R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|5103825|gb|AAD39655.1|AC007591_20 (AC007591) ESTs gb|AA650895, gb|AA720043
and gb|R29777 come from this gene. [Arabidopsis thaliana]
>gi|12484215|gb|AAG54006.1|AF336925_1 (AF336925) unknown protein
[Arabidopsis thaliana]
Length = 64
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 290 (102.1 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 55/64 (85%), Positives = 62/64 (96%), Frame = +3
Query: 102 MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKK 281
MS+KQGGKAKPLK+PK+DKK+YDE D+ANIQKKK+EEKALKEL+AKA QKGSFGGSGLKK
Sbjct: 1 MSSKQGGKAKPLKQPKADKKEYDETDLANIQKKKDEEKALKELRAKASQKGSFGGSGLKK 60
Query: 282 SGKK 293
SGKK
Sbjct: 61 SGKK 64
>gi|9294450|dbj|BAB02669.1| (AB012247) gene_id:MSL1.7~unknown protein
[Arabidopsis thaliana]
Length = 62
Frame 3 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Plus Strand HSPs:
Score = 244 (85.9 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 48/59 (81%), Positives = 53/59 (89%), Frame = +3
Query: 117 GGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKKSGKK 293
GGK KPLK+PKS KK+YDE DM +QKKK+EEKALKEL+AKA QKGSFGGSGLKKSGKK
Sbjct: 4 GGKLKPLKQPKSGKKEYDEHDMELMQKKKDEEKALKELRAKASQKGSFGGSGLKKSGKK 62
>gi|7511888|pir||T13381 hypothetical protein 115C2.12 - fruit fly (Drosophila
melanogaster) >gi|4688661|emb|CAB41345.1| (AL031581)
/prediction=(method:""genefinder"", version:""084"",
score:""18.93"")~/prediction=(method:""genscan"", version:""1.0"",
score:""25.85"")~/match=(desc:""F49C12.11 PROTEIN"",
species:""CAENORHABDITIS ELEGANS"", ranges:(query:3059..3250,
target> >gi|7290062|gb|AAF45528.1| (AE003418) CG13364 gene product
[Drosophila melanogaster]
Length = 64
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 194 (68.3 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 39/64 (60%), Positives = 47/64 (73%), Frame = +3
Query: 102 MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKK 281
MS ++GGK KPLK PK D KD DE DMA QK+KE++KAL+ KA A +KG G G+KK
Sbjct: 1 MSGREGGKKKPLKAPKKDSKDLDEDDMAFKQKQKEQQKALEAAKANASKKGPLVGGGIKK 60
Query: 282 SGKK 293
SGKK
Sbjct: 61 SGKK 64
>gi|7705431 ref|NP_057017.1| hypothetical protein [Homo sapiens]
>gi|4679018|gb|AAD26997.1| (AF077202) HSPC016 [Homo sapiens]
>gi|12654537|gb|AAH01102.1|AAH01102 (BC001102) hypothetical protein
[Homo sapiens]
Length = 64
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 185 (65.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 38/64 (59%), Positives = 46/64 (71%), Frame = +3
Query: 102 MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKK 281
MS ++GGK KPLK+PK K+ DE D A QK+KEE+K L+ELKAKA KG G+KK
Sbjct: 1 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 60
Query: 282 SGKK 293
SGKK
Sbjct: 61 SGKK 64
>gi|12730068 ref|XP_003302.2| hypothetical protein [Homo sapiens]
Length = 76
Frame 3 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | 76
0 20 40 60
Plus Strand HSPs:
Score = 185 (65.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 38/64 (59%), Positives = 46/64 (71%), Frame = +3
Query: 102 MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKK 281
MS ++GGK KPLK+PK K+ DE D A QK+KEE+K L+ELKAKA KG G+KK
Sbjct: 13 MSGREGGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKK 72
Query: 282 SGKK 293
SGKK
Sbjct: 73 SGKK 76
>gi|7298038|gb|AAF53279.1| (AE003639) CG16824 gene product [Drosophila
melanogaster]
Length = 64
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 182 (64.1 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 36/64 (56%), Positives = 47/64 (73%), Frame = +3
