BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SAG0389
(880 letters)
Database: nr
1,487,057 sequences; 479,114,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus aga... 1699 0.0
gi|21909681|ref|NP_663949.1| DNA-directed DNA polymerase I [Stre... 1323 0.0
gi|19745349|ref|NP_606485.1| DNA-directed DNA polymerase I [Stre... 1322 0.0
gi|24378800|ref|NP_720755.1| DNA polymerase I (POL I) [Streptoco... 1322 0.0
gi|15674390|ref|NP_268564.1| DNA-directed DNA polymerase I [Stre... 1319 0.0
gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pne... 1278 0.0
gi|98023|pir||A32949 DNA-directed DNA polymerase (EC 2.7.7.7) - ... 1276 0.0
gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pne... 1274 0.0
gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lacti... 1150 0.0
gi|6015003|sp|O32801|DPO1_LACLC DNA polymerase I (POL I) >gnl|BL... 1140 0.0
gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faec... 984 0.0
gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lact... 936 0.0
gi|22990810|ref|ZP_00035605.1| hypothetical protein [Enterococcu... 928 0.0
gi|23003058|ref|ZP_00046728.1| hypothetical protein [Lactobacill... 891 0.0
gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus ih... 843 0.0
gi|1205984|gb|AAB52611.1| DNA polymerase I 837 0.0
gi|2126855|pir||S70368 DNA polymerase I - Bacillus stearothermop... 835 0.0
gi|3041672|sp|P52026|DPO1_BACST DNA polymerase I (POL I) 833 0.0
gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus A... 829 0.0
gi|755588|gb|AAA85558.1| DNA polymerase 826 0.0
gi|21402630|ref|NP_658615.1| DNA_pol_A, DNA polymerase family A ... 822 0.0
gi|1363435|pir||JC4286 DNA-directed DNA polymerase (EC 2.7.7.7) ... 820 0.0
gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearot... 818 0.0
gi|23024946|ref|ZP_00064132.1| hypothetical protein [Leuconostoc... 813 0.0
gi|416913|sp|Q04957|DPO1_BACCA DNA polymerase I (POL I) >gnl|BL_... 813 0.0
gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodura... 790 0.0
gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocyto... 789 0.0
gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus ep... 788 0.0
gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua]... 786 0.0
gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus au... 785 0.0
gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus au... 785 0.0
gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis... 783 0.0
gi|23037507|ref|ZP_00069715.1| hypothetical protein [Oenococcus ... 783 0.0
gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetan... 654 0.0
gi|15894383|ref|NP_347732.1| DNA polymerase I, polA [Clostridium... 631 e-179
gi|23022198|ref|ZP_00061820.1| hypothetical protein [Clostridium... 629 e-179
gi|20807355|ref|NP_622526.1| DNA polymerase I - 3'-5' exonucleas... 625 e-178
gi|17978836|gb|AAL47553.1| DNA polymerase [Thermoanaerobacter yo... 625 e-178
gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfr... 620 e-176
gi|23111782|ref|ZP_00097364.1| hypothetical protein [Desulfitoba... 604 e-171
gi|6014999|sp|Q59156|DPO1_ANATH DNA polymerase I (POL I) >gnl|BL... 570 e-161
gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium ros... 565 e-159
gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomic... 563 e-159
gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Ther... 550 e-155
gi|23056384|ref|ZP_00082413.1| hypothetical protein [Geobacter m... 550 e-155
gi|22999922|ref|ZP_00043877.1| hypothetical protein [Magnetococc... 547 e-154
gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodotherm... 540 e-152
gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococc... 540 e-152
gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed ... 537 e-151
gi|4389132|pdb|1XWL| Bacillus Stearothermophilus (Newly Identif... 536 e-151
gi|4389065|pdb|3BDP|A Chain A, Crystal Structure Of Bacillus Dna... 535 e-150
gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp... 533 e-150
gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococc... 528 e-148
gi|15608767|ref|NP_216145.1| polA [Mycobacterium tuberculosis H3... 525 e-147
gi|23027116|ref|ZP_00065579.1| hypothetical protein [Microbulbif... 523 e-147
gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interr... 516 e-145
gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coel... 516 e-145
gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influ... 515 e-144
gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetoba... 510 e-143
gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus... 509 e-142
gi|1097211|prf||2113329A DNA polymerase 508 e-142
gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemol... 508 e-142
gi|1706502|sp|P52028|DPOT_THETH DNA polymerase I, thermostable (... 506 e-142
gi|15602930|ref|NP_246002.1| PolA [Pasteurella multocida] >gnl|B... 506 e-141
gi|32477714|ref|NP_870708.1| DNA polymerase I [Pirellula sp.] >g... 506 e-141
gi|232010|sp|P30313|DPOF_THETH DNA polymerase I, thermostable (T... 505 e-141
gi|2506365|sp|P80194|DPO1_THECA DNA polymerase I, thermostable (... 503 e-141
gi|23469605|ref|ZP_00124939.1| hypothetical protein [Pseudomonas... 498 e-139
gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae] ... 497 e-139
gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syrin... 496 e-139
gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putid... 494 e-138
gi|29655082|ref|NP_820774.1| DNA polymerase I [Coxiella burnetii... 494 e-138
gi|15793464|ref|NP_283286.1| DNA polymerase I [Neisseria meningi... 493 e-138
gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningi... 491 e-137
gi|23104372|ref|ZP_00090838.1| hypothetical protein [Azotobacter... 491 e-137
gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneide... 488 e-136
gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aerug... 485 e-135
gi|16131704|ref|NP_418300.1| DNA polymerase I [Escherichia coli ... 484 e-135
gi|15804448|ref|NP_290488.1| DNA polymerase I, 3' --> 5' polymer... 484 e-135
gi|30064847|ref|NP_839018.1| DNA polymerase I, 3 --> 5 polymeras... 483 e-135
gi|24115152|ref|NP_709662.1| DNA polymerase I, 3' --> 5' polymer... 483 e-135
gi|23125316|ref|ZP_00107254.1| hypothetical protein [Nostoc punc... 481 e-134
gi|16767264|ref|NP_462879.1| DNA polymerase I, 3' --> 5' polymer... 478 e-133
gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes ... 477 e-133
gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enteri... 477 e-133
gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonell... 476 e-133
gi|22986599|ref|ZP_00031693.1| hypothetical protein [Burkholderi... 470 e-131
gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nuc... 460 e-128
gi|14916559|sp|Q9RAA9|DPO1_RICFE DNA polymerase I (POL I) >gnl|B... 459 e-127
gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila cav... 450 e-125
gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium l... 446 e-124
gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococc... 440 e-122
gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridar... 438 e-121
gi|14916560|sp|Q9RLB6|DPO1_RICHE DNA polymerase I (POL I) >gnl|B... 436 e-121
gi|15605221|ref|NP_220007.1| DNA Polymerase I [Chlamydia trachom... 426 e-117
gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis] 424 e-117
gi|15618522|ref|NP_224808.1| DNA Polymerase I [Chlamydophila pne... 423 e-117
gi|33241967|ref|NP_876908.1| DNA-directed DNA polymerase I [Chla... 422 e-116
gi|15791706|ref|NP_281529.1| DNA polymerase I [Campylobacter jej... 402 e-110
gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholder... 389 e-106
gi|22976274|ref|ZP_00022165.1| hypothetical protein [Ralstonia m... 380 e-104
gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 133... 378 e-103
gi|17988108|ref|NP_540742.1| DNA POLYMERASE I [Brucella melitens... 378 e-103
gi|17546949|ref|NP_520351.1| PROBABLE DNA POLYMERASE I PROTEIN [... 377 e-103
gi|23015747|ref|ZP_00055515.1| hypothetical protein [Magnetospir... 371 e-101
gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomon... 370 e-101
gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Comp... 369 e-100
gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragm... 369 e-100
gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large... 369 e-100
gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Comp... 369 e-100
gi|1943520|pdb|1KTQ| Dna Polymerase >gnl|BL_ORD_ID|1251343 gi|6... 369 e-100
gi|1942202|pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I >... 369 e-100
gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium lot... 368 e-100
gi|23059541|ref|ZP_00084500.1| hypothetical protein [Pseudomonas... 367 e-100
gi|32030201|ref|ZP_00133093.1| hypothetical protein [Haemophilus... 363 1e-98
