R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 152 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7486321|pir||T05103 hypothetical protein F28M20.140 - Arabidopsis thaliana
>gi|3281861|emb|CAA19756.1| (AL031004) putative protein
[Arabidopsis thaliana] >gi|7270070|emb|CAB79885.1| (AL161579)
putative protein [Arabidopsis thaliana]
Length = 631
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 631
0 150 300 450 600
Plus Strand HSPs:
Score = 309 (108.8 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
Identities = 57/78 (73%), Positives = 68/78 (87%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSP 183
L G+NMYKC+ C DYVKA KRLT++ APNILTIALKR+Q GR+GKLNKRI+FPETL+L+P
Sbjct: 343 LHGDNMYKCDRCSDYVKACKRLTIRRAPNILTIALKRYQGGRYGKLNKRISFPETLDLNP 402
Query: 184 YMSEAGDGSDIYS-YMVL 234
YMSE GDGSD+Y Y V+
Sbjct: 403 YMSEGGDGSDVYKLYAVI 420
Score = 269 (94.7 bits), Expect = 1.2e-51, Sum P(2) = 1.2e-51
Identities = 49/65 (75%), Positives = 58/65 (89%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
LY V+VH+DMLNASFFGHYICYIKDF GNWYRIDD ++ +VE+E++LSQ AYMLLYSR
Sbjct: 416 LYAVIVHLDMLNASFFGHYICYIKDFCGNWYRIDDSEIESVELEDVLSQRAYMLLYSRIQ 475
Query: 402 ARTSS 416
AR+SS
Sbjct: 476 ARSSS 480
>gi|4572681|gb|AAD23896.1|AC006954_17 (AC006954) putative ubiquitin carboxyl
terminal hydrolase [Arabidopsis thaliana]
Length = 743
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 743
0 150 300 450 600
Plus Strand HSPs:
Score = 304 (107.0 bits), Expect = 3.6e-49, Sum P(2) = 3.6e-49
Identities = 55/78 (70%), Positives = 66/78 (84%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSP 183
L G+N+YKC+ C DYVKA KRL+++CAPNILTIALKRFQ GRFGKLNKRI+FPET +L P
Sbjct: 402 LQGDNLYKCDRCDDYVKACKRLSIRCAPNILTIALKRFQGGRFGKLNKRISFPETFDLGP 461
Query: 184 YMSEAGDGSDIYS-YMVL 234
YMS G+GSD+Y Y V+
Sbjct: 462 YMSGGGEGSDVYKLYAVI 479
Score = 254 (89.4 bits), Expect = 3.6e-49, Sum P(2) = 3.6e-49
Identities = 45/58 (77%), Positives = 53/58 (91%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY V+VH+DMLNASFFGHYICY+KDF+GNWYRIDD +V VE+E++LSQ AYMLLYSR
Sbjct: 475 LYAVIVHLDMLNASFFGHYICYVKDFRGNWYRIDDSEVEKVELEDVLSQRAYMLLYSR 532
>gi|5734755|gb|AAD50020.1|AC007651_15 (AC007651) Unknown protein [Arabidopsis
thaliana]
Length = 891
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 891
0 150 300 450 600 750
Plus Strand HSPs:
Score = 232 (81.7 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 44/78 (56%), Positives = 57/78 (73%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSP 183
LDGENMY+C C YV+A K L++ APNILTI LKRFQ GR+GK+NK I+FPE L++ P
Sbjct: 580 LDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQEGRYGKINKCISFPEMLDMIP 639
Query: 184 YMSEAGDGSDIYS-YMVL 234
+M+ GD +Y Y V+
Sbjct: 640 FMTRTGDVPPLYMLYAVI 657
Score = 206 (72.5 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 36/62 (58%), Positives = 47/62 (75%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
LY V+VH+D LNASF GHYI Y+KD +GNWYRIDD ++ V + +++S+GAYML Y R
Sbjct: 653 LYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQVMSEGAYMLFYMRSY 712
Query: 402 AR 407
R
Sbjct: 713 PR 714
>gi|11993475|gb|AAG42756.1|AF302665_1 (AF302665) ubiquitin-specific protease 15
[Arabidopsis thaliana]
Length = 924
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 924
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 232 (81.7 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 44/78 (56%), Positives = 57/78 (73%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSP 183
LDGENMY+C C YV+A K L++ APNILTI LKRFQ GR+GK+NK I+FPE L++ P
Sbjct: 613 LDGENMYRCSRCAGYVRARKELSIHEAPNILTIVLKRFQEGRYGKINKCISFPEMLDMIP 672
Query: 184 YMSEAGDGSDIYS-YMVL 234
+M+ GD +Y Y V+
Sbjct: 673 FMTRTGDVPPLYMLYAVI 690
Score = 206 (72.5 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 36/62 (58%), Positives = 47/62 (75%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
LY V+VH+D LNASF GHYI Y+KD +GNWYRIDD ++ V + +++S+GAYML Y R
Sbjct: 686 LYAVIVHLDTLNASFSGHYISYVKDLRGNWYRIDDSEIHPVPMTQVMSEGAYMLFYMRSY 745
Query: 402 AR 407
R
Sbjct: 746 PR 747
>gi|7485969|pir||T05578 hypothetical protein F22K18.240 - Arabidopsis thaliana
>gi|4220534|emb|CAA23007.1| (AL035356) putative protein
[Arabidopsis thaliana] >gi|7269306|emb|CAB79366.1| (AL161561)
putative protein [Arabidopsis thaliana]
Length = 1008
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 1008
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 231 (81.3 bits), Expect = 5.0e-36, Sum P(2) = 5.0e-36
Identities = 45/79 (56%), Positives = 58/79 (73%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLS 180
+LDGEN Y+C CK Y +A K+L + PN+LTIALKRFQ+G+FGKLNK I FPETL+L+
Sbjct: 716 ILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQAGKFGKLNKLIRFPETLDLA 775
Query: 181 PYMSEAGDGSDIYS-YMVL 234
PY+S + S Y Y V+
Sbjct: 776 PYVSGGSEKSHDYKLYGVI 794
Score = 208 (73.2 bits), Expect = 5.0e-36, Sum P(2) = 5.0e-36
Identities = 34/60 (56%), Positives = 50/60 (83%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
LYGV+VH+D++NA+F GHY+CYI++ Q WY+ DD V+T +VE +L++GAYML Y+RC+
Sbjct: 790 LYGVIVHLDVMNAAFSGHYVCYIRN-QNKWYKADDSTVVTSDVERILTKGAYMLFYARCT 848
>gi|11993477|gb|AAG42757.1|AF302666_1 (AF302666) ubiquitin-specific protease 16
[Arabidopsis thaliana]
Length = 1008
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 1008
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 231 (81.3 bits), Expect = 5.0e-36, Sum P(2) = 5.0e-36
Identities = 45/79 (56%), Positives = 58/79 (73%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLS 180
+LDGEN Y+C CK Y +A K+L + PN+LTIALKRFQ+G+FGKLNK I FPETL+L+
Sbjct: 716 ILDGENKYRCGSCKSYERAKKKLKITEPPNVLTIALKRFQAGKFGKLNKLIRFPETLDLA 775
Query: 181 PYMSEAGDGSDIYS-YMVL 234
PY+S + S Y Y V+
Sbjct: 776 PYVSGGSEKSHDYKLYGVI 794
Score = 208 (73.2 bits), Expect = 5.0e-36, Sum P(2) = 5.0e-36
Identities = 34/60 (56%), Positives = 50/60 (83%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
LYGV+VH+D++NA+F GHY+CYI++ Q WY+ DD V+T +VE +L++GAYML Y+RC+
Sbjct: 790 LYGVIVHLDVMNAAFSGHYVCYIRN-QNKWYKADDSTVVTSDVERILTKGAYMLFYARCT 848
>gi|9759625|dbj|BAB11567.1| (AB011479) contains similarity to ubiquitin
carboxyl-terminal hydrolase~gene_id:MNA5.19 [Arabidopsis thaliana]
Length = 731
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 731
0 150 300 450 600
Plus Strand HSPs:
Score = 215 (75.7 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
Identities = 45/80 (56%), Positives = 55/80 (68%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLS 180
+LDGEN Y C CK Y KA K+L + PNILT+ LKRFQS FGKL+K I FPE L++S
Sbjct: 500 VLDGENRYFCGRCKSYQKAKKKLMILEGPNILTVVLKRFQSDNFGKLSKPIHFPELLDIS 559
Query: 181 PYMSEAGDGSD-IYS-YMVL 234
PYMS+ G +YS Y V+
Sbjct: 560 PYMSDPNHGDHPVYSLYAVV 579
Score = 195 (68.6 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
