAGHAGLFSTADDVAKFAQAILDNDGRIWSPLTVEKM--TTPQQPQGQPWLRGLG 308
Query: 175 F-----WASHYGVTLLGHSGNADGFS-SYLYLDLKNGIGQVILTNQLYEQVYNV 222
+ +A++ G L S GF+ + L++D ++LTN +++ NV
Sbjct: 309 WDIDSPYATNRGELLPVGSFGHTGFTGTSLWIDPTTKTYIILLTNAVHQPKGNV 362
>gi|56963167|ref|YP_174895.1| penicillin-binding protein 4 [Bacillus clausii KSM-K16]
gi|56909407|dbj|BAD63934.1| penicillin-binding protein 4 [Bacillus clausii KSM-K16]
Length = 461
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 32/246 (13%)
Query: 3 LMNHQAGF-DEMPLY-------KKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVS 54
L+NH +G D M L+ + D+ + +QP F P + YSN +++
Sbjct: 106 LLNHTSGLPDYMELFANVWDPTRYARNEDVLQMLIKHQPDPLFAPNDSWMYSNTGYIMLA 165
Query: 55 YIVERISGQKYADYVHEHVFEPLEMDRTAIL-------PDLSDNAYVQEKRKEDKGYDDQ 107
++E+ISG++Y D++ E +F+PL M RT + P D A+ R GY
Sbjct: 166 ILIEKISGKRYGDFLDEQIFQPLGMTRTQVYNRRVDPGPVPDDYAWGYVYRIGHGGY--- 222
Query: 108 GKLLGDTPFKLWMYPVGGAVG------TLGDLQKFAQALLERKTLFHRPETWTELYSTTS 161
L + P +++ + G G T+GDL + +AL + F RP ++S
Sbjct: 223 -VLPDEVPELHYVHYLDGLQGDGMVNSTVGDLLRLDRALYNDE--FVRPMLRQLMFSPVK 279
Query: 162 THPGTDIVRNAHGFWASHYGVTL---LGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQ 218
+ G N W L + H+G G+S++ + + ++L N +
Sbjct: 280 MNNGETF--NYGMGWLIERDEQLGRFVHHTGGWPGYSTWFKRYIDRDMTLIMLQNGERDH 337
Query: 219 VYNVQM 224
Y Q+
Sbjct: 338 AYTQQL 343
>gi|88713412|ref|ZP_01107495.1| beta-lactamase (penicillin-binding protein) (penicillinase)
[Flavobacteriales bacterium HTCC2170]
gi|88708322|gb|EAR00559.1| beta-lactamase (penicillin-binding protein) (penicillinase)
[Flavobacteriales bacterium HTCC2170]
Length = 382
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 30/192 (15%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
FEPG+ YSN ++ I+E+ISG +Y +Y+ +++FEPL M+ + ++ + + E
Sbjct: 182 FEPGSEGEYSNTGYVFLALIIEQISGMRYPEYLKQNIFEPLGMENSFVIYEEEHLGDLNE 241
Query: 97 KRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLE-----RKTLFHRPE 151
G + K+LG F +Y G V + DL F +ALL +++L E
Sbjct: 242 NYALSLG--NSIKVLG---FNSLIYGGNGIVSSTYDLNLFVEALLSNRLITKQSLDQMVE 296
Query: 152 TWTEL----------YSTTSTHPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLD 201
T + + T + T+ + + + FW H+G DG+ + L ++
Sbjct: 297 TQGAIKGIADYGYGWMTGTGDYWHTEELTDRNDFW----------HAGGFDGYRTVLSIN 346
Query: 202 LKNGIGQVILTN 213
+ +ILTN
Sbjct: 347 PDLDLQIIILTN 358
>gi|124005702|ref|ZP_01690541.1| beta-lactamase, putative [Microscilla marina ATCC 23134]
gi|123988770|gb|EAY28376.1| beta-lactamase, putative [Microscilla marina ATCC 23134]
Length = 617
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 25/159 (15%)
Query: 3 LMNHQAGFDEMPLYKK-GDK-SDLEEQFRDYQPI--------QSFEPGTTTSYSNFSTAL 52
L+NH +G+D P+Y DK + E + + + I Q F PG+ Y+N + +L
Sbjct: 328 LLNHNSGYDRKPVYNAIADKFPEFENRVANSKEIKPFLKYASQKFRPGSKYQYNNGAYSL 387
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEM-----DRT-AILPDLSDNAYVQEK-RKEDKGYD 105
+ ++ER +GQKY Y+ +H+ +PL M D+T L +L +Y +K K G
Sbjct: 388 LGMVIERATGQKYTAYIKQHILKPLGMSTAHYDKTPKKLQNLFGTSYRHKKGGKVSTGRP 447
Query: 106 DQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERK 144
D+ + + GG + D+ KF L RK
Sbjct: 448 DESAGIREAN--------GGLKAKVADMLKFMDFLKFRK 478
>gi|124003888|ref|ZP_01688736.1| beta-lactamase [Microscilla marina ATCC 23134]
gi|123990943|gb|EAY30410.1| beta-lactamase [Microscilla marina ATCC 23134]
Length = 547
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 21/190 (11%)
Query: 31 YQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSD 90
+Q +FEPG+ SY N L++ IV R+SGQ +AD+ ++F+PL M + D
Sbjct: 149 HQKKLNFEPGSQFSYCNTGYTLLAEIVARVSGQSFADFTQANIFKPLGMKNSLFYDD--- 205
Query: 91 NAYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGA--VGTLGDLQ----KFAQALLERK 144
EK +++ Y G L VG T DL F Q + K
Sbjct: 206 ----HEKIVKNRAYSYHRHHKGFKKSVLNFATVGATSLFTTANDLSLWAMNFEQLKIGSK 261
Query: 145 TLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY-GVTLLGHSGNADGFSSYLYLDLK 203
+F + +T +L + T G G + HY GV ++ HSG+ G+ YL
Sbjct: 262 AIFEQMQTTMKLPNGRKTGVGL-------GQFVGHYKGVKVVYHSGSDAGYRLYLVRFPA 314
Query: 204 NGIGQVILTN 213
+ ++L+N
Sbjct: 315 HNFAALVLSN 324
>gi|49484658|ref|YP_041882.1| hypothetical protein SAR2531 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|81650436|sp|Q6GDZ1|FLP_STAAR Protein flp (FmtA-like protein)
gi|49242787|emb|CAG41512.1| putative exported protein [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 499
Score = 59.3 bits (142), Expect = 5e-07, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 20/189 (10%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L+ I++ ++ Q Y Y+ +PL M T+ + K
Sbjct: 183 KPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSFKQN-------NNK 235
Query: 98 RKEDK-GYDDQGK--LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
K D GY+ QG ++ F LW P + + DL+ + + L + P+ +
Sbjct: 236 SKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQL------NPPDKYK 289
Query: 155 ELYSTTSTHPGTDIVR-NAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
L + + + I NA+ + W ++ L+ HSG D FSS++ L+ K G V+
Sbjct: 290 SLVQQSHKNLSSTIGEPNANAYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVV 349
Query: 211 LTNQLYEQV 219
L N E V
Sbjct: 350 LANLNSEYV 358
>gi|109157484|pdb|2DNS|A Chain A, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With D-Phenylalanine
gi|109157485|pdb|2DNS|B Chain B, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With D-Phenylalanine
gi|109157486|pdb|2DNS|C Chain C, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With D-Phenylalanine
gi|109157487|pdb|2DNS|D Chain D, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With D-Phenylalanine
gi|109157488|pdb|2DNS|E Chain E, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With D-Phenylalanine
gi|109157489|pdb|2DNS|F Chain F, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With D-Phenylalanine
gi|110591284|pdb|2DRW|A Chain A, The Crystal Structutre Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3
gi|110591285|pdb|2DRW|B Chain B, The Crystal Structutre Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3
gi|110591286|pdb|2DRW|C Chain C, The Crystal Structutre Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3
gi|110591287|pdb|2DRW|D Chain D, The Crystal Structutre Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3
gi|110591288|pdb|2DRW|E Chain E, The Crystal Structutre Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3
gi|110591289|pdb|2DRW|F Chain F, The Crystal Structutre Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3
gi|134104274|pdb|2EFU|A Chain A, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
gi|134104275|pdb|2EFU|B Chain B, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
gi|134104276|pdb|2EFU|C Chain C, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
gi|134104277|pdb|2EFU|D Chain D, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
gi|134104278|pdb|2EFU|E Chain E, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
gi|134104279|pdb|2EFU|F Chain F, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
gi|134104280|pdb|2EFX|A Chain A, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
Amide
gi|134104281|pdb|2EFX|B Chain B, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
Amide
gi|134104282|pdb|2EFX|C Chain C, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
Amide
gi|134104283|pdb|2EFX|D Chain D, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
Amide
gi|134104284|pdb|2EFX|E Chain E, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
Amide
gi|134104285|pdb|2EFX|F Chain F, The Crystal Structure Of D-Amino Acid Amidase From
Ochrobactrum Anthropi Sv3 Complexed With L-Phenylalanine
Amide
gi|7619811|dbj|BAA94704.1| D-Amino acid amidase [Ochrobactrum anthropi]
Length = 363
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 62/236 (26%), Positives = 101/236 (42%), Gaps = 30/236 (12%)
Query: 3 LMNHQAGFDE----MPLYKKGDKSDLEEQFRDY---QPIQSFEPGTTTSYSNFSTALVSY 55
L+NH++G + MP+ DKS ++ D+ +Q EP YSN L
Sbjct: 103 LLNHRSGLPDFETSMPMIS--DKSWTAQEIVDFSFRHGVQK-EPWHGMEYSNTGYVLAGM 159
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAI-----LP-DLSDNAYVQEKR-KEDKGYDDQG 108
I+ +G+ Y+D++ +F PL M T + P + Y+ E+ +D G
Sbjct: 160 IIAHETGKPYSDHLRSRIFAPLGMKDTWVGTHETFPIEREARGYMHAAADDENPQWDVSG 219
Query: 109 KLLGDTPFKLW----MYPVGGA------VGTLGDLQKFAQALLERKTLFHRPETWTELYS 158
GD +W +P+ GA V T D+ KF AL + + L + +
Sbjct: 220 A--GDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLWEMKDNI 277
Query: 159 TTSTHPGTDIVRNAHGFWASHYGVT-LLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
+ PG++ V N HG YG + L GH G G +S + D + G +++ N
Sbjct: 278 KPAFFPGSNTVANGHGLLLMRYGSSELKGHLGQIPGHTSIMGRDEETGAALMLIQN 333
>gi|42781328|ref|NP_978575.1| hypothetical protein BCE_2264 [Bacillus cereus ATCC 10987]
gi|42737250|gb|AAS41183.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 485
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 33/234 (14%)
Query: 2 DLMNHQAGF---DEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVE 58
DL +H+ G D + + DL E+ + F T+ Y+N A +SYIVE