gi|15887465|ref|NP_353146.1| AGR_C_169p [Agrobacterium tumefacie... 360 7e-98
gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex ... 359 1e-97
gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducre... 359 1e-97
gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment)... 359 1e-97
gi|229889|pdb|1DPI| DNA Polymerase I (Klenow Fragment) (E.C.2.7... 358 2e-97
gi|2982102|pdb|1KFS|A Chain A, All-Oxygen Dna Complexed To The 3... 358 2e-97
gi|15963928|ref|NP_384281.1| PROBABLE DNA POLYMERASE I PROTEIN [... 357 5e-97
gi|12229815|sp|Q9S1G2|DPO1_RHILE DNA polymerase I (POL I) >gnl|B... 354 3e-96
gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axono... 353 6e-96
gi|22959123|ref|ZP_00006781.1| hypothetical protein [Rhodobacter... 352 2e-95
gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campe... 351 3e-95
gi|23011486|ref|ZP_00051830.1| hypothetical protein [Magnetospir... 350 7e-95
gi|22970517|ref|ZP_00017587.1| hypothetical protein [Chloroflexu... 350 9e-95
gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium di... 349 1e-94
gi|6015002|sp|O08307|DPO1_CHLAU DNA polymerase I (POL I) >gnl|BL... 347 4e-94
gi|22997220|ref|ZP_00041455.1| hypothetical protein [Xylella fas... 344 3e-93
gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidios... 342 1e-92
gi|22995303|ref|ZP_00039782.1| hypothetical protein [Xylella fas... 342 2e-92
gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidios... 342 2e-92
gi|22961886|ref|ZP_00009492.1| hypothetical protein [Rhodopseudo... 340 9e-92
gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter cresc... 339 1e-91
gi|23133301|ref|ZP_00115075.1| hypothetical protein [Synechococc... 338 3e-91
gi|33240684|ref|NP_875626.1| DNA polymerase I 3'-5' exonuclease ... 338 4e-91
gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema ... 331 4e-89
gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp.... 330 6e-89
gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonucle... 329 1e-88
gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium ja... 328 2e-88
gi|22965813|ref|ZP_00013411.1| hypothetical protein [Rhodospiril... 324 4e-87
gi|23110653|ref|ZP_00096806.1| hypothetical protein [Novosphingo... 306 1e-81
gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I [Lactobaci... 303 6e-81
gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucle... 303 1e-80
gi|32034753|ref|ZP_00134878.1| hypothetical protein [Actinobacil... 290 7e-77
gi|23336564|ref|ZP_00121775.1| hypothetical protein [Bifidobacte... 286 9e-76
gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepa... 278 2e-73
gi|23040910|ref|ZP_00072402.1| hypothetical protein [Trichodesmi... 278 3e-73
gi|15612428|ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylo... 255 2e-66
gi|847765|gb|AAC44593.1| DNA polymerase I 220 1e-55
gi|30387615|ref|NP_084253.1| polymerase (DNA directed), theta [M... 218 3e-55
gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus] 218 4e-55
gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [M... 218 5e-55
gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium lep... 217 6e-55
gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] 217 6e-55
gi|28493899|ref|XP_148122.2| RIKEN cDNA A430110D14 [Mus musculus] 217 6e-55
gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus] 217 7e-55
gi|4105277|gb|AAD02338.1| putative DNA polymerase; POL4P [Homo s... 217 9e-55
gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 CG6019-PA [Dr... 216 2e-54
gi|32698792|ref|NP_861524.1| DNA polymerase POL4P; DNA polymeras... 215 4e-54
gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomy... 214 5e-54
gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens] 213 1e-53
gi|16418479|ref|NP_006587.2| polymerase (DNA directed), theta; p... 206 2e-51
gi|29832769|ref|NP_827403.1| putative DNA polymerase I [Streptom... 206 2e-51
gi|25028011|ref|NP_738065.1| putative DNA polymerase I [Coryneba... 206 2e-51
gi|6226811|sp|O75417|DPOQ_HUMAN DNA polymerase theta (DNA polyme... 201 6e-50
gi|30019729|ref|NP_831360.1| 5'-3' exonuclease [Bacillus cereus ... 196 2e-48
gi|21399498|ref|NP_655483.1| 53EXOc, 5'-3' exonuclease [Bacillus... 194 8e-48
gi|23099156|ref|NP_692622.1| 5'-3' exonuclease [Oceanobacillus i... 193 1e-47
gi|23021107|ref|ZP_00060794.1| hypothetical protein [Clostridium... 192 2e-47