Identities = 35/65 (53%), Positives = 47/65 (72%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
LY VVVH+D ++ F GHY+CYIK G+W++IDD V V++E +L +GAYMLLY+R S
Sbjct: 575 LYAVVVHLDAMSTLFSGHYVCYIKTLDGDWFKIDDSNVFPVQLETVLLEGAYMLLYARDS 634
Query: 402 ARTSS 416
R S
Sbjct: 635 PRPVS 639
>gi|10434352|dbj|BAB14232.1| (AK022759) unnamed protein product [Homo sapiens]
Length = 1198
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | 1198
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 174 (61.3 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 36/78 (46%), Positives = 49/78 (62%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSP 183
LDGEN YKC CK V A KR T+ + N+LT++LKRF + GK+ K + +PE L++ P
Sbjct: 283 LDGENSYKCSKCKKMVPASKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRP 342
Query: 184 YMSEAGDGSDIYS-YMVL 234
YMS+ +Y Y VL
Sbjct: 343 YMSQPNGEPIVYVLYAVL 360
Score = 126 (44.4 bits), Expect = 3.4e-21, Sum P(2) = 3.4e-21
Identities = 27/58 (46%), Positives = 35/58 (60%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY V+VH N GHY CYIK G WY+++D V T ++ +LSQ AY+L Y R
Sbjct: 356 LYAVLVHTGF-NCHA-GHYFCYIKASNGLWYQMNDSIVSTSDIRSVLSQQAYVLFYIR 411
>gi|10434580|dbj|BAB14306.1| (AK022913) unnamed protein product [Homo sapiens]
Length = 548
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 548
0 150 300 450
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 35/79 (44%), Positives = 47/79 (59%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLS 180
+L GEN Y C CK V A KR T+ N+LT++LKRF + GK+ K + +PE LN+
Sbjct: 293 VLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLNIR 352
Query: 181 PYMSEAGDGSDIYS-YMVL 234
PYMS+ +Y Y VL
Sbjct: 353 PYMSQNNGDPVMYGLYAVL 371
Score = 117 (41.2 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 24/58 (41%), Positives = 35/58 (60%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY V+VH + GHY CY+K G WY+++D V + V+ +L+Q AY+L Y R
Sbjct: 367 LYAVLVHSGY--SCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLR 422
>gi|9758368|dbj|BAB08869.1| (AB013396) contains similarity to deubiquitinating
enzyme~gene_id:MTI20.25 [Arabidopsis thaliana]
Length = 829
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 829
0 150 300 450 600 750
Plus Strand HSPs:
Score = 159 (56.0 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 34/80 (42%), Positives = 54/80 (67%), Frame = +1
Query: 1 LLD-GENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNL 177
LLD G +Y+CE CK VKA K+LTV AP +LT+ LKRF++ R K+++++ F +++
Sbjct: 249 LLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRFEAHRSEKIDRKVDFTSAIDM 308
Query: 178 SPYMSEAGDGSDIYS-YMVL 234
P++S +G+ Y+ Y VL
Sbjct: 309 KPFVSGPHEGNLKYTLYGVL 328
Score = 131 (46.1 bits), Expect = 1.5e-20, Sum P(2) = 1.5e-20
Identities = 25/58 (43%), Positives = 36/58 (62%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LYGV+VH +S GHY C+++ G WY +DD +V+ V + + +Q AYML Y R
Sbjct: 324 LYGVLVHYG--RSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFYVR 379
>gi|11993486|gb|AAG42761.1|AF302671_1 (AF302671) ubiquitin-specific protease 23
[Arabidopsis thaliana]
Length = 859
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 859
0 150 300 450 600 750
Plus Strand HSPs:
Score = 159 (56.0 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 34/80 (42%), Positives = 54/80 (67%), Frame = +1
Query: 1 LLD-GENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNL 177
LLD G +Y+CE CK VKA K+LTV AP +LT+ LKRF++ R K+++++ F +++
Sbjct: 279 LLDNGAKVYQCERCKQKVKAKKQLTVSKAPYVLTVHLKRFEAHRSEKIDRKVDFTSAIDM 338
Query: 178 SPYMSEAGDGSDIYS-YMVL 234
P++S +G+ Y+ Y VL
Sbjct: 339 KPFVSGPHEGNLKYTLYGVL 358
Score = 131 (46.1 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
Identities = 25/58 (43%), Positives = 36/58 (62%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LYGV+VH +S GHY C+++ G WY +DD +V+ V + + +Q AYML Y R
Sbjct: 354 LYGVLVHYG--RSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFYVR 409
>gi|11993490|gb|AAG42763.1|AF302673_1 (AF302673) ubiquitin-specific protease 25
[Arabidopsis thaliana]
Length = 661
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 661
0 150 300 450 600
Plus Strand HSPs:
Score = 159 (56.0 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 35/66 (53%), Positives = 47/66 (71%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFG-KLNKRIAFPETLNL 177
+LDG N Y+CE C+ V A K++++ APNIL I LKRF G FG K++K I+F E L L
Sbjct: 204 ILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRF-GGIFGGKIDKAISFGEILVL 262
Query: 178 SPYMSEA 198
S +MS+A
Sbjct: 263 SNFMSKA 269
Score = 126 (44.4 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 26/65 (40%), Positives = 39/65 (60%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
L+G++VH S GHY Y+KD G WY +D V ++E+LS+ AY+L +SR +
Sbjct: 279 LFGIIVHSGFSPES--GHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSN 336
Query: 402 ARTSS 416
R +S
Sbjct: 337 QRPAS 341
>gi|7023072|dbj|BAA91825.1| (AK001671) unnamed protein product [Homo sapiens]
Length = 954
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 954
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 35/79 (44%), Positives = 47/79 (59%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLS 180
+L GEN Y C CK V A KR T+ N+LT++LKRF + GK+ K + +PE LN+
Sbjct: 293 VLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLNIR 352
Query: 181 PYMSEAGDGSDIYS-YMVL 234
PYMS+ +Y Y VL
Sbjct: 353 PYMSQNNGDPVMYGLYAVL 371
Score = 117 (41.2 bits), Expect = 7.2e-20, Sum P(2) = 7.2e-20
Identities = 24/58 (41%), Positives = 35/58 (60%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY V+VH + GHY CY+K G WY+++D V + V+ +L+Q AY+L Y R
Sbjct: 367 LYAVLVHSGY--SCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLR 422
>gi|7959165|dbj|BAA95977.1| (AB040886) KIAA1453 protein [Homo sapiens]
Length = 1123
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | 1123
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 35/79 (44%), Positives = 47/79 (59%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLS 180
+L GEN Y C CK V A KR T+ N+LT++LKRF + GK+ K + +PE LN+
Sbjct: 295 VLSGENAYMCAKCKKKVPASKRFTIHRTSNVLTLSLKRFANFSGGKITKDVGYPEFLNIR 354
Query: 181 PYMSEAGDGSDIYS-YMVL 234
PYMS+ +Y Y VL
Sbjct: 355 PYMSQNNGDPVMYGLYAVL 373
Score = 117 (41.2 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 24/58 (41%), Positives = 35/58 (60%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY V+VH + GHY CY+K G WY+++D V + V+ +L+Q AY+L Y R
Sbjct: 369 LYAVLVHSGY--SCHAGHYYCYVKASNGQWYQMNDSLVHSSNVKVVLNQQAYVLFYLR 424
>gi|7493559|pir||T41069 ubiquitin carboxyl-terminal hydrolase - fission yeast
(Schizosaccharomyces pombe) >gi|3560166|emb|CAA20678.1| (AL031525)
ubiquitin carboxyl-terminal hydrolase [Schizosaccharomyces pombe]
Length = 457
Frame 3 hits (HSPs): ________
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | || 457
0 150 300 450
Plus Strand HSPs:
