BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query             position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence          begin  end (left)    repeat   class/family  begin  end (left)  ID

  189   0.0  0.0  0.0  C01D04_CONSENSUS      1   21  (566) +  (T)n     Simple_repeat     1   21    (0)      

Alignments:
189  0.00  0.00  0.00  C01D04_CONSENSUS  1  21  (566)  C  (A)n#Simple_repeat  (159)  21  1  5

  C01D04_CONSENSU      1 TTTTTTTTTTTTTTTTTTTTT 21     
                                              
C (A)n#Simple_rep     21 TTTTTTTTTTTTTTTTTTTTT 1      

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 21), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>C01D04_CONSENSUS
NNNNNNNNNNNNNNNNNNNNNAGGAAAGGAGCATACATAGATGACATTTT
TTTTTTTATTTTACATTATCCTAAGGCTTTATTTTTAAGCTAATGTTGGT
CCCATTCCATCCAATTGGATTGACTTCCCACTCGAGGAATGCTGTTGACT
CTGGCGAACTTATCAACTTTGAAGTTGGCCCCACACATGGCCCCTTCACT
GTCCACTCTTGGCATTGCCTTCAACTTGTTCATTGGATGCTCAAAGCTCA
TCANACCTCCTTCACTGTGAAACATACACCCTGTTGGAAAGGGAGCAAAG
GATTTGGCACAACCCTCTTTTATGACTTCTANATCATCANANATCACCAC
AGATCCATCCAGCTGCAATACCCCAATACAGCTTCACTCCTCCCATCCAN
AACCCAGTGCTGCAAANACACTGCCAACCTTGCTGTCATAGACAACAAAG
GCAAAACTGCCATCAAGCTCCTTGACAACTTGATCTGCAGGGTTATGGAC
CCCGGTCCACGGAGTGTTCTTGTTNAGCTTCAATAACAAACATGGCCTCC
ATCCAGTACTCTTTGAAAATCCCATATTGCTTGTTGA

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       587 bp
GC level:         42.24 %
bases masked:        21 bp (  3.58 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           21 bp     3.58 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  C01D04_CONSENSUS
        (587 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 3 Sequences     : less than 3 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 779 167 |=======================================================
   6310 612 102 |==================================
   3980 510 161 |=====================================================
   2510 349  99 |=================================
   1580 250  69 |=======================
   1000 181  59 |===================
    631 122  34 |===========
    398  88  27 |=========
    251  61  12 |====
    158  49   7 |==
    100  42   6 |==
   63.1  36   3 |=
   39.8  33   8 |==
   25.1  25   3 |=
   15.8  22   2 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 20  <<<<<<<<<<<<<<<<<
   10.0  20   1 |:
   6.31  19   0 |
   3.98  19   0 |
   2.51  19   4 |=
   1.58  15   3 |=
   1.00  12   0 |
   0.63  12   0 |
   0.40  12   0 |
   0.25  12   0 |
   0.16  12   0 |
   0.10  12   0 |
  0.063  12   0 |
  0.040  12   0 |
  0.025  12   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|9857931|gb|AAG00940.1|(AF272360) unknown [Glycine ... -1   558  5.5e-53   1
gi|7486256|pir||T08937hypothetical protein F27G19.50 ... -1   462  2.0e-48   2
gi|7021730|gb|AAF35411.1|(AC024081) unknown protein [... -1   426  5.3e-39   1
gi|542200|pir||S41890hypothetical protein - garden as... -1   421  1.8e-38   1
gi|7489016|pir||T06355hypothetical protein - tomato >... -1   421  1.8e-38   1
gi|11994714|dbj|BAB03030.1|(AP001300) contains simila... -1   317  1.9e-27   1
gi|10177953|dbj|BAB11312.1|(AB026651) aluminum-induce... -1   308  1.7e-26   1
gi|2586153|gb|AAB82779.1|(AF001530) ripening-associat... -1   217  7.5e-17   1
gi|7488440|pir||T07830aluminum-induced protein - rape... -1   201  3.7e-15   1
gi|7488881|pir||T07820hypothetical protein ARG10 - mu... -1   200  4.8e-15   1
gi|7489671|pir||T06984hypothetical protein wali7 - wh... -1   184  2.4e-13   1
gi|136452|sp|P24805|TSJT_TOBACSTEM-SPECIFIC PROTEIN T... -1    95  0.021     1
gi|2323290|gb|AAB66530.1|(AF010417) ORF-3 [Hepatitis ... -1    43  0.70      2
gi|2745983|gb|AAB94809.1|(AF001275) ORF-3 [Hepatitis ... -1    43  0.70      2
gi|2323306|gb|AAB66542.1|(AF010421) ORF-3 [Hepatitis ... -1    42  0.79      2
gi|3859536|gb|AAC72837.1|(AF095453) asparagine synthe... -1    90  0.84      1
gi|8843765|dbj|BAA97313.1|(AB019236) asparagine synth... -1    90  0.84      1
gi|3859534|gb|AAC72836.1|(AF095452) asparagine synthe... -1    89  0.91      1
gi|11272672|pir||T50812asparagine synthetase ASN3 - A... -1    89  0.91      1
gi|3182921|sp|Q43011|ASNS_ORYSAASPARAGINE SYNTHETASE ... -1    85  0.9992    1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame -1 Hits
gi|9857931             |                                                  
gi|7486256             |                                                  
gi|7021730             |                                                  
gi|542200              |                                                  
gi|7489016             |                                                  
gi|11994714            |                                                  
gi|10177953            |                                                  
gi|2586153             |                                                  
gi|7488440             |                                                  
gi|7488881             |                                                  
gi|7489671             |                                                  
gi|136452              |                                  ________        
gi|2323290             |                                             _____
gi|2745983             |                                             _____
gi|2323306             |                                             _____
gi|3859536             |                                                  
gi|8843765             |                                                  
gi|3859534             |                                                  
gi|11272672            |                                                  
gi|3182921             |                                                  
                        __________________________________________________
Query sequence:        |            |            |            |           | 196
                       0           50          100          150


