BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract


RepeatMasker repeats found in sequence:
No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'E05E11_I11_10.ab1'
        (651 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 5 Sequences     : less than 5 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1476 273 |======================================================
   6310 1203 147 |=============================
   3980 1056 184 |====================================
   2510  872 156 |===============================
   1580  716 109 |=====================
   1000  607 103 |====================
    631  504  70 |==============
    398  434  37 |=======
    251  397  25 |=====
    158  372  17 |===
    100  355   6 |=
   63.1  349   4 |:
   39.8  345  17 |===
   25.1  328   8 |=
   15.8  320   3 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 317  <<<<<<<<<<<<<<<<<
   10.0  317   2 |:
   6.31  315   1 |:
   3.98  314   2 |:
   2.51  312   0 |
   1.58  312   1 |:
   1.00  311   1 |:
   0.63  310   0 |
   0.40  310   2 |:
   0.25  308   5 |=
   0.16  303   1 |:
   0.10  302   4 |:
  0.063  298   1 |:
  0.040  297   0 |
  0.025  297   0 |
  0.016  297   0 |
  0.010  297   1 |:
 0.0063  296   1 |:
 0.0040  295   2 |:
 0.0025  293   0 |
 0.0016  293   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|11272416|pir||T46009E2 ubiquitin-conjugating-like ... +3   782  1.0e-76   1
gi|11272348|pir||T50603ubiquitin-conjugating enzyme [... +3   672  4.6e-65   1
gi|7621708|gb|AAF65153.1|AF246690_1(AF246690) putativ... +3   576  6.9e-55   1
gi|4507785ref|NP_003336.1| ubiquitin-conjugating enzy... +3   559  4.4e-53   1
gi|2194010|pdb|1U9A|AChain A, Human Ubiquitin-Conjuga... +3   559  4.4e-53   1
gi|3212324|pdb|1A3S|   Human Ubc9                        +3   559  4.4e-53   1
gi|12061049|gb|AAG48365.1|AF332623_1(AF332623) ubiqui... +3   559  4.4e-53   1
gi|4732095|gb|AAD28601.1|AF128240_1(AF128240) ubiquit... +3   558  5.6e-53   1
gi|7437986|pir||JC5970nuclear ubiquitin-conjugating e... +3   540  4.5e-51   1
gi|2501430|sp|O09181|UBCI_MESAUUBIQUITIN-CONJUGATING ... +3   539  5.7e-51   1
gi|2136344|pir||S71113ubiquitin-conjugating enzyme 9 ... +3   532  3.2e-50   1
gi|731040|sp|P40984|UBC3_SCHPOUBIQUITIN-CONJUGATING E... +3   527  1.1e-49   1
gi|6320139ref|NP_010219.1| ubiquitin-conjugating enzy... +3   526  1.4e-49   1
gi|7500139|pir||T29929hypothetical protein F29B9.6 - ... +3   515  2.0e-48   1
gi|12653903|gb|AAH00744.1|AAH00744(BC000744) Similar ... +3   503  3.7e-47   1
gi|9802917|gb|AAF99926.1|(U70849) Contains similarity... +3   469  1.5e-43   1
gi|1174844|sp|P42745|UBC2_ARATHUBIQUITIN-CONJUGATING ... +3   312  6.5e-27   1
gi|8118527|gb|AAF73016.1|AF262934_1(AF262934) ubiquit... +3   312  6.5e-27   1
gi|464980|sp|P35130|UBC2_MEDSAUBIQUITIN-CONJUGATING E... +3   311  8.3e-27   1
gi|136636|sp|P25865|UBC1_ARATHUBIQUITIN-CONJUGATING E... +3   307  2.2e-26   1
gi|136640|sp|P25866|UBC2_WHEATUBIQUITIN-CONJUGATING E... +3   300  1.2e-25   1
gi|1174846|sp|P42746|UBC3_ARATHUBIQUITIN-CONJUGATING ... +3   300  1.2e-25   1
gi|6321380ref|NP_011457.1| Ubiquitin conjugating (E2)... +3   298  2.0e-25   1
gi|3659954|pdb|1AYZ|AChain A, Crystal Structure Of Th... +3   298  2.0e-25   1
gi|9790041ref|NP_062642.1| ubiquitin-conjugating enzy... +3   295  4.1e-25   1
gi|1717855|sp|P52493|UBC2_NEUCRUBIQUITIN-CONJUGATING ... +3   289  1.8e-24   1
gi|4507769ref|NP_003327.1| ubiquitin-conjugating enzy... +3   288  2.3e-24   1
gi|11421391ref|XP_010361.1| ubiquitin-conjugating enz... +3   288  2.3e-24   1
gi|4507771ref|NP_003328.1| ubiquitin-conjugating enzy... +3   285  4.7e-24   1
gi|11417349ref|XP_004044.1| ubiquitin-conjugating enz... +3   284  6.0e-24   1
gi|1816660|gb|AAB47850.1|(U86521) NhRAD6 [Nectria hae... +3   282  9.8e-24   1
gi|6136093|sp|O74201|UBC2_CANALUBIQUITIN-CONJUGATING ... +3   281  1.3e-23   1
gi|1174845|sp|P23566|UBC2_SCHPOUBIQUITIN-CONJUGATING ... +3   278  2.6e-23   1
gi|1717853|sp|P52478|UBC1_CAEELUBIQUITIN-CONJUGATING ... +3   278  2.6e-23   1
gi|106346|pir||S17516hypothetical protein - human        +3   277  3.3e-23   1
gi|11272418|pir||T45220ubiquitin--protein ligase (EC ... +3   276  4.2e-23   1
gi|7296802|gb|AAF52079.1|(AE003604) UbcD6 gene produc... +3   275  5.4e-23   1
gi|136637|sp|P25153|UBC6_DROMEUBIQUITIN-CONJUGATING E... +3   274  6.9e-23   1
gi|12718396|emb|CAC28704.1|(AL513444) probable ubiqui... +3   273  8.8e-23   1
gi|464981|sp|P35135|UBC4_LYCESUBIQUITIN-CONJUGATING E... +3   270  1.8e-22   1
gi|464985|sp|P35131|UBC8_ARATHUBIQUITIN-CONJUGATING E... +3   269  2.3e-22   1
gi|7497060|pir||T32959hypothetical protein C35B1.1 - ... +3   269  2.3e-22   1
gi|6692118|gb|AAF24583.1|AC007764_25(AC007764) F22C12... +3   269  2.3e-22   1
gi|10185167|emb|CAC08543.1|(AL441603) ubiquitin-conju... +3   267  3.8e-22   1
gi|5762457|gb|AAD51109.1|AF176040_1(AF176040) ubiquit... +3   266  4.9e-22   1
gi|456568|gb|AAA64427.1|(L29077) ubiquitin conjugatin... +3   265  6.2e-22   1
gi|464986|sp|P35132|UBC9_ARATHUBIQUITIN-CONJUGATING E... +3   264  7.9e-22   1
gi|11762186|gb|AAG40371.1|AF325019_1(AF325019) AT4g27... +3   264  7.9e-22   1
gi|464987|sp|P35133|UBCA_ARATHUBIQUITIN-CONJUGATING E... +3   263  1.0e-21   1
gi|441457|emb|CAA51821.1|(X73419) ubiquitin conjugati... +3   263  1.0e-21   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 267 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|11272416|pir||T46009  E2 ubiquitin-conjugating-like enzyme Ahus5 -
            Arabidopsis thaliana >gi|1174162|gb|AAA86642.1| (U44976)
            ubiquitin-conjugating enzyme [Arabidopsis thaliana]
            >gi|3746915|gb|AAC64116.1| (AF091106) E2 ubiquitin-conjugating-like
            enzyme [Arabidopsis thaliana] >gi|6729530|emb|CAB67615.1|
            (AL132977) E2 ubiquitin-conjugating-like enzyme Ahus5 [Arabidopsis
            thaliana]
            Length = 160

Frame  3 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 782 (275.3 bits), Expect = 1.0e-76, P = 1.0e-76
 Identities = 139/160 (86%), Positives = 147/160 (91%), Frame = +3

Query:   126 MSGGIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFP 305
             M+ GIARGRL EERKSWRKNHPHGFVAKPET  DGTVNLMVWH TIPGK GTDWEGG+FP
Sbjct:     1 MASGIARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFP 60

Query:   306 LTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDL 485
             LT+HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED GWRPAITVKQILVGIQDL
Sbjct:    61 LTMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDL 120

Query:   486 LDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPPLL 605
             LD PNPADPAQT+GYHLF QD  EYK+RV+ Q+KQYP L+
Sbjct:   121 LDTPNPADPAQTDGYHLFCQDPVEYKKRVKLQSKQYPALV 160


 >gi|11272348|pir||T50603  ubiquitin-conjugating enzyme [imported] - Prunus
            armeniaca  (fragment) >gi|2267139|gb|AAB63513.1| (AF008910)
            ubiquitin-conjugating enzyme [Prunus armeniaca]
            Length = 126