gi|16801060|ref|NP_471328.1| similar to 5'-3' exonuclease [Liste... 190 8e-47
gi|32043063|ref|ZP_00140325.1| hypothetical protein [Pseudomonas... 190 1e-46
gi|16803920|ref|NP_465405.1| similar to 5'-3' exonuclease [Liste... 187 5e-46
gi|16079259|ref|NP_390083.1| similar to 5'-3' exonuclease [Bacil... 187 6e-46
gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease... 186 2e-45
gi|15924430|ref|NP_371964.1| hypothetical protein [Staphylococcu... 186 2e-45
gi|21283058|ref|NP_646146.1| ORFID:MW1329~hypothetical protein, ... 185 2e-45
gi|30685835|ref|NP_188690.2| DNA polymerase -related [Arabidopsi... 185 3e-45
gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium g... 184 9e-45
gi|28572629|ref|NP_789409.1| DNA polymerase I [Tropheryma whippl... 183 1e-44
gi|28493259|ref|NP_787420.1| DNA polymerase I [Tropheryma whippl... 183 1e-44
gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 71... 182 2e-44
gi|31198797|ref|XP_308346.1| ENSANGP00000019077 [Anopheles gambi... 182 3e-44
gi|22330154|ref|NP_175498.2| DNA polymerase A family protein -re... 181 5e-44
gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidop... 181 5e-44
gi|23017878|ref|ZP_00057600.1| hypothetical protein [Thermobifid... 181 6e-44
gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A [Dicty... 181 7e-44
gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like prote... 181 8e-44
gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis... 180 8e-44
gi|23336563|ref|ZP_00121774.1| hypothetical protein [Bifidobacte... 180 1e-43
gi|461960|sp|P30314|DPOL_BPSP1 DNA polymerase 177 9e-43
gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspi... 177 1e-42
gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania m... 176 1e-42
gi|3913510|sp|O52225|DPO1_THEFI DNA polymerase I, thermostable (... 176 1e-42
gi|11994141|dbj|BAB01162.1| contains similarity to DNA polymeras... 176 2e-42
gi|93621|pir||JC1269 DNA-directed DNA polymerase (EC 2.7.7.7) - ... 175 3e-42
gi|27468048|ref|NP_764685.1| putative 5'-3' exonuclease [Staphyl... 174 5e-42
gi|27887284|gb|EAA24381.1| DNA polymerase I [Fusobacterium nucle... 174 9e-42
gi|22969182|ref|ZP_00016721.1| hypothetical protein [Rhodospiril... 173 1e-41
gi|22974373|ref|ZP_00020643.1| hypothetical protein [Chloroflexu... 173 1e-41
gi|16120370|ref|NP_403683.1| DNA polymerase I [Yersinia pestis] ... 172 3e-41
gi|1942938|pdb|1TAQ| Structure Of Taq Dna Polymerase 171 4e-41
gi|1084022|pir||JX0359 DNA-directed DNA polymerase (EC 2.7.7.7) ... 171 5e-41
gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus] 171 6e-41
gi|2098289|pdb|1TAU|A Chain A, Structure Of Dna Polymerase 170 8e-41
gi|25405411|pir||D96545 probable DNA polymerase A family protein... 170 8e-41
gi|118828|sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable (T... 170 9e-41
gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidu... 170 1e-40
gi|23466822|ref|ZP_00122409.1| hypothetical protein [Haemophilus... 168 3e-40
gi|17555440|ref|NP_498250.1| dna polymerase i (3G882) [Caenorhab... 167 1e-39
gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii] 166 1e-39
gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica... 166 2e-39
gi|15893129|ref|NP_360843.1| DNA polymerase I (POL I) [EC:2.7.7.... 166 2e-39
gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanen... 166 2e-39
gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinoc... 164 5e-39
gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa] 164 5e-39
gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides theta... 164 7e-39
gi|538888|pir||A40597 DNA-directed DNA polymerase (EC 2.7.7.7) I... 164 7e-39
gi|15233883|ref|NP_194996.1| DNA polymerase family protein [Arab... 164 9e-39
gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicep... 162 2e-38
gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex ae... 162 2e-38
gi|21672683|ref|NP_660750.1| DNA polymerase I 3'-5' exo domain [... 162 4e-38
gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacteriophage phB... 160 1e-37
gi|23138023|ref|ZP_00119726.1| hypothetical protein [Cytophaga h... 160 1e-37
gi|13508118|ref|NP_110067.1| 5'-3' exonuclease (complete) [Mycop... 160 1e-37
gi|15606735|ref|NP_214115.1| DNA polymerase I 3'-5' exo domain [... 159 3e-37
gi|23112285|ref|ZP_00097788.1| hypothetical protein [Desulfitoba... 159 3e-37