Locus_ID                Frame -3 Hits
gi|9857931             |                                                  
gi|7486256             |                              ____       _________
gi|7021730             |                                                  
gi|2323290             |                                     _____        
gi|2745983             |                                     _____        
gi|2323306             |                                     _____        
                        __________________________________________________
Query sequence:        |            |            |            |           | 196
                       0           50          100          150


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|9857931|gb|AAG00940.1|  (AF272360) unknown [Glycine max]
            Length = 256

Frame -1 hits (HSPs):                           __________________________
Frame -3 hits (HSPs):                     _______________                 
                        __________________________________________________
Database sequence:     |         |         |         |        |         | | 256
                       0        50       100       150      200       250

  Minus Strand HSPs:

 Score = 558 (196.4 bits), Expect = 5.5e-53, P = 5.5e-53
 Identities = 110/133 (82%), Positives = 113/133 (84%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYD-SKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKE 315
             PADQ VKELDGSF  VVYD ++ GSVFAALG         G+   DGSVV  DD EVIKE
Sbjct:   124 PADQFVKELDGSFGLVVYDQARFGSVFAALGSDGGVKLYWGIAA-DGSVVISDDLEVIKE 182

Query:   314 GCAKSFAPFPTGCMFHSEGGXMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIP 135
             GCAKSFAPFPTGCMFHSEGG MSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIP
Sbjct:   183 GCAKSFAPFPTGCMFHSEGGLMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIP 242

Query:   134 RVGSQSNWMEWDQH 93
             RVGSQSNWMEWDQH
Sbjct:   243 RVGSQSNWMEWDQH 256

 Score = 108 (38.0 bits), Expect = 0.0031, P = 0.0030
 Identities = 33/75 (44%), Positives = 38/75 (50%), Frame = -3

Query:   585 NKQYGIFKEYWMEAMFVIEAXQEHSVDRGP*PCRSSCQGA*WQFCLCCL*QQGWQCXCST 406
             NKQYG+ K    EAMFVIEA +    DRGP P     +     F L    Q  +    + 
Sbjct:    95 NKQYGLSKRK-NEAMFVIEAYRTFR-DRGPYPADQFVKELDGSFGLVVYDQARFGSVFAA 152

Query:   405 GXWMGGVKLYWGIAA 361
                 GGVKLYWGIAA
Sbjct:   153 LGSDGGVKLYWGIAA 167


 >gi|7486256|pir||T08937  hypothetical protein F27G19.50 - Arabidopsis thaliana
            >gi|4972070|emb|CAB43877.1| (AL078467) putative protein
            [Arabidopsis thaliana] >gi|7269599|emb|CAB81395.1| (AL161571)
            putative protein [Arabidopsis thaliana]
            Length = 266