Sbjct: 112 DLASHRTGVSRHDALWYSSSLSRKDLVEKIKHLPLDAPFR--TSFLYNNLMYATISYIVE 169
Query: 59 RISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDK---GYDDQGKLLGDTP 115
I+ Q + Y EH+ EPL M T N V + + D+ Y + + + P
Sbjct: 170 NITNQTWEQYTTEHILEPLNMRHT--------NFSVTDSQTTDEYALPYIENDGEIKEVP 221
Query: 116 FKLWMYPVGGAVGTLGDLQKFAQALL----ERKTLFHR---PETWTELYSTTSTHPGTDI 168
F+ + VG A ++ A +L E K H E ++Y+ ++ P +
Sbjct: 222 FRN-IDTVGAAGCINSTIKDMANWVLLHLNEGKFGDHELISSELLQQMYTPHNSIPDQPV 280
Query: 169 VR------NAHG---FWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
+ N++G F +++ G ++ H GN DGFS+ + IG VILTN
Sbjct: 281 LSLPESPLNSYGLGWFISAYRGKKVIHHGGNIDGFSALVSFIPTENIGLVILTN 334
>gi|108764044|ref|YP_635284.1| beta lactamase family protein [Myxococcus xanthus DK 1622]
gi|108467924|gb|ABF93109.1| beta lactamase family protein [Myxococcus xanthus DK 1622]
Length = 741
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 36 SFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQ 95
+FEP T Y+ + L+ VE SGQ Y DY+ EH+F+P A +P+ +
Sbjct: 188 AFEPRTRYLYTTWGYNLLGAAVETASGQSYRDYLREHIFKP------AGMPNADLDITAT 241
Query: 96 EKRKEDKGYDDQGKLLGDTPF--KLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETW 153
+ KGY QG L + F + GG T+GD+ F +A+L TL R ET
Sbjct: 242 RDEHQAKGYRIQGAALKPSRFLDVSSRFAGGGTRATVGDMLGFGRAVLSH-TLVSR-ETM 299
Query: 154 TELYSTTSTHPG 165
+ ++ ST G
Sbjct: 300 GRMQTSMSTLDG 311
>gi|119895162|ref|XP_587376.3| PREDICTED: similar to serine beta lactamase-like protein LACT-1
[Bos taurus]
Length = 556
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 40/207 (19%)
Query: 5 NHQAGFDEMPLYKKGDKSD----LEEQFRDYQPIQS----------FEPGTTTSYSNFST 50
N G + P KK D L+E+F + I+S F+PG+ YS F
Sbjct: 278 NETKGRNSKPCKKKNDFEQGELYLKEKFEN--SIESLRLFKNDPLFFKPGSQFLYSTFGY 335
Query: 51 ALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKL 110
L++ IVER SG KY DY+ + +F L+M T +N V R Y+ + +L
Sbjct: 336 TLLAAIVERASGYKYLDYMQK-IFHDLDMLTTV----QEENEPVIYNRARFYVYNKKKRL 390
Query: 111 LGDTPF--KLWMYPVGGAVGTLGDLQKFAQALLERKTL-------------FHRPETWTE 155
+ +TP+ + + GG + T+GDL KF A+L + + +PET
Sbjct: 391 V-NTPYVDNSYKWAGGGFLSTVGDLLKFGNAMLYGYQVGLFKNANENLLPGYLKPETMLM 449
Query: 156 LYSTTSTHPGTDIVRNAHGFWASHYGV 182
+++ P T++ + G +A +GV
Sbjct: 450 IWTPV---PNTEMSWDKEGKYAMAWGV 473
>gi|52143186|ref|YP_083643.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus cereus E33L]
gi|51976655|gb|AAU18205.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus cereus E33L]
Length = 385
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 53/211 (25%), Positives = 90/211 (42%), Gaps = 27/211 (12%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G + K D D+++ + + ++ F PG SYSN ++
Sbjct: 152 ILNHTSGIADYINSKDFDIMDIKKSYTAEEFVKMGISLPPDFAPGKGWSYSNTGYVILGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGD 113
++E+++G YA+ V + EPL++ T L N+ V K +GY D L D
Sbjct: 212 LIEKVTGNSYAEEVENRIIEPLDLSNTF----LPGNSSVIPGTKHARGYLQRDGASELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T R
Sbjct: 268 VTYINPGSSDGDMISTADDLNKFFSYLLGGKLL--KEQQLKQMLTTVPTE------REGT 319
Query: 174 GFWAS------HYGVTLLGHSGNADGFSSYL 198
G+ GV++ GH G GFS+++
Sbjct: 320 GYGLGILEIKLPNGVSVWGHRGGVPGFSTFV 350
>gi|4127525|emb|CAA09676.1| D-stereospecific peptide hydrolase [Bacillus cereus]
Length = 389
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 36/216 (16%)
Query: 2 DLMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVS 54
+++NH +G E K D +D ++ + + ++ F PG SYSN L+
Sbjct: 151 EILNHTSGIAEYSRSKDVDFTDTKKSYTAEELVKMGISFPPDFAPGKGWSYSNTGYVLLG 210
Query: 55 YIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLG 112
++E+++G YA+ V + EPLE+ T L N+ V +GY D L
Sbjct: 211 ILIEKVTGNSYAEEVENRIIEPLELSNTF----LPGNSSVIPGTNHARGYVQPDGASELK 266
Query: 113 DTPFKLWMYPVGGA-----VGTLGDLQKFAQALLERKTLFHRPETWTELYSTTST-HPGT 166
D + P G+ + T DL KF LL K L + + ++ +T T G
Sbjct: 267 DVTY---YNPSAGSSAGDMISTADDLNKFFSYLLGGKLL--KEQQLKQMLTTVPTGKEGI 321
Query: 167 DIVRNAHGFWASHY------GVTLLGHSGNADGFSS 196
D G+ Y GV++ GH+G GF++
Sbjct: 322 D------GYGLGIYETKLPSGVSIWGHTGGILGFTT 351
>gi|118471628|ref|YP_885965.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
gi|118172915|gb|ABK73811.1| beta-lactamase [Mycobacterium smegmatis str. MC2 155]
Length = 374
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 3 LMNHQAG---FDEMPLYKKGDKSDLEEQFRDYQ--------PIQSFEPGTTTSYSNFSTA 51
L Q+G +D +P ++ +D + F Q P+Q F PGT Y N +T
Sbjct: 139 LAQMQSGLVTYDGVPEFEAAFLADPQRTFTPQQLLGYALDKPLQ-FPPGTQYDYCNTNTV 197
Query: 52 LVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLL 111
L+ +VE++SGQ ADYV +H+ PL++ T+I + A+ + + D ++
Sbjct: 198 LLGLVVEKLSGQSLADYVRQHILVPLKLTHTSI---PTSPAFPEPHPQGYTVLDGTPRVT 254
Query: 112 GD-TPFKLWMYPVGGAVGTLGDLQKFAQAL 140
D P W + G + TL D++ +AQ L
Sbjct: 255 TDWNPS--WAWSNGNMISTLDDMRVWAQKL 282
>gi|124004316|ref|ZP_01689162.1| beta-lactamase, putative [Microscilla marina ATCC 23134]
gi|123990386|gb|EAY29885.1| beta-lactamase, putative [Microscilla marina ATCC 23134]
Length = 617
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 49/235 (20%)
Query: 3 LMNHQAGFDEMPLYKK-GDK-SDLEEQFRDYQPI--------QSFEPGTTTSYSNFSTAL 52
L+NH +G+D P+Y DK + E + + + I Q F PG+ Y+N + +L
Sbjct: 328 LLNHNSGYDRKPVYNAIADKFPEFENRVANSKEIKPFLKYASQKFRPGSKYQYNNGAYSL 387
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEM-----DRT-AILPDLSDNAYVQEKR-KEDKGYD 105
+ ++E+ +GQKY Y+ +H+ +PL M D+T L +L +Y +K K G
Sbjct: 388 LGMVIEQATGQKYIAYIKQHILKPLGMSTAHYDKTPQKLQNLFGTSYRHKKDGKVSTGRP 447
Query: 106 DQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQAL-LERKTLFHR------PETWTELYS 158
D+ + + GG + D+ KF L ++T + + P T E Y
Sbjct: 448 DESAGIREAN--------GGLKAKVADMLKFMDFLKFRKRTKYLKRYEKVLPRTVLEKYY 499
Query: 159 -----TTSTHPGTDIVRNAHGFW------------ASHYGVTLLGHSGNADGFSS 196
ST HGF+ + ++GHSG+ GF S
Sbjct: 500 FDLNLQDSTQYTRTYKTTQHGFYFVNGFVNTLANEGTKNQFEVMGHSGSVHGFLS 554
>gi|94968028|ref|YP_590076.1| beta-lactamase [Acidobacteria bacterium Ellin345]
gi|94550078|gb|ABF40002.1| beta-lactamase [Acidobacteria bacterium Ellin345]
Length = 367
Score = 58.9 bits (141), Expect = 7e-07, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRT------AILPDLSD 90
F+PGT YS + ++ ++E SG+K+ DY+ + V P +M T I+P+ +
Sbjct: 169 FDPGTKFGYSTYGYTVLGCVIEGASGEKFMDYLQKSVLAPAKMTHTLQDNLLTIIPNRT- 227
Query: 91 NAYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRP 150
Y EK D + G + D+ +KL P GG + + D+ +F A+++ +
Sbjct: 228 RYYDTEK---DGTVINAGYM--DSSYKL---PGGGLISDVTDMSEFMIAMMQHTIVSQST 279
Query: 151 E--TWTELYSTTSTHPGTDIVRNAHGFWASH-YGVTLLGHSGNADGFSSYLYLDLKNGIG 207
WT + ++ G + GF +G + H+G G S+ +Y+ + G
Sbjct: 280 VDLMWTPVKTSDGKTSGYGL-----GFGTGDLHGWKTISHTGGQKGTSTIIYMVPEKQFG 334
Query: 208 QVILTN 213
VILTN
Sbjct: 335 VVILTN 340
>gi|116621608|ref|YP_823764.1| beta-lactamase [Solibacter usitatus Ellin6076]
gi|116224770|gb|ABJ83479.1| beta-lactamase [Solibacter usitatus Ellin6076]
Length = 562
Score = 58.9 bits (141), Expect = 8e-07, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 101/231 (43%), Gaps = 42/231 (18%)
Query: 1 LDLMNHQAG---FDEMPLYKK-----GDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTAL 52
+L+ H +G F P Y K ++L +FRD +P+ F+PG +YSN L
Sbjct: 117 FNLLTHTSGIPNFTGFPEYGKLEPFAATPAELVARFRD-KPL-DFQPGEKWNYSNSGYVL 174
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEM------DRTAILPDLSDNAYVQEKRKEDKGYDD 106
+ Y++E+I+G Y +V E++F PL M +AI+P + + YV + G ++
Sbjct: 175 LGYLIEKITGGTYEKFVRENIFTPLGMMDSGYDSNSAIIPRRA-SGYVNGR----NGMEN 229
Query: 107 QGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETW----TELYSTTST 162
G + P + G T DL K+ Q L K L +P + T + +
Sbjct: 230 AGFINMTIP-----HGAGALYSTTEDLLKWQQGLFGGKVL--QPASLEKMTTPFKNNYAC 282
Query: 163 HPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
G D V G ++ H G +GF++ L + + V+L N
Sbjct: 283 GVGVDTVA----------GRKVISHGGGIEGFNTQLEYYPDDKLTVVVLGN 323
>gi|88196374|ref|YP_501197.1| hypothetical protein SAOUHSC_02736 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|75467626|sp|Q9KJ74|FLP_STAAU Protein flp (FmtA-like protein)
gi|110808234|sp|Q2FVH6|FLP_STAA8 Protein flp (FmtA-like protein)
gi|9246437|gb|AAF86053.1|AF210139_1 fmtA-like protein [Staphylococcus aureus]
gi|87203932|gb|ABD31742.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
Length = 498
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L+ I++ ++ Q Y Y+ +PL M T+ K
Sbjct: 183 KPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSF-------KQTNYK 235
Query: 98 RKEDK-GYDDQGK--LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
K D GY+ QG ++ F LW P + + DL+ + + L + P+ +
Sbjct: 236 SKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQL------NPPDKYK 289
Query: 155 ELYSTTSTHPGTDIVR-NAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
L + + + I NA+ + W ++ L+ HSG D FSS++ L+ K G V+
Sbjct: 290 SLVQQSHKNLSSTIGEPNANAYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVV 349
Query: 211 LTNQLYEQV 219
L N E V
Sbjct: 350 LANLNSEYV 358
>gi|87160635|ref|YP_495021.1| beta-lactamase [Staphylococcus aureus subsp. aureus USA300]
gi|151222552|ref|YP_001333374.1| fmtA-like beta-lactam resistance protein [Staphylococcus aureus