Frame  3 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 126
                       0                  50                 100

  Plus Strand HSPs:

 Score = 672 (236.6 bits), Expect = 4.6e-65, P = 4.6e-65
 Identities = 120/126 (95%), Positives = 123/126 (97%), Frame = +3

Query:   228 GTVNLMVWHRTIPGKTGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVC 407
             GTVNLMVWH TIPGKTGTDWEGG+FPLTLHFSEDYPSKPPKCKFP GFFHPNVYPSGTVC
Sbjct:     1 GTVNLMVWHCTIPGKTGTDWEGGFFPLTLHFSEDYPSKPPKCKFPPGFFHPNVYPSGTVC 60

Query:   408 LSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 587
             LSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDA EYK+RVRQQAK
Sbjct:    61 LSILNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDATEYKKRVRQQAK 120

Query:   588 QYPPLL 605
             QYPPL+
Sbjct:   121 QYPPLV 126


 >gi|7621708|gb|AAF65153.1|AF246690_1  (AF246690) putative E2 enzyme Ubc9
            [Dictyostelium discoideum]
            Length = 159

Frame  3 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150

  Plus Strand HSPs:

 Score = 576 (202.8 bits), Expect = 6.9e-55, P = 6.9e-55
 Identities = 96/155 (61%), Positives = 126/155 (81%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GI+  RL+EERK+WR++HP+GF A+P T  DG++NL VW+  IPGKT T+WEGG +PL +
Sbjct:     3 GISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F+EDYPSKPPKC+FP+ FFHPNVYPSGTVCLSILNE++ W+P++T+K +L+GIQDLLD 
Sbjct:    63 EFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDN 122

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             PNP  PAQ    HLF+ +  EY ++V+ Q+K YPP
Sbjct:   123 PNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVYPP 157


 >gi|4507785  ref|NP_003336.1| ubiquitin-conjugating enzyme E2I (homologous to
            yeast UBC9) [Homo sapiens] >gi|6981690 ref|NP_037182.1| ubiquitin
            conjugating enzyme E2I (homologous to yeast UBC9) [Rattus
            norvegicus] >gi|7549799 ref|NP_035795.1| ubiquitin-conjugating
            enzyme E2I [Mus musculus] >gi|1717865|sp|P50550|UBCI_HUMAN
            UBIQUITIN-CONJUGATING ENZYME E2-18 KDA (UBIQUITIN-PROTEIN LIGASE)
            (UBIQUITIN CARRIER PROTEIN) (P18) >gi|2136340|pir||JC6034 ubiquitin
            conjugating enzyme - human >gi|2136342|pir||JC6056
            ubiquitin--protein ligase (EC 6.3.2.19) E2I - human
            >gi|2136343|pir||S69500 ubiquitin conjugating enzyme UBC9 - human
            >gi|973255|gb|AAC51361.1| (U29092) ubiquitin conjugating enzyme
            [Homo sapiens] >gi|1172224|gb|AAA86662.1| (U45328)
            ubiquitin-conjugating enzyme [Homo sapiens]
            >gi|1183832|dbj|BAA08091.1| (D45050) ubiquitin conjugating enzyme
            [Homo sapiens] >gi|1184055|gb|AAB02181.1| (U31933) ubiquitin
            conjugating enzyme homolog [Homo sapiens]
            >gi|1184057|gb|AAB02182.1| (U31934) ubiquitin conjugating enzyme
            homolog [Mus musculus] >gi|1296801|emb|CAA65287.1| (X96427)
            ubiquitin conjugating enzyme [Homo sapiens]
            >gi|1483527|emb|CAA68072.1| (X99739) ubiquitin conjugating enzyme
            [Mus musculus] >gi|1561757|gb|AAC50715.1| (U66818) ubiquitin
            conjugating enzyme 9 [Homo sapiens] >gi|1561759|gb|AAC50716.1|
            (U66867) ubiquitin conjugating enzyme 9 [Homo sapiens]
            >gi|1574950|gb|AAB09410.1| (U38785) RAD6 homolog; May be involved
            in ubiquitin conjugation; Interacts with RAD52 and RAD51 proteins;
            Method: conceptual translation supplied by author [Homo sapiens]
            >gi|1667489|gb|AAB18790.1| (U76416) ubiquitin conjugating enzyme
            mUBC9 [Mus musculus] >gi|1857451|gb|AAB48446.1| (U82627)
            ubiquitin-conjugating enzyme mE2 [Mus musculus]
            >gi|1943759|gb|AAB52424.1| (U94402) ubiquitin conjugating enzyme
            UBC9 [Mus musculus] >gi|2078331|gb|AAB57736.1| (U88561) E2
            ubiquitin conjugating enzyme [Xenopus laevis]
            >gi|2407958|emb|CAA66188.1| (X97575) ubiquitin-conjugating enzyme
            [Mus musculus] >gi|2597931|emb|CAA05359.1| (AJ002385)
            ubiquitin-conjugating enzyme, UBC9 [Homo sapiens]
            >gi|4079643|gb|AAC98704.1| (U54632) ubiquitin-conjugating enzyme
            UbcE2A [Rattus norvegicus] >gi|5262325|emb|CAB45853.1| (AL031714)
            C358B7.1 (ubiquitin-conjugating enzyme E2I (homologous to yeast
            UBC9)) [Homo sapiens] >gi|12653317|gb|AAH00427.1|AAH00427
            (BC000427) ubiquitin-conjugating enzyme E2I (homologous to yeast
            UBC9) [Homo sapiens]
            Length = 158

Frame  3 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 559 (196.8 bits), Expect = 4.4e-53, P = 4.4e-53
 Identities = 100/155 (64%), Positives = 118/155 (76%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL +ERK+WRK+HP GFVA P   PDGT+NLM W   IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             PN  DPAQ E Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157


 >gi|2194010|pdb|1U9A|A  Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
            >gi|2392592|pdb|1U9B|  MurineHUMAN UBIQUITIN-Conjugating Enzyme
            Ubc9
            Length = 160

Frame  3 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 559 (196.8 bits), Expect = 4.4e-53, P = 4.4e-53
 Identities = 100/155 (64%), Positives = 118/155 (76%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL +ERK+WRK+HP GFVA P   PDGT+NLM W   IPGK GT WEGG F L +
Sbjct:     5 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 64

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    65 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 124

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             PN  DPAQ E Y ++ Q+  EY++RVR QAK++ P
Sbjct:   125 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 159


 >gi|3212324|pdb|1A3S|     Human Ubc9
            Length = 160

Frame  3 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |               |              |               |   | 160
                       0              50            100             150

  Plus Strand HSPs:

 Score = 559 (196.8 bits), Expect = 4.4e-53, P = 4.4e-53
 Identities = 100/155 (64%), Positives = 118/155 (76%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL +ERK+WRK+HP GFVA P   PDGT+NLM W   IPGK GT WEGG F L +
Sbjct:     5 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 64

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    65 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 124

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             PN  DPAQ E Y ++ Q+  EY++RVR QAK++ P
Sbjct:   125 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 159


 >gi|12061049|gb|AAG48365.1|AF332623_1  (AF332623) ubiquitin-conjugating enzyme
            9-2 [Danio rerio]
            Length = 157

Frame  3 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 559 (196.8 bits), Expect = 4.4e-53, P = 4.4e-53
 Identities = 100/155 (64%), Positives = 118/155 (76%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL +ERK+WRK+HP GFVA P   PDGT+NLM W   IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             PN  DPAQ E Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFSP 157


 >gi|4732095|gb|AAD28601.1|AF128240_1  (AF128240) ubiquitin-conjugating enzyme 9
            [Danio rerio]
            Length = 158

Frame  3 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 558 (196.4 bits), Expect = 5.6e-53, P = 5.6e-53
 Identities = 100/155 (64%), Positives = 118/155 (76%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL +ERK+WRK+HP GFVA P   PDGT+NLM W   IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             PN  DPAQ E Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFSP 157


 >gi|7437986|pir||JC5970  nuclear ubiquitin-conjugating enzyme - fruit fly
            (Drosophila melanogaster) >gi|2979684|gb|AAC38964.1| (AF030443)
            ubiquitin-conjugating enzyme 9 [Drosophila melanogaster]
            >gi|2979686|gb|AAC38965.1| (AF030444) ubiquitin-conjugating enzyme
            9 homolog [Drosophila melanogaster] >gi|3892912|dbj|BAA34574.1|
            (AB017606) ubiquitin-conjugating enzyme 9 [Drosophila melanogaster]
            >gi|3892914|dbj|BAA34575.1| (AB017607) ubiquitin-conjugating enzyme
            9 [Drosophila melanogaster] >gi|4530293|gb|AAD21970.1| (AF106664)
            ubiquitin-conjugating enzyme [Drosophila melanogaster]
            >gi|6934290|gb|AAF31701.1|AF218861_1 (AF218861) Dorsal interacting
            protein 4 [Drosophila melanogaster] >gi|7296195|gb|AAF51487.1|
            (AE003589) lwr gene product [Drosophila melanogaster]
            Length = 159