gi|23007000|ref|ZP_00049062.1| hypothetical protein [Magnetospir... 157 6e-37
gi|15617030|ref|NP_240243.1| DNA polymerase I [Buchnera aphidico... 157 7e-37
gi|27666712|ref|XP_221423.1| similar to polymerase (DNA directed... 156 2e-36
gi|27904863|ref|NP_777989.1| putative 5'-3' exonuclease [Buchner... 155 3e-36
gi|15604609|ref|NP_221127.1| DNA POLYMERASE I (polA) [Rickettsia... 155 4e-36
gi|26553652|ref|NP_757586.1| DNA polymerase I: 5'-3' exonuclease... 153 1e-35
gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi] 149 2e-34
gi|23131695|ref|ZP_00113480.1| hypothetical protein [Prochloroco... 149 3e-34
gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex ... 148 4e-34
gi|28828242|gb|AAO50919.1| similar to Mus musculus (Mouse). DNA ... 148 5e-34
gi|32492179|emb|CAE04166.1| OSJNBb0034I13.15 [Oryza sativa (japo... 147 1e-33
gi|23122969|ref|ZP_00105104.1| hypothetical protein [Prochloroco... 146 1e-33
gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nit... 144 8e-33
gi|13357976|ref|NP_078250.1| DNA polymerase I: 5'-3' exonuclease... 144 1e-32
gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] 143 2e-32
gi|118855|sp|P19822|DPOL_BPT5 DNA polymerase >gnl|BL_ORD_ID|9940... 141 6e-32
gi|15614743|ref|NP_243046.1| 5'-3' exonuclease [Bacillus halodur... 141 7e-32
gi|24421685|gb|AAN60992.1| Unknown protein [Oryza sativa (japoni... 140 1e-31
gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia b... 139 2e-31
gi|21230313|ref|NP_636230.1| exodeoxyribonuclease IX [Xanthomona... 139 2e-31
gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochm... 137 7e-31
gi|31544437|ref|NP_853015.1| Exo [Mycoplasma gallisepticum R] >g... 137 7e-31
gi|12045117|ref|NP_072928.1| 5'-3' exonuclease, putative [Mycopl... 137 1e-30
gi|23473464|ref|ZP_00128760.1| hypothetical protein [Desulfovibr... 137 1e-30
gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli] 135 2e-30
gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli] 135 3e-30
gi|22981674|ref|ZP_00027094.1| hypothetical protein [Ralstonia m... 135 4e-30
gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli] >... 134 5e-30
gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli] >... 134 5e-30
gi|29833256|ref|NP_827890.1| putative 5'-3' exonuclease [Strepto... 134 6e-30
gi|23509333|ref|NP_702000.1| POM1, putative [Plasmodium falcipar... 134 8e-30
gi|21241682|ref|NP_641264.1| exodeoxyribonuclease IX [Xanthomona... 133 1e-29
gi|32491005|ref|NP_871259.1| polA [Wigglesworthia glossinidia en... 132 3e-29
gi|15829191|ref|NP_326551.1| DNA POLYMERASE I (POL I) [Mycoplasm... 132 3e-29
gi|21220118|ref|NP_625897.1| putative 5'-3' exonuclease [Strepto... 128 4e-28
gi|29566063|ref|NP_817633.1| gp44 [Mycobacteriophage Bxz2] >gnl|... 127 8e-28
gi|23028372|ref|ZP_00066777.1| hypothetical protein [Microbulbif... 126 2e-27
gi|12043539|emb|CAC19788.1| DNA polymerase 1 [Burkholderia cepacia] 123 1e-26
gi|20095249|gb|AAL85287.2|AF465603_1 PH102-786 [Vibrio harveyi b... 123 1e-26
gi|9630428|ref|NP_046860.1| DNA polymerase; gp44 [Mycobacterioph... 122 3e-26
gi|23489855|gb|EAA21765.1| unnamed protein product [Plasmodium y... 115 3e-24
gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobact... 114 7e-24
gi|9789856|sp|P56105|DPO1_HELPY DNA polymerase I (POL I) 114 7e-24
gi|23487389|gb|EAA21043.1| 5'-3' exonuclease, N-terminal resolva... 112 2e-23
gi|15609227|ref|NP_216606.1| hypothetical protein Rv2090 [Mycoba... 112 2e-23
gi|31793273|ref|NP_855766.1| 5'-3' exonuclease [Mycobacterium bo... 111 6e-23
gi|15841581|ref|NP_336618.1| 5'-3'-exonuclease, putative [Mycoba... 111 6e-23
gi|17375479|sp|Q10699|EX53_MYCTU Probable 5'-3' exonuclease 111 6e-23
gi|28395579|gb|AAO39143.1| exodeoxyribonuclease IX-like protein ... 110 1e-22
gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacter... 108 5e-22
gi|16121332|ref|NP_404645.1| exodeoxyribonuclease IX [Yersinia p... 107 7e-22
gi|15803320|ref|NP_289353.1| 5'-3' exonuclease [Escherichia coli... 107 1e-21
gi|2507020|sp|P38506|EX9_ECOLI Exodeoxyribonuclease IX (Exonucle... 107 1e-21
gi|33347700|ref|NP_417278.2| Exo [Escherichia coli K12] 107 1e-21
gi|26249203|ref|NP_755243.1| Exodeoxyribonuclease IX [Escherichi... 106 2e-21
gi|28829963|gb|AAO52453.1| similar to Thermotoga maritima. DNA-d... 105 3e-21
gi|24114083|ref|NP_708593.1| 5'-3' exonuclease [Shigella flexner... 104 8e-21