subsp. aureus str. Newman]
gi|87126609|gb|ABD21123.1| beta-lactamase [Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|150375352|dbj|BAF68612.1| fmtA-like beta-lactam resistance protein [Staphylococcus aureus
subsp. aureus str. Newman]
Length = 498
Score = 58.5 bits (140), Expect = 8e-07, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L+ I++ ++ Q Y Y+ +PL M T+ K
Sbjct: 183 KPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSF-------KQTNYK 235
Query: 98 RKEDK-GYDDQGK--LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
K D GY+ QG ++ F LW P + + DL+ + + L + P+ +
Sbjct: 236 SKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQL------NPPDKYK 289
Query: 155 ELYSTTSTHPGTDIVR-NAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
L + + + I NA+ + W ++ L+ HSG D FSS++ L+ K G V+
Sbjct: 290 SLVQQSHKNLSSTIGEPNANAYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVV 349
Query: 211 LTNQLYEQV 219
L N E V
Sbjct: 350 LANLNSEYV 358
>gi|57652256|ref|YP_187245.1| fmtA-like protein [Staphylococcus aureus subsp. aureus COL]
gi|81693787|sp|Q5HDB2|FLP_STAAC Protein flp (FmtA-like protein)
gi|57286442|gb|AAW38536.1| fmtA-like protein [Staphylococcus aureus subsp. aureus COL]
Length = 498
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 20/189 (10%)
Query: 38 EPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEK 97
+PG YSN + L+ I++ ++ Q Y Y+ +PL M T+ K
Sbjct: 183 KPGEEFEYSNMNYDLLGLIIQNVTKQSYTKYITNSWLKPLHMTHTSF-------KQTNYK 235
Query: 98 RKEDK-GYDDQGK--LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
K D GY+ QG ++ F LW P + + DL+ + + L + P+ +
Sbjct: 236 SKHDAIGYELQGSTPVVSKPEFNLWDTPSAYMMTSTEDLEHWIKFQL------NPPDKYK 289
Query: 155 ELYSTTSTHPGTDIVR-NAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
L + + + I NA+ + W ++ L+ HSG D FSS++ L+ K G V+
Sbjct: 290 SLVQQSHKNLSSTIGEPNANAYASGWFTNNDEHLVFHSGTLDNFSSFILLNPKQNYGIVV 349
Query: 211 LTNQLYEQV 219
L N E V
Sbjct: 350 LANLNSEYV 358
>gi|88712334|ref|ZP_01106421.1| beta-lactamase, putative [Flavobacteriales bacterium HTCC2170]
gi|88709740|gb|EAR01973.1| beta-lactamase, putative [Flavobacteriales bacterium HTCC2170]
Length = 420
Score = 58.5 bits (140), Expect = 9e-07, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 13/92 (14%)
Query: 3 LMNHQAGFDEMP-------LYKKGDKSD-----LEEQFRDYQPIQSFEPGTTTSYSNFST 50
L+NH +G + ++ G+ S ++E F Y + +FEPG T+Y+N
Sbjct: 157 LLNHSSGIPDASGLSFAKWIHHDGEPSVDQTAFIKEVFPKYATL-AFEPGENTAYTNIGY 215
Query: 51 ALVSYIVERISGQKYADYVHEHVFEPLEMDRT 82
L+ I+E++SGQ Y +Y+ +H+ +PLEM++T
Sbjct: 216 MLLGAIIEKVSGQPYRNYIRQHILKPLEMNQT 247
>gi|30262987|ref|NP_845364.1| alkaline D-peptidase [Bacillus anthracis str. Ames]
gi|49185825|ref|YP_029077.1| alkaline D-peptidase [Bacillus anthracis str. Sterne]
gi|50196939|ref|YP_019673.2| alkaline d-peptidase [Bacillus anthracis str. 'Ames Ancestor']
gi|65320299|ref|ZP_00393258.1| COG1680: Beta-lactamase class C and other penicillin binding
proteins [Bacillus anthracis str. A2012]
gi|30257620|gb|AAP26850.1| alkaline D-peptidase [Bacillus anthracis str. Ames]
gi|49179752|gb|AAT55128.1| alkaline D-peptidase [Bacillus anthracis str. Sterne]
gi|50083001|gb|AAT32148.2| alkaline D-peptidase [Bacillus anthracis str. 'Ames Ancestor']
Length = 388
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 37/217 (17%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ----------SFEPGTTTSYSNFSTAL 52
L+NH +G E Y K +D+ + Y + F PG SYSN +
Sbjct: 150 LLNHTSGIAE---YLKSKDADIMNSKKTYTAEEIVKIGLALPSDFSPGKGWSYSNTGYVI 206
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY---DDQGK 109
+ ++E+I+G YA+ + + + EPL++ T L N+ V + +GY ++ G+
Sbjct: 207 LGMLIEKITGNSYAEEIEKRIIEPLDLPNTF----LPGNSPVIPGKNHARGYVKMEETGE 262
Query: 110 LLGDTPFKLWMYPVGG-AVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHP--GT 166
L T + + G + DL KF +LL K L R EL +T P G
Sbjct: 263 LKDITYYNPSLANAAGDMISNADDLNKFFSSLLGGKLLKER-----ELKEMLTTVPIEGK 317
Query: 167 DIVRNAHGFWASHY------GVTLLGHSGNADGFSSY 197
I G+ Y GV++ GH G+ GF ++
Sbjct: 318 GI---GDGYGLGIYETKLPNGVSVWGHGGSIPGFMTF 351
>gi|118478349|ref|YP_895500.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus thuringiensis str. Al Hakam]
gi|118417574|gb|ABK85993.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus thuringiensis str. Al Hakam]
Length = 388
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 37/217 (17%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ----------SFEPGTTTSYSNFSTAL 52
L+NH +G E Y K +D+ + Y + F PG SYSN +
Sbjct: 150 LLNHTSGIAE---YLKSKDADIMNSKKTYTAEEIVKIGLALPSDFSPGKGWSYSNTGYVI 206
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY---DDQGK 109
+ ++E+I+G YA+ + + + EPL++ T L N+ V + +GY ++ G+
Sbjct: 207 LGMLIEKITGNSYAEEIEKRIIEPLDLPNTF----LPGNSPVIPGKNHARGYVKMEETGE 262
Query: 110 LLGDTPFKLWMYPVGG-AVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHP--GT 166
L T + + G + DL KF +LL K L R EL +T P G
Sbjct: 263 LKDITYYNPSLANAAGDMISNADDLNKFFSSLLGGKLLKER-----ELKEMLTTVPVEGK 317
Query: 167 DIVRNAHGFWASHY------GVTLLGHSGNADGFSSY 197
I G+ Y GV++ GH G+ GF ++
Sbjct: 318 GI---GDGYGLGIYETKLPNGVSVWGHGGSIPGFMTF 351
>gi|49481674|ref|YP_037093.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|49333230|gb|AAT63876.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus thuringiensis serovar konkukian str. 97-27]
Length = 389
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 37/217 (17%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ----------SFEPGTTTSYSNFSTAL 52
L+NH +G E Y K +D+ + Y + F PG SYSN +
Sbjct: 150 LLNHTSGIAE---YLKSKDADIMNSKKTYTAEEIVKIGLALPSDFSPGKGWSYSNTGYVI 206
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY---DDQGK 109
+ ++E+I+G YA+ + + + EPL++ T L N+ V + +GY ++ G+
Sbjct: 207 LGMLIEKITGNSYAEEIEKRIIEPLDLPNTF----LPGNSPVIPGKNHARGYVKMEETGE 262
Query: 110 LLGDTPFKLWMYPVGG-AVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHP--GT 166
L T + + G + DL KF +LL K L R EL +T P G
Sbjct: 263 LKDITYYNPSLANAAGDMISNADDLNKFFSSLLGGKLLKER-----ELKEMLTTVPIEGK 317
Query: 167 DIVRNAHGFWASHY------GVTLLGHSGNADGFSSY 197
I G+ Y GV++ GH G+ GF ++
Sbjct: 318 GI---GDGYGLGIYETKLPNGVSVWGHGGSIPGFMTF 351
>gi|52841352|ref|YP_095151.1| serine-type D-Ala-D-Ala carboxypeptidase [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|52628463|gb|AAU27204.1| serine-type D-Ala-D-Ala carboxypeptidase [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
Length = 371
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 31 YQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPD--- 87
Y F+PGT YSN + L+ I+E I+G+ YA+ + +++ +PL + T I
Sbjct: 176 YDQKPDFKPGTAYEYSNTNYLLLQLIIENITGESYAESIKKYILKPLHLKNTYIEKQEFD 235
Query: 88 -----LSDNAYVQEKRK-EDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALL 141
LS + Y E K D D G L D GG + T D+ F QALL
Sbjct: 236 DDHHYLSTHGYTLEDGKVVDVTDHDDGFGLAD----------GGIISTAEDINIFVQALL 285
Query: 142 ERKTLFHRPETWTELYSTTSTHPGTDIVR---NAHGFWASHYGVTLLGHSGNADGFSSYL 198
+ K L P T + + T + G I R N W+ H+G + G+
Sbjct: 286 KDKILL-SPNYLTMMLTFTDDY-GFGIGREEINGEIAWS---------HNGASSGYQGQY 334
Query: 199 YLDLKNGIGQVILTN 213
Y + VILTN
Sbjct: 335 YYFPDRQLTVVILTN 349
>gi|94967643|ref|YP_589691.1| beta-lactamase [Acidobacteria bacterium Ellin345]
gi|94549693|gb|ABF39617.1| beta-lactamase [Acidobacteria bacterium Ellin345]
Length = 391
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 56/210 (26%), Positives = 91/210 (43%), Gaps = 37/210 (17%)
Query: 27 QFRDYQPIQ-SFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAIL 85
+F D Q + FEPG+ +YS L+ ++E I+ Q + + VFEP M RT+++
Sbjct: 156 RFEDDQKVHIHFEPGSRYAYSGEGLKLLQLVIETIAKQPLQQLMEKRVFEPFGMTRTSMV 215
Query: 86 --PDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLER 143
+ DN GYD+ G+ LG K G V T+ D +F Q ++
Sbjct: 216 WNAEFEDNF--------ANGYDENGRNLGPDRRKS-AGAAGSMVTTIRDFSRFLQLVMHG 266
Query: 144 KTLFHRPETWTEL---------------YSTTSTHPGTDIVRNAHG-----FWASHYGVT 183
L P+ +E+ + +TH D +R ++G +W S YG
Sbjct: 267 DRL--SPKMHSEMLKAQVRIHAQHEFPTFENKATH-ANDAIRLSYGLGWGLYW-SPYGEA 322
Query: 184 LLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
G+ DG+ +Y +G G +I+TN
Sbjct: 323 FF-KEGHDDGWRNYTVAFSDSGKGMIIMTN 351
>gi|13475563|ref|NP_107127.1| hypothetical protein mll6665 [Mesorhizobium loti MAFF303099]
gi|14026315|dbj|BAB52913.1| mll6665 [Mesorhizobium loti MAFF303099]
Length = 554
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 81/187 (43%), Gaps = 35/187 (18%)
Query: 45 YSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTA--ILPDLSDNAYVQEKRKEDK 102
YSN A+ ++E ++ + YA+YV E++ +PL MD+T+ + P ++ E
Sbjct: 165 YSNAGIAVAGRVIETLTRKSYAEYVSENILKPLGMDQTSSGLAPGIA----------ERL 214
Query: 103 GYDDQGKLLGDTP---FKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT----- 154
D L GD+P F L P G T D+ ++ Q LL P+ W
Sbjct: 215 APADMWTLEGDSPAPVFDLGGPPAGNIYSTTSDMARYVQCLLRGG---FAPDGWQIVSPG 271
Query: 155 ---ELYSTTSTHPGTDIVRNAHGFWASHYGV------TLLGHSGNADGFSSYLYLDLKNG 205
E++ + V N +G +GV T +GH G G+SS + L G
Sbjct: 272 SLREMWVPIGKRASGERVANTYGLC---FGVGDVDGWTSVGHGGAVYGYSSQMILLPAAG 328
Query: 206 IGQVILT 212