Query: 102 MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKK 281
M+ ++GGK KPLK PK D K+ DE DMA QK+KE++KA++ KA A +KG G G+KK
Sbjct: 1 MAGREGGKKKPLKAPKKDSKNLDEEDMAFKQKQKEQQKAMEAAKAGASKKGPLLGGGIKK 60
Query: 282 SGKK 293
SGKK
Sbjct: 61 SGKK 64
>gi|6841310|gb|AAF29008.1|AF161448_1 (AF161448) HSPC330 [Homo sapiens]
Length = 59
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 59
0 20 40
Plus Strand HSPs:
Score = 174 (61.3 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 36/59 (61%), Positives = 42/59 (71%), Frame = +3
Query: 117 GGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKKSGKK 293
GGK KPLK+PK K+ DE D A QK+KEE+K L+ELKAKA KG G+KKSGKK
Sbjct: 1 GGKKKPLKQPKKQAKEMDEEDKAFKQKQKEEQKKLEELKAKAAGKGPLATGGIKKSGKK 59
>gi|7503800|pir||T22415 hypothetical protein F49C12.11 - Caenorhabditis elegans
>gi|3877368|emb|CAA92514.1| (Z68227) cDNA EST EMBL:T01259 comes
from this gene~cDNA EST yk67d3.3 comes from this gene~cDNA EST
yk67d3.5 comes from this gene~cDNA EST yk136h3.3 comes from this
gene~cDNA EST yk136h3.5 comes from this gene~cDNA EST yk482b3.3
comes from this gene~cDN>
Length = 64
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 169 (59.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 35/64 (54%), Positives = 45/64 (70%), Frame = +3
Query: 102 MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKK 281
MS +QGGKAKPLK K +KD E D+ +K++EE K +KE+ AKA Q+G G G+KK
Sbjct: 1 MSGRQGGKAKPLKAAKKTEKDLSEEDVEFKKKQQEEAKKIKEMAAKAGQRGPLLGGGIKK 60
Query: 282 SGKK 293
SGKK
Sbjct: 61 SGKK 64
>gi|6323292 ref|NP_013364.1| Ylr262c-ap [Saccharomyces cerevisiae]
>gi|2131800|pir||S72200 hypothetical protein YLR262c-a - yeast
(Saccharomyces cerevisiae)
Length = 64
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Plus Strand HSPs:
Score = 135 (47.5 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 29/64 (45%), Positives = 40/64 (62%), Frame = +3
Query: 102 MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEEKALKELKAKAQQKGSFGGSGLKK 281
MS++QGGK KPLK+ K ++D D D+A +K+K + A K L A + G G+KK
Sbjct: 1 MSSRQGGKMKPLKQKKKQQQDLDPEDIAFKEKQKADAAAKKALMANMKSGKPLVGGGIKK 60
Query: 282 SGKK 293
SGKK
Sbjct: 61 SGKK 64
>gi|4494004|emb|CAB39063.1| (AL034559) F49C12.11-like protein [Plasmodium
falciparum]
Length = 54
Frame 3 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | 54
0 20 40
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 0.094, P = 0.090
Identities = 22/49 (44%), Positives = 30/49 (61%), Frame = +3
Query: 114 QGGKAKPLKKPKSDKKDYDEVDMA----NIQKKKEEEKALKELKAKAQQK 251
QGGK KPLK K + E D+A +KKK EE+A ++L KA++K
Sbjct: 6 QGGKKKPLKAAKKGPVELTEEDIAFKKEMAEKKKAEEEAKQKL-LKAKKK 54
>gi|7486459|pir||T02461 hypothetical protein F4I18.16 - Arabidopsis thaliana
>gi|3386608|gb|AAC28538.1| (AC004665) hypothetical protein
[Arabidopsis thaliana]
Length = 79
Frame 3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 2.7, P = 0.94
Identities = 16/34 (47%), Positives = 23/34 (67%), Frame = +3
Query: 186 NIQKKKE-EEKALKELKAKAQQKGSFGGSGLKKSG 287
N+QK+KE ++K +K+L A + K GSG KK G
Sbjct: 17 NLQKEKELQDKKIKKLHAN-KNKMKVDGSGKKKKG 50
>gi|1042189|gb|AAB34942.1| T2=testis-specific pro-protamine [Loligo
pealeii=squids, testis chromatin, Peptide, 79 aa]
Length = 79
Frame 1 hits (HSPs): ______________________________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Plus Strand HSPs:
Score = 64 (22.5 bits), Expect = 3.7, P = 0.97
Identities = 26/64 (40%), Positives = 31/64 (48%), Frame = +1
Query: 118 VEKLSL*RNPSLIRRITTRLTWLTFRRKRKRRRR*RS*KP-RRNRREALEVLGSRKVERN 294
VEKL L + RR + R RR R+RRRR RS P RR RR R+ R
Sbjct: 12 VEKLDLLKGGRRRRRRSRR------RRSRRRRRRRRSRSPYRRRRRRRRRRSRRRRRYRR 65
