BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

RepeatMasker repeats found in sequence:

No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'D18E08_J20_10.ab1'
        (562 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 7 Sequences     : less than 7 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1757 387 |=======================================================
   6310 1370 243 |==================================
   3980 1127 238 |==================================
   2510  889 206 |=============================
   1580  683 137 |===================
   1000  546  86 |============
    631  460  92 |=============
    398  368  38 |=====
    251  330  29 |====
    158  301  21 |===
    100  280   9 |=
   63.1  271  10 |=
   39.8  261   7 |=
   25.1  254   5 |:
   15.8  249   7 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 242  <<<<<<<<<<<<<<<<<
   10.0  242   2 |:
   6.31  240   4 |:
   3.98  236   9 |=
   2.51  227   8 |=
   1.58  219   3 |:
   1.00  216   4 |:
   0.63  212   8 |=
   0.40  204   5 |:
   0.25  199   4 |:
   0.16  195   2 |:
   0.10  193   4 |:
  0.063  189   2 |:
  0.040  187   2 |:
  0.025  185   8 |=
  0.016  177   2 |:
  0.010  175   1 |:
 0.0063  174   5 |:
 0.0040  169   1 |:
 0.0025  168   0 |
 0.0016  168   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|7435895|pir||T04497multicatalytic endopeptidase co... +2   833  3.9e-82   1
gi|3024440|sp|P93395|PRCD_TOBACPROTEASOME DELTA CHAIN... +2   776  4.3e-76   1
gi|8671502|dbj|BAA96834.1|(AB026563) beta 1 subunit o... +2   760  2.1e-74   1
gi|7435894|pir||JE0101proteasome subunit 1 - slime mo... +2   451  1.2e-41   1
gi|2055301|dbj|BAA19761.1|(D87690) proteasome subunit... +2   425  6.8e-39   1
gi|285140|pir||JX0228multicatalytic endopeptidase com... +2   423  1.1e-38   1
gi|464446|sp|P28073|PRCD_RATPROTEASOME DELTA CHAIN PR... +2   423  1.1e-38   1
gi|745475|prf||2016287Ahousekeeping proteasome:SUBUNI... +2   423  1.1e-38   1
gi|984938|gb|AAA75375.1|(U13393) delta proteasome sub... +2   423  1.1e-38   1
gi|6679499ref|NP_032972.1| proteasome (prosome, macro... +2   423  1.1e-38   1
gi|7493189|pir||T40487proteasome component precursor ... +2   421  1.8e-38   1
gi|88166|pir||S17522multicatalytic endopeptidase comp... +2   417  4.8e-38   1
gi|296734|emb|CAA43963.1|(X61971) macropain subunit d... +2   417  4.8e-38   1
gi|12654059|gb|AAH00835.1|AAH00835(BC000835) Unknown ... +2   417  4.8e-38   1
gi|5823090|gb|AAD53036.1|AF115539_1(AF115539) proteas... +2   415  7.8e-38   1
gi|2055299|dbj|BAA19760.1|(D87689) proteasome subunit... +2   414  9.9e-38   1
gi|1172605|sp|P28072|PRCD_HUMANPROTEASOME DELTA CHAIN... +2   410  2.6e-37   1
gi|1362909|pir||B54589proteasome subunit Y - human       +2   410  2.6e-37   1
gi|6981426ref|NP_036840.1| low molecular mass polypep... +2   396  8.0e-36   1
gi|2055297|dbj|BAA19759.1|(D87687) LMP2 [Xenopus laevis] +2   388  5.6e-35   1
gi|2654062|gb|AAB87681.1|(AF032392) proteasome subuni... +2   388  5.6e-35   1
gi|130856|sp|P28076|PRC7_MOUSEPROTEASOME CHAIN 7 PREC... +2   387  7.2e-35   1
gi|2467365|dbj|BAA22584.1|(D44463) low molecular mass... +2   387  7.2e-35   1
gi|5823092|gb|AAD53037.1|AF115540_1(AF115540) low mol... +2   387  7.2e-35   1
gi|5833455|gb|AAD53516.1|AF155576_1(AF155576) proteas... +2   387  7.2e-35   1
gi|4506205ref|NP_002791.1| proteasome (prosome, macro... +2   386  9.2e-35   1
gi|1071888|pir||S27332proteasome chain LMP2 - human >... +2   386  9.2e-35   1
gi|2118154|pir||A55632proteasome LMP2.s - human >gi|3... +2   386  9.2e-35   1
gi|543275|pir||JC2019multicatalytic endopeptidase com... +2   386  9.2e-35   1
gi|8567394ref|NP_038613.1| proteosome (prosome, macro... +2   386  9.2e-35   1
gi|3811395|gb|AAC69911.1|(AF100956) LMP 2 [Mus musculus] +2   386  9.2e-35   1
gi|12732034ref|XP_004222.2| proteasome (prosome, macr... +2   386  9.2e-35   1
gi|2467357|dbj|BAA22580.1|(D44459) low molecular mass... +2   385  1.2e-34   1
gi|2467349|dbj|BAA22576.1|(D44455) low molecular mass... +2   383  1.9e-34   1
gi|2467351|dbj|BAA22577.1|(D44456) low molecular mass... +2   381  3.1e-34   1
gi|5833463|gb|AAD53520.1|AF155580_1(AF155580) proteas... +2   373  2.2e-33   1
gi|4741816|gb|AAD28715.1|AF112117_1(AF112117) low mol... +2   372  2.8e-33   1
gi|10803373|emb|CAC13120.1|(AJ271723) low molecular m... +2   370  4.6e-33   1
gi|476044|emb|CAA55591.1|(X78991) proteasomal subunit... +2   369  5.8e-33   1
gi|6322459ref|NP_012533.1| Subunit of 20S proteasome;... +2   369  5.8e-33   1
gi|3114276|pdb|1RYP|HChain H, Crystal Structure Of Th... +2   369  5.8e-33   1
gi|5823094|gb|AAD53038.1|AF115541_1(AF115541) low mol... +2   369  5.8e-33   1
gi|11513426|pdb|1G65|NChain N, Crystal Structure Of E... +2   369  5.8e-33   1
gi|12003001|gb|AAG43434.1|AF184932_1(AF184932) low mo... +2   366  1.2e-32   1
gi|10803372|emb|CAC13119.1|(AJ271723) low molecular m... +2   365  1.5e-32   1
gi|423366|pir||A4574420 S cytosolic proteasome subuni... +2   362  3.2e-32   1
gi|2055311|dbj|BAA19766.1|(D89724) LMP2 [Oryzias lati... +2   358  8.5e-32   1
gi|7303007|gb|AAF58077.1|(AE003808) CG8392 gene produ... +2   350  6.0e-31   1
gi|8117714|gb|AAF72737.1|AF097521_1(AF097521) proteas... +2   350  6.0e-31   1
gi|5833461|gb|AAD53519.1|AF155579_1(AF155579) proteas... +2   349  7.7e-31   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 192 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|7435895|pir||T04497  multicatalytic endopeptidase complex (EC 3.4.99.46)
            beta chain - Arabidopsis thaliana >gi|2511594|emb|CAA74028.1|
            (Y13694) multicatalytic endopeptidase complex, proteasome
            precursor, beta subunit [Arabidopsis thaliana]
            >gi|2827525|emb|CAA16533.1| (AL021633) multicatalytic endopeptidase
            complex, proteasome precursor, beta subunit [Arabidopsis thaliana]
            >gi|3421099|gb|AAC32065.1| (AF043529) 20S proteasome subunit PBA1
            [Arabidopsis thaliana] >gi|7270032|emb|CAB79848.1| (AL161578)
            multicatalytic endopeptidase complex, proteasome precursor, beta
            subunit [Arabidopsis thaliana]
            Length = 233

Frame  2 hits (HSPs):             ________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200

  Plus Strand HSPs:

 Score = 833 (293.2 bits), Expect = 3.9e-82, P = 3.9e-82
 Identities = 156/183 (85%), Positives = 171/183 (93%), Frame = +2