+G +I +
Sbjct: 329 VGVLIFS 335
>gi|119880485|ref|ZP_01646820.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
CNS205]
gi|119826562|gb|EAX29112.1| Serine-type D-Ala-D-Ala carboxypeptidase [Salinispora arenicola
CNS205]
Length = 416
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 15/167 (8%)
Query: 36 SFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQ 95
SFEPGTT YSN + + ++++++G+ A+ + + PL++ R P + +
Sbjct: 221 SFEPGTTWEYSNTNYLVAGLLIQKVTGRPVAEEITNRIIVPLQL-RDTYFPRVGEQGI-- 277
Query: 96 EKRKEDKGY--DDQGKLLGDTPF--KLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPE 151
+ + GY DD K L D W + G + + D +F ALL L RP
Sbjct: 278 -RGRHPHGYYTDDPDKPLQDVTRMDPSWAWAAGAMISSPSDTNRFFTALLAGDLL--RP- 333
Query: 152 TWTELYSTTSTHPGTDIVRNAHGF--WASHYGVTLLGHSGNADGFSS 196
EL +T P + I+ G W G GH G+ GF++
Sbjct: 334 --AELDQMRTTVPASPILAYGLGLMSWDLPCGDRAWGHGGDIPGFTT 378
>gi|124006018|ref|ZP_01690855.1| beta-lactamase [Microscilla marina ATCC 23134]
gi|123988425|gb|EAY28071.1| beta-lactamase [Microscilla marina ATCC 23134]
Length = 384
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 32 QPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDN 91
QP F+ G + Y+N L++ I+E++S Q Y +Y+ E +F L+M + +
Sbjct: 195 QPKPYFKCGESWLYTNTGYVLLALIIEKVSRQSYPNYLQERIFNRLDMRNSEVFD----- 249
Query: 92 AYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPE 151
Y + G+ + KL D F +Y GG + DL K+ QAL R +
Sbjct: 250 -YQHKLPYRVYGFRNNKKLYDDHLFNR-IYGDGGIYASAADLYKWDQAL--RTNRLVKRT 305
Query: 152 TWTELYSTTSTHPGTDIVRNAHGF-WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVI 210
T E +S T + ++ +GF W + HSG++ GF S + +L ++
Sbjct: 306 TLKEAFSPTKYY--NNMFSKNYGFGWHIDKDGQTVYHSGSSGGFRSIILRNLHQNNCVIL 363
Query: 211 LTNQ---LYEQVYNV 222
L+N YE + V
Sbjct: 364 LSNNQDGRYENIARV 378
>gi|89209440|ref|ZP_01187857.1| Beta-lactamase [Bacillus weihenstephanensis KBAB4]
gi|89152633|gb|EAR72785.1| Beta-lactamase [Bacillus weihenstephanensis KBAB4]
Length = 343
Score = 57.8 bits (138), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 14/142 (9%)
Query: 10 FDEMPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYV 69
+ + P+Y +D F++Y F PG+ SYSN L+ IVE+++G K+A+YV
Sbjct: 126 WKDTPMYSIKSPADFLPMFQNYH--MKFNPGSKFSYSNAGYILLGLIVEKLTGMKFAEYV 183
Query: 70 HEHVFEPLEMD-----RTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVG 124
E++F+ M R LP+ + Y+ K DD + P G
Sbjct: 184 KENIFQVCGMSDSGYFRMDQLPERTALGYIDNK-------DDNTWRTNIYSVPIVGGPDG 236
Query: 125 GAVGTLGDLQKFAQALLERKTL 146
GA T+ DL +F L K L
Sbjct: 237 GAFTTVLDLGEFWNGLFNGKLL 258
>gi|47570164|ref|ZP_00240820.1| penicillin-binding protein [Bacillus cereus G9241]
gi|47553183|gb|EAL11578.1| penicillin-binding protein [Bacillus cereus G9241]
Length = 485
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 60/234 (25%), Positives = 100/234 (42%), Gaps = 33/234 (14%)
Query: 2 DLMNHQAGFD--EMPLYKKG-DKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVE 58
DL +H+ G E Y + DL E+ + F T+ Y+N A +SYIVE
Sbjct: 112 DLASHRTGVSRHEALWYSSSLSREDLVEKIKHLPLDAPFR--TSFLYNNLMYATISYIVE 169
Query: 59 RISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKG--YDDQGKLLGDTPF 116
I+ Q + Y EH+ EPL M T + + + +D Y + + + PF
Sbjct: 170 NITNQTWEQYATEHILEPLNMRHTNF-------SVIDSQTTDDYALPYIENDGEIKEVPF 222
Query: 117 KLWMYPVGGAVG----TLGDLQKFAQALLERKTLFHR----PETWTELYSTTSTHPGTDI 168
+ GA G T+ D+ + L++ E ++Y+ ++ P +
Sbjct: 223 R--NIDTVGAAGCINSTIEDMANWVLLHLKQGKFGEHELISSELLQQMYTPHNSIPDQPV 280
Query: 169 VR------NAHG---FWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
+ N++G F +++ G ++ H GN DGFS+ + IG VILTN
Sbjct: 281 LSLPESPLNSYGLGWFISAYRGNKVIHHGGNIDGFSALVSFIPTENIGLVILTN 334
>gi|118478619|ref|YP_895770.1| alkaline D-peptidase and alkaline D-peptidase fusion [Bacillus
thuringiensis str. Al Hakam]
gi|118417844|gb|ABK86263.1| alkaline D-peptidase and alkaline D-peptidase fusion [Bacillus
thuringiensis str. Al Hakam]
Length = 720
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/204 (26%), Positives = 94/204 (46%), Gaps = 19/204 (9%)
Query: 3 LMNHQAGFDE--MPLYKKGDKSDLEEQFRDYQPIQ---SFEPGTTTSYSNFSTALVSYIV 57
L+NH +G + P K+ + E + Q I EP SYSN + ++ I+
Sbjct: 140 LLNHTSGIADYLTPDLKEKLIENPSENYTAEQLISRALQLEPVKGWSYSNTNMVIIGLII 199
Query: 58 ERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQG-KLLGDTPF 116
++++G+ YA+ + + + PL + T +LP S + +K +GY + G KL+ T F
Sbjct: 200 QKVTGESYAEQIQKRIINPLSLKET-VLPGSS----MDIPKKNARGYLNTGDKLVDITLF 254
Query: 117 KLWMYPVGGAVGTLG-DLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGF 175
G + + G D+ F +ALL K L PE E+ + T P + + G
Sbjct: 255 NPSFANASGEMISTGEDMTTFFRALLGGKLL--TPEMQKEMVTHTVDTP---LGKYGLGI 309
Query: 176 WASHY--GVTLLGHSGNADGFSSY 197
A+ G + GH G GF+++
Sbjct: 310 HATKLPDGTEVWGHGGGIPGFTNF 333
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 36/245 (14%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDL---EEQFRDYQPIQ----------SFEPGTTTSYSNFS 49
L+NH +G + Y D D+ + FR Y + F PG YSN +
Sbjct: 486 LLNHTSG---IAAYTDLDMRDITLPQNPFRYYSTDELISLALAKPPVFAPGEGWDYSNTN 542
Query: 50 TALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGK 109
T + I+ +++G YA+ + + EPL + T + + ++++ K D G+
Sbjct: 543 TVIAGEIIRKVTGDTYAEQIRKRFIEPLGLKETFV---MEASSHIPGKHANGYNMDRSGR 599
Query: 110 LLGDTPF-KLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDI 168
L T + W G V T+ DL F ALL K L EL + T + I
Sbjct: 600 LYDLTEINQSWANAAGDMVSTVEDLTTFFSALLGGKLLNQ------ELMNQMLTTVDSPI 653
Query: 169 VRNAHGFWASHY--GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPE 226
+ G + G + GH+G GF + +G I + N PE
Sbjct: 654 GKVGLGVYEEKTPDGQSYWGHAGGTFGFETR--------VGGPIGGEHILVTAINAVGPE 705
Query: 227 LIFGK 231
+I G+
Sbjct: 706 VITGR 710
>gi|37524187|ref|NP_927531.1| hypothetical protein plu0165 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783610|emb|CAE12460.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 529
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 70/229 (30%), Positives = 101/229 (44%), Gaps = 43/229 (18%)
Query: 3 LMNHQAGF-DEMPLYKKGDKS--------DLEEQFRDYQPIQSFEPGTTTSYSNFSTALV 53
L++H +G DE LY+ K+ DL + Q +F PG YSN L+
Sbjct: 113 LIHHTSGLRDEFLLYELAGKNSDFDHRHIDLVRKLTQRQQALNFTPGEYHLYSNTGYNLL 172
Query: 54 SYIVERISGQKYADYVHEHVFEPLEM-------DRTAILPDLSDNAYVQEKRKEDKGYDD 106
+ IV +SG+ +Y E+VF PL+M D T I+PD + Y K DD
Sbjct: 173 AEIVRVVSGKSLKEYAEENVFAPLKMKDTFFYDDITEIIPDRA-MGYTYNKNSHQWIRDD 231
Query: 107 QGKLLGDTPFKLWMYPVGGA--VGTLGDLQKFAQALLERKTLFHRPETWTELYSTTS-TH 163
L DT VGG+ T+ DL ++ +A F+ P +L S T
Sbjct: 232 ----LNDT-------VVGGSGLHSTVNDLCRWIRA-------FYSPSIVQDLLPQLSRTL 273
Query: 164 PGTDIVRN--AHGFWASHY-GVTLLGHSGNADGFSSYLYL--DLKNGIG 207
T+ RN A+GF S G ++ H G+ GF S++ + D K GI
Sbjct: 274 NLTNGNRNNYAYGFIISQREGQKIIQHGGSYTGFKSHVCILPDAKFGIA 322
>gi|16266764|dbj|BAB69970.1| alkaline D-peptidase homolog [Bacillus cereus]
Length = 389
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 36/217 (16%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G E K D +D ++ + + ++ F PG SYSN L+
Sbjct: 152 ILNHTSGIAEYSRSKDADFTDTKKSYTAEELVKMGVSLPPDFAPGKGWSYSNTGYVLLGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGD 113
++E+++ YA+ + + EPLE+ T L N+ V +GY D L D
Sbjct: 212 LIEKVTRNSYAEEIENRIIEPLELSNTF----LPGNSSVIPGTNHARGYVQPDGASELKD 267
Query: 114 TPFKLWMYPVGGA-----VGTLGDLQKFAQALLERKTLFHRPETWTELYSTTST-HPGTD 167
+ P G+ + T DL KF LL K L + + ++ +T T G D
Sbjct: 268 VTY---YNPSAGSSAGDMISTADDLNKFFSYLLGGKLL--KEQQLKQMLTTVPTGKEGID 322
Query: 168 IVRNAHGFWASHY------GVTLLGHSGNADGFSSYL 198
G+ Y GV++ GH+G GF++++
Sbjct: 323 ------GYGLGIYETKLPSGVSIWGHTGGILGFTTFV 353
>gi|75761366|ref|ZP_00741339.1| Beta-lactamase family protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491132|gb|EAO54375.1| Beta-lactamase family protein [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 366
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 32/190 (16%)
Query: 45 YSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDK-- 102
Y+N +SYIVE I+ Q + YV EH+ EPL M++T N V + + D
Sbjct: 80 YNNLMYTTISYIVENITNQTWEQYVTEHILEPLNMNQT--------NFSVTDSQTTDDYA 131
Query: 103 --GYDDQGKLLGDTPFKLWMYPVGGAVG----TLGDLQKFAQALLERKTLFHR----PET 152
+++GK + + PF GA G T+ D+ + L + + E
Sbjct: 132 LPYVENEGK-IKEVPFH--NIDTVGAAGCINSTIEDMANWVLLHLNKGKFGNHELISSEL 188
Query: 153 WTELYSTTSTHPGTDIVR------NAHG---FWASHYGVTLLGHSGNADGFSSYLYLDLK 203
++Y+ ++ P ++ N++G F +++ G ++ H GN DGFS+ +
Sbjct: 189 LQQMYTPHNSIPDQPVLSLPESPLNSYGLGWFISAYRGNKVIHHGGNIDGFSALVSFIPT 248
Query: 204 NGIGQVILTN 213
IG VILTN
Sbjct: 249 ENIGLVILTN 258
>gi|119875489|ref|ZP_01642555.1| beta-lactamase [Stenotrophomonas maltophilia R551-3]
gi|119822031|gb|EAX24623.1| beta-lactamase [Stenotrophomonas maltophilia R551-3]
Length = 476
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 15/146 (10%)
Query: 3 LMNHQAGF-----DEMPLYKKGDKS--DLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSY 55
L+ H +G D+ Y ++ D ++F P F PG+ SYSN+ ++
Sbjct: 252 LLTHTSGLGDFFGDDFESYSASLRTLDDYVQRFAKDSP--QFTPGSQDSYSNYGFIVLGR 309
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTP 115
I+E +SGQ Y YV +H+ P M T P+ V ++ G+ + +T