gi|16761750|ref|NP_457367.1| 5'-3' exonuclease [Salmonella enter... 101 6e-20
gi|16766277|ref|NP_461892.1| exonuclease IX, 5'-3' exonuclease [... 101 7e-20
gi|23612331|ref|NP_703911.1| DNA polymerase 1, putative [Plasmod... 100 1e-19
gi|9631174|ref|NP_047956.1| gp11 protein [Bacteriophage phi-C31]... 99 3e-19
gi|481606|pir||S38923 hypothetical protein 11 - phage phi-C31 >g... 99 3e-19
gi|12657895|ref|NP_075308.1| gp41 [mycobacteriophage Bxb1] >gnl|... 99 4e-19
gi|24373120|ref|NP_717163.1| exodeoxyribonuclease IX [Shewanella... 99 4e-19
gi|29366786|ref|NP_813726.1| gp11 [Bacteriophage phi-BT1] >gnl|B... 94 1e-17
gi|28897471|ref|NP_797076.1| exodeoxyribonuclease IX [Vibrio par... 90 2e-16
gi|15640914|ref|NP_230545.1| exodeoxyribonuclease IX [Vibrio cho... 90 2e-16
gi|9964623|ref|NP_064753.1| RP DNA pol [Roseophage SIO1] >gnl|BL... 83 2e-14
gi|17570813|ref|NP_523322.1| gene 5B protein [Bacteriophage T3] ... 80 1e-13
gi|6537229|gb|AAF15571.1|AF179378_2 exonuclease homolog [Mycopla... 79 3e-13
gi|31795439|ref|NP_857892.1| unknown [Yersinia pestis KIM] >gnl|... 79 3e-13
gi|15231120|ref|NP_190773.1| hypothetical protein [Arabidopsis t... 79 4e-13
gi|9627454|ref|NP_041982.1| gene 5, DNA polymerase [Enterobacter... 79 4e-13
gi|2982125|pdb|1T7P|A Chain A, T7 Dna Polymerase Complexed To Dn... 79 4e-13
gi|16082842|ref|NP_395396.1| putative exonuclease [Yersinia pest... 79 4e-13
gi|30387474|ref|NP_848283.1| DNA polymerase [Yersinia pestis pha... 79 5e-13
gi|17570811|ref|NP_523320.1| DNA polymerase [Bacteriophage T3] >... 79 5e-13
gi|18466675|ref|NP_569482.1| putative exonuclease [Salmonella en... 78 7e-13
gi|27476023|ref|NP_775225.1| DNA polymerase II [Pseudomonas aeru... 77 2e-12
gi|31795225|ref|NP_857684.1| DNA polymerase I [Yersinia pestis K... 75 5e-12
gi|9909718|emb|CAC04270.1| possible DNA polymerase A-family prot... 74 1e-11
gi|6562656|emb|CAB62812.1| kinetoplast structure-specific endonu... 73 3e-11
gi|21929665|gb|AAM81965.1|AF445379_1 DNA polymerase I-like prote... 72 3e-11
gi|27363779|ref|NP_759307.1| 5'-3' exonuclease [Vibrio vulnificu... 72 4e-11
gi|19386844|dbj|BAB86222.1| putative DNA polymerase I [Oryza sat... 70 1e-10
gi|29566249|ref|NP_817817.1| gp56 [Mycobacteriophage Rosebush] >... 70 2e-10
gi|9634020|ref|NP_052094.1| 5B protein [Bacteriophage phiYeO3-12... 70 2e-10
gi|7940267|emb|CAB91834.1| possible DNA polymerase I-related pro... 70 2e-10
gi|119684|sp|P06229|EXO5_BPT5 Exodeoxyribonuclease (5'exonucleas... 69 3e-10
gi|33300830|ref|NP_877458.1| putative DNA directed DNA polymeras... 69 4e-10
gi|9634019|ref|NP_052093.1| DNA polymerase [Bacteriophage phiYeO... 69 5e-10
gi|29831179|ref|NP_825813.1| putative DNA polymerase I [Streptom... 68 8e-10
gi|5616166|gb|AAD45654.1|AF124228_1 kinetoplast structure-specif... 67 1e-09
gi|14719815|pdb|1XO1|A Chain A, T5 5'-Exonuclease Mutant K83a >g... 67 1e-09
gi|23593272|ref|NP_472964.2| 5'-3' exonuclease, N-terminal resol... 67 1e-09
gi|13751093|emb|CAC37107.1| possible DNA polymerase I, thermosta... 67 2e-09
gi|7494168|pir||C71621 exonuclease domain (5'-3') protein PFB018... 67 2e-09
gi|18640489|ref|NP_570330.1| DNA polymerase [Cyanophage P60] >gn... 65 5e-09
gi|32128451|ref|NP_858986.1| 38L [Xanthomonas oryzae bacteriopha... 64 1e-08
gi|2392326|pdb|1EXN|A Chain A, T5 5'-Exonuclease >gnl|BL_ORD_ID|... 62 5e-08
gi|15218609|ref|NP_174698.1| DNA polymerase type I -related [Ara... 61 8e-08
gi|21234370|ref|NP_640280.1| DNA polymerase [Vibriophage VpV262]... 61 8e-08
gi|21929663|gb|AAM81964.1|AF445378_1 DNA polymerase I-like prote... 61 1e-07
gi|23003016|ref|ZP_00046686.1| hypothetical protein [Lactobacill... 60 2e-07
gi|32141203|ref|NP_733604.1| putative DNA polymerase I [Streptom... 59 3e-07
gi|30044002|ref|NP_835599.1| similar to DNA polymerase I [Bacter... 57 1e-06
gi|7480628|pir||T36200 probable DNA polymerase I - Streptomyces ... 57 1e-06
gi|31711656|ref|NP_853574.1| gp14 [Enterobacteria phage SP6] >gn... 54 1e-05
gi|29366719|ref|NP_813764.1| putative DNA polymerase [Pseudomona... 53 3e-05
>gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus
agalactiae 2603V/R]
gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus
agalactiae NEM316]
gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I
[Streptococcus agalactiae 2603V/R]
gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus
agalactiae NEM316]
Length = 880
Score = 1699 bits (4400), Expect = 0.0
Identities = 880/880 (100%), Positives = 880/880 (100%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI
Sbjct: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII
Sbjct: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT
Sbjct: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN
Sbjct: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ
Sbjct: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
Query: 301 EDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
EDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE
Sbjct: 301 EDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
Query: 361 ALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYT 420
ALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYT
Sbjct: 361 ALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYT 420
Query: 421 NLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEME 480
NLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEME
Sbjct: 421 NLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEME 480
Query: 481 QPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLL 540
QPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLL
Sbjct: 481 QPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLL 540
Query: 541 FETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL 600
FETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL
Sbjct: 541 FETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL 600
Query: 601 EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQI 660
EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQI
Sbjct: 601 EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQI 660
Query: 661 ELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGI 720
ELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGI
Sbjct: 661 ELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGI 720
Query: 721 SDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDI 780
SDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDI
Sbjct: 721 SDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDI 780
Query: 781 NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEV 840
NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEV
Sbjct: 781 NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEV 840
Query: 841 PNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
PNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK
Sbjct: 841 PNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
>gi|21909681|ref|NP_663949.1| DNA-directed DNA polymerase I
[Streptococcus pyogenes MGAS315]
gi|28895061|ref|NP_801411.1| putative putative DNA-directed DNA
polymerase I [Streptococcus pyogenes SSI-1]
gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I
[Streptococcus pyogenes MGAS315]
gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA
polymerase I [Streptococcus pyogenes SSI-1]
Length = 880
Score = 1323 bits (3423), Expect = 0.0
Identities = 667/881 (75%), Positives = 763/881 (85%), Gaps = 2/881 (0%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M NKNKLLLIDGSSVAFRAFFALYNQIDRFKN+SGLHTNAIYGFHLML+H++ RVQP+H+
Sbjct: 1 MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQPTHV 60
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
LVAFDAGKTTFRTEMYADYK GRAKTPDEFREQFPYIR+ L LGI +YELEHYEADDII
Sbjct: 61 LVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEADDII 120
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTL K AE + FD+T+VSGDKDLIQLTD NTVVEISKKGVAEFEEFTPAYLMEKMG+T
Sbjct: 121 GTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMGLT 180
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P+QFIDLKALMGDKSDNIPGVTKIGEKTGLKLL ++GSLEGIYE+I+ K SKMKENLIN
Sbjct: 181 PNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHKFGSLEGIYEHIDGFKASKMKENLIN 240
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
D++QAFLSKTLATIN ASPITIGL+DI+Y+GP D+ +LSQFYDEMDF Q K L + Q
Sbjct: 241 DRDQAFLSKTLATINTASPITIGLDDIVYNGP-DVASLSQFYDEMDFVQLKKGLASQMPQ 299
Query: 301 EDF-EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQ 359
E + + EV + ++FS D +YFE L DNYH E +IG AWG+ + IYA++++SLL
Sbjct: 300 EPVAAISYQEVTNVSADLFSAEDIFYFETLRDNYHREAIIGFAWGHGEQIYASTDLSLLA 359
Query: 360 EALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLY 419