Query:    20 ITAGVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLET 199
             +T  VYVCRSGSAADSQ+VSDYVRYFLHQHTIQ GQPATVKV+ANL+R+L+YNNKN L+T
Sbjct:    49 LTDNVYVCRSGSAADSQVVSDYVRYFLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQT 108

Query:   200 GLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLV 379
             GLIVGGWDKYEGG+IYG+PLGGT+V+QPFAIGGSGSSYLYGFFDQAWK+ MTK+EAE LV
Sbjct:   109 GLIVGGWDKYEGGKIYGIPLGGTVVEQPFAIGGSGSSYLYGFFDQAWKDNMTKEEAEQLV 168

Query:   380 KKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEEMEPHNSLLDILGA--P 553
              KAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGD+L LWHEE+EP NSLLDIL A  P
Sbjct:   169 VKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDKLQLWHEELEPQNSLLDILNAAGP 228

Query:   554 EPM 562
             EPM
Sbjct:   229 EPM 231


 >gi|3024440|sp|P93395|PRCD_TOBAC  PROTEASOME DELTA CHAIN PRECURSOR
            (MULTICATALYTIC ENDOPEPTIDASE COMPLEX DELTA CHAIN)
            >gi|7435893|pir||T03985 multicatalytic endopeptidase complex (EC
            3.4.99.46) delta chain - common tobacco >gi|1743356|emb|CAA70699.1|
            (Y09505) proteasome delta subunit [Nicotiana tabacum]
            Length = 234

Frame  2 hits (HSPs):             _______________________________________ 
Annotated Domains:        ________________________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 234
                       0         50        100       150        200
__________________

Annotated Domains:
   PFAM                 proteasome: Proteasome A-type and B-type 15..157
   PRINTS               PROTEASOME1: Proteasome motif I - 4      21..36
   PRINTS               PROTEASOME2: Proteasome motif II - 4     142..153
   PRINTS               PROTEASOME3: Proteasome motif III - 4    153..164
   PRINTS               PROTEASOME4: Proteasome motif IV - 4     178..189
   PRODOM               PD003011: PRCD(3) PRC7(3)                17..49
   PRODOM               PD000280: PRC3(9) PRCB(8) PRC6(8)        52..203
   PRODOM               PD095413: PRCD_TOBAC                     205..233
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 17..64
__________________


  Plus Strand HSPs:

 Score = 776 (273.2 bits), Expect = 4.3e-76, P = 4.3e-76
 Identities = 145/181 (80%), Positives = 162/181 (89%), Frame = +2

Query:    20 ITAGVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLET 199
             +T  VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANL RLLSYNNK+ L+T
Sbjct:    50 LTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLTRLLSYNNKDRLQT 109

Query:   200 GLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLV 379
             G+I+GGWDKYEGG+IYG+P GGT+++QPFAIGGSGSSYLYGFFDQAWKEGMT++EAE LV
Sbjct:   110 GMIIGGWDKYEGGKIYGIPPGGTVLEQPFAIGGSGSSYLYGFFDQAWKEGMTQEEAEKLV 169

Query:   380 KKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEEMEPHNSLLDILGAPEP 559
               AVSLAIARDGASGGVVRTV IN +G TR FY GD L LWHEE+EP NSLLD++ A  P
Sbjct:   170 VTAVSLAIARDGASGGVVRTVTINKDGATRKFYSGDSLQLWHEELEPVNSLLDVVFASSP 229

Query:   560 M 562
             +
Sbjct:   230 V 230


 >gi|8671502|dbj|BAA96834.1|  (AB026563) beta 1 subunit of 20S proteasome [Oryza
            sativa]
            Length = 246

Frame  2 hits (HSPs):               ______________________________________
                        __________________________________________________
Database sequence:     |         |          |         |         |         | 246
                       0        50        100       150       200

  Plus Strand HSPs:

 Score = 760 (267.5 bits), Expect = 2.1e-74, P = 2.1e-74
 Identities = 140/183 (76%), Positives = 162/183 (88%), Frame = +2

Query:    20 ITAGVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLET 199
             +T  VY+CRSGSAAD+Q++SDYVRYFLHQHTIQLGQPATVKVAANL+RLL+Y NKN L+ 
Sbjct:    62 LTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQA 121

Query:   200 GLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLV 379
             G+IVGGWDKYEGGQI+ VPLGGTI++QPFAIGGSGSSYLYG  D  WKEGM+++EAE  V
Sbjct:   122 GMIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFV 181

Query:   380 KKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEEMEPHNSLLDILGA--P 553
              K VSLAIARDGASGGVVRTV IN++GV+R F+PGD+L LWHEE+EP NSLLDIL A  P
Sbjct:   182 VKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLQLWHEELEPQNSLLDILAAGNP 241

Query:   554 EPM 562
             +PM
Sbjct:   242 DPM 244


 >gi|7435894|pir||JE0101  proteasome subunit 1 - slime mold (Dictyostelium
            discoideum) >gi|3116216|dbj|BAA25923.1| (AB007024) proteasome
            subunit [Dictyostelium discoideum]
            Length = 213

Frame  2 hits (HSPs):               ______________________________________
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 213
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 451 (158.8 bits), Expect = 1.2e-41, P = 1.2e-41
 Identities = 85/157 (54%), Positives = 114/157 (72%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y CRSGSAAD+Q +SDYVRY+L  HT +L     VK AA L +LL Y+NKN L  G+IV
Sbjct:    55 IYCCRSGSAADTQAISDYVRYYLEMHTSELCDEPDVKTAACLFQLLCYSNKNNLMAGIIV 114

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK++G  +Y + LGG++V+QPFAIGGSGS+Y+YG+ D  +K  MTKD   + V+ ++
Sbjct:   115 AGWDKHQGS-VYNISLGGSMVKQPFAIGGSGSTYIYGYCDSKFKPKMTKDRCIEFVQNSL 173

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP-LW 502
             +LA+ RDG+SGGV+R  II+  GV R   PG+ LP  W
Sbjct:   174 ALAMFRDGSSGGVIRLCIIDKNGVERKMIPGNNLPRFW 211


 >gi|2055301|dbj|BAA19761.1|  (D87690) proteasome subunit Y [Lampetra japonica]
            Length = 231

Frame  2 hits (HSPs):                  ___________________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 231
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 425 (149.6 bits), Expect = 6.8e-39, P = 6.8e-39
 Identities = 79/160 (49%), Positives = 111/160 (69%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q ++D V Y L  H+I++ +   V  AANL +   Y  +  L  G+IV
Sbjct:    72 IFCCRSGSAADTQAIADVVNYQLGFHSIEMEEMPLVHTAANLFKDYCYRYREELMAGIIV 131

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK +GGQ+Y VPLGG +V+QPF++GGSGS+Y+YGF D  +K GMTK+E  +   KA+
Sbjct:   132 AGWDKRKGGQVYTVPLGGMLVRQPFSVGGSGSTYIYGFVDSNYKTGMTKEECMEFTAKAL 191

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             SLA++RDG+SGGV+R   I + GV R    G  +P ++EE
Sbjct:   192 SLAMSRDGSSGGVIRMAAITAGGVERRVLTGKDIPTFYEE 231


 >gi|285140|pir||JX0228  multicatalytic endopeptidase complex (EC 3.4.99.46)
            delta chain - rat >gi|286248|dbj|BAA01586.1| (D10754) proteasome
            subunit R-DELTA [Rattus sp.]
            Length = 202

Frame  2 hits (HSPs):            _______________________________________  
Annotated Domains:      ____________                                      
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200
__________________

Annotated Domains:
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 1..48
__________________


  Plus Strand HSPs:

 Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 79/155 (50%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    38 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 97

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ+Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTKDE       A+
Sbjct:    98 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANAL 157

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   158 ALAMERDGSSGGVIRLAAIQQSGVERQVLLGDQIP 192