Frame  3 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |               |               |              |   | 159
                       0              50             100            150

  Plus Strand HSPs:

 Score = 540 (190.1 bits), Expect = 4.5e-51, P = 4.5e-51
 Identities = 95/151 (62%), Positives = 117/151 (77%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL EERK+WRK+HP GFVA+P   PDGT+NLM+W   IPGK  T WEGG + L +
Sbjct:     3 GIAITRLGEERKAWRKDHPFGFVARPAKNPDGTLNLMIWECAIPGKKSTPWEGGLYKLRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYP+ PPKCKF    FHPNVYPSGTVCLS+L+E+  WRPAIT+KQIL+GIQDLL++
Sbjct:    63 IFKDDYPTSPPKCKFEPPLFHPNVYPSGTVCLSLLDEEKDWRPAITIKQILLGIQDLLNE 122

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 587
             PN  DPAQ E Y ++ Q+  EY++RVR QA+
Sbjct:   123 PNIKDPAQAEAYTIYCQNRLEYEKRVRAQAR 153


 >gi|2501430|sp|O09181|UBCI_MESAU  UBIQUITIN-CONJUGATING ENZYME E2-18 KDA
            (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
            >gi|2213901|gb|AAB82781.1| (AF004814) ubiquitin conjugating enzyme
            [Mesocricetus auratus]
            Length = 158

Frame  3 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 50..97
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 93
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..154
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       4..153
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 82..96
__________________


  Plus Strand HSPs:

 Score = 539 (189.7 bits), Expect = 5.7e-51, P = 5.7e-51
 Identities = 95/155 (61%), Positives = 115/155 (74%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL +ERK+WRK+HP GFVA P   PDGT+NLM W   IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+ Q+ +GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNE 122

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             PN  +PAQ E Y ++ Q+  EY++R R QAK++ P
Sbjct:   123 PNIQEPAQAEAYTIYCQNRVEYEKRFRAQAKKFCP 157


 >gi|2136344|pir||S71113  ubiquitin-conjugating enzyme 9 - human
            >gi|1463033|gb|AAC50603.1| (U31882) ubiquitin-conjugating enzyme 9
            (UBC9) [Homo sapiens]
            Length = 158

Frame  3 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 158
                       0              50             100             150

  Plus Strand HSPs:

 Score = 532 (187.3 bits), Expect = 3.2e-50, P = 3.2e-50
 Identities = 96/155 (61%), Positives = 114/155 (73%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL +ERK+WR +HP GFVA P   PDGT+NLM W   IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRPDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYPS PPKCKF    FHPN  P GTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNGVPFGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             PN  DPAQ E Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157


 >gi|731040|sp|P40984|UBC3_SCHPO  UBIQUITIN-CONJUGATING ENZYME E2-18 KD
            (UBIQUITIN-PROTEIN LIGASE HUS5) (UBIQUITIN CARRIER PROTEIN HUS5)
            >gi|2130207|pir||S62571 probable ubiquitin--protein ligase (EC
            6.3.2.19) hus5 - fission yeast (Schizosaccharomyces pombe)
            >gi|7493563|pir||T38586 ubiquitin conjugating enzyme - fission
            yeast (Schizosaccharomyces pombe) >gi|551456|emb|CAA57438.1|
            (X81846) hus5 [Schizosaccharomyces pombe]
            >gi|1065900|emb|CAA91899.1| (Z67961) ubiquitin conjugating enzyme
            [Schizosaccharomyces pombe] >gi|1095713|prf||2109356A
            ubiquitin-conjugating enzyme [Schizosaccharomyces pombe]
            Length = 157

Frame  3 hits (HSPs):   __________________________________________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 50..97
   DOMO                 DM00225: UBIQUITIN-CONJUGATINGENZYMES    2..156
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 93
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..154
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       3..148
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 82..96
__________________


  Plus Strand HSPs:

 Score = 527 (185.5 bits), Expect = 1.1e-49, P = 1.1e-49
 Identities = 94/154 (61%), Positives = 116/154 (75%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             + + RL EERK WR++HP GF AKP    DG ++LM W   IPGK  T WEGG + LT+ 
Sbjct:     4 LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMA 63

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F E+YP++PPKC+F    FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQDLLD P
Sbjct:    64 FPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDP 123

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPP 599
             N A PAQTE Y +F +D  EY++RVR QA++  P
Sbjct:   124 NIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 157


 >gi|6320139  ref|NP_010219.1| ubiquitin-conjugating enzyme; Ubc9p [Saccharomyces
            cerevisiae] >gi|1717862|sp|P50623|UBC9_YEAST UBIQUITIN-CONJUGATING
            ENZYME E2-18 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER
            PROTEIN) >gi|1078449|pir||S52414 ubiquitin--protein ligase (EC
            6.3.2.19) UBC9 - yeast  (Saccharomyces cerevisiae)
            >gi|634089|emb|CAA57888.1| (X82538) ubiquitin-conjugating enzyme
            [Saccharomyces cerevisiae] >gi|1431070|emb|CAA98629.1| (Z74112) ORF
            YDL064w [Saccharomyces cerevisiae] >gi|1093105|prf||2102354A
            ubiquitin-conjugating enzyme [Saccharomyces cerevisiae]
            Length = 157

Frame  3 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 157
                       0              50             100             150

  Plus Strand HSPs:

 Score = 526 (185.2 bits), Expect = 1.4e-49, P = 1.4e-49
 Identities = 91/148 (61%), Positives = 112/148 (75%), Frame = +3

Query:   150 RLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHFSED 329
             RL EERK WRK+HP GF AKP    DG+++L  W   IPGK GT+W GG +P+T+ +  +
Sbjct:     8 RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67

Query:   330 YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPNPAD 509
             YPSKPPK KFP GF+HPNVYPSGT+CLSILNED  WRPAIT+KQI++G+QDLLD PNP  
Sbjct:    68 YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNS 127

Query:   510 PAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             PAQ   +  F ++ AEY ++V  QAKQY
Sbjct:   128 PAQEPAWRSFSRNKAEYDKKVLLQAKQY 155


 >gi|7500139|pir||T29929  hypothetical protein F29B9.6 - Caenorhabditis elegans
            >gi|4038452|gb|AAC97374.1| (AF106565) ubiquitin-conjugating enzyme
            9 homolog [Caenorhabditis elegans]
            Length = 166

Frame  3 hits (HSPs):   _______________________________________________   
                        __________________________________________________
Database sequence:     |              |              |              |     | 166
                       0             50            100            150

  Plus Strand HSPs:

 Score = 515 (181.3 bits), Expect = 2.0e-48, P = 2.0e-48
 Identities = 88/153 (57%), Positives = 116/153 (75%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA GRL EERK WRK+HP GF+AKP    DGT+NL  W   IPG+  T WEGG + + +
Sbjct:     3 GIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +D+PS PPKCKF    FHPNVYPSGTVCLS+L+E+  W+P+I++KQ+L+GIQDLL+ 
Sbjct:    63 LFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNH 122

Query:   495 PNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             PN  DPAQ E Y ++ Q+ AEY++RV+++A +Y
Sbjct:   123 PNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKY 155


 >gi|12653903|gb|AAH00744.1|AAH00744  (BC000744) Similar to ubiquitin-conjugating
            enzyme E2I (homologous to yeast UBC9) [Homo sapiens]
            Length = 184

Frame  3 hits (HSPs):   _____________________________________             
                        __________________________________________________
Database sequence:     |             |            |             |         | 184
                       0            50          100           150

  Plus Strand HSPs:

 Score = 503 (177.1 bits), Expect = 3.7e-47, P = 3.7e-47
 Identities = 90/135 (66%), Positives = 103/135 (76%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA  RL +ERK+WRK+HP GFVA P   PDGT+NLM W   IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   495 PNPADPAQTEGYHLF 539
             PN  DPAQ E Y ++
Sbjct:   123 PNIQDPAQAEAYTIY 137


 >gi|9802917|gb|AAF99926.1|  (U70849) Contains similarity to Pfam domain: PF00179
            (UQ_con), Score=198.6, E-value=3.2e-56, N=1 [Caenorhabditis
            elegans]
            Length = 292

Frame  3 hits (HSPs):   __________________________                        
                        __________________________________________________
Database sequence:     |        |       |        |        |       |       | 292
                       0       50     100      150      200     250

  Plus Strand HSPs:

 Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
 Identities = 82/147 (55%), Positives = 106/147 (72%), Frame = +3

Query:   135 GIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTL 314
             GIA GRL EERK WRK+HP GF+AKP    DGT+NL  W   IPG+  T WEGG + + +
Sbjct:     3 GIAAGRLAEERKHWRKDHPFGFIAKPVKNADGTLNLFNWECAIPGRKDTIWEGGLYRIRM 62

Query:   315 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQ 494
              F +D+PS PPKCKF    FHPNVYPSGTVCLS+L+E+  W+P+I++KQ+L+GIQDLL+ 
Sbjct:    63 LFKDDFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNH 122