Score = 167 (58.8 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 33/66 (50%), Positives = 45/66 (68%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRF--GKLNKRIAFPETLNL 177
L +N Y+CE CK V A K++T+ APNILTI KRF F K++K+I++PE+ NL
Sbjct: 299 LTKQNKYRCENCKQLVDASKQMTIYRAPNILTIHFKRFTFNGFQSSKISKQISYPESFNL 358
Query: 178 SPYMSE 195
PYMS+
Sbjct: 359 GPYMSD 364
Score = 101 (35.6 bits), Expect = 4.4e-19, Sum P(2) = 4.4e-19
Identities = 24/64 (37%), Positives = 33/64 (51%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
L GV+VH S GHY + K G W + DD V ++ +L+Q AY+L Y R S
Sbjct: 373 LIGVLVHAGGSTRS--GHYYSFCKSSNGVWLKFDDDFVSNSSIDRVLNQQAYILQYKRKS 430
Query: 402 ARTS 413
+S
Sbjct: 431 TSSS 434
>gi|6681237 ref|NP_031913.1| deubiquitinating enzyme 1 [Mus musculus]
>gi|2501457|sp|Q61068|UBPW_MOUSE UBIQUITIN CARBOXYL-TERMINAL
HYDROLASE DUB-1 (UBIQUITIN THIOLESTERASE DUB-1) (UBIQUITIN-SPECIFIC
PROCESSING PROTEASE DUB-1) (DEUBIQUITINATING ENZYME 1)
>gi|7513621|pir||JC6133 deubiquitinating enzyme - mouse
>gi|1302630|gb|AAC52532.1| (U41636) DUB-1 [Mus musculus]
Length = 526
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 526
0 150 300 450
Plus Strand HSPs:
Score = 143 (50.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 31/78 (39%), Positives = 46/78 (58%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSP 183
L G+N Y C C+ + A K L V AP +L + L RF + KL++++++PE L+L P
Sbjct: 219 LCGDNAYYCGKCRQKMPASKTLHVHIAPKVLMVVLNRFSAFTGNKLDRKVSYPEFLDLKP 278
Query: 184 YMSEAGDGSDIYS-YMVL 234
Y+SE G Y+ Y VL
Sbjct: 279 YLSEPTGGPLPYALYAVL 296
Score = 124 (43.7 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 24/56 (42%), Positives = 34/56 (60%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLY 389
LY V+VH + S GHY C +K G WY++DD KV +V +L++ AY+L Y
Sbjct: 292 LYAVLVHDGATSHS--GHYFCCVKAGHGKWYKMDDTKVTRCDVTSVLNENAYVLFY 345
>gi|6753692 ref|NP_034219.1| deubiquitinating enzyme 2 [Mus musculus]
>gi|2739431|gb|AAB95194.1| (U70368) hematopoietic-specific IL-2
deubiquitinating enzyme [Mus musculus]
Length = 545
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 545
0 150 300 450
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 31/78 (39%), Positives = 47/78 (60%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSP 183
L GEN Y C C+ + A K L + AP +L + LKRF + KL++++++PE L+L P
Sbjct: 219 LRGENAYYCGRCRQKMPASKTLHIHSAPKVLLLVLKRFSAFMGNKLDRKVSYPEFLDLKP 278
Query: 184 YMSEAGDGSDIYS-YMVL 234
Y+S+ G Y+ Y VL
Sbjct: 279 YLSQPTGGPLPYALYAVL 296
Score = 119 (41.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 24/56 (42%), Positives = 34/56 (60%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLY 389
LY V+VH S GHY Y+K G WY++DD KV + +V +L++ AY+L Y
Sbjct: 292 LYAVLVHEGATCHS--GHYFSYVKARHGAWYKMDDTKVTSCDVTSVLNENAYVLFY 345
>gi|2739433|gb|AAB94636.1| (U70369) hematopoietic-specific IL-2
deubiquitinating enzyme [Mus musculus]
Length = 545
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 545
0 150 300 450
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 31/78 (39%), Positives = 47/78 (60%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSP 183
L GEN Y C C+ + A K L + AP +L + LKRF + KL++++++PE L+L P
Sbjct: 219 LRGENAYYCGRCRQKMPASKTLHIHSAPKVLLLVLKRFSAFMGNKLDRKVSYPEFLDLKP 278
Query: 184 YMSEAGDGSDIYS-YMVL 234
Y+S+ G Y+ Y VL
Sbjct: 279 YLSQPTGGPLPYALYAVL 296
Score = 119 (41.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 24/56 (42%), Positives = 34/56 (60%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLY 389
LY V+VH S GHY Y+K G WY++DD KV + +V +L++ AY+L Y
Sbjct: 292 LYAVLVHEGATCHS--GHYFSYVKARHGAWYKMDDTKVTSCDVTSVLNENAYVLFY 345
>gi|9279587|dbj|BAB01045.1| (AB022220) contains similarity to ubiquitin
specific protease~gene_id:MLN21.18 [Arabidopsis thaliana]
Length = 632
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 632
0 150 300 450 600
Plus Strand HSPs:
Score = 161 (56.7 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 36/70 (51%), Positives = 48/70 (68%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFG-KLNKRIAFPETLNL 177
+LDG N Y+CE C+ V A K++++ APNIL I LKRF G FG K++K I+F E L L
Sbjct: 204 ILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRF-GGIFGGKIDKAISFGEILVL 262
Query: 178 SPYMSEAGDGS 210
S +MS+A S
Sbjct: 263 SNFMSKASKDS 273
Score = 80 (28.2 bits), Expect = 9.1e-16, Sum P(2) = 9.1e-16
Identities = 17/42 (40%), Positives = 26/42 (61%), Frame = +3
Query: 291 KDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCSARTSS 416
KD G WY +D V ++E+LS+ AY+L +SR + R +S
Sbjct: 271 KDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSNQRPAS 312
>gi|3334400|sp|Q24574|UBPE_DROME UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 64E
(UBIQUITIN THIOLESTERASE 64E) (UBIQUITIN-SPECIFIC PROCESSING
PROTEASE 64E) (DEUBIQUITINATING ENZYME 64E)
>gi|1429371|emb|CAA67601.1| (X99211) ubiquitin-specific protease
[Drosophila melanogaster]
Length = 898
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): _____
Annotated Domains: __________ _______________________________________
__________________________________________________
Database sequence: | | | | | | | 898
0 150 300 450 600 750
__________________
Annotated Domains:
BLOCKS BL00972A: Ubiquitin carboxyl-terminal hy 56..73
BLOCKS BL00972B: Ubiquitin carboxyl-terminal hy 132..141
BLOCKS BL00972C: Ubiquitin carboxyl-terminal hy 161..175
BLOCKS BL00972D: Ubiquitin carboxyl-terminal hy 362..386
BLOCKS BL00972E: Ubiquitin carboxyl-terminal hy 389..410
Entrez active site: BY SIMILARITY. 64
Entrez active site: BY SIMILARITY. 371
Entrez active site: BY SIMILARITY. 379
Entrez Domain: POLY-SER. 633..638
PFAM UCH-1: Ubiquitin carboxyl-terminal hydro 55..86
PFAM UCH-2: Ubiquitin carboxyl-terminal hydro 359..437
PRODOM PD119486: UBPE_DROME 1..51
PRODOM PD000590: UBPD(3) UBPB(3) UBP4(3) 53..180
PRODOM PD017412: UBPB(3) UBPE(3) UBP4(3) 201..284
PRODOM PD119484: UBPE_DROME 286..361
PRODOM PD000867: UBPE(4) UBPB(3) UBP4(3) 363..399
PRODOM PD143046: UBPE_DROME 401..897
PROSITE UCH_2_2: Ubiquitin carboxyl-terminal hyd 363..380
__________________
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 33/74 (44%), Positives = 44/74 (59%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRF----QSGRFGKLNKRIAFPETL 171
LDG N Y CE CK A K L K P ILT+ LKRF Q+ KLN R+ FP+TL
Sbjct: 221 LDGNNQYLCEKCKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTL 280
Query: 172 NLSPYMSEAGDGSD 213
NL+ +++ +G+ +
Sbjct: 281 NLNTFINRSGNSGE 294
Score = 81 (28.5 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 23/65 (35%), Positives = 34/65 (52%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGN-WYRIDDWKVMTVEVEELLSQ--GAYMLLYS 392
L+ +++H + GHY YIKDF N W+ +D V ++ E++ G YS
Sbjct: 365 LFAIMIHSGSASG---GHYYAYIKDFDNNEWFCFNDQNVTSITQEDIQRSFGGPNGSYYS 421
Query: 393 RCSARTSS 416
SA TSS
Sbjct: 422 --SAYTSS 427