 >gi|464446|sp|P28073|PRCD_RAT  PROTEASOME DELTA CHAIN PRECURSOR (MACROPAIN DELTA
            CHAIN) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX DELTA CHAIN)
            (PROTEASOME SUBUNIT Y) (PROTEASOME CHAIN 5)
            Length = 237

Frame  2 hits (HSPs):                  _________________________________  
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 237
                       0         50       100        150       200

  Plus Strand HSPs:

 Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 79/155 (50%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    73 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 132

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ+Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTKDE       A+
Sbjct:   133 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANAL 192

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   193 ALAMERDGSSGGVIRLAAIQQSGVERQVLLGDQIP 227


 >gi|745475|prf||2016287A  housekeeping proteasome:SUBUNIT=2 [Mus musculus]
            Length = 238

Frame  2 hits (HSPs):                  _________________________________  
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 238
                       0         50       100        150       200

  Plus Strand HSPs:

 Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 79/155 (50%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    74 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 133

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ+Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTKDE       A+
Sbjct:   134 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANAL 193

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   194 ALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIP 228


 >gi|984938|gb|AAA75375.1|  (U13393) delta proteasome subunit [Mus musculus]
            Length = 202

Frame  2 hits (HSPs):            _______________________________________  
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200

  Plus Strand HSPs:

 Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 79/155 (50%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    38 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 97

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ+Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTKDE       A+
Sbjct:    98 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANAL 157

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   158 ALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIP 192


 >gi|6679499  ref|NP_032972.1| proteasome (prosome, macropain) subunit, beta type
            6; subunit 2 [Mus musculus] >gi|2118156|pir||I49121 multicatalytic
            endopeptidase complex (EC 3.4.99.46) delta chain - mouse
            >gi|984940|gb|AAA75376.1| (U13394) delta proteasome subunit [Mus
            musculus]
            Length = 202

Frame  2 hits (HSPs):            _______________________________________  
                        __________________________________________________
Database sequence:     |            |           |           |            || 202
                       0           50         100         150          200

  Plus Strand HSPs:

 Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
 Identities = 79/155 (50%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    38 IFCCRSGSAADTQAVTDAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 97

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ+Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTKDE       A+
Sbjct:    98 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKDECLQFTANAL 157

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   158 ALAMERDGSSGGVIRLAAIQESGVERQVLLGDQIP 192


 >gi|7493189|pir||T40487  proteasome component precursor - fission yeast
            (Schizosaccharomyces pombe) >gi|2832891|emb|CAA16832.1| (AL021730)
            proteasome component precursor [Schizosaccharomyces pombe]
            Length = 226

Frame  2 hits (HSPs):                ___________________________________  
                        __________________________________________________
Database sequence:     |          |          |          |           |     | 226
                       0         50        100        150         200

  Plus Strand HSPs:

 Score = 421 (148.2 bits), Expect = 1.8e-38, P = 1.8e-38
 Identities = 76/156 (48%), Positives = 111/156 (71%), Frame = +2

Query:    20 ITAGVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLET 199
             +T  ++ CRSGSAAD+Q V+D ++Y+L  + IQ G   +V  AA L   + Y NKN L  
Sbjct:    61 LTDNIWCCRSGSAADTQTVADLLKYYLSMYRIQFGHDPSVHTAATLASEMCYQNKNMLSA 120

Query:   200 GLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLV 379
             GLIV G+D+  GG +Y +PLGG++ +QP AIGGSGS+++YGF D  ++E MT++EA + +
Sbjct:   121 GLIVAGYDEKTGGDVYSIPLGGSLHKQPLAIGGSGSAFIYGFCDANFRENMTQEEAVEFL 180

Query:   380 KKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGD 487
             K AV+LA+ RDG+SGG +R VI+N +G+ R F+  D
Sbjct:   181 KNAVALAMERDGSSGGTIRMVILNKDGMERKFFAID 216


 >gi|88166|pir||S17522  multicatalytic endopeptidase complex (EC 3.4.99.46) delta
            chain - human (fragment)
            Length = 205

Frame  2 hits (HSPs):            _______________________________________  
Annotated Domains:      _____________                                     
                        __________________________________________________
Database sequence:     |           |            |           |           | | 205
                       0          50          100         150         200
__________________

Annotated Domains:
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 4..51
__________________


  Plus Strand HSPs:

 Score = 417 (146.8 bits), Expect = 4.8e-38, P = 4.8e-38
 Identities = 78/155 (50%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    41 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 100

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ+Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTK+E       A+
Sbjct:   101 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 160

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   161 ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIP 195


 >gi|296734|emb|CAA43963.1|  (X61971) macropain subunit delta [Homo sapiens]
            Length = 180

Frame  2 hits (HSPs):       ___________________________________________   
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150

  Plus Strand HSPs:

 Score = 417 (146.8 bits), Expect = 4.8e-38, P = 4.8e-38
 Identities = 78/155 (50%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    16 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 75

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ+Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTK+E       A+
Sbjct:    76 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 135

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   136 ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIP 170


 >gi|12654059|gb|AAH00835.1|AAH00835  (BC000835) Unknown (protein for MGC:5169)
            [Homo sapiens]
            Length = 239

Frame  2 hits (HSPs):                  _________________________________  
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 239
                       0         50       100        150       200

  Plus Strand HSPs:

 Score = 417 (146.8 bits), Expect = 4.8e-38, P = 4.8e-38
 Identities = 78/155 (50%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    75 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 134

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ+Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTK+E       A+
Sbjct:   135 AGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 194

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   195 ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIP 229


 >gi|5823090|gb|AAD53036.1|AF115539_1  (AF115539) proteasome delta [Oncorhynchus
            mykiss]
            Length = 223

Frame  2 hits (HSPs):                 ____________________________________
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 223
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 415 (146.1 bits), Expect = 7.8e-38, P = 7.8e-38
 Identities = 79/157 (50%), Positives = 107/157 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q ++D V Y L  H+I+L +   V+ AANL +   Y  +  L  G+IV
Sbjct:    64 IFCCRSGSAADTQAIADVVTYQLGFHSIELDEAPLVQTAANLFKASCYRYREELMAGIIV 123

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK  GGQ+Y VP+GG +V+QP ++GGSGS+Y+YG+ D  +K  MTKD+   LV  A+
Sbjct:   124 AGWDKRRGGQVYTVPVGGMLVRQPVSVGGSGSTYIYGYMDSNYKPNMTKDQCLRLVSGAL 183

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLW 502
             SLA+ RDG+SGGVVR   I+  GV R    G+QLP W
Sbjct:   184 SLAMERDGSSGGVVRLAAISETGVDRQVILGNQLPKW 220


 >gi|2055299|dbj|BAA19760.1|  (D87689) proteasome subunit Y [Xenopus laevis]
            Length = 230

Frame  2 hits (HSPs):                  __________________________________ 
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 230
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 414 (145.7 bits), Expect = 9.9e-38, P = 9.9e-38
 Identities = 79/155 (50%), Positives = 105/155 (67%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q ++D V Y L  H+I+L  P  V  AANL + + Y  +  L  G+IV
Sbjct:    71 IFCCRSGSAADTQAIADAVTYQLGFHSIELDGPPLVHTAANLFKEMCYRYREDLMAGIIV 130

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK +GGQ+Y VP+GG +V Q F+IGGSGSSY+YGF D  ++ GMTK+E       A+
Sbjct:   131 AGWDKRKGGQVYTVPMGGMLVHQQFSIGGSGSSYIYGFVDSTYRPGMTKEECLKFTANAL 190

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I  EGV R    G+QLP
Sbjct:   191 ALAMERDGSSGGVIRLAAITEEGVERQVILGNQLP 225


 >gi|1172605|sp|P28072|PRCD_HUMAN  PROTEASOME DELTA CHAIN PRECURSOR (MACROPAIN
            DELTA CHAIN) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX DELTA CHAIN)
            (PROTEASOME SUBUNIT Y) >gi|558528|dbj|BAA06098.1| (D29012)
            proteasome subunit Y [Homo sapiens]
            Length = 239

