Package nix.util.bio.parsers.gff

GFF2 and GFF3 parsers.

See:
Description

Class Summary

DmelRel4Extractor	Class for building gene models from GFF3Features, specifically tailored to release 4.0 drosophila melanogaster GFF.
GadFlyGffExtractor	Class for building annotation objects from GffFeatures, basically a converter, specific to the old dmel GadFly annotation.
Gff3Feature	A container for each of the values in a GFF3 line.
Gff3Parser	For parsing a GFF3 text file into GFF3Feature objects, be sure to set the regExTypes String filter to match which types you want to save!
GffFeature	A container for each of the values in a GFF 2 line.
GffParser	Parses GFF files extracting the annotation according to GFF(2).

Package nix.util.bio.parsers.gff Description

GFF2 and GFF3 parsers.