Score = 37 (13.0 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 7/15 (46%), Positives = 10/15 (66%), Frame = +3
Query: 363 SQGAYMLLYSRCSAR 407
S AYML+Y + A+
Sbjct: 427 STNAYMLMYRQVDAK 441
>gi|7295436|gb|AAF50752.1| (AE003565) Ubp64E gene product [Drosophila
melanogaster]
Length = 1248
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | | 1248
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 146 (51.4 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 33/74 (44%), Positives = 44/74 (59%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRF----QSGRFGKLNKRIAFPETL 171
LDG N Y CE CK A K L K P ILT+ LKRF Q+ KLN R+ FP+TL
Sbjct: 254 LDGNNQYLCEKCKKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTL 313
Query: 172 NLSPYMSEAGDGSD 213
NL+ +++ +G+ +
Sbjct: 314 NLNTFINRSGNSGE 327
Score = 81 (28.5 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
Identities = 23/65 (35%), Positives = 34/65 (52%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGN-WYRIDDWKVMTVEVEELLSQ--GAYMLLYS 392
L+ +++H + GHY YIKDF N W+ +D V ++ E++ G YS
Sbjct: 398 LFAIMIHSGSASG---GHYYAYIKDFDNNEWFCFNDQNVTSITQEDIQRSFGGPNGSYYS 454
Query: 393 RCSARTSS 416
SA TSS
Sbjct: 455 --SAYTSS 460
Score = 37 (13.0 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 7/15 (46%), Positives = 10/15 (66%), Frame = +3
Query: 363 SQGAYMLLYSRCSAR 407
S AYML+Y + A+
Sbjct: 460 STNAYMLMYRQVDAK 474
>gi|11993469|gb|AAG42753.1|AF302662_1 (AF302662) ubiquitin-specific protease 8
[Arabidopsis thaliana]
Length = 470
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 470
0 150 300 450
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 32/78 (41%), Positives = 46/78 (58%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRF--GKLNKRIAFP-ETLN 174
L ++M+ C GCK++ +A K+L + P IL I LKRF RF KL + FP + L+
Sbjct: 336 LGPDDMWYCPGCKEHRQAIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLD 395
Query: 175 LSPYMSEAGDGSDIYSYMV 231
LS Y+S +G Y YM+
Sbjct: 396 LSSYISYK-NGQTTYRYML 413
Score = 86 (30.3 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 18/58 (31%), Positives = 26/58 (44%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY + H + GHY Y+ WY DD V + E++ + AY+L Y R
Sbjct: 413 LYAISNHYGSMGG---GHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKR 467
>gi|11640586|gb|AAG39290.1|AF113219_1 (AF113219) MSTP039 [Homo sapiens]
Length = 644
Frame 3 hits (HSPs): ___ ___
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 644
0 150 300 450 600
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 23/49 (46%), Positives = 32/49 (65%), Frame = +1
Query: 46 YVKAWKRLTVKCAPNILTIALKRFQSGRFG--KLNKRIAFPETLNLSPY 186
Y A K++ + AP +LT+ LKRFQ F K+NK I FPE L+L+P+
Sbjct: 498 YTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPF 546
Score = 68 (23.9 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 12/32 (37%), Positives = 18/32 (56%), Frame = +3
Query: 300 QGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
+G W+ I D V V ++L+ AY+L Y R
Sbjct: 611 KGQWFHISDTHVQAVPTTKVLNSQAYLLFYER 642
Score = 48 (16.9 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 11/24 (45%), Positives = 13/24 (54%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIK 293
LYGVV H + + GHY Y K
Sbjct: 565 LYGVVEHSGTMRS---GHYTAYAK 585
>gi|9758510|dbj|BAB08918.1| (AB016882) contains similarity to ubiquitin
specific protease~gene_id:MZA15.16 [Arabidopsis thaliana]
Length = 732
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 732
0 150 300 450 600
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 24/58 (41%), Positives = 34/58 (58%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY V HI + A+F GHY Y++ W+ DD KV + E +LS+ AY+L Y+R
Sbjct: 413 LYAFVEHIG-IRATF-GHYSSYVRSAPETWHNFDDSKVTRISEERVLSRPAYILFYAR 468
Score = 95 (33.4 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 24/66 (36%), Positives = 33/66 (50%), Frame = +1
Query: 13 ENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSG--RFGKLNKRIAFPETLNLSPY 186
E+ C+ CK+ V K+L P + T LKRF + K+ I FP L+LSP+
Sbjct: 339 EDQLTCDNCKEKVTKEKQLRFDKLPPVATFHLKRFTNDGVTMEKIFDHIEFPLELDLSPF 398
Query: 187 MSEAGD 204
MS D
Sbjct: 399 MSSNHD 404
>gi|5689451|dbj|BAA83009.1| (AB028980) KIAA1057 protein [Homo sapiens]
Length = 977
Frame 3 hits (HSPs): ___ __
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 977
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 28/66 (42%), Positives = 39/66 (59%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRF----QSGRFGKLNKRIAFPET 168
+L+G N Y CE CK+ KR +K P++L I L RF +SGR K +++I FP
Sbjct: 207 VLEGSNAYYCEKCKEKRITVKRTCIKSLPSVLVIHLMRFGFDWESGRSIKYDEQIRFPWM 266
Query: 169 LNLSPY 186
LN+ PY
Sbjct: 267 LNMEPY 272
Score = 69 (24.3 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 16/36 (44%), Positives = 22/36 (61%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQG----NWYRIDD 326
L GV+VH +A GHY +IKD +G WY+ +D
Sbjct: 313 LVGVIVHSGQAHA---GHYYSFIKDRRGCGKGKWYKFND 348
Score = 38 (13.4 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
Identities = 8/14 (57%), Positives = 9/14 (64%), Frame = +3
Query: 372 AYMLLYSRCSARTS 413
AYML Y R S + S
Sbjct: 391 AYMLFYQRVSDQNS 404
>gi|11993482|gb|AAG42759.1|AF302669_1 (AF302669) ubiquitin-specific protease 21
[Arabidopsis thaliana]
Length = 737
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 737
0 150 300 450 600
Plus Strand HSPs:
Score = 115 (40.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 24/58 (41%), Positives = 34/58 (58%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY V HI + A+F GHY Y++ W+ DD KV + E +LS+ AY+L Y+R
Sbjct: 413 LYAFVEHIG-IRATF-GHYSSYVRSAPETWHNFDDSKVTRISEERVLSRPAYILFYAR 468
Score = 95 (33.4 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 24/66 (36%), Positives = 33/66 (50%), Frame = +1
Query: 13 ENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSG--RFGKLNKRIAFPETLNLSPY 186
E+ C+ CK+ V K+L P + T LKRF + K+ I FP L+LSP+
Sbjct: 339 EDQLTCDNCKEKVTKEKQLRFDKLPPVATFHLKRFTNDGVTMEKIFDHIEFPLELDLSPF 398
Query: 187 MSEAGD 204
MS D
Sbjct: 399 MSSNHD 404
>gi|5454156 ref|NP_006438.1| ubiquitin specific protease 16; human ubiquitin
processing protease [Homo sapiens] >gi|11526163 ref|XP_009715.1|
ubiquitin specific protease 16 [Homo sapiens]
>gi|6686071|sp|Q9Y5T5|UBPG_HUMAN UBIQUITIN CARBOXYL-TERMINAL
HYDROLASE 16 (UBIQUITIN THIOLESTERASE 16) (UBIQUITIN-SPECIFIC
PROCESSING PROTEASE 16) (DEUBIQUITINATING ENZYME 16) (UBIQUITIN
PROCESSING PROTEASE UBP-M) >gi|4454565|gb|AAD20949.1| (AF126736)
ubiquitin processing protease [Homo sapiens]
>gi|7717310|emb|CAB90432.1| (AL163249) human ubiquitin processing
protease, EC 3.1.2.15 [Homo sapiens]
Length = 823
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | 823
0 150 300 450 600 750
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 23/49 (46%), Positives = 32/49 (65%), Frame = +1