Frame  2 hits (HSPs):                  _________________________________  
Annotated Domains:      _______________________________________________   
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 239
                       0         50       100        150       200
__________________

Annotated Domains:
   BLOCKS               BL00854A: Proteasome B-type subunits pro 39..84
   BLOCKS               BL00854B: Proteasome B-type subunits pro 120..127
   BLOCKS               BL00854C: Proteasome B-type subunits pro 146..174
   BLOCKS               BL00854D: Proteasome B-type subunits pro 197..206
   DOMO                 DM00618: PROTEASOMEB-TYPESUBUNITS        5..222
   PFAM                 proteasome: Proteasome A-type and B-type 36..178
   PRINTS               PROTEASOME1: Proteasome motif I - 4      42..57
   PRINTS               PROTEASOME2: Proteasome motif II - 4     163..174
   PRINTS               PROTEASOME3: Proteasome motif III - 4    174..185
   PRINTS               PROTEASOME4: Proteasome motif IV - 4     199..210
   PRODOM               PD095433: PRCD_HUMAN                     1..36
   PRODOM               PD003011: PRCD(3) PRC7(3)                38..70
   PRODOM               PD000280: PRC3(9) PRCB(8) PRC6(8)        72..222
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 38..85
__________________


  Plus Strand HSPs:

 Score = 410 (144.3 bits), Expect = 2.6e-37, P = 2.6e-37
 Identities = 78/155 (50%), Positives = 105/155 (67%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    75 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 134

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTK+E       A+
Sbjct:   135 AGWDPQEGGQGYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 194

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   195 ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIP 229


 >gi|1362909|pir||B54589  proteasome subunit Y - human
            Length = 239

Frame  2 hits (HSPs):                  _________________________________  
Annotated Domains:             ___________                                
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 239
                       0         50       100        150       200
__________________

Annotated Domains:
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 38..85
__________________


  Plus Strand HSPs:

 Score = 410 (144.3 bits), Expect = 2.6e-37, P = 2.6e-37
 Identities = 78/155 (50%), Positives = 105/155 (67%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q V+D V Y L  H+I+L +P  V  AA+L + + Y  +  L  G+I+
Sbjct:    75 IFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIII 134

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  EGGQ Y VP+GG +V+Q FAIGGSGSSY+YG+ D  ++EGMTK+E       A+
Sbjct:   135 AGWDPQEGGQGYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANAL 194

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +LA+ RDG+SGGV+R   I   GV R    GDQ+P
Sbjct:   195 ALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIP 229


 >gi|6981426  ref|NP_036840.1| low molecular mass polypeptide 2 [Rattus
            norvegicus] >gi|464445|sp|P28077|PRC7_RAT PROTEASOME CHAIN 7
            PRECURSOR (MACROPAIN CHAIN 7) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX
            CHAIN 7) (RING12 PROTEIN) >gi|285142|pir||JX0231 proteasome ring12
            chain - rat >gi|286252|dbj|BAA01589.1| (D10757) proteasome subunit
            R-RING12 [Rattus sp.]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 396 (139.4 bits), Expect = 8.0e-36, P = 8.0e-36
 Identities = 74/160 (46%), Positives = 109/160 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   L+V
Sbjct:    61 IYCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANIVKNISYKYREDLLAHLMV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD++EGGQ+YG  +GG +++QPFAIGGSGS+Y+YG+ D A+K GMT +E       A+
Sbjct:   121 AGWDQHEGGQVYGT-MGGMLIRQPFAIGGSGSTYIYGYVDAAYKPGMTPEECRRFTTDAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I ++GV      GD+LP +++E
Sbjct:   180 TLAMNRDGSSGGVIYLVTITADGVDHRVILGDELPKFYDE 219


 >gi|2055297|dbj|BAA19759.1|  (D87687) LMP2 [Xenopus laevis]
            Length = 215

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 388 (136.6 bits), Expect = 5.6e-35, P = 5.6e-35
 Identities = 73/158 (46%), Positives = 104/158 (65%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q V+D   Y +  H+I++  P  V  AANL++ +SY  K  +   LIV
Sbjct:    57 IYCALSGSAADAQAVADMAHYHMEVHSIEMEAPPLVLAAANLIKGISYKYKEEIMAHLIV 116

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+  GGQ+YG  LGG I++QPF IGGSGS+Y+YGF D  +K GM+++E E    +A+
Sbjct:   117 AGWDRKHGGQVYGT-LGGMIIRQPFTIGGSGSTYIYGFVDSKFKPGMSREECERFAVQAL 175

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWH 505
             SLA+ RDG+SGGV+  V +  EG   +   GD +P ++
Sbjct:   176 SLAMERDGSSGGVIYLVTVTKEGTKDSIISGDSIPRFY 213


 >gi|2654062|gb|AAB87681.1|  (AF032392) proteasome subunit Y [Danio rerio]
            Length = 223

Frame  2 hits (HSPs):                 ___________________________________ 
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 223
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 388 (136.6 bits), Expect = 5.6e-35, P = 5.6e-35
 Identities = 72/155 (46%), Positives = 106/155 (68%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q ++D V Y L  H+I+L +   V+ AA+L R + Y  +  L  G+IV
Sbjct:    64 IFCCRSGSAADTQAIADAVTYQLGFHSIELDEAPLVQTAASLFRDMCYRYREELMAGIIV 123

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+  GGQ+Y VP+GG + +QP ++GGSGSSY+YG+ D  ++ GM+K+E       A+
Sbjct:   124 AGWDRRRGGQVYTVPVGGMLTRQPVSVGGSGSSYIYGYVDSNYRSGMSKEECLKFTAGAL 183

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +L + RDG+SGGVVR  +I+ +GV R    G+QLP
Sbjct:   184 TLPMERDGSSGGVVRLAVISEQGVERQAILGNQLP 218


 >gi|130856|sp|P28076|PRC7_MOUSE  PROTEASOME CHAIN 7 PRECURSOR (MACROPAIN CHAIN
            7) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX CHAIN 7) (RING12 PROTEIN)
            >gi|237568|gb|AAB20105.1| (S59862) low molecular mass polypeptide
            complex subunit 2,  LMP-2=rat proteasome homolog [mice, Peptide,
            219 aa] [Mus sp.] >gi|984349|gb|AAA75304.1| (U22447) 20S proteasome
            subunit Lmp2 [Mus musculus] >gi|984351|gb|AAA75305.1| (U22448) 20S
            proteasome subunit Lmp2 [Mus musculus] >gi|1209537|gb|AAA98932.1|
            (U35323) low molecular weight protein 2 Lmp2 [Mus musculus]
            >gi|2467355|dbj|BAA22579.1| (D44458) low molecular mass polypeptide
            complex subunit 2 [Mus musculus] >gi|2467359|dbj|BAA22581.1|
            (D44460) low molecular mass polypeptide complex subunit 2 [Mus
            spretus] >gi|2467363|dbj|BAA22583.1| (D44462) low molecular mass
            polypeptide complex subunit 2 [Mus spretus]
            >gi|228222|prf||1718343A LMP-2 gene [Mus musculus]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200
__________________

Annotated Domains:
   BLOCKS               BL00854A: Proteasome B-type subunits pro 25..70
   BLOCKS               BL00854B: Proteasome B-type subunits pro 106..113
   BLOCKS               BL00854C: Proteasome B-type subunits pro 131..159
   BLOCKS               BL00854D: Proteasome B-type subunits pro 182..191
   PFAM                 proteasome: Proteasome A-type and B-type 22..163
   PRINTS               PROTEASOME1: Proteasome motif I - 4      28..43
   PRINTS               PROTEASOME2: Proteasome motif II - 4     148..159
   PRINTS               PROTEASOME3: Proteasome motif III - 4    159..170
   PRINTS               PROTEASOME4: Proteasome motif IV - 4     184..195
   PRODOM               PD009549:                                1..22
   PRODOM               PD003011: PRCD(3) PRC7(3)                24..56
   PRODOM               PD000280: PRC3(9) PRCB(8) PRC6(8)        81..207
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 24..71
__________________