Query:   495 PNPADPAQTEGYHLFIQDA-AEYKRRV 572
             PN  DPAQ E Y ++     +E+ + V
Sbjct:   123 PNIEDPAQAEAYQIYYSPTMSEFMKGV 149


 >gi|1174844|sp|P42745|UBC2_ARATH  UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 2
            (UBIQUITIN-PROTEIN LIGASE 2) (UBIQUITIN CARRIER PROTEIN 2)
            >gi|1076426|pir||S43783 ubiquitin-conjugating enzyme UBC2 -
            Arabidopsis thaliana >gi|431264|gb|AAA32899.1| (L19353) ubiquitin
            conjugating enzyme [Arabidopsis thaliana]
            >gi|2689243|emb|CAA73476.1| (Y13031) ubiquitin conjugating enzyme
            [Arabidopsis thaliana] >gi|2947065|gb|AAC05346.1| (AC002521)
            putative ubiquitin-conjugating enzyme E2 [Arabidopsis thaliana]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..146
   PROSITE              G_BETA_REPEATS: Beta-transducin family T 24..38
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 312 (109.8 bits), Expect = 6.5e-27, P = 6.5e-27
 Identities = 64/150 (42%), Positives = 84/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P+   D   N+M+W+  I G   T W+GG F L+L F
Sbjct:     5 ARKRLMRDFKRLQQDPPAGISGAPQ---DN--NIMLWNAVIFGPDDTPWDGGTFKLSLQF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             SEDYP+KPP  +F    FHPN+Y  G++CL IL     W P   V  IL  IQ LL  PN
Sbjct:    60 SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA +E   +F +   EY RRVR+  +Q
Sbjct:   118 PNSPANSEAARMFSESKREYNRRVREVVEQ 147


 >gi|8118527|gb|AAF73016.1|AF262934_1  (AF262934) ubiquitin conjugating protein
            [Avicennia marina]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150

  Plus Strand HSPs:

 Score = 312 (109.8 bits), Expect = 6.5e-27, P = 6.5e-27
 Identities = 63/150 (42%), Positives = 85/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P+   D   N+M+W+  I G   T W+GG F LTL F
Sbjct:     5 ARKRLMRDFKRLQQDPPAGISGAPQ---DN--NIMLWNAVIFGPDDTPWDGGTFKLTLQF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +EDYP+KPP  +F    FHPN+Y  G++CL IL     W P   +  IL  IQ LL  PN
Sbjct:    60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDIAAILTSIQSLLCDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA +E   +F ++  EY RRVR+  +Q
Sbjct:   118 PNSPANSEAARMFSENKREYNRRVREIVEQ 147


 >gi|464980|sp|P35130|UBC2_MEDSA  UBIQUITIN-CONJUGATING ENZYME E2-17 KD
            (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
            >gi|166422|gb|AAA18528.1| (L06967) ubiquitin carrier protein
            [Medicago sativa]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..146
   PROSITE              G_BETA_REPEATS: Beta-transducin family T 24..38
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 311 (109.5 bits), Expect = 8.3e-27, P = 8.3e-27
 Identities = 64/150 (42%), Positives = 84/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  + + P G    P+   D   N+M+W+  I G   T W+GG F L+L F
Sbjct:     5 ARKRLMRDFKRLQHDPPAGISGAPQ---DN--NIMLWNAVIFGPDDTPWDGGTFKLSLQF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             SEDYP+KPP  +F    FHPN+Y  G++CL IL     W P   V  IL  IQ LL  PN
Sbjct:    60 SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA +E   +F ++  EY RRVR+  +Q
Sbjct:   118 PNSPANSEAARMFSENKREYNRRVREVVEQ 147


 >gi|136636|sp|P25865|UBC1_ARATH  UBIQUITIN-CONJUGATING ENZYME E2-17 KD 1
            (UBIQUITIN-PROTEIN LIGASE 1) (UBIQUITIN CARRIER PROTEIN 1)
            >gi|1076424|pir||S43781 ubiquitin-conjugating enzyme UBC1 -
            Arabidopsis thaliana >gi|2981894|pdb|2AAK|  Ubiquitin Conjugating
            Enzyme From Arabidopsis Thaliana >gi|166924|gb|AAA32903.1| (M62721)
            ubiquitin carrier protein [Arabidopsis thaliana]
            >gi|431260|gb|AAA32897.1| (L19351) ubiquitin conjugating enzyme
            [Arabidopsis thaliana] >gi|7262682|gb|AAF43940.1|AC012188_17
            (AC012188) Strong similarity to a Ubiquitin-conjugating Enzyme
            (E2-17 KD 1) from Arabidopsis thaliana gi|136636 and contains a
            Ubiqutin-conjugating Enzyme PF|00179 domain.  ESTs gb|AA728508,
            gb|H36735, gb|AI100736 come from this gene.
            >gi|12083310|gb|AAG48814.1|AF332451_1 (AF332451) putative
            ubiquitin-conjugating enzyme protein [Arabidopsis thaliana]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   DOMO                 DM00225: UBIQUITIN-CONJUGATINGENZYMES    2..149
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..146
   PROSITE              G_BETA_REPEATS: Beta-transducin family T 24..38
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 307 (108.1 bits), Expect = 2.2e-26, P = 2.2e-26
 Identities = 63/150 (42%), Positives = 83/150 (55%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P+   D   N+M+W+  I G   T W+GG F L+L F
Sbjct:     5 ARKRLMRDFKRLQQDPPAGISGAPQ---DN--NIMLWNAVIFGPDDTPWDGGTFKLSLQF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             SEDYP+KPP  +F    FHPN+Y  G++CL IL     W P   V  IL  IQ LL  PN
Sbjct:    60 SEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA +E   ++ +   EY RRVR   +Q
Sbjct:   118 PNSPANSEAARMYSESKREYNRRVRDVVEQ 147


 >gi|136640|sp|P25866|UBC2_WHEAT  UBIQUITIN-CONJUGATING ENZYME E2-17 KD
            (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
            >gi|170785|gb|AAA34310.1| (M62720) ubiquitin carrier protein
            [Triticum aestivum]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   Entrez               binding site: UBIQUITIN.                 88
   Entrez               mutagenized site: C->S: LOSS OF ACTIVITY 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..146
   PROSITE              G_BETA_REPEATS: Beta-transducin family T 24..38
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 300 (105.6 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 61/150 (40%), Positives = 83/150 (55%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P    D   N+ +W+  I G   T W+GG F LTL F
Sbjct:     5 ARKRLMRDFKRLQQDPPAGISGAPH---DN--NITLWNAVIFGPDDTPWDGGTFKLTLQF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +EDYP+KPP  +F    FHPN+Y  G++CL IL     W P   V  IL  IQ LL  PN
Sbjct:    60 TEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA +E   ++ ++  EY R+VR+  +Q
Sbjct:   118 PNSPANSEAARMYSENKREYNRKVREVVEQ 147


 >gi|1174846|sp|P42746|UBC3_ARATH  UBIQUITIN-CONJUGATING ENZYME E2-17 KD 3
            (UBIQUITIN-PROTEIN LIGASE 3) (UBIQUITIN CARRIER PROTEIN 3)
            >gi|1076425|pir||S43782 ubiquitin-conjugating enzyme UBC3 -
            Arabidopsis thaliana >gi|431262|gb|AAA32898.1| (L19352) ubiquitin
            conjugating enzyme [Arabidopsis thaliana]
            >gi|10178085|dbj|BAB11504.1| (AB015469) ubiquitin-conjugating
            enzyme E2-17 kd 3 (ubiquitin-protein ligase 3) (ubiquitin carrier
            protein 3)-like protein [Arabidopsis thaliana]
            Length = 150

Frame  3 hits (HSPs):    ________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 150
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..146
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 300 (105.6 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 63/150 (42%), Positives = 83/150 (55%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             A+ RL  + K  +K+ P G    P+   D   N+M W+  I G   T W+GG F LTLHF
Sbjct:     5 AKKRLMWDFKRLQKDPPVGISGAPQ---DN--NIMHWNALIFGPEDTPWDGGTFKLTLHF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +EDYP+KPP  +F    FHPN+Y  G++CL IL     W P   V  +L  IQ LL  PN
Sbjct:    60 TEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAVLTSIQSLLCDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA  E   LF ++  EY R+V +  +Q
Sbjct:   118 PDSPANAEAARLFSENKREYNRKVIEIVEQ 147


 >gi|6321380  ref|NP_011457.1| Ubiquitin conjugating (E2) enzyme. The C-terminal
            23 residues are critical for sporulation and histone
            polyubiquitinating activity, but not UV repair or induced
            mutagenesis.; Rad6p [Saccharomyces cerevisiae]
            >gi|136641|sp|P06104|UBC2_YEAST UBIQUITIN-CONJUGATING ENZYME E2-20
            KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
            >gi|83451|pir||A21906 ubiquitin-conjugating enzyme RAD6 - yeast
            (Saccharomyces cerevisiae) >gi|172349|gb|AAA34952.1| (K02962) RAD6
            protein [Saccharomyces cerevisiae] >gi|1322558|emb|CAA96761.1|
            (Z72580) ORF YGL058w [Saccharomyces cerevisiae]
            Length = 172