Query: 46 YVKAWKRLTVKCAPNILTIALKRFQSGRFG--KLNKRIAFPETLNLSPY 186
Y A K++ + AP +LT+ LKRFQ F K+NK I FPE L+L+P+
Sbjct: 677 YTNAKKQMLISLAPPVLTLHLKRFQQAGFNLRKVNKHIKFPEILDLAPF 725
Score = 68 (23.9 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 12/32 (37%), Positives = 18/32 (56%), Frame = +3
Query: 300 QGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
+G W+ I D V V ++L+ AY+L Y R
Sbjct: 790 KGQWFHISDTHVQAVPTTKVLNSQAYLLFYER 821
Score = 48 (16.9 bits), Expect = 4.3e-12, Sum P(3) = 4.3e-12
Identities = 11/24 (45%), Positives = 13/24 (54%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIK 293
LYGVV H + + GHY Y K
Sbjct: 744 LYGVVEHSGTMRS---GHYTAYAK 764
>gi|11360086|pir||T47183 hypothetical protein DKFZp434K1822.1 - human
(fragment) >gi|7328168|emb|CAB82415.1| (AL162082) hypothetical
protein [Homo sapiens]
Length = 264
Frame 3 hits (HSPs): ___________
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 264
0 50 100 150 200 250
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 21/60 (35%), Positives = 37/60 (61%), Frame = +1
Query: 25 KCEGCKDYVKAWKRLTVKCAPNILTIALKRFQ-SGRFG-KLNKRIAFPETLNLSPYMSEA 198
KC GC Y ++ K+LT+K P + LKRF+ S + K+ ++FP L+++P+M+ +
Sbjct: 121 KCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTPFMASS 180
Score = 86 (30.3 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 16/58 (27%), Positives = 30/58 (51%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
L+ VV H L + GHY +I+ + W++ DD + ++++L Y+L Y +
Sbjct: 204 LFAVVNHQGTLES---GHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYHK 258
>gi|5002571|emb|CAB44337.1| (Y17465) LSFR3 protein [Fugu rubripes]
Length = 390
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 390
0 150 300
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 31/83 (37%), Positives = 46/83 (55%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSG-RFG-KLNKRIAFP-ETLN 174
L G+NMY CE CK K V P IL I LKRF+ + K+ ++FP E LN
Sbjct: 30 LKGDNMYSCERCKKLRNGVKYCKVLKLPEILCIHLKRFRHEVMYSFKIGSHVSFPLEGLN 89
Query: 175 LSPYMSEAGDGSDIYSYMVL*YILIC 252
+ P++++ S + +Y +L +IC
Sbjct: 90 MQPFLAKDSP-SQVTTYDLL--SVIC 112
Score = 82 (28.9 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 20/45 (44%), Positives = 25/45 (55%), Frame = +3
Query: 270 GHYICYIKD-FQGNWYRIDDWKVMTVEVEELLSQGA--YMLLYSRCS 401
GHYI Y ++ G WY DD V EV E + Q A Y+L Y + S
Sbjct: 120 GHYIAYCQNVINGQWYEFDDQYV--TEVHETVVQNAEAYVLFYRKSS 164
>gi|7487641|pir||T04194 hypothetical protein T4F9.50 - Arabidopsis thaliana
>gi|4539437|emb|CAB40025.1| (AL049523) putative protein
[Arabidopsis thaliana] >gi|7267756|emb|CAB78182.1| (AL161517)
putative protein [Arabidopsis thaliana]
Length = 937
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 937
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 28/80 (35%), Positives = 44/80 (55%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRF--GKLNKRIAFP-ETLN 174
L ++M+ C CK++ +A K+L + P+IL LKRF R+ K++ + FP L+
Sbjct: 789 LGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLD 848
Query: 175 LSPYMSEAGDGSDIYS-YMV 231
LS Y+ D S +Y Y V
Sbjct: 849 LSKYVKNKNDQSYLYELYAV 868
Score = 97 (34.1 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 24/65 (36%), Positives = 30/65 (46%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGN-WYRIDDWKVMTVEVEELLSQGAYMLLYSRC 398
LY V H L GHY Y K N WY DD V +V E+ + AY+L Y R
Sbjct: 865 LYAVSNHYGGLGG---GHYTAYAKLIDDNEWYHFDDSHVSSVNESEIKNSAAYVLFYRRV 921
Query: 399 SARTSS 416
+ T +
Sbjct: 922 RSETET 927
>gi|10439903|dbj|BAB15591.1| (AK026930) unnamed protein product [Homo sapiens]
Length = 392
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 392
0 150 300
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 28/75 (37%), Positives = 41/75 (54%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRF----QSGRFGKLNKRIAFPETL 171
L+G+N Y CE C+ A +++ + P L + L RF Q+G KLN I F E L
Sbjct: 262 LEGDNRYFCENCQSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNTYIGFSEIL 321
Query: 172 NLSPYMSEAGDGSDIY 219
++ PY+ G GS +Y
Sbjct: 322 DMEPYVEHKG-GSYVY 336
Score = 68 (23.9 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 13/33 (39%), Positives = 23/33 (69%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQ-GNWYRI 320
L V++H + +++ GHYI ++KD Q G WY++
Sbjct: 338 LSAVLIHRGV--SAYSGHYIAHVKDPQSGEWYKL 369
>gi|6323879 ref|NP_013950.1| putative deubiquitinating enzyme; Ubp8p
[Saccharomyces cerevisiae] >gi|1717872|sp|P50102|UBP8_YEAST
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 8 (UBIQUITIN THIOLESTERASE 8)
(UBIQUITIN-SPECIFIC PROCESSING PROTEASE 8) (DEUBIQUITINATING ENZYME
8) >gi|1362393|pir||S57591 hypothetical protein YMR223w - yeast
(Saccharomyces cerevisiae) >gi|887604|emb|CAA90194.1| (Z49939)
unknown [Saccharomyces cerevisiae]
Length = 471
Frame 3 hits (HSPs): _______
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 471
0 150 300 450
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 21/57 (36%), Positives = 33/57 (57%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYS 392
L G+V H +N GHYI + K G W++ +D V ++ EE+L + AY+L Y+
Sbjct: 413 LIGIVSHKGTVNE---GHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYT 466
Score = 87 (30.6 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 22/60 (36%), Positives = 31/60 (51%), Frame = +1
Query: 22 YKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQ---SGRFGKLNKRIAFPETLNLSPYMS 192
Y C C A K+L + P++L + LKRF+ +G KL+ I FP LN+ Y S
Sbjct: 334 YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCS 393
>gi|5823525|gb|AAD53181.1|AF179590_1 (AF179590) ubiquitin-specific protease
nonstop [Drosophila melanogaster]
Length = 735
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 735
0 150 300 450 600
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 19/59 (32%), Positives = 36/59 (61%), Frame = +1
Query: 25 KCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRF--GKLNKRIAFPETLNLSPYMSE 195
KC CK Y ++ K+ +++ P++++ LKRF+ K++ I FP +++P+MSE
Sbjct: 605 KCSTCKSYQESTKQFSLRTLPSVVSFHLKRFEHSALIDRKISSFIQFPVEFDMTPFMSE 663
Score = 91 (32.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 16/58 (27%), Positives = 30/58 (51%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY VV H+ ++ GHY Y++ + W + DD + ++++L Y+L Y +
Sbjct: 675 LYAVVNHVGTIDT---GHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLFYHK 729
>gi|7293885|gb|AAF49249.1| (AE003520) not gene product [Drosophila
melanogaster]
Length = 735
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 735
0 150 300 450 600
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 19/59 (32%), Positives = 36/59 (61%), Frame = +1
Query: 25 KCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRF--GKLNKRIAFPETLNLSPYMSE 195
KC CK Y ++ K+ +++ P++++ LKRF+ K++ I FP +++P+MSE
Sbjct: 605 KCSTCKSYQESTKQFSLRTLPSVVSFHLKRFEHSALIDRKISSFIQFPVEFDMTPFMSE 663