  Plus Strand HSPs:

 Score = 387 (136.2 bits), Expect = 7.2e-35, P = 7.2e-35
 Identities = 74/160 (46%), Positives = 106/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  +GG +++QPF IGGSGSSY+YG+ D A+K GMT +E       A+
Sbjct:   121 AGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I + GV      GD+LP +++E
Sbjct:   180 TLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219


 >gi|2467365|dbj|BAA22584.1|  (D44463) low molecular mass polypeptide complex
            subunit 2 [Mus spicilegus]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 387 (136.2 bits), Expect = 7.2e-35, P = 7.2e-35
 Identities = 74/160 (46%), Positives = 106/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  +GG +++QPF IGGSGSSY+YG+ D A+K GMT +E       A+
Sbjct:   121 AGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I + GV      GD+LP +++E
Sbjct:   180 TLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPRFYDE 219


 >gi|5823092|gb|AAD53037.1|AF115540_1  (AF115540) low molecular mass protein 2
            [Oncorhynchus mykiss]
            Length = 217

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 217
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 387 (136.2 bits), Expect = 7.2e-35, P = 7.2e-35
 Identities = 71/160 (44%), Positives = 104/160 (65%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ C +GS AD+Q V+   ++ +  H+IQ+  P  VK AA++++ L YNNK  L+ G I 
Sbjct:    58 IFCCIAGSLADAQAVTKAAKFQISFHSIQMESPPLVKAAASVLKELCYNNKEELQAGFIT 117

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ +G Q+Y V LGG ++ QPF IGGSGS+Y+YG+ D  +K  M+K+E       A+
Sbjct:   118 AGWDRKKGPQVYTVALGGMLLSQPFTIGGSGSTYIYGYADAKYKPDMSKEECLQFATNAL 177

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RD  SGGV   V+I  EGV     PGD+LP +H+E
Sbjct:   178 ALAMGRDNVSGGVAHLVVITEEGVEHIVIPGDKLPKFHDE 217


 >gi|5833455|gb|AAD53516.1|AF155576_1  (AF155576) proteasome subunit beta 11
            [Danio rerio]
            Length = 217

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 217
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 387 (136.2 bits), Expect = 7.2e-35, P = 7.2e-35
 Identities = 74/160 (46%), Positives = 103/160 (64%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ C +GS AD+Q V+   ++ L  H+IQ+  P  VK AA+++R L Y+NK  L  G I 
Sbjct:    58 IFCCIAGSLADAQAVTKMAKFQLSFHSIQMESPPLVKAAASIMRELCYSNKEELRAGFIT 117

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ +G QIY V LGG ++ QPF IGGSGS+Y+YG+ D  +K  MT +EA      A+
Sbjct:   118 AGWDRKKGPQIYVVSLGGMLLSQPFTIGGSGSTYIYGYVDAKFKPDMTLEEATQFSTNAL 177

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RD  SGGVV  V+I   GV     PGD+LP +H+E
Sbjct:   178 ALAMGRDNVSGGVVHLVVITEAGVKHIVVPGDELPKFHDE 217


 >gi|4506205  ref|NP_002791.1| proteasome (prosome, macropain) subunit, beta
            type, 9 (large multifunctional protease 2); Proteasome subunit,
            beta type, 9 [Homo sapiens] >gi|417529|sp|P28065|PRC7_HUMAN
            PROTEASOME CHAIN 7 PRECURSOR (MACROPAIN CHAIN 7) (MULTICATALYTIC
            ENDOPEPTIDASE COMPLEX CHAIN 7) (RING12 PROTEIN)
            >gi|34635|emb|CAA47024.1| (X66401) proteasome related [Homo
            sapiens] >gi|34656|emb|CAA78700.1| (Z14977) MHC-encoded proteasome
            subunit gene [Homo sapiens] >gi|1054744|emb|CAA60784.1| (X87344)
            LMP2 [Homo sapiens]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 386 (135.9 bits), Expect = 9.2e-35, P = 9.2e-35
 Identities = 75/160 (46%), Positives = 107/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   L+V
Sbjct:    61 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  LGG + +QPFAIGGSGS+++YG+ D A+K GM+ +E       A+
Sbjct:   121 AGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA++RDG+SGGV+  V I + GV      G++LP +++E
Sbjct:   180 ALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219


 >gi|1071888|pir||S27332  proteasome chain LMP2 - human >gi|36059|emb|CAA44603.1|
            (X62741) interferon-inducible.  Proteasome-related gene. Proteasome
            generates  peptides, enabling antigen presentation. [Homo sapiens]
            >gi|228223|prf||1718344A RING12 gene [Homo sapiens]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
Annotated Domains:           ___________                                  
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200
__________________

Annotated Domains:
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 24..71
__________________


  Plus Strand HSPs:

 Score = 386 (135.9 bits), Expect = 9.2e-35, P = 9.2e-35
 Identities = 75/160 (46%), Positives = 107/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   L+V
Sbjct:    61 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  LGG + +QPFAIGGSGS+++YG+ D A+K GM+ +E       A+
Sbjct:   121 AGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA++RDG+SGGV+  V I + GV      G++LP +++E
Sbjct:   180 ALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 219


 >gi|2118154|pir||A55632  proteasome LMP2.s - human >gi|392959|gb|AAC50154.1|
            (U01025) LMP-2 [Homo sapiens] >gi|896224|gb|AAC60646.1| (S75169)
            proteasome LMP2.s=class II MHC encoded {alternatively spliced}
            [human, EBV-transformed B lymphoblastoid typing cell lines,
            Peptide, 209 aa] [Homo sapiens]
            Length = 209

Frame  2 hits (HSPs):              _______________________________________
Annotated Domains:         ____________                                   
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 209
                       0          50         100         150         200
__________________

Annotated Domains:
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 14..61
__________________


  Plus Strand HSPs:

 Score = 386 (135.9 bits), Expect = 9.2e-35, P = 9.2e-35
 Identities = 75/160 (46%), Positives = 107/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   L+V
Sbjct:    51 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV 110

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  LGG + +QPFAIGGSGS+++YG+ D A+K GM+ +E       A+
Sbjct:   111 AGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 169

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA++RDG+SGGV+  V I + GV      G++LP +++E
Sbjct:   170 ALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 209


 >gi|543275|pir||JC2019  multicatalytic endopeptidase complex (EC 3.4.99.46)
            chain Lmp-2 - mouse >gi|2118155|pir||A47294 gene Lmp-2 protein -
            mouse >gi|509035|dbj|BAA40680.1| (D14566) LMP-2 polypeptide [Mus
            musculus] >gi|984355|gb|AAA75307.1| (U22920) 20S proteasome subunit
            Lmp2 [Mus musculus] >gi|2467347|dbj|BAA22575.1| (D44454) low
            molecular mass polypeptide complex subunit 2 [Mus musculus
            castaneus] >gi|2467353|dbj|BAA22578.1| (D44457) low molecular mass
            polypeptide complex subunit 2 [Mus musculus molossinus]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
Annotated Domains:           ___________                                  
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200
__________________

Annotated Domains:
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 24..71
__________________


  Plus Strand HSPs:

 Score = 386 (135.9 bits), Expect = 9.2e-35, P = 9.2e-35
 Identities = 74/160 (46%), Positives = 106/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  +GG +++QPF IGGSGSSY+YG+ D A+K GMT +E       A+
Sbjct:   121 AGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I + GV      GD+LP +++E
Sbjct:   180 TLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219