Frame  3 hits (HSPs):    __________________________________________       
                        __________________________________________________
Database sequence:     |              |             |              |      | 172
                       0             50           100            150

  Plus Strand HSPs:

 Score = 298 (104.9 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 64/150 (42%), Positives = 84/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G  A P  LPD   N+MVW+  I G   T +E G F L L F
Sbjct:     5 ARRRLMRDFKRMKEDAPPGVSASP--LPD---NVMVWNAMIIGPADTPYEDGTFRLLLEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
              E+YP+KPP  KF    FHPNVY +G +CL IL   + W P   V  IL  IQ L + PN
Sbjct:    60 DEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ--NRWTPTYDVASILTSIQSLFNDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             PA PA  E   LF    ++Y +RV++  ++
Sbjct:   118 PASPANVEAATLFKDHKSQYVKRVKETVEK 147


 >gi|3659954|pdb|1AYZ|A  Chain A, Crystal Structure Of The Saccharomyces
            Cerevisiae Ubiquitin-Conjugating Enzyme Rad6 (Ubc2) At 2.6a
            Resolution >gi|3659955|pdb|1AYZ|B Chain B, Crystal Structure Of The
            Saccharomyces Cerevisiae Ubiquitin-Conjugating Enzyme Rad6 (Ubc2)
            At 2.6a Resolution >gi|3659956|pdb|1AYZ|C Chain C, Crystal
            Structure Of The Saccharomyces Cerevisiae Ubiquitin-Conjugating
            Enzyme Rad6 (Ubc2) At 2.6a Resolution
            Length = 169

Frame  3 hits (HSPs):    ___________________________________________      
                        __________________________________________________
Database sequence:     |              |              |              |     | 169
                       0             50            100            150

  Plus Strand HSPs:

 Score = 298 (104.9 bits), Expect = 2.0e-25, P = 2.0e-25
 Identities = 64/150 (42%), Positives = 84/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G  A P  LPD   N+MVW+  I G   T +E G F L L F
Sbjct:     5 ARRRLMRDFKRMKEDAPPGVSASP--LPD---NVMVWNAMIIGPADTPYEDGTFRLLLEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
              E+YP+KPP  KF    FHPNVY +G +CL IL   + W P   V  IL  IQ L + PN
Sbjct:    60 DEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ--NRWTPTYDVASILTSIQSLFNDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             PA PA  E   LF    ++Y +RV++  ++
Sbjct:   118 PASPANVEAATLFKDHKSQYVKRVKETVEK 147


 >gi|9790041  ref|NP_062642.1| ubiquitin-conjugating enzyme HR6A [Mus musculus]
            >gi|3769549|gb|AAC64563.1| (AF089812) ubiquitin-conjugating enzyme
            HR6A [Mus musculus] >gi|4883773|gb|AAD31646.1| (AF120212)
            ubiquitin-conjugating enzyme [Gallus gallus]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150

  Plus Strand HSPs:

 Score = 295 (103.8 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 61/150 (40%), Positives = 85/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P        N+MVW+  I G  GT +E G F LT+ F
Sbjct:     5 ARRRLMRDFKRLQEDPPAGVSGAPSEN-----NIMVWNAVIFGPEGTPFEDGTFKLTIEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +E+YP+KPP  +F    FHPNVY  G++CL IL   + W P   V  IL  IQ LLD+PN
Sbjct:    60 TEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ--NRWSPTYDVSSILTSIQSLLDEPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA ++   L+ ++  EY++RV    +Q
Sbjct:   118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147


 >gi|1717855|sp|P52493|UBC2_NEUCR  UBIQUITIN-CONJUGATING ENZYME E2-17 KD
            (UBIQUITIN-PROTEIN LIGASE 2) (UBIQUITIN CARRIER PROTEIN)
            >gi|7437985|pir||S71430 DNA repair protein mus-8 - Neurospora
            crassa >gi|1100729|dbj|BAA11380.1| (D78372) mus-8 [Neurospora
            crassa]
            Length = 151

Frame  3 hits (HSPs):    ________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..146
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 289 (101.7 bits), Expect = 1.8e-24, P = 1.8e-24
 Identities = 61/150 (40%), Positives = 82/150 (54%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  + + P G  A P  +PD   N+M W+  I G   T +E G F L +HF
Sbjct:     5 ARRRLMRDFKRMQTDPPAGVSASP--VPD---NVMTWNAVIIGPADTPFEDGTFRLVMHF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
              E YP+KPP  KF    FHPNVY +G +CL IL   + W P   V  +L  IQ LL+ PN
Sbjct:    60 EEQYPNKPPSVKFISEMFHPNVYATGELCLDILQ--NRWSPTYDVAAVLTSIQSLLNDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
                PA  E  +L+  +  EY +RVR+  ++
Sbjct:   118 TGSPANVEASNLYKDNRKEYHKRVRETVEK 147


 >gi|4507769  ref|NP_003327.1| ubiquitin-conjugating enzyme E2A (RAD6 homolog)
            [Homo sapiens] >gi|1351346|sp|P49459|UBCA_HUMAN
            UBIQUITIN-CONJUGATING ENZYME E2-17 KDA (UBIQUITIN-PROTEIN LIGASE)
            (UBIQUITIN CARRIER PROTEIN) (HR6A) >gi|108016|pir||A41222
            ubiquitin--protein ligase (EC 6.3.2.19) E2A - human
            >gi|184044|gb|AAA35981.1| (M74524) HHR6A (Human homologue of yeast
            RAD 6); putative [Homo sapiens] >gi|11036948|gb|AAG27430.1|
            (AF294366) ubiquitin-conjugating enzyme HR6A [Homo sapiens]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150

  Plus Strand HSPs:

 Score = 288 (101.4 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 60/150 (40%), Positives = 84/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P        N+MVW+  I G  GT +  G F LT+ F
Sbjct:     5 ARRRLMRDFKRLQEDPPAGVSGAPSEN-----NIMVWNAVIFGPEGTPFGDGTFKLTIEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +E+YP+KPP  +F    FHPNVY  G++CL IL   + W P   V  IL  IQ LLD+PN
Sbjct:    60 TEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ--NRWSPTYDVSSILTSIQSLLDEPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA ++   L+ ++  EY++RV    +Q
Sbjct:   118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147


 >gi|11421391  ref|XP_010361.1| ubiquitin-conjugating enzyme E2A (RAD6 homolog)
            [Homo sapiens]
            Length = 192

Frame  3 hits (HSPs):              ______________________________________ 
                        __________________________________________________
Database sequence:     |            |            |            |           | 192
                       0           50          100          150

  Plus Strand HSPs:

 Score = 288 (101.4 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 60/150 (40%), Positives = 84/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P        N+MVW+  I G  GT +  G F LT+ F
Sbjct:    45 ARRRLMRDFKRLQEDPPAGVSGAPSEN-----NIMVWNAVIFGPEGTPFATGTFKLTIEF 99

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +E+YP+KPP  +F    FHPNVY  G++CL IL   + W P   V  IL  IQ LLD+PN
Sbjct:   100 TEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQ--NRWSPTYDVSSILTSIQSLLDEPN 157

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA ++   L+ ++  EY++RV    +Q
Sbjct:   158 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 187


 >gi|4507771  ref|NP_003328.1| ubiquitin-conjugating enzyme E2B (RAD6 homolog)
            [Homo sapiens] >gi|6678485 ref|NP_033484.1| ubiquitin-conjugating
            enzyme E2B (RAD6 homology) [Mus musculus]
            >gi|136638|sp|P23567|UBC2_HUMAN UBIQUITIN-CONJUGATING ENZYME E2-17
            KDA (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN) (HR6B)
            >gi|108017|pir||B41222 ubiquitin--protein ligase (EC 6.3.2.19) E2B
            - human >gi|284677|pir||A42416 ubiquitin carrier protein E2 -
            rabbit >gi|2143552|pir||I51913 14 kDa ubiquitin conjugating enzyme
            - rat >gi|30954|emb|CAA37339.1| (X53251) E2 protein [Homo sapiens]
            >gi|165780|gb|AAA31492.1| (M62387) ubiquitin conjugating-protein
            [Oryctolagus cuniculus] >gi|184046|gb|AAA35982.1| (M74525) HHR6B
            (Human homologue of yeast RAD 6); putative [Homo sapiens]
            >gi|207555|gb|AAA21087.1| (M62388) ubiquitin conjugating-protein
            [Rattus norvegicus] >gi|476117|gb|AAB60669.1| (U04308) 14 kDa
            ubiquitin conjugating enzyme [Rattus norvegicus]
            >gi|1237240|emb|CAA65602.1| (X96859) ubiquitin-conjugating enzym
            [Mus musculus] >gi|1373353|gb|AAC52884.1| (U57690) E214K [Mus
            musculus] >gi|5019992|gb|AAD37966.1|AF144083_1 (AF144083)
            ubiquitin-conjugating enzyme [Rattus norvegicus]
            >gi|11037550|gb|AAG27628.1| (AF294392) ubiquitin-conjugating enzyme
            HR6B [Homo sapiens] >gi|745378|prf||2016220A ubiquitin-conjugating
            enzyme:ISOTYPE=E2-14k [Rattus norvegicus]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150