Sbjct: 310 IIEAVSGQSYYAYVEQHILRPAGMTGTGFEPET-----VNVPQRAVAYTKKNGQWIRETK 364
Query: 116 FKLWM-YPVGGAVGTLGDLQKFAQAL 140
W GG T+ D+ KFA+AL
Sbjct: 365 SLPWRGMSAGGGYSTVADMVKFAEAL 390
>gi|70725621|ref|YP_252535.1| hypothetical protein SH0620 [Staphylococcus haemolyticus JCSC1435]
gi|68446345|dbj|BAE03929.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 494
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 39 PGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKR 98
PG Y+N + ++ IV+ IS Y+ Y+ EH+F+PL M +S ++
Sbjct: 181 PGEQFEYANMNYDILGLIVQNISHSPYSSYMSEHIFKPLNMKH------ISTKESNKKGG 234
Query: 99 KEDKGYDDQ-GKLLGDTP-FKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTEL 156
+ +GYD Q K D P F + P + + DL+ + + L H P+ L
Sbjct: 235 DDAQGYDIQHNKAYSDNPKFNIGDNPAAYLMASTHDLEPWIKFQL------HPPKHLKSL 288
Query: 157 YSTT-----STHPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVIL 211
TT T+ D F TL+ H G + +SSY+ L+ K G V+L
Sbjct: 289 VETTHKPKVKTNDDDDSQYATGWFVTKDNQETLIYHPGTLENYSSYIILNPKKDYGIVVL 348
Query: 212 TNQLYEQVYNVQMPEL 227
N Y+ P L
Sbjct: 349 GN-----AYSSHTPTL 359
>gi|47568609|ref|ZP_00239307.1| beta-lactamase [Bacillus cereus G9241]
gi|47554705|gb|EAL13058.1| beta-lactamase [Bacillus cereus G9241]
Length = 388
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 57/217 (26%), Positives = 92/217 (42%), Gaps = 37/217 (17%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ----------SFEPGTTTSYSNFSTAL 52
L+NH +G E Y K +D+ + Y + F PG SYSN +
Sbjct: 150 LLNHTSGIAE---YLKSKDADIMNSKKTYTAEEIVKIGLALPPDFSPGKGWSYSNTGYVI 206
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY---DDQGK 109
+ ++E+I+G YA+ + + + EPL++ T L N+ V + +GY D+ +
Sbjct: 207 LGMLIEKITGNSYAEEIEKRIIEPLDLSNTF----LPGNSPVIPGKNHARGYMKIDETSE 262
Query: 110 LLGDTPFKLWMY-PVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHP--GT 166
L T + + G + DL KF +LL K L R EL +T P G
Sbjct: 263 LKDMTYYNPSLANSAGDMISDADDLNKFFSSLLGGKLLKER-----ELKEMLTTVPVEGK 317
Query: 167 DIVRNAHGFWASHY------GVTLLGHSGNADGFSSY 197
+ G+ Y GV++ GH G+ GF ++
Sbjct: 318 GV---GDGYGLGIYETKLPNGVSVWGHGGSIPGFMTF 351
>gi|152976453|ref|YP_001375970.1| beta-lactamase [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|152025205|gb|ABS22975.1| beta-lactamase [Bacillus cereus subsp. cytotoxis NVH 391-98]
Length = 376
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F GT Y++++ +++YIVE IS + +Y+ E++F P EM + + NA E
Sbjct: 190 FPAGTGWRYTDYNYMVLAYIVETISQRPLGEYIKENIFGPAEMHESGM-----GNAMPGE 244
Query: 97 KRKEDKGYDDQGKLLGDTPFKL---WMYPVGGAVGTLGDLQKFAQALLERKTL 146
+ KGY Q LL P KL W+Y G T+GD++K +A++ K L
Sbjct: 245 QHLA-KGYKKQDNLLVLAP-KLGMDWLYGCGEMYTTVGDMKKLDEAIINGKLL 295
>gi|30021230|ref|NP_832861.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29896784|gb|AAP10062.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 385
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 27/210 (12%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G + K D D ++ + + ++ F PG SYSN L+
Sbjct: 152 ILNHTSGIADYVNSKDFDIMDTKKSYTAEEFVKMGISLPPDFAPGKGWSYSNTGYVLLGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGD 113
++E+++G YA+ V + EPL++ T L N+ V K +GY + L D
Sbjct: 212 LIEKVTGNSYAEEVENRIIEPLDLSNTF----LPGNSSVIPGTKHARGYLQINGASELKD 267
Query: 114 TPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
+ G + T DL KF LL K L + + ++ +T T+ R
Sbjct: 268 VTYINPGSSDGDMISTADDLNKFFSCLLGGKLL--KEQQLKQMLTTVPTN------REGT 319
Query: 174 GFWAS------HYGVTLLGHSGNADGFSSY 197
G+ GV++ GH G GFS++
Sbjct: 320 GYGLGILEIKLPNGVSVWGHRGAVPGFSTF 349
>gi|120404007|ref|YP_953836.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
PYR-1]
gi|119956825|gb|ABM13830.1| Serine-type D-Ala-D-Ala carboxypeptidase [Mycobacterium vanbaalenii
PYR-1]
Length = 406
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/198 (26%), Positives = 79/198 (39%), Gaps = 30/198 (15%)
Query: 27 QFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRT---- 82
+F QP F PG YSN +T L+ +VE++SGQ DY+ H+ PL M T
Sbjct: 197 EFAFSQP-PMFAPGDGYHYSNTNTVLLGLVVEKVSGQSLGDYIRRHISAPLGMAETSFPT 255
Query: 83 -AILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALL 141
A P Y + DD+ D W + G V TL DL+ +A AL+
Sbjct: 256 DATFPGPHATGYTVQPP------DDREMTATDWNLS-WSWAAGNMVSTLHDLRIWAPALV 308
Query: 142 ERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGFWASHYGVTL------LGHSGNADGFS 195
L + + +S P + YG+ + +GH+G+ G+
Sbjct: 309 TGTLLSRQMQQQRLQMVESSGQPAPE-----------EYGLGMFNVAGWIGHNGSVPGYQ 357
Query: 196 SYLYLDLKNGIGQVILTN 213
+ + VILTN
Sbjct: 358 TVSVYLPERQTALVILTN 375
>gi|49479259|ref|YP_037586.1| possible beta-lactamase [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|49330815|gb|AAT61461.1| possible beta-lactamase [Bacillus thuringiensis serovar konkukian
str. 97-27]
Length = 377
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F GT Y++++ +++YIVE+I+ + A+YV E++F P+EM + + L ++ ++ E
Sbjct: 190 FPAGTGWKYTDYNYMVLAYIVEKITNKPLAEYVKENIFTPVEMHESGMGATLPEDIFLAE 249
Query: 97 KRKEDKGYDDQGKLLGDTP-FKL-WMYPVGGAVGTLGDLQKFAQALLERKTL 146
GY + L P K+ W+Y G T+ D+++ +A++ K L
Sbjct: 250 ------GYTKKDNELIAAPRLKMNWLYGCGEMYTTVEDMKRLDEAIMNGKLL 295
>gi|111023881|ref|YP_706853.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus sp. RHA1]
gi|110823411|gb|ABG98695.1| serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus sp. RHA1]
Length = 378
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 26/186 (13%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAI-----LPDLSDN 91
F PGT YSN +TAL+ +VE++SGQ ++ E + P + T++ LP +
Sbjct: 180 FTPGTEFDYSNTNTALLGLVVEKVSGQPLNAFIDEFITRPENLGHTSVPTDAALPSPHAH 239
Query: 92 AYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPE 151
Y ++ E D W + G + TL DL+ + + L L +
Sbjct: 240 GYTKKTDGETVDATDWN--------PSWGFGAGNMISTLDDLRGWVRDLATGTLLSPATQ 291
Query: 152 TWTELYSTTSTHPGTDI----VRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIG 207
E + + + V N +G+ +GH+GN G+ +Y Y G
Sbjct: 292 REREQFQPAPSEGAGSLYGLGVENQNGW---------IGHNGNIAGYQTYAYYLPPEGKT 342
Query: 208 QVILTN 213
V+L N
Sbjct: 343 VVMLVN 348
>gi|94971069|ref|YP_593117.1| beta-lactamase [Acidobacteria bacterium Ellin345]
gi|94553119|gb|ABF43043.1| beta-lactamase [Acidobacteria bacterium Ellin345]
Length = 361
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 36/188 (19%)
Query: 36 SFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPD---LSDNA 92
+FEPGT +YSN ++ ++E++SGQ Y DYV EH+ + L M+ T S+ A
Sbjct: 178 AFEPGTKEAYSNGGFVVLGAVIEKVSGQSYYDYVREHICKRLGMESTDFYEADGMTSNLA 237
Query: 93 YVQEKRKEDKGYDDQGKLLGDTPFKLWMYP-----VGGAVGTLGDLQKFAQALLERKTLF 147
+ ED DD G + ++ P GG T DL K A AL RK
Sbjct: 238 TGYTSQTED---DDHGPRRNN----IYTRPARGSSAGGGYSTARDLLKLANALEARKL-- 288
Query: 148 HRPETWTELYSTTSTHP--GTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNG 205
T+P D+ + A +A+ G G +G A G ++ + L G
Sbjct: 289 --------------TNPVFAPDVPKPADMPFAALRGT---GIAGGAPGINADMESSLPGG 331
Query: 206 IGQVILTN 213
++L+N
Sbjct: 332 YTVIVLSN 339
>gi|88806039|ref|ZP_01121557.1| beta-lactamase precursor [Robiginitalea biformata HTCC2501]
gi|88783648|gb|EAR14819.1| beta-lactamase precursor [Robiginitalea biformata HTCC2501]
Length = 363
Score = 56.6 bits (135), Expect = 3e-06, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 74/157 (47%), Gaps = 19/157 (12%)
Query: 3 LMNHQAG---FDEMPLYKKGDKSDLEEQ----FRDYQPIQSFEPGTTTSYSNFSTALVSY 55
L+NH +G F M + + DL Q F +P+ F+PGT Y+N L+ Y
Sbjct: 129 LLNHTSGIKDFTSMRSIMEIARKDLRPQELIDFFKNEPM-DFKPGTQFKYNNSGYVLLGY 187
Query: 56 IVERISGQKYADYVHEHVFEPLEM--DRTAILPDLSDN-AYVQEKRKEDKGYDDQGKLLG 112
I+E++SG+ Y +Y+ +F P M R A ++ N AY R KGY ++ +
Sbjct: 188 IIEKVSGKSYEEYIESELFTPAGMTDSRYAHYREIVPNRAYGYHNR---KGYTNKLHISM 244
Query: 113 DTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHR 149
+ P Y G + + DL K+ +AL K + R
Sbjct: 245 NIP-----YASGALMASSDDLLKWQRALQTEKLVTRR 276
>gi|89206521|ref|ZP_01185078.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
gi|89155521|gb|EAR75532.1| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus
weihenstephanensis KBAB4]
Length = 389
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 36/215 (16%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
++NH +G E K D +D ++ + + ++ F PG SYSN L+
Sbjct: 152 ILNHTSGIAEYSRSKDADFTDTKKSYTAEELVKMGISLPPDFAPGKGWSYSNTGYVLLGI 211
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY--DDQGKLLGD 113
++E+++G YA+ + + EPLE+ T L N+ V K +GY D L D
Sbjct: 212 LIEKVTGNSYAEEIESRIIEPLELSNTF----LPGNSSVIPGTKHARGYVQPDGVSELKD 267
Query: 114 TPFKLWMYPVGGA-----VGTLGDLQKFAQALLERKTLFHRPETWTELYSTTST-HPGTD 167
+ P G+ + T DL KF LL K L + + ++ +T T G D
Sbjct: 268 VTY---YNPSAGSSAGDMISTADDLNKFFSYLLGGKLL--KAQQLKQMLTTVPTGKEGID 322
Query: 168 IVRNAHGFWASHY------GVTLLGHSGNADGFSS 196
G+ Y V++ GH+G GF++
Sbjct: 323 ------GYGLGIYETKLQNDVSIWGHTGGILGFTT 351
>gi|30263450|ref|NP_845827.1| penicillin-binding protein, putative [Bacillus anthracis str. Ames]
gi|47528838|ref|YP_020187.1| penicillin-binding protein, putative [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186299|ref|YP_029551.1| penicillin-binding protein, putative [Bacillus anthracis str.