Score = 91 (32.0 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 16/58 (27%), Positives = 30/58 (51%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
LY VV H+ ++ GHY Y++ + W + DD + ++++L Y+L Y +
Sbjct: 675 LYAVVNHVGTIDT---GHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLFYHK 729
>gi|7507228|pir||T24559 hypothetical protein T05H10.1 - Caenorhabditis elegans
(fragment) >gi|3879501|emb|CAA87795.1| (Z47812) contains similarity
to Pfam domain: PF00443 (Ubiquitin carboxyl-terminal hydrolase
family 2), Score=117.4, E-value=8.5e-32, N=1~cDNA EST yk29h8.3
comes from this gene~cDNA EST yk38h6.3 comes from this gene~cDNA
EST yk36f7.3 comes from this gen>
Length = 1292
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 1292
0 500 1000
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 30/69 (43%), Positives = 40/69 (57%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSG-----RFGKLNKRIAFPE 165
LLDG N Y CE CK A K L + P +LTI LKRF R KLN ++ FP+
Sbjct: 228 LLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRI-KLNDKMTFPD 286
Query: 166 TLNLSPYMSE 195
L+L+ Y+++
Sbjct: 287 VLDLNDYVNK 296
Score = 73 (25.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 25/76 (32%), Positives = 39/76 (51%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDF-QGNWYRIDDWKV---MTVEVEELL--------- 362
L+ V+VH NA+ GHY YIK+ Q WY +D +V +E+E+
Sbjct: 372 LFSVMVHSG--NAAG-GHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQ 428
Query: 363 -SQGAYMLLYSRCSARTSS 416
+ AYML+Y R + ++
Sbjct: 429 SNTNAYMLMYRRIDPKRNA 447
Score = 36 (12.7 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 6/13 (46%), Positives = 9/13 (69%), Frame = +3
Query: 285 YIKDFQGNWYRID 323
+IKD Q W R++
Sbjct: 458 HIKDSQEKWKRLE 470
>gi|5730108 ref|NP_006667.1| ubiquitin specific protease 20 [Homo sapiens]
>gi|12643376|sp|Q9Y2K6|UBPK_HUMAN UBIQUITIN CARBOXYL-TERMINAL
HYDROLASE 20 (UBIQUITIN THIOLESTERASE 20) (UBIQUITIN-SPECIFIC
PROCESSING PROTEASE 20) (DEUBIQUITINATING ENZYME 20)
>gi|4589650|dbj|BAA76847.1| (AB023220) KIAA1003 protein [Homo
sapiens]
Length = 913
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | || 913
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 33/83 (39%), Positives = 47/83 (56%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSG-RFG-KLNKRIAFP-ETLN 174
L G+NMY CE CK K V P IL I LKRF+ + K+N ++FP E L+
Sbjct: 551 LKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLD 610
Query: 175 LSPYMSEAGDGSDIYSYMVL*YILIC 252
L P++++ S I +Y +L +IC
Sbjct: 611 LRPFLAKECT-SQITTYDLL--SVIC 633
Score = 82 (28.9 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 20/45 (44%), Positives = 25/45 (55%), Frame = +3
Query: 270 GHYICYIKD-FQGNWYRIDDWKVMTVEVEELLSQGA--YMLLYSRCS 401
GHYI Y ++ G WY DD V EV E + Q A Y+L Y + S
Sbjct: 641 GHYIAYCQNVINGQWYEFDDQYV--TEVHETVVQNAEGYVLFYRKSS 685
>gi|12735188 ref|XP_005624.2| ubiquitin specific protease 20 [Homo sapiens]
Length = 946
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 946
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 33/83 (39%), Positives = 47/83 (56%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSG-RFG-KLNKRIAFP-ETLN 174
L G+NMY CE CK K V P IL I LKRF+ + K+N ++FP E L+
Sbjct: 584 LKGDNMYSCERCKKLRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLD 643
Query: 175 LSPYMSEAGDGSDIYSYMVL*YILIC 252
L P++++ S I +Y +L +IC
Sbjct: 644 LRPFLAKECT-SQITTYDLL--SVIC 666
Score = 82 (28.9 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 20/45 (44%), Positives = 25/45 (55%), Frame = +3
Query: 270 GHYICYIKD-FQGNWYRIDDWKVMTVEVEELLSQGA--YMLLYSRCS 401
GHYI Y ++ G WY DD V EV E + Q A Y+L Y + S
Sbjct: 674 GHYIAYCQNVINGQWYEFDDQYV--TEVHETVVQNAEGYVLFYRKSS 718
>gi|5689463|dbj|BAA83015.1| (AB028986) KIAA1063 protein [Homo sapiens]
Length = 593
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 593
0 150 300 450
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 21/60 (35%), Positives = 37/60 (61%), Frame = +1
Query: 25 KCEGCKDYVKAWKRLTVKCAPNILTIALKRFQ-SGRFG-KLNKRIAFPETLNLSPYMSEA 198
KC GC Y ++ K+LT+K P + LKRF+ S + K+ ++FP L+++P+M+ +
Sbjct: 450 KCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTPFMASS 509
Score = 86 (30.3 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 16/58 (27%), Positives = 30/58 (51%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
L+ VV H L + GHY +I+ + W++ DD + ++++L Y+L Y +
Sbjct: 533 LFAVVNHQGTLES---GHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYHK 587
>gi|5689531|dbj|BAA83049.1| (AB029020) KIAA1097 protein [Homo sapiens]
Length = 980
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 980
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 32/83 (38%), Positives = 48/83 (57%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSG-RFG-KLNKRIAFP-ETLN 174
L G+NMY CE CK K V+ P IL I LKRF+ F K++ ++FP E L+
Sbjct: 620 LKGDNMYSCEKCKKLRNGVKFCKVQNFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLD 679
Query: 175 LSPYMSEAGDGSDIYSYMVL*YILIC 252
L P++++ + I +Y +L +IC
Sbjct: 680 LQPFLAKDSP-AQIVTYDLL--SVIC 702
Score = 81 (28.5 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 17/45 (37%), Positives = 23/45 (51%), Frame = +3
Query: 270 GHYICYIKDFQGN-WYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
GHYI Y ++ N WY DD V V + + AY+L Y + S
Sbjct: 710 GHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSS 754
>gi|11993480|gb|AAG42758.1|AF302668_1 (AF302668) ubiquitin-specific protease 20
[Arabidopsis thaliana]
Length = 695
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 695
0 150 300 450 600
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 22/62 (35%), Positives = 34/62 (54%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
LY +V H A +GHY Y++ W+ DD KV ++ + +LSQ +Y+L Y+R
Sbjct: 420 LYALVEHFGYSVA--YGHYSSYVRSAPKIWHHFDDSKVTRIDEDMVLSQDSYILFYAREG 477
Query: 402 AR 407
R
Sbjct: 478 TR 479
Score = 84 (29.6 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 19/56 (33%), Positives = 31/56 (55%), Frame = +1
Query: 28 CEGCKDYVKAWKRLTVKCAPNILTIALKRFQS-GRF-GKLNKRIAFPETLNLSPYM 189
C+ C + V K+L + P + T LKRF++ G + K+ K + P ++L PYM
Sbjct: 351 CDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLYMEKIYKHVKIPLEIDLQPYM 406
>gi|10434504|dbj|BAB14279.1| (AK022864) unnamed protein product [Homo sapiens]
Length = 828
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 828
0 150 300 450 600 750
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 31/83 (37%), Positives = 48/83 (57%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSG-RFG-KLNKRIAFP-ETLN 174
L G+NMY CE CK K V+ P IL I L+RF+ F K++ ++FP E L+
Sbjct: 574 LKGDNMYSCEKCKKLRNGVKFCKVQNFPEILCIHLRRFRHELMFSTKISTHVSFPLEGLD 633
Query: 175 LSPYMSEAGDGSDIYSYMVL*YILIC 252
L P++++ + I +Y +L +IC
Sbjct: 634 LQPFLAKDSP-AQIVTYDLL--SVIC 656
Score = 81 (28.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 17/45 (37%), Positives = 23/45 (51%), Frame = +3