Frame -1 hits (HSPs):                         ____________________________
Frame -3 hits (HSPs):                    ______        ___                
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 266
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 462 (162.6 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
 Identities = 97/142 (68%), Positives = 107/142 (75%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAALGXGWE----------E*SCIGV-----LQLD 357
             PADQVVK+LDGSF+FVVYDSK GSVF AL    +            S  GV     +  D
Sbjct:   123 PADQVVKDLDGSFSFVVYDSKAGSVFTALVLIHKISPRLLELNFNGSDGGVKLYWGIAAD 182

Query:   356 GSVVXXDDXEVIKEGCAKSFAPFPTGCMFHSEGGXMSFEHPMNKLKAMPRVDSEGAMCGA 177
             GSVV  DD +VIKEGCAKSFAPFPTGCMFHSEGG MSFEHPMNK+KAMPRVDSEG +CGA
Sbjct:   183 GSVVISDDLDVIKEGCAKSFAPFPTGCMFHSEGGLMSFEHPMNKIKAMPRVDSEGVLCGA 242

Query:   176 NFKVDKFARVNSIPRVGSQSNW 111
             NFKVD + RVNSIPR GS++NW
Sbjct:   243 NFKVDVYNRVNSIPRRGSEANW 264

 Score = 70 (24.6 bits), Expect = 2.0e-48, Sum P(2) = 2.0e-48
 Identities = 19/32 (59%), Positives = 21/32 (65%), Frame = -3

Query:   585 NKQYGIFKEYWMEAMFVIEAXQEHSVDRGP*P 490
             NKQYG+ K    EAMFVIEA +    DRGP P
Sbjct:    94 NKQYGLTKTT-NEAMFVIEAYRTLR-DRGPYP 123

 Score = 61 (21.5 bits), Expect = 0.20, Sum P(2) = 0.18
 Identities = 11/11 (100%), Positives = 11/11 (100%), Frame = -3

Query:   393 GGVKLYWGIAA 361
             GGVKLYWGIAA
Sbjct:   171 GGVKLYWGIAA 181


 >gi|7021730|gb|AAF35411.1|  (AC024081) unknown protein [Arabidopsis thaliana]
            Length = 253

Frame -1 hits (HSPs):                          __________________________ 
Frame -3 hits (HSPs):                    ________________                 
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 253
                       0        50       100       150       200       250

  Minus Strand HSPs:

 Score = 426 (150.0 bits), Expect = 5.3e-39, P = 5.3e-39
 Identities = 79/127 (62%), Positives = 99/127 (77%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEG 312
             PADQV++ L+GSFAFVVYD++  SVF+AL     E S    +  DGSVV  DD ++IK+G
Sbjct:   122 PADQVLRGLEGSFAFVVYDTQTSSVFSALSSDGGE-SLYWGISGDGSVVMSDDIQIIKQG 180

Query:   311 CAKSFAPFPTGCMFHSEGGXMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIPR 132
             CAKSFAPFP GCMFHSE G  SF+HP N +KAMPR+DSEG +CGA+FKVD  +++NSIPR
Sbjct:   181 CAKSFAPFPNGCMFHSETGLKSFDHPTNMMKAMPRIDSEGVLCGASFKVDACSKINSIPR 240

Query:   131 VGSQSNW 111
              GS++NW
Sbjct:   241 RGSEANW 247

 Score = 89 (31.3 bits), Expect = 0.66, P = 0.49
 Identities = 27/74 (36%), Positives = 34/74 (45%), Frame = -3

Query:   585 NKQYGIFKEYWMEAMFVIEAXQEHSVDRGP*PCRSSCQGA*WQFCLCCL*QQGWQCXCST 406
             N+QYG+  +   EAMFVIEA +    DRGP P     +G    F       Q      + 
Sbjct:    92 NRQYGLSGKNSNEAMFVIEAYRTLR-DRGPYPADQVLRGLEGSFAFVVYDTQTSSVFSAL 150

Query:   405 GXWMGGVKLYWGIA 364
                 GG  LYWGI+
Sbjct:   151 SS-DGGESLYWGIS 163


 >gi|542200|pir||S41890  hypothetical protein - garden asparagus
            >gi|452714|emb|CAA54526.1| (X77320) unknown [Asparagus officinalis]
            Length = 259

Frame -1 hits (HSPs):                           __________________________
Annotated Domains:      ______________________________                    
                        __________________________________________________
Database sequence:     |         |         |        |         |         | | 259
                       0        50       100      150       200       250
__________________