Sterne]
gi|65320777|ref|ZP_00393736.1| COG1680: Beta-lactamase class C and other penicillin binding
proteins [Bacillus anthracis str. A2012]
gi|30258085|gb|AAP27313.1| penicillin-binding protein, putative [Bacillus anthracis str. Ames]
gi|47503986|gb|AAT32662.1| penicillin-binding protein, putative [Bacillus anthracis str. 'Ames
Ancestor']
gi|49180226|gb|AAT55602.1| penicillin-binding protein, putative [Bacillus anthracis str.
Sterne]
Length = 377
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F GT Y++++ +++YIVE+I+ + A+YV E++F P+EM + + L ++ ++ E
Sbjct: 190 FPAGTGWKYTDYNYMVLAYIVEKITNKPLAEYVKENIFTPVEMHESGMGATLPEDIFLAE 249
Query: 97 KRKEDKGYDDQGKLLGDTP-FKL-WMYPVGGAVGTLGDLQKFAQALLERKTL 146
GY + L P K+ W+Y G T+ D+++ +A++ K L
Sbjct: 250 ------GYTRKDNELIAAPRLKMNWLYGCGEMYTTVEDMKRLDEAIMNGKLL 295
>gi|52142035|ref|YP_084794.1| possible beta-lactamase [Bacillus cereus E33L]
gi|51975504|gb|AAU17054.1| possible beta-lactamase [Bacillus cereus E33L]
Length = 377
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F GT Y++++ +++YIVE+I+ + A+YV E++F P+EM + + L ++ ++ E
Sbjct: 190 FPAGTGWKYTDYNYMVLAYIVEKITNKPLAEYVKENIFTPVEMHESGMGATLPEDIFLAE 249
Query: 97 KRKEDKGYDDQGKLLGDTP-FKL-WMYPVGGAVGTLGDLQKFAQALLERKTL 146
GY + L P K+ W+Y G T+ D+++ +A++ K L
Sbjct: 250 ------GYTRKDNELIAAPRLKMNWLYGCGEMYTTVEDMKRLDEAIMNGKLL 295
>gi|118478754|ref|YP_895905.1| possible beta-lactamase [Bacillus thuringiensis str. Al Hakam]
gi|118417979|gb|ABK86398.1| possible beta-lactamase [Bacillus thuringiensis str. Al Hakam]
Length = 377
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 37 FEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQE 96
F GT Y++++ +++YIVE+I+ + A+YV E++F P+EM + + L ++ ++ E
Sbjct: 190 FPAGTGWKYTDYNYMVLAYIVEKITNKPLAEYVKENIFTPVEMHESGMGATLPEDIFLAE 249
Query: 97 KRKEDKGYDDQGKLLGDTP-FKL-WMYPVGGAVGTLGDLQKFAQALLERKTL 146
GY + L P K+ W+Y G T+ D+++ +A++ K L
Sbjct: 250 ------GYTRKDNELIAAPRLKMNWLYGCGEMYTTVEDMKRLDEAIMNGKLL 295
>gi|148358698|ref|YP_001249905.1| serine-type D-Ala-D-Ala carboxypeptidase [Legionella pneumophila
str. Corby]
gi|148280471|gb|ABQ54559.1| serine-type D-Ala-D-Ala carboxypeptidase [Legionella pneumophila
str. Corby]
Length = 371
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 33/195 (16%)
Query: 31 YQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSD 90
Y F+PGT YSN + L+ I+E I+G+ YA+ + +++ +PL + T I D
Sbjct: 176 YDQKPDFKPGTAYEYSNTNYLLLQLIIENITGESYAESIKKYILKPLRLKNTYIEKQEFD 235
Query: 91 NAY---------VQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALL 141
N + +++ + D D G L D GG + T D+ F QALL
Sbjct: 236 NDHHYLSTHGYTLEDGKVVDVTDHDDGFGLAD----------GGIISTAEDINIFVQALL 285
Query: 142 ERKTLFHRPETWTELYSTTSTHPGTDIVR---NAHGFWASHYGVTLLGHSGNADGFSSYL 198
+ K L P T + + + G I R N W+ H+G + G+
Sbjct: 286 KDKILL-SPNYLTMMLTFPDDY-GFGIGREEINGEIAWS---------HNGASSGYQGQY 334
Query: 199 YLDLKNGIGQVILTN 213
Y + VILTN
Sbjct: 335 YYFPDRQLTVVILTN 349
>gi|47093833|ref|ZP_00231578.1| peptidase, putative [Listeria monocytogenes str. 4b H7858]
gi|153202909|ref|ZP_01944347.1| hypothetical protein LMSG_01123 [Listeria monocytogenes HPB2262]
gi|47017800|gb|EAL08588.1| peptidase, putative [Listeria monocytogenes str. 4b H7858]
gi|133734979|gb|EBA36677.1| hypothetical protein LMSG_01123 [Listeria monocytogenes HPB2262]
Length = 335
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 24/228 (10%)
Query: 1 LDLMNHQAGFDE-MPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVER 59
L L+ H +G + +P + ++ D+ Y Q PGT +Y++ + L+ Y++ +
Sbjct: 101 LHLLTHSSGLAQNIPNFSMNNREDVIRYV--YATPQINIPGTVVTYADANFLLLGYLISK 158
Query: 60 ISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDT-PFKL 118
+ G Y + ++ EPL M T+ P E + +G + GD FK
Sbjct: 159 MDGN-YEKAIQNNILEPLSMTNTSFHPANKKQVIPTELDQT------RGLIQGDVHDFKA 211
Query: 119 WMYPVG----GAVGTLGDLQKFAQAL-LERKTLFHRPETWTELYSTTSTHPGTDIVRNAH 173
W G G TL DL KF AL L+ +TW +L T PG + R
Sbjct: 212 WTAKSGTGHAGLFSTLSDLSKFRDALMLQHGAPILSEKTW-QLMQINHT-PGLNRSR--- 266
Query: 174 GFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYN 221
G G ++L H+G +++ LDLK+ ++L+N+++ N
Sbjct: 267 GLGWDLRGDSVLYHTGFT---GTFMVLDLKHQASLIVLSNRVHPSRAN 311
>gi|30021128|ref|NP_832759.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
gi|29896681|gb|AAP09960.1| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579]
Length = 388
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 56/214 (26%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ----------SFEPGTTTSYSNFSTAL 52
L+NH +G E Y K +D+ + Y + F PG YSN +
Sbjct: 150 LLNHTSGIAE---YLKSKDADIMNSKKTYTAEEIVKIGLSLPPDFSPGKDWLYSNTGYVI 206
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY---DDQGK 109
+ ++E+I+G YA+ + + + EPL++ T L N+ V + +GY + G+
Sbjct: 207 LGMLIEKITGNSYAEEIEKRIIEPLDLSNTF----LPGNSPVIPGKNHARGYVKMEGTGE 262
Query: 110 LLGDTPFKLWMYPVGG-AVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHP-GTD 167
L T + + G + DL KF +LL K L R EL +T P
Sbjct: 263 LKDITYYNPSLANAAGDMISNADDLNKFFSSLLGGKLLKER-----ELKEMLTTVPIEGK 317
Query: 168 IVRNAHGFWASHY----GVTLLGHSGNADGFSSY 197
V +A+G GV++ GH G GF+++
Sbjct: 318 GVGDAYGLGIYETKLPNGVSVWGHGGGIPGFTTF 351
>gi|148554735|ref|YP_001262317.1| beta-lactamase [Sphingomonas wittichii RW1]
gi|148499925|gb|ABQ68179.1| beta-lactamase [Sphingomonas wittichii RW1]
Length = 513
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 51/179 (28%), Positives = 72/179 (40%), Gaps = 17/179 (9%)
Query: 39 PGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDN----AYV 94
PG YSN L+ Y ERI GQ +A + V + L M TA P + D
Sbjct: 138 PGAHFWYSNLGYQLLGYAAERIEGQPFALVLKRRVLDRLGMAATA--PQIDDRLRGRIAT 195
Query: 95 QEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWT 154
R D Y P+ ++ G V T GD+ +A+ LL R
Sbjct: 196 SYARSPDGSYHQ-------APWFPYLAADGAIVSTAGDMASYARMLLARGDAPGGRLISA 248
Query: 155 ELYSTTSTHPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
++ +T D +G G +L HSG+ GF +YL +DL G+ V+L N
Sbjct: 249 RAFARLATARLDDY---GYGLEVRDQG-RVLAHSGSIAGFQAYLNVDLGQGVAVVLLGN 303
>gi|27468925|ref|NP_765562.1| beta-lactamase [Staphylococcus epidermidis ATCC 12228]
gi|27316473|gb|AAO05648.1|AE016750_253 beta-lactamase [Staphylococcus epidermidis ATCC 12228]
Length = 505
Score = 56.2 bits (134), Expect = 4e-06, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 14/186 (7%)
Query: 39 PGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKR 98
PG T YSN + ++ I++ ++ Q Y Y+ +HV PL+M T + + +
Sbjct: 185 PGETFEYSNMNYDILGLIIQNVTHQSYTSYIQKHVLAPLKMKHTTFKVNNT------KSN 238