Query: 295 KGSLS 309
+ S S
Sbjct: 66 RRSYS 70
>gi|10177250|dbj|BAB10718.1| (AB007644) gene_id:K19P17.4~unknown protein
[Arabidopsis thaliana]
Length = 66
Frame 3 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | 66
0 20 40 60
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 7.7, P = 1.0
Identities = 28/65 (43%), Positives = 33/65 (50%), Frame = +3
Query: 60 RFCFQTKP*LRIATMSTKQGG-KAKPLKKPKSDKKDYDEVDMANIQK--KKEEEKA-LKE 227
+F FQ M K G KA KPK +KK EV I+K KKEE+K KE
Sbjct: 2 KFLFQCPCCSCFCFMKPKPGKPKAVGDTKPKEEKKK--EVKKEEIKKEEKKEEKKEEKKE 59
Query: 228 LKA-KAQ 245
KA KA+
Sbjct: 60 TKAEKAE 66
>gi|3334471|sp|P46514|LE10_HELAN 10 KDA LATE EMBRYOGENESIS ABUNDANT PROTEIN
(DS10) >gi|2828229|emb|CAA42220.1| (X59699) 10 kDa Lea (Late
embryogenesis abundant) protein [Helianthus annuus]
>gi|3724199|emb|CAA11834.1| (AJ224116) lea group I [Helianthus
annuus]
Length = 92
Frame 3 hits (HSPs): ________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
__________________
Annotated Domains:
BLOCKS BL00431A: Small hydrophilic plant seed p 14..32
BLOCKS BL00431B: Small hydrophilic plant seed p 36..72
PFAM seed_protein: Small hydrophilic plant se 1..89
PRODOM PD002246: EM1(3) L194(2) 15..88
PROSITE SMALL_HYDR_PLANT_SEED: Small hydrophilic 27..35
__________________
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 8.2, P = 1.0
Identities = 24/74 (32%), Positives = 37/74 (50%), Frame = +3
Query: 102 MSTKQGGKAKPLKKPKSDKKDYDE--------VDMANIQKKKEEEKALKELKAKAQQ--K 251
M+++QG + + K P+ +KKD D+ V K E ++ L E ++K Q K
Sbjct: 1 MASQQGQQTR--KIPEQEKKDLDQRAAKGETVVPGGTRGKSLEAQERLAEGRSKGGQTRK 58
Query: 252 GSFGGSGLKKSGKK*G 299
G G K+ GKK G
Sbjct: 59 DQLGTEGYKEMGKKGG 74
>gi|5921900|sp|O46590|COX4_SAIUS CYTOCHROME C OXIDASE POLYPEPTIDE IV
>gi|6166027|sp||COX4_SAISC_1 [Segment 1 of 2] CYTOCHROME C OXIDASE
POLYPEPTIDE IV >gi|2809535|gb|AAB97759.1| (AF042779) cytochrome c
oxidase subunit IV [Saimiri ustus] >gi|2895585|gb|AAC02988.1|
(AF042764) cytochrome c oxidase subunit IV [Saimiri sciureus]
Length = 55
Frame 3 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | 55
0 20 40
Plus Strand HSPs:
Score = 60 (21.1 bits), Expect = 10., P = 1.0
Identities = 15/40 (37%), Positives = 25/40 (62%), Frame = +3
Query: 123 KAKPLKKPKS-DKKDYDEVDMANIQKKKEEEKALKELKAKA 242
K++ +P D++DY D+A+++ +KALKE K KA
Sbjct: 4 KSEDYARPSYVDRRDYPLPDVAHVRHLSASQKALKE-KEKA 43
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.357 0.160 0.549
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.363 0.165 0.634
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.349 0.153 0.533
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.150 0.562
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.344 0.152 0.469
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.342 0.146 0.465
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 187 184 10. 76 3 12 22 0.12 34
31 0.12 37
+2 0 187 184 10. 76 3 12 22 0.12 34
31 0.12 37
+1 0 188 187 10. 76 3 12 22 0.12 34
31 0.12 37
-1 0 188 185 10. 76 3 12 22 0.12 34
31 0.12 37
-2 0 187 186 10. 76 3 12 22 0.12 34
31 0.12 37
-3 0 187 184 10. 76 3 12 22 0.12 34
31 0.12 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 15
No. of states in DFA: 589 (58 KB)
Total size of DFA: 205 KB (256 KB)
Time to generate neighborhood: 0.00u 0.02s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 181.56u 0.94s 182.50t Elapsed: 00:00:43
Total cpu time: 181.58u 0.99s 182.57t Elapsed: 00:00:43
Start: Thu Jan 17 12:04:52 2002 End: Thu Jan 17 12:05:35 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000