Query: 270 GHYICYIKDFQGN-WYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
GHYI Y ++ N WY DD V V + + AY+L Y + S
Sbjct: 664 GHYIAYCRNNLNNLWYEFDDQSVTEVSESTVQNAEAYVLFYRKSS 708
>gi|5669678|gb|AAD46422.1|AF105715_1 (AF105715) ubiquitous nuclear protein
[Gallus gallus]
Length = 950
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 950
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 25/70 (35%), Positives = 39/70 (55%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRF--GKLNKRIAFP-ETLN 174
L E+ + C CK++ +A K+L + P +L + LKRF R+ KL+ + FP L+
Sbjct: 770 LGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVGFPINDLD 829
Query: 175 LS-PYMSEAG 201
+S PY AG
Sbjct: 830 MSIPYNPNAG 839
Score = 87 (30.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 16/43 (37%), Positives = 25/43 (58%), Frame = +3
Query: 270 GHYICYIKDFQ-GNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
GHY ++K+ G WY DD V ++++S+ AY+L Y R
Sbjct: 858 GHYTAFVKNKDDGKWYYFDDSSVSIACEDQIVSKAAYVLFYQR 900
>gi|7487780|pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana
>gi|2894598|emb|CAA17132.1| (AL021889) putative protein
[Arabidopsis thaliana] >gi|7268541|emb|CAB78791.1| (AL161547)
putative protein [Arabidopsis thaliana]
Length = 1082
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | | 1082
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/62 (35%), Positives = 34/62 (54%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSRCS 401
LY +V H A +GHY Y++ W+ DD KV ++ + +LSQ +Y+L Y+R
Sbjct: 807 LYALVEHFGYSVA--YGHYSSYVRSAPKIWHHFDDSKVTRIDEDMVLSQDSYILFYAREG 864
Query: 402 AR 407
R
Sbjct: 865 TR 866
Score = 84 (29.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 19/56 (33%), Positives = 31/56 (55%), Frame = +1
Query: 28 CEGCKDYVKAWKRLTVKCAPNILTIALKRFQS-GRF-GKLNKRIAFPETLNLSPYM 189
C+ C + V K+L + P + T LKRF++ G + K+ K + P ++L PYM
Sbjct: 738 CDNCNEKVSKEKQLLLDKLPLVATFHLKRFKNNGLYMEKIYKHVKIPLEIDLQPYM 793
>gi|6014652|gb|AAF01440.1|AF187961_1 (AF187961) ubiquitin carboxyl-terminal
hydrolase [Schizosaccharomyces pombe]
Length = 1129
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | 1129
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 28/79 (35%), Positives = 41/79 (51%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFG----KLNKRIAFPETL 171
L G+N Y EG A K + + PN+L + LKRF K+N R FP +
Sbjct: 389 LTGDNKYYAEG-HGLQDAHKGIIFESLPNVLQLQLKRFDYDMLRDMMVKINDRHEFPLEI 447
Query: 172 NLSPYMSEAGDGSDIYSYMV 231
+L PY+SE D S+ + Y++
Sbjct: 448 DLEPYLSETADKSESHVYVL 467
Score = 78 (27.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 18/47 (38%), Positives = 28/47 (59%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIK-DFQGNWYRIDDWKVMTVEVEELL 362
L+GV+VH L+ GHY IK + NW++ DD +V ++E+L
Sbjct: 467 LHGVLVHGGDLHG---GHYYALIKPEKDSNWFKFDDDRVTRATIKEVL 511
>gi|12311746|emb|CAC22603.1| (AL512943) ubiquitin carboxyl-terminal hydrolase
[Schizosaccharomyces pombe]
Length = 1129
Frame 3 hits (HSPs): ___
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | 1129
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 28/79 (35%), Positives = 41/79 (51%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFG----KLNKRIAFPETL 171
L G+N Y EG A K + + PN+L + LKRF K+N R FP +
Sbjct: 389 LTGDNKYYAEG-HGLQDAHKGIIFESLPNVLQLQLKRFDYDMLRDMMVKINDRHEFPLEI 447
Query: 172 NLSPYMSEAGDGSDIYSYMV 231
+L PY+SE D S+ + Y++
Sbjct: 448 DLEPYLSETADKSESHVYVL 467
Score = 78 (27.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 18/47 (38%), Positives = 28/47 (59%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIK-DFQGNWYRIDDWKVMTVEVEELL 362
L+GV+VH L+ GHY IK + NW++ DD +V ++E+L
Sbjct: 467 LHGVLVHGGDLHG---GHYYALIKPEKDSNWFKFDDDRVTRATIKEVL 511
>gi|11358908|pir||T50788 ubiquitin specific proteinase homolog - Arabidopsis
thaliana >gi|8979713|emb|CAB96834.1| (AL365234) ubiquitin specific
protease-like protein [Arabidopsis thaliana]
Length = 557
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 557
0 150 300 450
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 22/58 (37%), Positives = 33/58 (56%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
++ VV H ML + GHY+ Y++ +G WYR DD + VE E + YML Y++
Sbjct: 477 IFAVVTHKGMLES---GHYVTYLR-LKGLWYRCDDAWINEVEEEVVRGCECYMLFYAQ 530
Score = 86 (30.3 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 18/69 (26%), Positives = 39/69 (56%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRI----AFPETL 171
L + C+ C + ++ K+++++ P +L + +KRF+ K +++I +P L
Sbjct: 376 LGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFEHSLTRKTSRKIDSYLQYPFRL 435
Query: 172 NLSPYMSEA 198
N+SPY+S +
Sbjct: 436 NMSPYLSSS 444
>gi|7487639|pir||T04192 hypothetical protein T4F9.30 - Arabidopsis thaliana
>gi|4539435|emb|CAB40023.1| (AL049523) putative protein
[Arabidopsis thaliana] >gi|7267754|emb|CAB78180.1| (AL161517)
putative protein [Arabidopsis thaliana]
Length = 928
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 928
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 27/80 (33%), Positives = 43/80 (53%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRF--GKLNKRIAFP-ETLN 174
L ++M+ C CK++ +A K+L + P+IL LKRF R+ K++ + FP L+
Sbjct: 768 LGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLD 827
Query: 175 LSPYMSEAGDGSDIYS-YMV 231
LS Y+ S +Y Y V
Sbjct: 828 LSKYVKNKNGQSYLYELYAV 847
Score = 97 (34.1 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 24/65 (36%), Positives = 30/65 (46%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGN-WYRIDDWKVMTVEVEELLSQGAYMLLYSRC 398
LY V H L GHY Y K N WY DD V +V E+ + AY+L Y R
Sbjct: 844 LYAVSNHYGGLGG---GHYTAYAKLIDDNKWYHFDDSHVSSVNESEIRNSAAYVLFYRRV 900
Query: 399 SARTSS 416
+ T +
Sbjct: 901 RSETET 906
>gi|11993484|gb|AAG42760.1|AF302670_1 (AF302670) ubiquitin-specific protease 22
[Arabidopsis thaliana]
Length = 557
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 557
0 150 300 450
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 22/58 (37%), Positives = 33/58 (56%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLYSR 395
++ VV H ML + GHY+ Y++ +G WYR DD + VE E + YML Y++
Sbjct: 477 IFAVVTHKGMLES---GHYVTYLR-LKGLWYRCDDAWINEVEEEVVRGCECYMLFYAQ 530
Score = 83 (29.2 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 18/69 (26%), Positives = 39/69 (56%), Frame = +1
Query: 4 LDGENMYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRI----AFPETL 171
L + C+ C + ++ K+++++ P +L + +KRF+ K +++I +P L
Sbjct: 376 LGPDQKLNCQSCGEKRESSKQMSIRRLPLLLCLHVKRFEHFLTRKTSRKIDSYLQYPFRL 435
Query: 172 NLSPYMSEA 198
N+SPY+S +
Sbjct: 436 NMSPYLSSS 444
>gi|7211980|gb|AAF40451.1|AC004809_9 (AC004809) Strong similarity to the
putative ubiquitin-specific protease F24L7.8 from A. thaliana
gi|2914695 on BAC gb|AC003974 and to ubiquitin carboxyl-terminal
hydrolase family PF|00442 and PF|00443. ESTs gb|Z17750 and
gb|Z17572 come from this gene.