Query: 99 KEDKGY--DDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRP---ETW 153
E GY +D + F + P + + DL K+ Q + + ++
Sbjct: 239 NEALGYIWEDNENKVAQPEFNIGDTPAAYMMSSTSDLAKWVQLQIHPTSKSQAKLIRQSH 298
Query: 154 TELYSTTSTHPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
L ++ ++ P D + W + L+ H+G D FSS + L+++ G V+L N
Sbjct: 299 QVLSNSLNSEPNADSYGSG---WFINTDDHLVFHTGVLDNFSSQILLNIRKSYGIVVLAN 355
Query: 214 QLYEQV 219
QV
Sbjct: 356 TNSNQV 361
>gi|52142220|ref|YP_084609.1| alkaline D-peptidase and alkaline D-peptidase fusion [Bacillus
cereus E33L]
gi|51975689|gb|AAU17239.1| alkaline D-peptidase and alkaline D-peptidase fusion [Bacillus
cereus E33L]
Length = 720
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 55/207 (26%), Positives = 94/207 (45%), Gaps = 25/207 (12%)
Query: 3 LMNHQAGFDEMPLYKKGDKSD--LEEQFRDYQPIQ------SFEPGTTTSYSNFSTALVS 54
L+NH +G + Y D + +E +Y Q EP SYSN + ++
Sbjct: 140 LLNHTSGIAD---YLTSDLKEKLMENPSENYTAEQLISRALQLEPVKGWSYSNTNMVIIG 196
Query: 55 YIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQG-KLLGD 113
I+++++G+ YA+ + + + PL + T +LP S + +K +GY + G KL+
Sbjct: 197 LIIQKVTGESYAEQIQKRIINPLSLKET-VLPGSS----MDIPKKNARGYLNTGDKLVDI 251
Query: 114 TPFKLWMYPVGGAVGTLG-DLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNA 172
T F G + + G D+ F +ALL K L PE E+ + T P + +
Sbjct: 252 TLFNPSFANASGEMISTGEDMTTFFRALLGGKLL--TPEMQKEMVTHTVDTP---LGKYG 306
Query: 173 HGFWASHY--GVTLLGHSGNADGFSSY 197
G A+ G + GH G GF+++
Sbjct: 307 LGIHATKLPDGTEVWGHGGGIPGFTNF 333
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 36/245 (14%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDL---EEQFRDYQPIQ----------SFEPGTTTSYSNFS 49
L+NH +G + Y D D+ + FR Y + F PG YSN +
Sbjct: 486 LLNHTSG---IAAYTDLDMRDITLPQNPFRYYSTDELISLALAKPPVFAPGEGWDYSNTN 542
Query: 50 TALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGK 109
T + I+ +++G YA+ + + EPL + T + + ++++ K D G+
Sbjct: 543 TVIAGEIIRKVTGDTYAEQIRKRFIEPLGLKETFV---MEASSHILGKHANGYNMDRSGR 599
Query: 110 LLGDTPF-KLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDI 168
L T + W G V T+ DL F ALL K L EL + T + I
Sbjct: 600 LYDLTEINQSWANAAGDMVSTVEDLTTFFSALLGGKLLNQ------ELMNQMLTTVDSPI 653
Query: 169 VRNAHGFWASHY--GVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYNVQMPE 226
+ G + G + GH+G GF + +G I + N PE
Sbjct: 654 GKVGLGVYEEKTPDGQSYWGHAGGTFGFETR--------VGGPIGGEHILVTAINAVGPE 705
Query: 227 LIFGK 231
+I G+
Sbjct: 706 VITGR 710
>gi|57865382|ref|YP_189575.1| fmtA-like protein [Staphylococcus epidermidis RP62A]
gi|57636040|gb|AAW52828.1| fmtA-like protein [Staphylococcus epidermidis RP62A]
Length = 505
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 14/186 (7%)
Query: 39 PGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKR 98
PG T YSN + ++ I++ ++ Q Y Y+ +HV PL+M T + + +
Sbjct: 185 PGETFEYSNMNYDILGIIIQNVTHQSYTSYIQKHVLAPLKMKHTTFKVNNT------KSN 238
Query: 99 KEDKGY--DDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERKTLFHRP---ETW 153
E GY +D + F + P + + DL K+ Q + + ++
Sbjct: 239 NEALGYIWEDNENKVAQPEFNIGDTPAAYMMSSTSDLAKWVQLQIHPTSKSQAKLIRQSH 298
Query: 154 TELYSTTSTHPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
L ++ ++ P D + W + L+ H+G D FSS + L+++ G V+L N
Sbjct: 299 QVLSNSLNSEPNADSYGSG---WFINTDDHLVFHTGVLDNFSSQILLNIRKSYGIVVLAN 355
Query: 214 QLYEQV 219
QV
Sbjct: 356 TNSNQV 361
>gi|68231372|ref|ZP_00570541.1| Beta-lactamase [Frankia sp. EAN1pec]
gi|68200965|gb|EAN15168.1| Beta-lactamase [Frankia sp. EAN1pec]
Length = 467
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 13/188 (6%)
Query: 31 YQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSD 90
++P G YSN AL+ +V R+ GQ + D +HE V PL + RT + P
Sbjct: 148 HEPAVRHPAGRRFHYSNPGFALLGALVSRLRGQPWGDALHEEVLAPLGLTRTTLSP---- 203
Query: 91 NAYVQEKRKEDKGYDDQGKLLGDTPFKLW--MYPVGGAVGTLGDLQKFAQALLERKTLFH 148
Q G ++ P + M P G T DL ++A L +
Sbjct: 204 ----QAPHAGGFGVHPWADVMVPEPLEDTGVMAPAGQLWSTAADLSRWAAFLAQGDKAVL 259
Query: 149 RPETWTELYSTTSTHPGTDIVRNAHGF---WASHYGVTLLGHSGNADGFSSYLYLDLKNG 205
+T E+ S D A+G G L GH+G+ GF + L + ++
Sbjct: 260 SADTLAEMRQPASGPDEADDWATAYGLGLHLRRQNGRLLYGHNGSMPGFLATLLVSQRDD 319
Query: 206 IGQVILTN 213
+ V+L N
Sbjct: 320 VAAVVLAN 327
>gi|124006877|ref|ZP_01691707.1| beta-lactamase [Microscilla marina ATCC 23134]
gi|123987558|gb|EAY27267.1| beta-lactamase [Microscilla marina ATCC 23134]
Length = 532
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 26/194 (13%)
Query: 31 YQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSD 90
+QP +F PG YSN + L+ +IV ++SGQ ++ H+H+FEPL M T ++
Sbjct: 137 HQPDLNFVPGDEERYSNSNYLLLGHIVTQVSGQSLREFAHQHIFEPLGMHNTHFHDSFAE 196
Query: 91 ------NAYVQEKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQALLERK 144
Y+ + + + + + ++GD GG T+ DL ++ Q + +
Sbjct: 197 ITPHKAVGYLPDPKGGYQEFTSKIDVVGD----------GGLYTTIEDLTRWDQNFYDNQ 246
Query: 145 TLFHRPETWTELYSTTSTHPG--TDIVRNAHGF---WASHYGVTLLGHSGNADGFSSYLY 199
P+ +L T PG D +GF +H G T+ H G G+ + L
Sbjct: 247 LGKQNPDL-IKLMGT----PGRLNDDTAFEYGFGLILGNHQGKTVQRHGGAFAGYCAELL 301
Query: 200 LDLKNGIGQVILTN 213
K + ++L N
Sbjct: 302 RFPKEKLSVIVLAN 315
>gi|111017221|ref|YP_700193.1| probable serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus sp.
RHA1]
gi|110816751|gb|ABG92035.1| probable serine-type D-Ala-D-Ala carboxypeptidase [Rhodococcus sp.
RHA1]
Length = 427
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 55/216 (25%), Positives = 90/216 (41%), Gaps = 32/216 (14%)
Query: 24 LEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTA 83
LE FR + P F PGT+ YSN + AL+ I E++ G+ + + +F PL + T
Sbjct: 180 LEIAFR-HPP--EFPPGTSYEYSNTNYALLGLIAEKVGGRPLTEQFRDRLFGPLGLQHT- 235
Query: 84 ILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLWMY---------------------- 121
+LP +D A + ++ Y + + D + M
Sbjct: 236 LLPAAADAATIPDRYSHGYMYGESSFAMVDEEYPADMQAAARAGTLQPLDYTNQNSSYAT 295
Query: 122 PVGGAVGTLGDLQKFAQALLERKTLFHR-PETWTELYSTTSTHPGT-DIVRNAHGFWASH 179
GGA+ T D+ + +AL+ L + W L+S P T D + +G
Sbjct: 296 AAGGAISTADDMTAWIRALVSGNVLNSEYQQQW--LHSLQPEDPSTPDGQQYGYGISYQR 353
Query: 180 YG--VTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
+G ++ H G GF+S++ D N + VI TN
Sbjct: 354 FGPNASMYYHGGELPGFNSFIGYDPDNDVTLVIWTN 389
>gi|54297074|ref|YP_123443.1| hypothetical protein lpp1119 [Legionella pneumophila str. Paris]
gi|53750859|emb|CAH12270.1| hypothetical protein [Legionella pneumophila str. Paris]
Length = 371
Score = 55.8 bits (133), Expect = 6e-06, Method: Composition-based stats.