  Plus Strand HSPs:

 Score = 285 (100.3 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 60/150 (40%), Positives = 83/150 (55%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P        N+M W+  I G  GT +E G F L + F
Sbjct:     5 ARRRLMRDFKRLQEDPPVGVSGAPSEN-----NIMQWNAVIFGPEGTPFEDGTFKLVIEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             SE+YP+KPP  +F    FHPNVY  G++CL IL   + W P   V  IL  IQ LLD+PN
Sbjct:    60 SEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ--NRWSPTYDVSSILTSIQSLLDEPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA ++   L+ ++  EY++RV    +Q
Sbjct:   118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147


 >gi|11417349  ref|XP_004044.1| ubiquitin-conjugating enzyme E2B (RAD6 homolog)
            [Homo sapiens]
            Length = 152

Frame  3 hits (HSPs):    ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 152
                       0               50             100              150

  Plus Strand HSPs:

 Score = 284 (100.0 bits), Expect = 6.0e-24, P = 6.0e-24
 Identities = 60/150 (40%), Positives = 83/150 (55%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P        N+M W+  I G  GT +E G F L + F
Sbjct:     5 ARRRLMRDFKRLQEDPPVGVSGAPSEN-----NIMQWNAVIFGPEGTPFEEGTFKLVIEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             SE+YP+KPP  +F    FHPNVY  G++CL IL   + W P   V  IL  IQ LLD+PN
Sbjct:    60 SEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ--NRWSPTYDVSSILTSIQSLLDEPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA ++   L+ ++  EY++RV    +Q
Sbjct:   118 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 147


 >gi|1816660|gb|AAB47850.1|  (U86521) NhRAD6 [Nectria haematococca]
            Length = 151

Frame  3 hits (HSPs):    ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150

  Plus Strand HSPs:

 Score = 282 (99.3 bits), Expect = 9.8e-24, P = 9.8e-24
 Identities = 60/150 (40%), Positives = 82/150 (54%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  + + P G  A P  +PD   N+M W+  I G   T +E G F L + F
Sbjct:     5 ARRRLMRDFKRMQTDPPAGVSASP--VPD---NVMTWNAVIIGPADTPFEDGTFRLVMQF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
              E YP+KPP+ KF    FHPNVY +G +CL IL   + W P   V  +L  IQ LL+ PN
Sbjct:    60 EEQYPNKPPQVKFISEMFHPNVYATGELCLDILQ--NRWSPTYDVAAVLTSIQSLLNDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
                PA  E  +L+  +  EY +RVR+  ++
Sbjct:   118 TGSPANVEASNLYKDNRKEYTKRVRETVEK 147


 >gi|6136093|sp|O74201|UBC2_CANAL  UBIQUITIN-CONJUGATING ENZYME E2-20 KDA
            (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
            >gi|3273562|gb|AAC24765.1| (AF036707) RAD6 [Candida albicans]
            >gi|5565868|gb|AAD45241.1| (AF118145) RAD6 [Candida albicans]
            Length = 179

Frame  3 hits (HSPs):    _______________________________________          
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 179
                       0            50           100           150
__________________

Annotated Domains:
   Entrez               Domain: ACIDIC TAIL.                     151..179
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..145
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 281 (98.9 bits), Expect = 1.3e-23, P = 1.3e-23
 Identities = 62/146 (42%), Positives = 82/146 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G  A P  LPD   N+M W+  I G + T +E G F L L F
Sbjct:     5 ARRRLMRDFKRMQQDPPSGVSASP--LPD---NVMKWNAVIIGPSDTPFEDGTFRLLLSF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
              E YP+KPP+ KF    FHPNVY SG +CL IL   + W P   V  IL  +Q LL+ PN
Sbjct:    60 DEQYPNKPPQVKFISEMFHPNVYASGELCLDILQ--NRWSPTYDVSSILTSVQSLLNDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQ 578
              + PA  E  +L+    + Y +RVR+
Sbjct:   118 ISSPANVEAANLYKDHRSLYVKRVRE 143


 >gi|1174845|sp|P23566|UBC2_SCHPO  UBIQUITIN-CONJUGATING ENZYME E2-17 KD
            (UBIQUITIN-PROTEIN LIGASE 2) (UBIQUITIN CARRIER PROTEIN)
            >gi|101070|pir||S12529 ubiquitin-conjugating enzyme rhp6 - fission
            yeast  (Schizosaccharomyces pombe) >gi|929893|emb|CAA90592.1|
            (Z50728) ubiquitin-conjugating enzyme e2-17 kd [Schizosaccharomyces
            pombe]
            Length = 151

Frame  3 hits (HSPs):    _______________________________________________  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   DOMO                 DM00225: UBIQUITIN-CONJUGATINGENZYMES    2..149
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..145
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 278 (97.9 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 63/146 (43%), Positives = 80/146 (54%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G  A P  + D   N+M+W+  I G   T +E G F L L F
Sbjct:     5 ARRRLMRDFKRMQQDPPAGVSASP--VSD---NVMLWNAVIIGPADTPFEDGTFKLVLSF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
              E YP+KPP  KF    FHPNVY +G +CL IL   + W P   V  IL  IQ LL+ PN
Sbjct:    60 DEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQ--NRWSPTYDVAAILTSIQSLLNDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQ 578
              A PA  E   L  ++  EY RRVR+
Sbjct:   118 NASPANAEAAQLHRENKKEYVRRVRK 143


 >gi|1717853|sp|P52478|UBC1_CAEEL  UBIQUITIN-CONJUGATING ENZYME E2-21.5 KD
            (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
            >gi|506644|gb|AAA83388.1| (U08139) similar to yeast RAD6 DNA repair
            protein, Swiss-Prot Accession Number P06104 [Caenorhabditis
            elegans]
            Length = 192

Frame  3 hits (HSPs):    ______________________________________           
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |            |            |           | 192
                       0           50          100          150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   DOMO                 DM00225: UBIQUITIN-CONJUGATINGENZYMES    2..149
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..146
   PRODOM               PD030864: O45062(1) UBC1(1)              148..191
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 278 (97.9 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 60/150 (40%), Positives = 84/150 (56%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             +R RL  + K  +++ P G    P    D   N++ W   I G   T +E G F L+L F
Sbjct:     5 SRRRLMRDFKKLQEDPPAGVSGAPTE--D---NILTWEAIIFGPQETPFEDGTFKLSLEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +E+YP+KPP  KF    FHPNVY  G++CL IL   + W P   V  IL  IQ LLD+PN
Sbjct:    60 TEEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA +    L+ ++  EY++RV+Q  +Q
Sbjct:   118 PNSPANSLAAQLYQENRREYEKRVQQIVEQ 147


 >gi|106346|pir||S17516  hypothetical protein - human
            Length = 151

Frame  3 hits (HSPs):    ________________________________________________ 
Annotated Domains:                              ______                    
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150
__________________

Annotated Domains:
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 76..90
__________________


  Plus Strand HSPs:

 Score = 277 (97.5 bits), Expect = 3.3e-23, P = 3.3e-23
 Identities = 60/150 (40%), Positives = 83/150 (55%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P    A  E       N+M W+  I G  GT +E G F L + F
Sbjct:     5 ARRRLMRDFKRLQEDPPCVSGAPSEN------NIMQWNAVIIGPEGTPFEDGTFRLVIEF 58

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             SE+YP+KPP  +F    FHPNVY  G++CL IL   + W P   V  IL  IQ LLD+PN
Sbjct:    59 SEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQ--NRWSPTYDVSSILTSIQSLLDEPN 116

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA ++   L+ ++  EY++RV    +Q
Sbjct:   117 PNSPANSQAAQLYQENKREYEKRVSAIVEQ 146


 >gi|11272418|pir||T45220  ubiquitin--protein ligase (EC 6.3.2.19) rhp6
            [imported] - fission yeast (Schizosaccharomyces pombe)
            >gi|5046|emb|CAA37340.1| (X53252) rhp6+ [Schizosaccharomyces pombe]
            Length = 151

Frame  3 hits (HSPs):    _______________________________________________  
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150

  Plus Strand HSPs:

 Score = 276 (97.2 bits), Expect = 4.2e-23, P = 4.2e-23
 Identities = 63/146 (43%), Positives = 80/146 (54%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G  A P  + D   N+M+W+  I G   T +E G F L L F
Sbjct:     5 ARRRLMRDFKRMQQDPPAGVSASP--VSD---NVMLWNAVIIGPADTPFEDGTFKLVLSF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
              E YP+KPP  KF    FHPNVY +G +CL IL   + W P   V  IL  IQ LL+ PN
Sbjct:    60 DEQYPNKPPLVKFVSTMFHPNVYANGELCLDILQ--NRWSPTYDVAAILTSIQRLLNDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQ 578
              A PA  E   L  ++  EY RRVR+
Sbjct:   118 NASPANAEAAQLHRENKKEYVRRVRK 143