Annotated Domains:
   DOMO                 DM05788:                                 1..153
__________________


  Minus Strand HSPs:

 Score = 421 (148.2 bits), Expect = 1.8e-38, P = 1.8e-38
 Identities = 81/133 (60%), Positives = 97/133 (72%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEG 312
             PADQV+K+L+GSFAFV+YD+K GSVFAA           GV   DGS V  DD  V+K G
Sbjct:   126 PADQVLKDLNGSFAFVIYDNKTGSVFAAQSYDGRVPLFWGVA-CDGSAVICDDLNVMKSG 184

Query:   311 CAKSFAPFPTGCMFHSEGGXMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIPR 132
             C KSFAPFP GCMF SEGG  SFE PMNK+KA+PRVDSEG MCG+ FKVD   +++++PR
Sbjct:   185 CGKSFAPFPNGCMFSSEGGLKSFERPMNKMKAVPRVDSEGTMCGSFFKVDSCTKISTMPR 244

Query:   131 VGSQSNWMEW-DQH 93
             VGS ++W  W D H
Sbjct:   245 VGSSADWTSWEDSH 258


 >gi|7489016|pir||T06355  hypothetical protein - tomato >gi|643469|gb|AAA61967.1|
            (U19886) unknown [Lycopersicon esculentum]
            Length = 295

Frame -1 hits (HSPs):                              _______________________
                        __________________________________________________
Database sequence:     |        |       |        |       |        |       | 295
                       0       50     100      150     200      250

  Minus Strand HSPs:

 Score = 421 (148.2 bits), Expect = 1.8e-38, P = 1.8e-38
 Identities = 79/132 (59%), Positives = 98/132 (74%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEG 312
             PA QV+KEL+GSF FV+YD K  +VF ALG G E+      +  DGSV+  D+ + IK  
Sbjct:   165 PAHQVLKELEGSFGFVIYDHKADTVFVALG-GDEKVKLFWGIAFDGSVMISDNVDHIKAS 223

Query:   311 CAKSFAPFPTGCMFHSEGGXMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIPR 132
             C KSFAPFP+GCM+HSE G  S+EHP  K+KAMPRVDSEG+MCGA FKVD +++VNS+PR
Sbjct:   224 CIKSFAPFPSGCMYHSETGLKSYEHPSYKMKAMPRVDSEGSMCGAYFKVDVYSKVNSMPR 283

Query:   131 VGSQSNWMEWDQ 96
             VGS +NW  W Q
Sbjct:   284 VGSSANWATWGQ 295


 >gi|11994714|dbj|BAB03030.1|  (AP001300) contains similarity to unknown
            protein~gb|AAF35411.1~gene_id:F5N5.2 [Arabidopsis thaliana]
            Length = 248

Frame -1 hits (HSPs):                          __________________________ 
                        __________________________________________________
Database sequence:     |         |         |          |         |         | 248
                       0        50       100        150       200

  Minus Strand HSPs:

 Score = 317 (111.6 bits), Expect = 1.9e-27, P = 1.9e-27
 Identities = 61/126 (48%), Positives = 78/126 (61%), Frame = -1

Query:   488 ADQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEGC 309
             A+QVV++  G F F++YD    +VF A           G    +G +V  DD E +K+GC
Sbjct:   120 AEQVVRDFQGKFGFMLYDCSTQNVFLAGDVDGSVPLYWGT-DAEGHLVVSDDVETVKKGC 178

Query:   308 AKSFAPFPTGCMFHSEGGXMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNSIPRV 129
              KSFAPFP GC F S GG  S+EHP N+LK +PRVDS G +CG  FKVD  A+  ++PRV
Sbjct:   179 GKSFAPFPKGCFFTSSGGLRSYEHPSNELKPVPRVDSSGEVCGVTFKVDSEAKKEAMPRV 238

Query:   128 GSQSNW 111
             GS  NW
Sbjct:   239 GSVQNW 244


 >gi|10177953|dbj|BAB11312.1|  (AB026651) aluminum-induced protein-like
            [Arabidopsis thaliana]
            Length = 251

Frame -1 hits (HSPs):                          ___________________________
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 251
                       0        50       100       150       200       250

  Minus Strand HSPs:

 Score = 308 (108.4 bits), Expect = 1.7e-26, P = 1.7e-26
 Identities = 61/128 (47%), Positives = 80/128 (62%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEG 312
             P D+VV++  G FAF+++DS   +VFAA           G    +G +V  D+ E++K+G
Sbjct:   120 PVDKVVRDFHGKFAFILFDSVKKTVFAAADADGSVPFFWGT-DAEGHLVFSDNTEMVKKG 178

Query:   311 CAKSFAPFPTGCMFHSEGGXMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNS--I 138
             CAKS+ PFP GC F S GG  SFEHP N+LK +PRVDS G +CGA FKVD   +     +
Sbjct:   179 CAKSYGPFPKGCFFTSSGGLRSFEHPKNELKPVPRVDSSGDVCGATFKVDAETKREGTKM 238

Query:   137 PRVGSQSNW 111
             PRV S  NW
Sbjct:   239 PRVDSSQNW 247


 >gi|2586153|gb|AAB82779.1|  (AF001530) ripening-associated protein [Musa
            acuminata]
            Length = 68

Frame -1 hits (HSPs):   _______________________________________________   
                        __________________________________________________
Database sequence:     |             |              |              |      | 68
                       0            20             40             60

  Minus Strand HSPs:

 Score = 217 (76.4 bits), Expect = 7.5e-17, P = 7.5e-17
 Identities = 39/64 (60%), Positives = 49/64 (76%), Frame = -1

Query:   299 FAPFPTGCMFHSEGGXMSFEHPMNKLKAMPRVDSEGAMCGANFKVDKFARVNS-IPRVGS 123
             FAPFP GC F + GG  SFEHP+N+LKAMPRVDS+G +CGA +KVD  A+  + +PRV S
Sbjct:     1 FAPFPKGCFFTTSGGLXSFEHPLNELKAMPRVDSQGXVCGATYKVDDQAKKETRMPRVDS 60

Query:   122 QSNW 111
              +NW
Sbjct:    61 AANW 64


 >gi|7488440|pir||T07830  aluminum-induced protein - rape
            >gi|3123745|dbj|BAA25999.1| (AB013447) aluminum-induced [Brassica
            napus]
            Length = 244

Frame -1 hits (HSPs):                           _______________________   
                        __________________________________________________
Database sequence:     |          |         |         |         |         | 244
                       0         50       100       150       200

  Minus Strand HSPs:

 Score = 201 (70.8 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 46/109 (42%), Positives = 61/109 (55%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEG 312
             PA+ VV  L G FAFVV+D    ++F A     +     G+   DG V   DD E++K  
Sbjct:   120 PANHVVSHLSGDFAFVVFDKSTSTLFVASDQEGKVPLYWGITA-DGYVAFADDIELLKGA 178

Query:   311 CAKSFAPFPTGCMFHSE-GGXMSFEHPMNKLKAMPRVDSEGAMCGANFKV 165
             C KS A FP GC + +  GG  SFE+P NK+ A+P  + E  + GA FKV
Sbjct:   179 CGKSLASFPQGCFYSTALGGLRSFENPKNKITAIPAREEE--IWGATFKV 226


 >gi|7488881|pir||T07820  hypothetical protein ARG10 - mung bean
            >gi|2970051|dbj|BAA25187.1| (AB012110) ARG10 [Vigna radiata]
            Length = 237

Frame -1 hits (HSPs):                            _______________________  
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 237
                       0         50       100        150       200

  Minus Strand HSPs:

 Score = 200 (70.4 bits), Expect = 4.8e-15, P = 4.8e-15
 Identities = 44/110 (40%), Positives = 63/110 (57%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEG 312
             PA++VV  L GSFAF+V+D    +VF A     +     G+   DG V   DD +++K  
Sbjct:   120 PANRVVCHLSGSFAFIVFDKSTSTVFVASDQAGKVPLYWGITA-DGYVAFADDADLLKGS 178

Query:   311 CAKSFAPFPTGCMFHSE-GGXMSFEHPMNKLKAMPRVDSEGAMCGANFKVD 162
             C KS A FP GC + +  GG   +E+P NK+ A+P  + E  + GA FKV+
Sbjct:   179 CGKSLASFPQGCFYSTAVGGLRCYENPKNKITAVPAEEEE--IWGATFKVE 227


 >gi|7489671|pir||T06984  hypothetical protein wali7 - wheat (fragment)
            >gi|451193|gb|AAC37416.1| (L28008) wali7 [Triticum aestivum]
            >gi|1090845|prf||2019486B wali7 gene [Triticum aestivum]
            Length = 270