 >gi|8567394  ref|NP_038613.1| proteosome (prosome, macropain) subunit, beta type
            9 (large multifunctional protease 2); large multifunctional
            protease 2 [Mus musculus] >gi|984353|gb|AAA75306.1| (U22919) 20S
            proteasome subunit Lmp2 [Mus musculus] >gi|2073368|dbj|BAA19855.1|
            (D43620) Lmp2 [Mus musculus] >gi|2467361|dbj|BAA22582.1| (D44461)
            low molecular mass polypeptide complex subunit 2 [Mus musculus
            molossinus] >gi|2555189|gb|AAB81528.1| (AF027865) 20S proteasome
            subunit lmp2 [Mus musculus]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 386 (135.9 bits), Expect = 9.2e-35, P = 9.2e-35
 Identities = 74/160 (46%), Positives = 106/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  +GG +++QPF IGGSGSSY+YG+ D A+K GMT +E       A+
Sbjct:   121 AGWDQCEGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I + GV      GD+LP +++E
Sbjct:   180 TLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219


 >gi|3811395|gb|AAC69911.1|  (AF100956) LMP 2 [Mus musculus]
            Length = 199

Frame  2 hits (HSPs):             ________________________________________
                        __________________________________________________
Database sequence:     |            |           |            |            | 199
                       0           50         100          150

  Plus Strand HSPs:

 Score = 386 (135.9 bits), Expect = 9.2e-35, P = 9.2e-35
 Identities = 74/160 (46%), Positives = 106/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    41 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 100

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  +GG +++QPF IGGSGSSY+YG+ D A+K GMT +E       A+
Sbjct:   101 AGWDQCEGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTDAI 159

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I + GV      GD+LP +++E
Sbjct:   160 TLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 199


 >gi|12732034  ref|XP_004222.2| proteasome (prosome, macropain) subunit, beta
            type, 9 (large multifunctional protease 2) [Homo sapiens]
            Length = 234

Frame  2 hits (HSPs):                   __________________________________
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 234
                       0         50        100       150        200

  Plus Strand HSPs:

 Score = 386 (135.9 bits), Expect = 9.2e-35, P = 9.2e-35
 Identities = 75/160 (46%), Positives = 107/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q V+D   Y L  H I+L +P  V  AAN+VR +SY  +  L   L+V
Sbjct:    76 IYCALSGSAADAQAVADMAAYQLELHGIELEEPPLVLAAANVVRNISYKYREDLSAHLMV 135

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  LGG + +QPFAIGGSGS+++YG+ D A+K GM+ +E       A+
Sbjct:   136 AGWDQREGGQVYGT-LGGMLTRQPFAIGGSGSTFIYGYVDAAYKPGMSPEECRRFTTDAI 194

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA++RDG+SGGV+  V I + GV      G++LP +++E
Sbjct:   195 ALAMSRDGSSGGVIYLVTITAAGVDHRVILGNELPKFYDE 234


 >gi|2467357|dbj|BAA22580.1|  (D44459) low molecular mass polypeptide complex
            subunit 2 [Mus platythrix]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 385 (135.5 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 74/160 (46%), Positives = 105/160 (65%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  +GG +++QPF IGGSGSSY+YG+ D A+K GMT +E       A+
Sbjct:   121 AGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTSEECRRFTTNAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I   GV      GD+LP +++E
Sbjct:   180 TLAMNRDGSSGGVIYLVTITVAGVDHRVILGDELPKFYDE 219


 >gi|2467349|dbj|BAA22576.1|  (D44455) low molecular mass polypeptide complex
            subunit 2 [Mus dunni]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 383 (134.8 bits), Expect = 1.9e-34, P = 1.9e-34
 Identities = 74/160 (46%), Positives = 105/160 (65%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  +GG +++QPF IGGSGSSY+YG+ D A+K GMT +E       A+
Sbjct:   121 AGWDQREGGQVYGT-MGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I + GV      GD+LP ++ E
Sbjct:   180 TLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYGE 219


 >gi|2467351|dbj|BAA22577.1|  (D44456) low molecular mass polypeptide complex
            subunit 2 [Mus musculus bactrianus]
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 381 (134.1 bits), Expect = 3.1e-34, P = 3.1e-34
 Identities = 73/160 (45%), Positives = 105/160 (65%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+YG  +GG +++QPF I GSGSSY+YG+ D A+K GMT +E       A+
Sbjct:   121 AGWDQREGGQVYGT-MGGMLIRQPFTISGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAI 179

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV+  V I + GV      GD+LP +++E
Sbjct:   180 TLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219


 >gi|5833463|gb|AAD53520.1|AF155580_1  (AF155580) proteasome subunit beta 9B
            [Danio rerio]
            Length = 227

Frame  2 hits (HSPs):               ______________________________________
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 227
                       0         50        100        150        200

  Plus Strand HSPs:

 Score = 373 (131.3 bits), Expect = 2.2e-33, P = 2.2e-33
 Identities = 76/168 (45%), Positives = 109/168 (64%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q +++ V Y L  H+I++ +   V  AA LV+ +SY  K  L   LIV
Sbjct:    58 IYCALSGSAADAQTIAEIVNYQLDVHSIEVDEDPLVCSAATLVKNISYKYKEELSAHLIV 117

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ EGGQ+Y   L G + +QPFA+GGSGS Y+YGF D  ++ GMTK E ++ V  ++
Sbjct:   118 AGWDRREGGQVYAT-LSGLLTRQPFAVGGSGSFYIYGFVDAEYRAGMTKKECQEFVINSL 176

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE--MEPHNSL 532
             SLA+ RDG+SGGV   V I+SE V      G+QLP +++   +EP  ++
Sbjct:   177 SLAMGRDGSSGGVAYLVTIDSESVEEKCILGNQLPTFYDPDTVEPSKAV 225


 >gi|4741816|gb|AAD28715.1|AF112117_1  (AF112117) low molecular mass polypeptide
            complex subunit 2 [Oncorhynchus mykiss]
            Length = 217

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 217
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 372 (131.0 bits), Expect = 2.8e-33, P = 2.8e-33
 Identities = 72/160 (45%), Positives = 107/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAADSQ +++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   LIV
Sbjct:    59 IYCALSGSAADSQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIV 118

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK  GGQ+Y V L G + +QPFA+GGSGSSY+YGF D  +++ M+K++ +  V   +
Sbjct:   119 AGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTL 177

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             SLA++RDG+SGGV   V I+ +G       G++LP ++++
Sbjct:   178 SLAMSRDGSSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217


 >gi|10803373|emb|CAC13120.1|  (AJ271723) low molecular mass polypeptide subunit
            PSMB9 [Takifugu rubripes]
            Length = 216

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |           |   | 216
                       0          50        100         150         200

  Plus Strand HSPs:

 Score = 370 (130.2 bits), Expect = 4.6e-33, P = 4.6e-33
 Identities = 71/160 (44%), Positives = 105/160 (65%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q +++ V Y L  H++++G+   V+ AANLV+ +SY  K  L   LIV
Sbjct:    58 IYCALSGSAADAQTIAEIVNYQLDVHSVEIGEDPLVRSAANLVKNISYKYKEELMAHLIV 117

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK +GGQ++   L G + +QPFA+GGSGSSY+YGF D  +++GM+K+EA+  V   +
Sbjct:   118 AGWDKRKGGQVFAT-LNGLLTRQPFAVGGSGSSYVYGFVDAEYRKGMSKEEAQQFVVNTL 176

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             SLA+ RDG+SGGV   V I+          G+ LP + ++
Sbjct:   177 SLAMNRDGSSGGVAYIVTIDEHNAEEKVILGNDLPTFFDQ 216


 >gi|476044|emb|CAA55591.1|  (X78991) proteasomal subunit Pre3 [Saccharomyces
            cerevisiae] >gi|854572|emb|CAA60921.1| (X87611) proteasome
            component pre3 [Saccharomyces cerevisiae] >gi|741845|prf||2008180A
            peptidyl-Glu protease [Saccharomyces cerevisiae]
            Length = 193

Frame  2 hits (HSPs):            ________________________________________ 
                        __________________________________________________
Database sequence:     |            |            |            |           | 193
                       0           50          100          150

  Plus Strand HSPs:

 Score = 369 (129.9 bits), Expect = 5.8e-33, P = 5.8e-33
 Identities = 69/152 (45%), Positives = 109/152 (71%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q ++D V+Y L  +T Q G P+T + AA++ + L Y NK+ L  G+IV
Sbjct:    38 IWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIV 96

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              G+D    G++Y +PLGG++ + P+AI GSGS+++YG+ D+ ++E M+K+E  D +K ++
Sbjct:    97 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 156

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRN-FYPGD 487
             S AI  DG+SGGV+R V++ + GV R  FYP +
Sbjct:   157 SQAIKWDGSSGGVIRMVVLTAAGVERLIFYPDE 189


 >gi|6322459  ref|NP_012533.1| Subunit of 20S proteasome; Pre3p [Saccharomyces
            cerevisiae] >gi|1172606|sp|P38624|PRCD_YEAST PROTEASOME COMPONENT
            PRE3 PRECURSOR (MACROPAIN SUBUNIT PRE3) (PROTEINASE YSCE SUBUNIT
            PRE3) (MULTICATALYTIC ENDOPEPTIDASE COMPLEX SUBUNIT PRE3)
            >gi|2118153|pir||S61337 multicatalytic endopeptidase complex (EC
            3.4.99.46) chain PRE3 - yeast (Saccharomyces cerevisiae)
            >gi|2131077|emb|CAA89290.1| (Z49276) ORF YJL001w [Saccharomyces
            cerevisiae]
            Length = 215

Frame  2 hits (HSPs):                ____________________________________ 
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 215
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 369 (129.9 bits), Expect = 5.8e-33, P = 5.8e-33
 Identities = 69/152 (45%), Positives = 109/152 (71%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q ++D V+Y L  +T Q G P+T + AA++ + L Y NK+ L  G+IV
Sbjct:    60 IWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIV 118

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              G+D    G++Y +PLGG++ + P+AI GSGS+++YG+ D+ ++E M+K+E  D +K ++
Sbjct:   119 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 178

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRN-FYPGD 487
             S AI  DG+SGGV+R V++ + GV R  FYP +
Sbjct:   179 SQAIKWDGSSGGVIRMVVLTAAGVERLIFYPDE 211


 >gi|3114276|pdb|1RYP|H  Chain H, Crystal Structure Of The 20s Proteasome From
            Yeast At 2.4 Angstroms Resolution >gi|3114290|pdb|1RYP|V Chain V,
            Crystal Structure Of The 20s Proteasome From Yeast At 2.4 Angstroms
            Resolution
            Length = 205

Frame  2 hits (HSPs):              ______________________________________ 
                        __________________________________________________
Database sequence:     |           |            |           |           | | 205
                       0          50          100         150         200

  Plus Strand HSPs:

 Score = 369 (129.9 bits), Expect = 5.8e-33, P = 5.8e-33
 Identities = 69/152 (45%), Positives = 109/152 (71%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q ++D V+Y L  +T Q G P+T + AA++ + L Y NK+ L  G+IV
Sbjct:    50 IWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIV 108

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              G+D    G++Y +PLGG++ + P+AI GSGS+++YG+ D+ ++E M+K+E  D +K ++
Sbjct:   109 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 168

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRN-FYPGD 487
             S AI  DG+SGGV+R V++ + GV R  FYP +
Sbjct:   169 SQAIKWDGSSGGVIRMVVLTAAGVERLIFYPDE 201


 >gi|5823094|gb|AAD53038.1|AF115541_1  (AF115541) low molecular mass protein 2
            [Oncorhynchus mykiss]
            Length = 217

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 217
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 369 (129.9 bits), Expect = 5.8e-33, P = 5.8e-33
 Identities = 71/160 (44%), Positives = 107/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q +++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   LIV
Sbjct:    59 IYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEDLSAHLIV 118

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK  GGQ+Y V L G + +QPFA+GGSGSSY+YGF D  +++ M+K++ +  V   +
Sbjct:   119 AGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSSYVYGFVDAEYRKAMSKEDCQQFVVNTL 177

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             SLA++RDG+SGGV   V I+ +G       G++LP ++++
Sbjct:   178 SLAMSRDGSSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217


 >gi|11513426|pdb|1G65|N  Chain N, Crystal Structure Of Epoxomicin:20s Proteasome
            Reveals A Molecular Basis For Selectivity Of Alpha,Beta-Epoxyketone
            Proteasome Inhibitors >gi|11513440|pdb|1G65|2 Chain 2, Crystal
            Structure Of Epoxomicin:20s Proteasome Reveals A Molecular Basis
            For Selectivity Of Alpha,Beta-Epoxyketone Proteasome Inhibitors
            >gi|11514005|pdb|1G0U|N Chain N, A Gated Channel Into The
            Proteasome Core Particle >gi|11514019|pdb|1G0U|2 Chain 2, A Gated
            Channel Into The Proteasome Core Particle
            Length = 196

Frame  2 hits (HSPs):             _______________________________________ 
                        __________________________________________________
Database sequence:     |            |            |            |           | 196
                       0           50          100          150

  Plus Strand HSPs:

 Score = 369 (129.9 bits), Expect = 5.8e-33, P = 5.8e-33
 Identities = 69/152 (45%), Positives = 109/152 (71%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ CRSGSAAD+Q ++D V+Y L  +T Q G P+T + AA++ + L Y NK+ L  G+IV
Sbjct:    41 IWCCRSGSAADTQAIADIVQYHLELYTSQYGTPST-ETAASVFKELCYENKDNLTAGIIV 99

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              G+D    G++Y +PLGG++ + P+AI GSGS+++YG+ D+ ++E M+K+E  D +K ++
Sbjct:   100 AGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 159

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRN-FYPGD 487
             S AI  DG+SGGV+R V++ + GV R  FYP +
Sbjct:   160 SQAIKWDGSSGGVIRMVVLTAAGVERLIFYPDE 192


 >gi|12003001|gb|AAG43434.1|AF184932_1  (AF184932) low molecular mass protein 2
            [Salmo salar] >gi|12003003|gb|AAG43435.1|AF184933_1 (AF184933) low
            molecular mass protein 2 [Salmo salar]
            >gi|12003005|gb|AAG43436.1|AF184934_1 (AF184934) low molecular mass
            protein 2 [Salmo salar] >gi|12003007|gb|AAG43437.1|AF184935_1
            (AF184935) low molecular mass protein 2 [Salmo salar]
            >gi|12003009|gb|AAG43438.1|AF184936_1 (AF184936) low molecular mass
            protein 2 [Salmo salar]
            Length = 217

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 217
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 366 (128.8 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 70/160 (43%), Positives = 107/160 (66%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q +++ V Y L  H+I++G+   V+ AA LV+ +SY  K  L   LIV
Sbjct:    59 IYCALSGSAADAQTIAEMVNYQLDVHSIEVGEDPQVRSAATLVKNISYKYKEELSAHLIV 118

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK  GGQ+Y V L G + +QPFA+GGSGS+Y+YGF D  +++ M+K++ +  V   +
Sbjct:   119 AGWDKRGGGQVY-VTLNGLLSRQPFAVGGSGSAYVYGFVDAEYRKAMSKEDCQQFVVNTL 177

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             SLA++RDG+SGGV   V I+ +G       G++LP ++++
Sbjct:   178 SLAMSRDGSSGGVAYLVTIDEKGAEEKCILGNELPTFYDQ 217


 >gi|10803372|emb|CAC13119.1|  (AJ271723) low molecular mass polypeptide subunit
            PSMB9-L [Takifugu rubripes]
            Length = 217

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 217
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 365 (128.5 bits), Expect = 1.5e-32, P = 1.5e-32
 Identities = 68/160 (42%), Positives = 100/160 (62%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++ C +GS AD+Q V+   ++ L  H++Q+  P  V  AA++++ L Y NK  L+ G I 
Sbjct:    58 IFCCMAGSLADAQAVTKAAKFHLSFHSVQMETPPLVISAASVLKELCYQNKEELQAGFIT 117