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 35/196 (17%)
Query: 31 YQPIQSFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPD--- 87
Y F+PGT YSN + L+ I+E ++G+ YA+ + +++ +PL + T I
Sbjct: 176 YDQKPDFKPGTAYEYSNTNYLLLQLIIENLTGESYAESIKKYILKPLRLKNTYIEKQEFD 235
Query: 88 -----LSDNAYVQEKRK--EDKGYDDQGKLLGDTPFKLWMYPVGGAVGTLGDLQKFAQAL 140
LS + Y E K + YDD G L D GG + T D+ F QAL
Sbjct: 236 DDHHYLSTHGYTLEDGKVVDITDYDD-GFGLAD----------GGIISTAEDINIFVQAL 284
Query: 141 LERKTLFHRPETWTELYSTTSTHPGTDIVR---NAHGFWASHYGVTLLGHSGNADGFSSY 197
L+ K L P T + + + G I R N W+ H+G + G+
Sbjct: 285 LKDKILL-SPNYLTMMLTFPDDY-GFGIGREEINGEIAWS---------HNGASSGYQGQ 333
Query: 198 LYLDLKNGIGQVILTN 213
Y + VILTN
Sbjct: 334 YYYFPDRQLTVVILTN 349
>gi|88806041|ref|ZP_01121559.1| Beta-lactamase [Robiginitalea biformata HTCC2501]
gi|88783650|gb|EAR14821.1| Beta-lactamase [Robiginitalea biformata HTCC2501]
Length = 429
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 36 SFEPGTTTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQ 95
+F PG+ SYSN +++ I+E I+G+ + +V +FEPL M+ T I P+ + V
Sbjct: 118 NFPPGSQFSYSNTGYVVLARILENINGEAFDQWVRSRIFEPLGMENTTIEPNYQN---VV 174
Query: 96 EKRKEDKGYDDQGKLLGDTPFKLWMYPVGGAVGT-LGDLQKFAQALLERKTLFHRPET-W 153
R + +P+ W Y G + T +GDL + + F+ P+ W
Sbjct: 175 PMRATSYYHSHDTVYERASPY--WGYTGAGNMYTSVGDLLSWTRN-------FYDPQDGW 225
Query: 154 TELY-STTSTHPGTDIVRNAHGFWA---SHYGVTLLGHSGNADGFSSYLYLDLKNGIGQV 209
+ + TS P + N +GF G + H+G G+ S++ + KN + V
Sbjct: 226 AHRFQALTSLDPLLNGEPNLYGFGVFVDRQKGRDRIQHAGVIGGYRSFVAIYPKNHLNIV 285
Query: 210 ILTN 213
IL+N
Sbjct: 286 ILSN 289
>gi|150018518|ref|YP_001310772.1| beta-lactamase [Clostridium beijerinckii NCIMB 8052]
gi|149904983|gb|ABR35816.1| beta-lactamase [Clostridium beijerinckii NCIMB 8052]
Length = 481
Score = 55.5 bits (132), Expect = 7e-06, Method: Composition-based stats.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 42 TTSYSNFSTALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKED 101
T Y+N A Y+VE ++G + ++V + EPL M+ T D+ +++
Sbjct: 154 TWQYNNLMYATAGYLVELVTGMTWEEFVKSRILEPLGMNSTNFSVDV-----LKKSSDYS 208
Query: 102 KGYDDQGKLLGDTPFKLW--MYPVGGAVGTLGDLQKF-----------AQALLERKTL-- 146
K Y +G+ + F+ + P G +L D+ K+ + ++ KT+
Sbjct: 209 KPYAQKGEEINQIDFRKLDSVAPAGSMNSSLTDMLKWLNLHLNKGKVNGKQIISEKTISE 268
Query: 147 FHRPETWTELYSTTSTHPGTDIVRNAHGFWASHY-GVTLLGHSGNADGFSSYLYLDLKNG 205
H P+ EL A G++ Y G + H GN DGF SY +
Sbjct: 269 LHSPQLPCELIPLKFDE--LQFSSYALGWFVEAYRGRKHVNHGGNIDGFCSYTSFLPDDN 326
Query: 206 IGQVILTN 213
IG VILTN
Sbjct: 327 IGVVILTN 334
>gi|124008674|ref|ZP_01693364.1| beta-lactamase [Microscilla marina ATCC 23134]
gi|123985750|gb|EAY25623.1| beta-lactamase [Microscilla marina ATCC 23134]
Length = 401
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 57/237 (24%), Positives = 96/237 (40%), Gaps = 32/237 (13%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQP--------IQSF-----EPGTTTSYSNFS 49
L+ H +G L++ + D + DY+P I + +PG YSNF+
Sbjct: 138 LITHTSGISRGKLWQYDNYYDAQ----DYKPTGWSQVAAILPYCKIVRKPGAKLVYSNFA 193
Query: 50 TALVSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGK 109
L+ IVE +SG Y +Y+++++F PL+M + A + G D K
Sbjct: 194 YVLLGRIVENVSGDVYVNYINKNIFLPLKMYSAHFGKSPAHLANYKSWSYTKYGKDSTFK 253
Query: 110 LLGDTPFKLWMYPVGGAVGTLGDLQKFAQALL--------ERKTLFHRPETWTELYSTT- 160
++ + P GG + DL K+A L + L + ++ E++S
Sbjct: 254 VIQPEHNRGAYNPAGGFYSNILDLVKYANFLCGVGNAQDRQNFNLVLKSKSLKEMFSPQI 313
Query: 161 ----STHPGTDIVRNAHGFWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTN 213
S D+ + + F + +L GN GF SYLY D +I+ N
Sbjct: 314 KIIDSQGQRLDMTLSFYSF--KYNNKDILYKDGNQFGFRSYLYFDTSTNTSAIIVFN 368
>gi|91217076|ref|ZP_01254038.1| beta-lactamase family protein [Psychroflexus torquis ATCC 700755]
gi|91184676|gb|EAS71057.1| beta-lactamase family protein [Psychroflexus torquis ATCC 700755]
Length = 585
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 60/245 (24%), Positives = 94/245 (38%), Gaps = 62/245 (25%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ----------SFEPGTTTSYSNFSTAL 52
L+ H +G +P Y K +E Y P + F PG SYSN L
Sbjct: 131 LLTHTSG---IPNYTAFPKFMEDESRNPYTPEEFVKTFSDKALDFTPGEKFSYSNSGYFL 187
Query: 53 VSYIVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLL- 111
+ ++E+++G+ Y + + +F PL M +D GYD+ G +L
Sbjct: 188 LGVLIEKLAGKSYEQMLQDKIFIPLSM--------------------KDSGYDNHGDILK 227
Query: 112 ----------GDTPFKLWM-----YPVGGAVGTLGDLQKFAQALLERKTLFHRPETWTEL 156
GD ++ Y G T+ DL K+ QAL L P+ + +
Sbjct: 228 NRATGYEKQGGDYVNSSYLDMSIPYAAGSIYSTVEDLYKWDQALYTTSIL---PKEYMTM 284
Query: 157 YSTTSTHPGTDIVRNAHGFWASHYG--------VTLLGHSGNADGFSSYLYLDLKNGIGQ 208
Y PG D + A+G W Y + +GH G +GF++ + N
Sbjct: 285 YFKPHI-PGFDNLHYAYG-WIVGYAKIGKSTDSIYAMGHGGGINGFNTNISRTTSNNSLV 342
Query: 209 VILTN 213
V+L N
Sbjct: 343 VLLNN 347
>gi|116873351|ref|YP_850132.1| hypothetical protein lwe1935 [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742229|emb|CAK21353.1| unnamed protein product [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 334
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 20/226 (8%)
Query: 1 LDLMNHQAGFDE-MPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVER 59
L L+ H +G + +P + K D++ Y Q GT +Y++ + L+ Y++ +
Sbjct: 101 LHLLTHSSGLAQNIPNFLMETKEDVKRYV--YATPQINPSGTNVTYADANFLLLGYLINQ 158
Query: 60 ISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLW 119
+ G Y + +++ EPL+M + P + N + + + +G QG+ FK W
Sbjct: 159 LDGN-YEQSIQKNILEPLQMTHSNFHPT-NKNQVIPTELDQKRGL-IQGEA---HDFKAW 212
Query: 120 MYPV----GGAVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHPGTDIVRNAHGF 175
+ G TL DL KF AL+ + E +L T T PG + R G
Sbjct: 213 IAKSNTGHAGLFSTLADLSKFRDALILQNGSPILSEKTVQLMQTNHT-PGLNRTR---GL 268
Query: 176 WASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYN 221
+G ++L H+G +++ LDLK+ ++L+N+++ N
Sbjct: 269 GWDLHGDSVLYHTGFT---GTFMVLDLKHQASLIVLSNRVHPSRAN 311
>gi|16803955|ref|NP_465440.1| hypothetical protein lmo1916 [Listeria monocytogenes EGD-e]
gi|16411369|emb|CAC99994.1| lmo1916 [Listeria monocytogenes]
Length = 335
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 22/227 (9%)
Query: 1 LDLMNHQAGFDE-MPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVER 59
L L+ H +G + +P + ++ D+ Y Q PGT +Y++ + L+ Y++ +
Sbjct: 101 LHLLTHSSGLAQNIPNFSMNNREDVMRYV--YATPQINTPGTVVTYADANFLLLGYLISK 158
Query: 60 ISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKLW 119
+ G Y + ++ EPL M T+ P ++ + + + +G QG++ FK W
Sbjct: 159 LDGN-YEKAIQNNILEPLIMTNTSFHP-VNKKQVIPTELDQTRGL-IQGEV---HDFKAW 212
Query: 120 MYPVG----GAVGTLGDLQKFAQAL-LERKTLFHRPETWTELYSTTSTHPGTDIVRNAHG 174
G G TL DL KF AL L+ +TW +L T PG + R G
Sbjct: 213 TAKSGTGHAGLFSTLSDLSKFRDALMLQLGAPILSEKTW-QLMQINHT-PGLNRSR---G 267
Query: 175 FWASHYGVTLLGHSGNADGFSSYLYLDLKNGIGQVILTNQLYEQVYN 221
G ++L H+G +++ LDLK ++L+N+++ N
Sbjct: 268 LGWDLRGESVLYHTGFT---GTFMVLDLKRQASLIVLSNRVHPSRAN 311
>gi|52142488|ref|YP_084342.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus cereus E33L]
gi|51975957|gb|AAU17507.1| D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein)
[Bacillus cereus E33L]
Length = 388
Score = 55.1 bits (131), Expect = 9e-06, Method: Composition-based stats.
Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 31/214 (14%)
Query: 3 LMNHQAGFDEMPLYKKGDKSDLEEQFRDYQPIQ-------SFEPGTTTSYSNFSTALVSY 55
L+NH +G E K D + ++ + + ++ F PG YSN ++
Sbjct: 150 LLNHTSGIAEYLKSKDADVMNSKKTYTAEEIVKIGLSLPPDFSPGKDWLYSNTGYVILGM 209
Query: 56 IVERISGQKYADYVHEHVFEPLEMDRTAILPDLSDNAYVQEKRKEDKGY---DDQGKLLG 112
++E+I+G YA+ + + EPL++ T L N+ V + +GY ++ G+L
Sbjct: 210 LIEKITGNSYAEEIENRIIEPLDLSNTF----LPGNSPVIPGKNHARGYVKMEETGELKD 265
Query: 113 DTPFKLWMYPVGG-AVGTLGDLQKFAQALLERKTLFHRPETWTELYSTTSTHP--GTDIV 169
T + + G + DL KF +LL K L R EL +T P G +
Sbjct: 266 ITYYNPSLANAAGDMISNADDLNKFFSSLLGGKLLKER-----ELKEMLTTVPVEGKGV- 319
Query: 170 RNAHGFWASHY------GVTLLGHSGNADGFSSY 197
G+ Y GV++ GH G+ GF ++
Sbjct: 320 --GDGYGLGIYETKLPNGVSVWGHGGSIPGFMTF 351
>gi|89095929|ref|ZP_01168823.1| beta-lactamase [Bacillus sp. NRRL B-14911]
gi|89089675|gb|EAR68782.1| beta-lactamase [Bacillus sp. NRRL B-14911]
Length = 575
Score = 55.1 bits (131), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 3 LMNHQAGFDE-MPLYKKGDKSDLEEQFRDYQPIQSFEPGTTTSYSNFSTALVSYIVERIS 61
LM H +GF +PLY +G+ + P+ + EPG+T +YS+ + + ++E++S
Sbjct: 198 LMTHTSGFTAWIPLYSQGNSREDRISIALQYPLAN-EPGSTYTYSDLNMIALGALIEKLS 256
Query: 62 GQKYADYVHEHVFEPLEMDRTAILP--DLSDNAYVQEKRKEDKGYDDQGKLLGDTPFKL- 118
G++ +YV +H+ +PL M T P L D E + G++ + + L
Sbjct: 257 GKRLDEYVRDHITKPLGMKDTMYNPPESLKDRIAATEYQPALGRGLVWGEVHDENAWSLD 316
Query: 119 WMYPVGGAVGTLGDLQKFAQALLERKT 145
+ G T GDL KFA + T
Sbjct: 317 GVAGHAGVFSTAGDLAKFAHMYVNEGT 343
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.322 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,713,559,293
Number of Sequences: 5470121
Number of extensions: 73331577
Number of successful extensions: 224384
Number of sequences better than 1.0e-05: 180
Number of HSP's better than 0.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 224179
Number of HSP's gapped (non-prelim): 201
length of query: 454
length of database: 1,894,087,724
effective HSP length: 136
effective length of query: 318
effective length of database: 1,150,151,268
effective search space: 365748103224
effective search space used: 365748103224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)