Frame -1 hits (HSPs):                        ____________________         
                        __________________________________________________
Database sequence:     |         |        |        |        |         |   | 270
                       0        50      100      150      200       250

  Minus Strand HSPs:

 Score = 184 (64.8 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 40/105 (38%), Positives = 61/105 (58%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEG 312
             PA  ++ +L GS+AFV++D    S+  A     +     G+   DG V   DD +++K  
Sbjct:   119 PASFMLSQLTGSYAFVLFDKSTSSLLVASDPEGKVPLFWGITA-DGCVAFSDDIDLLKGS 177

Query:   311 CAKSFAPFPTGCMF-HSEGGXMSFEHPMNKLKAMPRVDSEGAMCGA 177
             C KS APFP GC + ++ GG  S+E+P NK+ A+P  + E  +CGA
Sbjct:   178 CGKSLAPFPQGCFYWNALGGLKSYENPKNKVTAVPADEEE--ICGA 221


 >gi|136452|sp|P24805|TSJT_TOBAC  STEM-SPECIFIC PROTEIN TSJT1
            >gi|100383|pir||S13551 stem-specific protein - common tobacco
            >gi|20037|emb|CAA36525.1| (X52283) stem specific, weakly expressed
            in other organs [Nicotiana tabacum]
            Length = 149

Frame -1 hits (HSPs):                                           __________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 149
                       0               50              100
__________________

Annotated Domains:
   DOMO                 DM05788:                                 1..148
   PRODOM               PD010969: Q40127(2)                      1..148
__________________


  Minus Strand HSPs:

 Score = 95 (33.4 bits), Expect = 0.021, P = 0.021
 Identities = 16/28 (57%), Positives = 23/28 (82%), Frame = -1

Query:   491 PADQVVKELDGSFAFVVYDSKVGSVFAA 408
             P DQV+KEL+G FAF+++DSK  ++F A
Sbjct:   121 PPDQVIKELEGKFAFILFDSKASTLFLA 148


 >gi|2323290|gb|AAB66530.1|  (AF010417) ORF-3 [Hepatitis E virus]
            >gi|2323294|gb|AAB66533.1| (AF010418) ORF-3 [Hepatitis E virus]
            >gi|2323298|gb|AAB66536.1| (AF010419) ORF-3 [Hepatitis E virus]
            >gi|2323302|gb|AAB66539.1| (AF010420) ORF-3 [Hepatitis E virus]
            >gi|2323310|gb|AAB66545.1| (AF010422) ORF-3 [Hepatitis E virus]
            Length = 53

Frame -1 hits (HSPs):   ________________                                  
Frame -3 hits (HSPs):                      __________                     
                        __________________________________________________
Database sequence:     |                 |                  |             | 53
                       0                20                 40

  Minus Strand HSPs:

 Score = 43 (15.1 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 8/16 (50%), Positives = 10/16 (62%), Frame = -1

Query:   581 SNMGFSKSTGWRPCLL 534
             +NM F+   G RPC L
Sbjct:     2 NNMSFAAPMGSRPCAL 17

 Score = 41 (14.4 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = -3

Query:   489 CRSSCQGA*WQFCLCC 442
             C SSC      FCLCC
Sbjct:    22 CCSSC------FCLCC 31


 >gi|2745983|gb|AAB94809.1|  (AF001275) ORF-3 [Hepatitis E virus]
            >gi|2745987|gb|AAB94812.1| (AF001276) ORF-3 [Hepatitis E virus]
            Length = 59

Frame -1 hits (HSPs):   ______________                                    
Frame -3 hits (HSPs):                    _________                        
                        __________________________________________________
Database sequence:     |                |                |                | 59
                       0               20               40

  Minus Strand HSPs:

 Score = 43 (15.1 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 8/16 (50%), Positives = 10/16 (62%), Frame = -1

Query:   581 SNMGFSKSTGWRPCLL 534
             +NM F+   G RPC L
Sbjct:     2 NNMSFAAPMGSRPCAL 17

 Score = 41 (14.4 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = -3

Query:   489 CRSSCQGA*WQFCLCC 442
             C SSC      FCLCC
Sbjct:    22 CCSSC------FCLCC 31


 >gi|2323306|gb|AAB66542.1|  (AF010421) ORF-3 [Hepatitis E virus]
            Length = 53