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD  +G Q+Y V LGG +V+QP  IGGSGSSY+YG+ D  +K  M+++E       A+
Sbjct:   118 AGWDSRKGPQVYVVALGGMLVRQPVTIGGSGSSYIYGYVDAKYKPNMSREECLQFATNAL 177

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RD  SGGV   V+I   GV     PGD+LP +H+E
Sbjct:   178 ALAMGRDNVSGGVANLVVITETGVEHLVVPGDKLPRFHDE 217


 >gi|423366|pir||A45744  20 S cytosolic proteasome subunit - mouse
            Length = 219

Frame  2 hits (HSPs):                _____________________________________
Annotated Domains:           ___________                                  
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200
__________________

Annotated Domains:
   PROSITE              PROTEASOME_B: Proteasome B-type subunits 24..71
__________________


  Plus Strand HSPs:

 Score = 362 (127.4 bits), Expect = 3.2e-32, P = 3.2e-32
 Identities = 73/160 (45%), Positives = 105/160 (65%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             ++   SGSAAD+Q ++D   Y L  H ++L +P  V  AAN+V+ +SY  +  L   LIV
Sbjct:    61 IFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKYREDLLAHLIV 120

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQ-PFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKA 388
              GWD+ EGGQ+YG  +GG +++Q PF IGGSGSS +YG+ D A+K GMT +E       A
Sbjct:   121 AGWDQREGGQVYGT-MGGMLIRQWPFTIGGSGSS-IYGYVDAAYKPGMTPEECRRFTTNA 178

Query:   389 VSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             ++LA+ RDG+SGGV+  V I + GV      GD+LP +++E
Sbjct:   179 ITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFYDE 219


 >gi|2055311|dbj|BAA19766.1|  (D89724) LMP2 [Oryzias latipes]
            Length = 213

Frame  2 hits (HSPs):               ______________________________________
                        __________________________________________________
Database sequence:     |           |           |          |           |   | 213
                       0          50         100        150         200

  Plus Strand HSPs:

 Score = 358 (126.0 bits), Expect = 8.5e-32, P = 8.5e-32
 Identities = 69/160 (43%), Positives = 102/160 (63%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q +++ V Y L  H++++ +   V+ AA LV+ +SY  K  L   LIV
Sbjct:    55 IYCALSGSAADAQTIAEMVNYQLDVHSLEIDEDPQVRSAATLVKNISYKYKEELSAHLIV 114

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWD+ +GGQ++   LGG + +QPFAIGGSGSSY+YGF D  ++ GMTK+E +  V   +
Sbjct:   115 AGWDRRDGGQVFAT-LGGLLTRQPFAIGGSGSSYVYGFVDAEYRRGMTKEECQKFVVNTL 173

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV   V I+          G+ LP + ++
Sbjct:   174 ALAMNRDGSSGGVAYIVTIDEHSTDEKVILGNDLPTFFDQ 213


 >gi|7303007|gb|AAF58077.1|  (AE003808) CG8392 gene product [Drosophila
            melanogaster]
            Length = 224

Frame  2 hits (HSPs):              ___________________________________    
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 224
                       0         50         100        150        200

  Plus Strand HSPs:

 Score = 350 (123.2 bits), Expect = 6.0e-31, P = 6.0e-31
 Identities = 72/154 (46%), Positives = 97/154 (62%), Frame = +2

Query:    20 ITAGVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLET 199
             IT  VY CRSGSAAD+Q ++D V Y L+ H  Q  + A V  AA+  R   Y+ +  L  
Sbjct:    52 ITDKVYCCRSGSAADTQAIADIVAYSLNYHENQTNKDALVFEAASEFRNYCYSYRESLLA 111

Query:   200 GLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLV 379
             G+IV GWD+  GGQ+Y +PLGG + ++   IGGSGSS++YGF  + ++  M  ++    V
Sbjct:   112 GIIVAGWDEQRGGQVYSIPLGGMLTRESCTIGGSGSSFIYGFVREHYRPNMALEDCVTFV 171

Query:   380 KKAVSLAIARDGASGGVVRTVIINSEGVTRN-FY 478
             KKAV  AI  DG+SGGVVR  II  +G+ R  FY
Sbjct:   172 KKAVQHAIYHDGSSGGVVRIGIITKDGIERRIFY 205


 >gi|8117714|gb|AAF72737.1|AF097521_1  (AF097521) proteasome B type subunit
            [Cryptosporidium parvum]
            Length = 210

Frame  2 hits (HSPs):              _______________________________________
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 210
                       0          50         100         150         200

  Plus Strand HSPs:

 Score = 350 (123.2 bits), Expect = 6.0e-31, P = 6.0e-31
 Identities = 65/159 (40%), Positives = 98/159 (61%), Frame = +2

Query:    20 ITAGVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLET 199
             IT  V++CRSGSAAD+QI+S YVR  +  H ++ G+   VK  A++ RL+SY NK  L  
Sbjct:    50 ITDKVFMCRSGSAADTQIISRYVRRIVQDHELETGEDTKVKSVASVARLISYQNKEHLLA 109

Query:   200 GLIVGGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLV 379
              +I+ G D     +++ +PLGGT+++  +AI GSGS Y+Y   D  +   M  DE +   
Sbjct:   110 DMIIAGMDPNGEFKVFRIPLGGTLIEGSYAISGSGSGYIYSMLDSKYHSEMDLDECKSFA 169

Query:   380 KKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLP 496
             +  VS A+ RD +SGG++R ++IN  GV     PG+ +P
Sbjct:   170 RDLVSHAMFRDSSSGGIIRIIVINKSGVEEFVVPGEDVP 208


 >gi|5833461|gb|AAD53519.1|AF155579_1  (AF155579) proteasome subunit beta 9A
            [Danio rerio]
            Length = 218

Frame  2 hits (HSPs):                _____________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 218
                       0          50        100         150        200

  Plus Strand HSPs:

 Score = 349 (122.9 bits), Expect = 7.7e-31, P = 7.7e-31
 Identities = 72/160 (45%), Positives = 100/160 (62%), Frame = +2

Query:    32 VYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIV 211
             +Y   SGSAAD+Q +++ V Y L  H+I++     V  AA LV+ +SY  K  L   LIV
Sbjct:    60 IYCALSGSAADAQTIAEIVNYQLDVHSIEVEDDPLVCSAATLVKNISYKYKEELSAHLIV 119

Query:   212 GGWDKYEGGQIYGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMTKDEAEDLVKKAV 391
              GWDK  GGQ+Y   L G + +QPFAIGGSGS Y+ GF D  +K+ MTK E ++ V  A+
Sbjct:   120 AGWDKKGGGQVYAT-LSGLLTKQPFAIGGSGSFYINGFVDAEYKKNMTKRECQEFVVNAL 178

Query:   392 SLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEE 511
             +LA+ RDG+SGGV   V I+ +G       G++LP + +E
Sbjct:   179 TLAMGRDGSSGGVAYVVTIDKDGTEEKCVLGNELPKFFDE 218


WARNING:  HSPs involving 192 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.89

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.354   0.158   0.539  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.316   0.137   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.349   0.155   0.682  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.346   0.154   0.520  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.337   0.144   0.509  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.336   0.146   0.505  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      186       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +2      0      187       187       10.  76 3  12 22  0.093   35
                                                    31  0.12    37
   +1      0      187       187       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -1      0      187       187       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -2      0      187       187       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -3      0      186       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  242
  No. of states in DFA:  595 (59 KB)
  Total size of DFA:  236 KB (256 KB)
  Time to generate neighborhood:  0.03u 0.00s 0.03t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  441.08u 1.29s 442.37t  Elapsed: 00:01:24
  Total cpu time:  441.15u 1.35s 442.50t  Elapsed: 00:01:24
  Start:  Thu Jan 17 18:18:02 2002   End:  Thu Jan 17 18:19:26 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000