 >gi|7296802|gb|AAF52079.1|  (AE003604) UbcD6 gene product [Drosophila
            melanogaster]
            Length = 151

Frame  3 hits (HSPs):    ________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150

  Plus Strand HSPs:

 Score = 275 (96.8 bits), Expect = 5.4e-23, P = 5.4e-23
 Identities = 59/150 (39%), Positives = 82/150 (54%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P    D   N+M+W+  I G   T +E G F LT+ F
Sbjct:     5 ARRRLMRDFKRLQEDPPTGVSGAPT---DN--NIMIWNAVIFGPHDTPFEDGTFKLTIEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +E+YP+KPP  +F    FHPNVY  G +CL IL   + W P   V  IL  IQ LL  PN
Sbjct:    60 TEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQ--NRWSPTYDVSAILTSIQSLLSDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA +    L+ ++  EY++RV+   +Q
Sbjct:   118 PNSPANSTAAQLYKENRREYEKRVKACVEQ 147


 >gi|136637|sp|P25153|UBC6_DROME  UBIQUITIN-CONJUGATING ENZYME E2-17 KD
            (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
            >gi|103350|pir||A39392 RAD6 DNA-repair homolog Dhr6 - fruit fly
            (Drosophila melanogaster) >gi|156732|gb|AAA28308.1| (M63792) DHR6
            [Drosophila melanogaster] >gi|156736|gb|AAA28309.1| (M64435) DHR6
            [Drosophila melanogaster]
            Length = 151

Frame  3 hits (HSPs):    ________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 45..92
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 88
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..147
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       1..146
   PROSITE              G_BETA_REPEATS: Beta-transducin family T 24..38
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 77..91
__________________


  Plus Strand HSPs:

 Score = 274 (96.5 bits), Expect = 6.9e-23, P = 6.9e-23
 Identities = 59/150 (39%), Positives = 82/150 (54%), Frame = +3

Query:   141 ARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLHF 320
             AR RL  + K  +++ P G    P    D   N+M+W+  I G   T +E G F LT+ F
Sbjct:     5 ARRRLMRDFKRLQEDPPTGVSGAPT---DN--NIMIWNAVIFGPHDTPFEDGTFKLTIEF 59

Query:   321 SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQPN 500
             +E+YP+KPP  +F    FHPNVY  G +CL IL   + W P   V  IL  IQ LL  PN
Sbjct:    60 TEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQ--NRWSPRYDVSAILTSIQSLLSDPN 117

Query:   501 PADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             P  PA +    L+ ++  EY++RV+   +Q
Sbjct:   118 PNSPANSTAAQLYKENRREYEKRVKACVEQ 147


 >gi|12718396|emb|CAC28704.1|  (AL513444) probable ubiquitin-conjugating enzyme
            ubcP3 [Neurospora crassa]
            Length = 166

Frame  3 hits (HSPs):   _________________________________________________ 
                        __________________________________________________
Database sequence:     |              |              |              |     | 166
                       0             50            100            150

  Plus Strand HSPs:

 Score = 273 (96.1 bits), Expect = 8.8e-23, P = 8.8e-23
 Identities = 62/161 (38%), Positives = 87/161 (54%), Frame = +3

Query:   126 MSGGIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFP 305
             MS  +A+ RL +E ++   N P G  A P +  D    L+ W   I G  GT +EGG FP
Sbjct:     1 MSLNVAQRRLLQEYRALTNNPPEGITAGPISEDD----LLHWECLIQGPEGTPFEGGVFP 56

Query:   306 LTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN---EDSG--------WRPAIT 452
               L F  DYP  PP  KF    FHPNVYPSG VC+SIL+   +D          W P  +
Sbjct:    57 AELKFPNDYPHMPPTMKFLGDIFHPNVYPSGLVCISILHPPGDDPNHYETASERWSPIQS 116

Query:   453 VKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAK 587
             V++IL+ +  +L +PN   PA  E   ++ +  +EY+ RV+   +
Sbjct:   117 VEKILLSVMSMLAEPNDESPANVEAAKMWREKRSEYEARVKASVR 161


 >gi|464981|sp|P35135|UBC4_LYCES  UBIQUITIN-CONJUGATING ENZYME E2-17 KD
            (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
            >gi|388207|gb|AAA34125.1| (L23762) ubiquitin carrier protein
            [Lycopersicon esculentum]
            Length = 148

Frame  3 hits (HSPs):   _________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 42..89
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 85
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..144
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       2..143
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________


  Plus Strand HSPs:

 Score = 270 (95.0 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 56/152 (36%), Positives = 83/152 (54%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A P        ++  W  TI G T + + GG F +++H
Sbjct:     1 MASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPTDSPYAGGVFLVSIH 55

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 113

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D A+Y+   R   ++Y
Sbjct:   114 NPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 145


 >gi|464985|sp|P35131|UBC8_ARATH  UBIQUITIN-CONJUGATING ENZYME E2-17 KD 8
            (UBIQUITIN-PROTEIN LIGASE 8) (UBIQUITIN CARRIER PROTEIN 8)
            (UBCAT4A) >gi|398699|emb|CAA78713.1| (Z14989) ubiquitin conjugating
            enzyme homolog [Arabidopsis thaliana] >gi|10178024|dbj|BAB11476.1|
            (AB005233) ubiquitin-conjugating enzyme E2-17 kD 8
            (ubiquitin-protein ligase 8) (ubiquitin carrier protein 8)
            [Arabidopsis thaliana] >gi|11762166|gb|AAG40361.1|AF325009_1
            (AF325009) F22C12.2 [Arabidopsis thaliana]
            Length = 148

Frame  3 hits (HSPs):   _________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 42..89
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 85
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..144
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       2..143
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________


  Plus Strand HSPs:

 Score = 269 (94.7 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 56/152 (36%), Positives = 82/152 (53%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A P        ++  W  TI G   + + GG F +T+H
Sbjct:     1 MASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPAESPYSGGVFLVTIH 55

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 113

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D A+Y+   R   ++Y
Sbjct:   114 NPDDPLVPEIAHMYKTDRAKYEATARNWTQKY 145


 >gi|7497060|pir||T32959  hypothetical protein C35B1.1 - Caenorhabditis elegans
            >gi|2854139|gb|AAC02561.1| (AF045638) Similar to ubiquitin
            conjugating-protein [Caenorhabditis elegans]
            Length = 205

Frame  3 hits (HSPs):             _____________________________           
                        __________________________________________________
Database sequence:     |           |            |           |           | | 205
                       0          50          100         150         200

  Plus Strand HSPs:

 Score = 269 (94.7 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 52/118 (44%), Positives = 71/118 (60%), Frame = +3

Query:   237 NLMVWHRTIPGKTGTDWEGGYFPLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 416
             N++ W   I G   T +E G F L+L F+E+YP+KPP  KF    FHPNVY  G++CL I
Sbjct:    45 NILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDI 104

Query:   417 LNEDSGWRPAITVKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             L   + W P   V  IL  IQ LLD+PNP  PA +    L+ ++  EY++RV+Q  +Q
Sbjct:   105 LQ--NRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQ 160


 >gi|6692118|gb|AAF24583.1|AC007764_25  (AC007764) F22C12.2 [Arabidopsis
            thaliana]
            Length = 146

Frame  3 hits (HSPs):   _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 146
                       0               50              100

  Plus Strand HSPs:

 Score = 269 (94.7 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 57/152 (37%), Positives = 83/152 (54%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A  E       ++  W  TI G + + + GG F +T+H
Sbjct:     1 MASKRILKELKDLQKDPPTSCSAVAE-------DMFHWQATIMGPSDSPYSGGVFLVTIH 53

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPNV  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    54 FPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 111

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D A+Y+   R   ++Y
Sbjct:   112 NPDDPLVPEIAHMYKTDRAKYESTARSWTQKY 143


 >gi|10185167|emb|CAC08543.1|  (AL441603) ubiquitin-conjugating enzyme e2-18 kda
            [Schizosaccharomyces pombe]
            Length = 166

Frame  3 hits (HSPs):   _________________________________________________ 
                        __________________________________________________
Database sequence:     |              |              |              |     | 166
                       0             50            100            150

  Plus Strand HSPs:

 Score = 267 (94.0 bits), Expect = 3.8e-22, P = 3.8e-22
 Identities = 64/162 (39%), Positives = 85/162 (52%), Frame = +3

Query:   126 MSGGIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFP 305
             MS  +A  RL +E K   +N P G  A P    D       W   I G  GT +EGG +P
Sbjct:     1 MSKAMALRRLMKEYKELTENGPDGITAGPSNEDD----FFTWDCLIQGPDGTPFEGGLYP 56