>gi|11993463|gb|AAG42750.1|AF302659_1 (AF302659) ubiquitin-specific
protease 2 [Arabidopsis thaliana]
Length = 961
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | | | | | 961
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 24/56 (42%), Positives = 31/56 (55%), Frame = +1
Query: 55 AWKRLTVKCAPNILTIALKRFQS---GRFGKLNKRIAFPETLNLSPYMSEAGDGSD 213
A K++ + AP +LTI LKRF GR KLN +AF E ++L YM G D
Sbjct: 832 ATKKVLINKAPPVLTIHLKRFSQDLRGRLSKLNGHVAFKEVIDLRQYMDSRCSGED 887
Score = 77 (27.1 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 21/64 (32%), Positives = 31/64 (48%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQG---------NWYRIDDWKVMTVEVEELLSQGA 374
L G+V H + GHY+ Y++ Q WY + D V V +E++L A
Sbjct: 893 LAGLVEHSGTMRG---GHYVAYVRGGQRVKETDSSSTAWYNVSDAYVRQVSLEKVLHSEA 949
Query: 375 YMLLYSR 395
Y+L Y R
Sbjct: 950 YILFYER 956
Score = 43 (15.1 bits), Expect = 9.0, Sum P(2) = 1.0
Identities = 10/30 (33%), Positives = 15/30 (50%), Frame = +1
Query: 1 LLDGENMYKCEGCKDYVKAWKRLTVKCAPN 90
+L +N + CE C +K +RL K N
Sbjct: 723 ILSDDNAWNCENCSKNLKL-QRLREKRKSN 751
>gi|1174862|sp|Q09738|UBPA_SCHPO PUTATIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
C13A11.04C (UBIQUITIN THIOLESTERASE) (UBIQUITIN-SPECIFIC PROCESSING
PROTEASE) (DEUBIQUITINATING ENZYME) >gi|7493555|pir||T37611
ubiquitin carboxyl-terminal hydrolase - fission yeast
(Schizosaccharomyces pombe) >gi|984225|emb|CAA90805.1| (Z54096)
ubiquitin carboxyl-terminal hydrolase [Schizosaccharomyces pombe]
Length = 449
Frame 3 hits (HSPs): ______
Frame 1 hits (HSPs): __ _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 449
0 150 300
__________________
Annotated Domains:
BLOCKS BL00972A: Ubiquitin carboxyl-terminal hy 146..163
BLOCKS BL00972B: Ubiquitin carboxyl-terminal hy 229..238
BLOCKS BL00972C: Ubiquitin carboxyl-terminal hy 261..275
BLOCKS BL00972D: Ubiquitin carboxyl-terminal hy 378..402
BLOCKS BL00972E: Ubiquitin carboxyl-terminal hy 403..424
DOMO DM06903: 1..147
DOMO DM00659: UBIQUITINCARBOXYL-TERMINALHYDRO 149..388
Entrez active site: BY SIMILARITY. 154
Entrez active site: BY SIMILARITY. 387
Entrez active site: BY SIMILARITY. 395
PFAM UCH-1: Ubiquitin carboxyl-terminal hydro 145..176
PFAM UCH-2: Ubiquitin carboxyl-terminal hydro 375..434
PRODOM PD119505: UBPA_SCHPO 1..35
PRODOM PD038792: UBP8(1) UBPA(1) 37..98
PRODOM PD119506: UBPA_SCHPO 100..141
PRODOM PD000590: UBPD(3) UBPB(3) UBP4(3) 143..277
PRODOM PD017412: UBPB(3) UBPE(3) UBP4(3) 287..367
PRODOM PD000867: UBPE(4) UBPB(3) UBP4(3) 379..413
PRODOM PD163769: UBPA_SCHPO 415..448
PROSITE CYTOCHROME_C: Cytochrome c family heme-b 51..56
PROSITE UCH_2_1: Ubiquitin carboxyl-terminal hyd 146..161
PROSITE UCH_2_2: Ubiquitin carboxyl-terminal hyd 379..396
__________________
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 22/56 (39%), Positives = 32/56 (57%), Frame = +3
Query: 222 LYGVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMTVEVEELLSQGAYMLLY 389
LY VV H L+ GHYI Y +Q W+ +DD ++ V+ E+L+ AY+L Y
Sbjct: 381 LYSVVCHKGTLDT---GHYIAYTY-YQNQWFLLDDTTIVEVKESEVLNSQAYLLFY 432
Score = 70 (24.6 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 20/71 (28%), Positives = 34/71 (47%), Frame = +1
Query: 22 YKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFG---KLNKRIAFPETLNLSPYMS 192
Y C C A K+L P + + LKRF+ F K++K++++P L + +
Sbjct: 315 YSCHSCGSK-NAIKQLVFDKLPPTICMQLKRFEQNNFAMSTKIDKQVSYPAFLRMRYNFN 373
Query: 193 EAGDGSDIYSYMVL 234
+ D D Y V+
Sbjct: 374 Q--DDVDYQLYSVV 385
Score = 39 (13.7 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 6/8 (75%), Positives = 7/8 (87%), Frame = +1
Query: 28 CEGCKDYV 51
C GC+DYV
Sbjct: 87 CFGCQDYV 94
WARNING: HSPs involving 152 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.354 0.156 0.607
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.369 0.172 0.656
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.337 0.148 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.358 0.157 0.555
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.338 0.145 0.502
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.362 0.164 0.570
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 138 138 10. 73 3 12 22 0.12 33
30 0.10 36
+2 0 139 139 10. 73 3 12 22 0.12 33
30 0.10 36
+1 0 139 139 10. 73 3 12 22 0.12 33
30 0.10 36
-1 0 139 139 10. 73 3 12 22 0.12 33
30 0.10 36
-2 0 139 139 10. 73 3 12 22 0.12 33
30 0.10 36
-3 0 138 138 10. 73 3 12 22 0.12 33
30 0.10 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 202
No. of states in DFA: 598 (59 KB)
Total size of DFA: 186 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 143.31u 1.32s 144.63t Elapsed: 00:00:26
Total cpu time: 143.39u 1.34s 144.73t Elapsed: 00:00:26
Start: Wed Oct 3 12:16:54 2001 End: Wed Oct 3 12:17:20 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000