Frame -1 hits (HSPs):   ________________                                  
Frame -3 hits (HSPs):                      __________                     
                        __________________________________________________
Database sequence:     |                 |                  |             | 53
                       0                20                 40

  Minus Strand HSPs:

 Score = 42 (14.8 bits), Expect = 1.6, Sum P(2) = 0.79
 Identities = 8/16 (50%), Positives = 10/16 (62%), Frame = -1

Query:   581 SNMGFSKSTGWRPCLL 534
             +NM F+   G RPC L
Sbjct:     2 NNMSFAVPMGSRPCAL 17

 Score = 41 (14.4 bits), Expect = 1.6, Sum P(2) = 0.79
 Identities = 9/16 (56%), Positives = 9/16 (56%), Frame = -3

Query:   489 CRSSCQGA*WQFCLCC 442
             C SSC      FCLCC
Sbjct:    22 CCSSC------FCLCC 31


 >gi|3859536|gb|AAC72837.1|  (AF095453) asparagine synthetase [Arabidopsis
            thaliana]
            Length = 578

Frame -1 hits (HSPs):            ________                                 
                        __________________________________________________
Database sequence:     |            |            |            |           | 578
                       0          150          300          450

  Minus Strand HSPs:

 Score = 90 (31.7 bits), Expect = 1.8, P = 0.84
 Identities = 27/84 (32%), Positives = 43/84 (51%), Frame = -1

Query:   485 DQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEGCA 306
             ++ +  LDG FAFV+ D++  S  AA          IG   LDGSV    + + + + C 
Sbjct:   111 EEFIDMLDGMFAFVLLDTRDKSFIAARDAIGITPLYIG-WGLDGSVWFASEMKALSDDC- 168

Query:   305 KSFAPFPTGCMFHS-EGGXMSFEHP 234
             + F  FP G ++ S +GG   + +P
Sbjct:   169 EQFMSFPPGHIYSSKQGGLRRWYNP 193


 >gi|8843765|dbj|BAA97313.1|  (AB019236) asparagine synthetase [Arabidopsis
            thaliana]
            Length = 578

Frame -1 hits (HSPs):            ________                                 
                        __________________________________________________
Database sequence:     |            |            |            |           | 578
                       0          150          300          450

  Minus Strand HSPs:

 Score = 90 (31.7 bits), Expect = 1.8, P = 0.84
 Identities = 27/84 (32%), Positives = 43/84 (51%), Frame = -1

Query:   485 DQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEGCA 306
             ++ +  LDG FAFV+ D++  S  AA          IG   LDGSV    + + + + C 
Sbjct:   111 EEFIDMLDGMFAFVLLDTRDKSFIAARDAIGITPLYIG-WGLDGSVWFASEMKALSDDC- 168

Query:   305 KSFAPFPTGCMFHS-EGGXMSFEHP 234
             + F  FP G ++ S +GG   + +P
Sbjct:   169 EQFMSFPPGHIYSSKQGGLRRWYNP 193


 >gi|3859534|gb|AAC72836.1|  (AF095452) asparagine synthetase [Arabidopsis
            thaliana]
            Length = 578

Frame -1 hits (HSPs):            ________                                 
                        __________________________________________________
Database sequence:     |            |            |            |           | 578
                       0          150          300          450

  Minus Strand HSPs:

 Score = 89 (31.3 bits), Expect = 2.4, P = 0.91
 Identities = 28/84 (33%), Positives = 43/84 (51%), Frame = -1

Query:   485 DQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEGCA 306
             ++ V  LDG FAFV+ D++  S  AA          IG   LDGSV    + + + + C 
Sbjct:   111 EEFVDMLDGMFAFVLLDTRDKSFIAARDAIGITPLYIG-WGLDGSVWFASEMKALSDDC- 168

Query:   305 KSFAPFPTGCMFHS-EGGXMSFEHP 234
             + F  FP G ++ S +GG   + +P
Sbjct:   169 EQFMCFPPGHIYSSKQGGLRRWYNP 193


 >gi|11272672|pir||T50812  asparagine synthetase ASN3 - Arabidopsis thaliana
            >gi|8953405|emb|CAB96680.1| (AL360334) asparagine synthetase ASN3
            [Arabidopsis thaliana]
            Length = 578

Frame -1 hits (HSPs):            ________                                 
                        __________________________________________________
Database sequence:     |            |            |            |           | 578
                       0          150          300          450

  Minus Strand HSPs:

 Score = 89 (31.3 bits), Expect = 2.4, P = 0.91
 Identities = 28/84 (33%), Positives = 43/84 (51%), Frame = -1

Query:   485 DQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEGCA 306
             ++ V  LDG FAFV+ D++  S  AA          IG   LDGSV    + + + + C 
Sbjct:   111 EEFVDMLDGMFAFVLLDTRDKSFIAARDAIGITPLYIG-WGLDGSVWFASEMKALSDDC- 168

Query:   305 KSFAPFPTGCMFHS-EGGXMSFEHP 234
             + F  FP G ++ S +GG   + +P
Sbjct:   169 EQFMCFPPGHIYSSKQGGLRRWYNP 193


 >gi|3182921|sp|Q43011|ASNS_ORYSA  ASPARAGINE SYNTHETASE [GLUTAMINE-HYDROLYZING]
            (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHETASE) >gi|7438076|pir||T03602
            probable asparagine synthase (glutamine-hydrolyzing) (EC 6.3.5.4) -
            rice >gi|1432054|gb|AAB03991.1| (U55873) asparagine synthetase
            [Oryza sativa] >gi|1902992|dbj|BAA18951.1| (D83378) asparagine
            synthetase [Oryza sativa]
            Length = 591

Frame -1 hits (HSPs):            ________                                 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |            |            |           |            | 591
                       0          150          300         450
__________________

Annotated Domains:
   BLOCKS               BL00443A: Glutamine amidotransferases cl 27..36
   BLOCKS               BL00443B: Glutamine amidotransferases cl 48..61
   BLOCKS               BL00443C: Glutamine amidotransferases cl 71..84
   BLOCKS               BL00443D: Glutamine amidotransferases cl 132..147
   BLOCKS               BL00443E: Glutamine amidotransferases cl 350..359
   BLOCKS               BL00443F: Glutamine amidotransferases cl 390..405
   Entrez               active site: GATASE (BY SIMILARITY).     2
   PFAM                 GATase_2: Glutamine amidotransferases cl 1..147
   PFAM                 Asn_synthase: Asparagine synthase        166..536
   PRODOM               PD000635: GLMS(21) PUR1(14) ASNS(11)     1..133
   PRODOM               PD002347: ASNS(7) ASN1(3) ASN2(3)        137..200
   PRODOM               PD008420: ASNS(7) ASN1(3) ASN2(3)        203..258
   PRODOM               PD022552: ASNS(7) ASN1(3) ASN2(3)        260..298
   PRODOM               PD001586: ASNS(11) ASNH(4) ASN1(3)       300..466
   PRODOM               PD002653: ASNS(11) ASN1(2) ASN2(2)       468..506
   PRODOM               PD003896: ASNS(6) ASN1(2) ASN2(2)        508..548
   PRODOM               PD102888: ASNS_ORYSA                     550..589
__________________


  Minus Strand HSPs:

 Score = 85 (29.9 bits), Expect = 7.1, P = 1.0
 Identities = 27/84 (32%), Positives = 43/84 (51%), Frame = -1

Query:   485 DQVVKELDGSFAFVVYDSKVGSVFAALGXGWEE*SCIGVLQLDGSVVXXDDXEVIKEGCA 306
             ++ V  LDG FAFV+ D++  S  AA          +G   LDGSV    + + + + C 
Sbjct:   111 EEFVDMLDGMFAFVLLDTRDKSFIAARDAIGICPLYMG-WGLDGSVWFSSEMKALSDDCE 169

Query:   305 KSFAPFPTGCMFHSE-GGXMSFEHP 234
             + F  FP G ++ S+ GG   + +P
Sbjct:   170 R-FISFPPGHLYSSKTGGLRRWYNP 193


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.93

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.340   0.148   0.524  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.342   0.150   0.567  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.336   0.145   0.474  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.327   0.140   0.459  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.350   0.153   0.563  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.356   0.156   0.619  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      195       181       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +2      0      195       181       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +1      0      195       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -1      0      195       184       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -2      0      195       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -3      0      195       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  20
  No. of states in DFA:  597 (59 KB)
  Total size of DFA:  236 KB (256 KB)
  Time to generate neighborhood:  0.02u 0.00s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  195.15u 1.51s 196.66t  Elapsed: 00:00:35
  Total cpu time:  195.21u 1.52s 196.73t  Elapsed: 00:00:35
  Start:  Wed Oct  3 11:10:45 2001   End:  Wed Oct  3 11:11:20 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000