Query:   306 LTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN---------EDSG--WRPAIT 452
              TL F  DYP  PP  KF   FFHPNVY  GTVC+SIL+         E S   W P  +
Sbjct:    57 ATLKFPSDYPLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQS 116

Query:   453 VKQILVGIQDLLDQPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQ 590
             V++IL+ +  +L +PN    A  +   ++ +D  EY R VR+ A++
Sbjct:   117 VEKILLSVMSMLAEPNDESGANIDACKMWREDREEYCRVVRRLARK 162


 >gi|5762457|gb|AAD51109.1|AF176040_1  (AF176040) ubiquitin-conjugating enzyme
            UBC2 [Mesembryanthemum crystallinum]
            Length = 148

Frame  3 hits (HSPs):   _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 266 (93.6 bits), Expect = 4.9e-22, P = 4.9e-22
 Identities = 56/152 (36%), Positives = 83/152 (54%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A P     G  ++  W  TI G + + + GG F +T+H
Sbjct:     1 MASKRILKELKDLQKDPPTSCSAGPV----GE-DMFHWQATIMGPSDSPYAGGLFLVTIH 55

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 113

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   114 NPDDPLVPEIAHMYKTDKGKYESTARSWTQKY 145


 >gi|456568|gb|AAA64427.1|  (L29077) ubiquitin conjugating enzyme [Pisum sativum]
            Length = 148

Frame  3 hits (HSPs):   _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 265 (93.3 bits), Expect = 6.2e-22, P = 6.2e-22
 Identities = 55/152 (36%), Positives = 81/152 (53%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A P        ++  W  TI G   + + GG F +T+H
Sbjct:     1 MASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIVGPADSPYAGGVFLVTIH 55

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 113

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   114 NPDDPLVPEIAHMYKTDRTKYEATARSWTQKY 145


 >gi|464986|sp|P35132|UBC9_ARATH  UBIQUITIN-CONJUGATING ENZYME E2-17 KD 9
            (UBIQUITIN-PROTEIN LIGASE 9) (UBIQUITIN CARRIER PROTEIN 9)
            (UBCAT4B) >gi|421857|pir||S32674 ubiquitin--protein ligase (EC
            6.3.2.19) UBC9 - Arabidopsis thaliana >gi|297884|emb|CAA78714.1|
            (Z14990) ubiquitin conjugating enzyme homolog [Arabidopsis
            thaliana] >gi|349211|gb|AAA32894.1| (L00639) ubiquitin conjugating
            enzyme [Arabidopsis thaliana] >gi|600391|emb|CAA51201.1| (X72626)
            ubiquitin conjugating enzyme E2 [Arabidopsis thaliana]
            >gi|4455355|emb|CAB36765.1| (AL035524) ubiquitin-protein ligase
            UBC9 [Arabidopsis thaliana] >gi|7269650|emb|CAB79598.1| (AL161572)
            ubiquitin-protein ligase UBC9 [Arabidopsis thaliana]
            Length = 148

Frame  3 hits (HSPs):   _________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 42..89
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 85
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..144
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       2..143
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________


  Plus Strand HSPs:

 Score = 264 (92.9 bits), Expect = 7.9e-22, P = 7.9e-22
 Identities = 55/152 (36%), Positives = 82/152 (53%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A P        ++  W  TI G + + + GG F +T+H
Sbjct:     1 MASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPSDSPYSGGVFLVTIH 55

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 113

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   114 NPDDPLVPEIAHMYKTDKNKYESTARTWTQKY 145


 >gi|11762186|gb|AAG40371.1|AF325019_1  (AF325019) AT4g27960 [Arabidopsis
            thaliana]
            Length = 178

Frame  3 hits (HSPs):           _________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 264 (92.9 bits), Expect = 7.9e-22, P = 7.9e-22
 Identities = 55/152 (36%), Positives = 82/152 (53%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A P        ++  W  TI G + + + GG F +T+H
Sbjct:    31 MASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPSDSPYSGGVFLVTIH 85

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    86 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 143

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   144 NPDDPLVPEIAHMYKTDKNKYESTARTWTQKY 175


 >gi|464987|sp|P35133|UBCA_ARATH  UBIQUITIN-CONJUGATING ENZYME E2-17 KD 10
            (UBIQUITIN-PROTEIN LIGASE 10) (UBIQUITIN CARRIER PROTEIN 10)
            >gi|421858|pir||S32672 ubiquitin--protein ligase (EC 6.3.2.19)
            UBC10 - Arabidopsis thaliana >gi|297878|emb|CAA78715.1| (Z14991)
            ubiquitin conjugating enzyme [Arabidopsis thaliana]
            >gi|349213|gb|AAA32895.1| (L00640) ubiquitin conjugating enzyme
            [Arabidopsis thaliana] >gi|9759177|dbj|BAB09792.1| (AB013388)
            ubiquitin-conjugating enzyme E2-17 kD 10 (ubiquitin-protein ligase
            10) (ubiquitin carrier protein 10) [Arabidopsis thaliana]
            >gi|11692932|gb|AAG40069.1|AF324718_1 (AF324718) K19E1.10
            [Arabidopsis thaliana] >gi|11762158|gb|AAG40357.1|AF325005_1
            (AF325005) F17O14.16 [Arabidopsis thaliana]
            >gi|11908050|gb|AAG41454.1|AF326872_1 (AF326872) putative
            ubiquitin-conjugating enzyme E2-17 kD 10(ubiquitin-protein ligase
            10)(ubiquitin carrier protein10) [Arabidopsis thaliana]
            Length = 148

Frame  3 hits (HSPs):   _________________________________________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100
__________________

Annotated Domains:
   BLOCKS               BL00183: Ubiquitin-conjugating enzymes p 42..89
   DOMO                 DM00225: UBIQUITIN-CONJUGATINGENZYMES    1..146
   Entrez               binding site: UBIQUITIN (BY SIMILARITY). 85
   PFAM                 UQ_con: Ubiquitin-conjugating enzyme     1..144
   PRODOM               PD000461: UBC2(10) UBC4(7) UBC7(7)       2..143
   PROSITE              UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________


  Plus Strand HSPs:

 Score = 263 (92.6 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 55/152 (36%), Positives = 82/152 (53%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A P        ++  W  TI G + + + GG F +T+H
Sbjct:     1 MASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPSESPYAGGVFLVTIH 55

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 113

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D  +Y+   R   ++Y
Sbjct:   114 NPDDPLVPEIAHMYKTDKNKYESTARSWTQKY 145


 >gi|441457|emb|CAA51821.1|  (X73419) ubiquitin conjugating enzyme E2
            [Lycopersicon esculentum]
            Length = 148

Frame  3 hits (HSPs):   _________________________________________________ 
                        __________________________________________________
Database sequence:     |                |                |                | 148
                       0               50              100

  Plus Strand HSPs:

 Score = 263 (92.6 bits), Expect = 1.0e-21, P = 1.0e-21
 Identities = 54/152 (35%), Positives = 82/152 (53%), Frame = +3

Query:   138 IARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHRTIPGKTGTDWEGGYFPLTLH 317
             +A  R+ +E K  +K+ P    A P        ++  W  TI G   + + GG F +T+H
Sbjct:     1 MASKRILKELKDLQKDPPTSCSAGPVA-----EDMFHWQATIMGPADSPYSGGVFLVTIH 55

Query:   318 FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLDQP 497
             F  DYP KPPK  F    FHPN+  +G++CL IL E   W PA+T+ ++L+ I  LL  P
Sbjct:    56 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ--WSPALTISKVLLSICSLLTDP 113

Query:   498 NPADPAQTEGYHLFIQDAAEYKRRVRQQAKQY 593
             NP DP   E  H++  D ++Y+   R   +++
Sbjct:   114 NPDDPLVPEIAHMYKTDRSKYETTARSWTQKF 145


WARNING:  HSPs involving 267 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=6.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.327   0.144   0.480  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.346   0.150   0.579  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.335   0.143   0.438  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.349   0.153   0.541  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.337   0.144   0.490  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.344   0.151   0.563  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      216       215       10.  77 3  12 22  0.10    35
                                                    32  0.11    38
   +2      0      216       215       10.  77 3  12 22  0.10    35
                                                    32  0.11    38
   +1      0      217       215       10.  77 3  12 22  0.10    35
                                                    32  0.11    38
   -1      0      217       215       10.  77 3  12 22  0.10    35
                                                    32  0.11    38
   -2      0      216       214       10.  77 3  12 22  0.10    35
                                                    31  0.11    38
   -3      0      216       215       10.  77 3  12 22  0.10    35
                                                    32  0.11    38


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  317
  No. of states in DFA:  595 (59 KB)
  Total size of DFA:  252 KB (256 KB)
  Time to generate neighborhood:  0.02u 0.00s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  243.46u 1.01s 244.47t  Elapsed: 00:01:24
  Total cpu time:  243.52u 1.07s 244.59t  Elapsed: 00:01:25
  Start:  Fri Jan 18 13:46:54 2002   End:  Fri Jan 18 13:48:19 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000