FK+ KPI TYDFKRSKVLL+ I+L P++D RLA YLLST EDN +STIAR++
Sbjct: 360 TDSFKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIF 419
Query: 420 TNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEM 479
T++ L+ DD VYGKGAKRA+P+K LEHLA+KVKVL+DS++ ++ +L A+EQ +L +
Sbjct: 420 TDISLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNI 479
Query: 480 EQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKL 539
E PLANVLAKMEI GIKV + TL +MA +N+ +IE LTQEIY++AGQEFNINSPKQLG +
Sbjct: 480 ELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSI 539
Query: 540 LFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI 599
LFE + LP+EMTKKTKTGYSTAVDVLERLAPI+P+V KIL+YRQITKLQSTY+IGLQDYI
Sbjct: 540 LFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI 599
Query: 600 LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQ 659
L DGKIHTRYVQDLTQTGRLSS DPNLQNIP+RLEQGRLIRKAF PS ++AVLLSSDYSQ
Sbjct: 600 LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQ 659
Query: 660 IELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG 719
IELRVLAHIS DEHLIAAF EGADIHTSTAMRVFGI+K +VT NDRRNAKAVNFGIVYG
Sbjct: 660 IELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYG 719
Query: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPD 779
ISDFGLS+NLGI RK AK YIDTYFERYPGIK YME VVREAKDKGYVETLF RRR LPD
Sbjct: 720 ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPD 779
Query: 780 INSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLE 839
INSRNFN+R FAERTAINSPIQGSAADILKIAMINLD+ L GG+++KMLLQVHDEIVLE
Sbjct: 780 INSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLE 839
Query: 840 VPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VPN+E+ AI++LV TME+A+ L+VPL DE+ G++WYEAK
Sbjct: 840 VPNDELTAIKKLVKDTMEAAVDLAVPLCVDESTGQSWYEAK 880
>gi|19745349|ref|NP_606485.1| DNA-directed DNA polymerase I
[Streptococcus pyogenes MGAS8232]
gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I
[Streptococcus pyogenes MGAS8232]
Length = 880
Score = 1322 bits (3422), Expect = 0.0
Identities = 666/881 (75%), Positives = 762/881 (85%), Gaps = 2/881 (0%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M NKNKLLLIDGSSVAFRAFFALYNQIDRFKN+SGLHTNAIYGFHLML+H++ RV+P+H+
Sbjct: 1 MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVRPTHV 60
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
LVAFDAGKTTFRTEMYADYK GRAKTPDEFREQFPYIR+ L LGI +YELEHYEADDII
Sbjct: 61 LVAFDAGKTTFRTEMYADYKAGRAKTPDEFREQFPYIREMLTALGIAYYELEHYEADDII 120
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTL K AE + FD+T+VSGDKDLIQLTD NTVVEISKKGVAEFEEFTPAYLMEKMG+T
Sbjct: 121 GTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMGLT 180
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P+QFIDLKALMGDKSDNIPGVTKIGEKTGLKLL E+GSLEGIYE+I+ K SKMKENLIN
Sbjct: 181 PNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKASKMKENLIN 240
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
D++QAFLSKTLATIN ASPITIGL+DI+Y+GP D+ +LSQFYDEMDF Q K L + Q
Sbjct: 241 DRDQAFLSKTLATINTASPITIGLDDIVYNGP-DVASLSQFYDEMDFVQLKKGLASQMPQ 299
Query: 301 EDF-EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQ 359
E + + EV + ++FS D +YFE L DNYH E +IG AWG+ + IYA++++SLL
Sbjct: 300 EPVAAISYQEVTNVSADLFSAEDIFYFETLRDNYHREAIIGFAWGHGEQIYASTDLSLLA 359
Query: 360 EALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLY 419
FK+ KPI TYDFKRSKVLL+ I+L P++D RLA YLLST EDN +STIAR++
Sbjct: 360 TDSFKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIF 419
Query: 420 TNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEM 479
T++ L+ DD VYGKGAKRA+P+K LEHLA+KVKVL+DS++ ++ +L A+EQ +L +
Sbjct: 420 TDISLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNI 479
Query: 480 EQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKL 539
E PLANVLAKMEI GIKV + TL +MA +N+ +IE LTQEIY++AGQEFNINSPKQLG +
Sbjct: 480 ELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSI 539
Query: 540 LFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI 599
LFE + LP+EMTKKTKTGYSTAVDVLERLAPI+P+V KIL+YRQITKLQSTY+IGLQDYI
Sbjct: 540 LFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI 599
Query: 600 LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQ 659
L DGKIHTRYVQDLTQTGRLSS DPNLQNIP+RLEQGRLIRKAF PS ++AVLL SDYSQ
Sbjct: 600 LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLGSDYSQ 659
Query: 660 IELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG 719
IELRVLAHIS DEHLIAAF EGADIHTSTAMRVFGI+K +VT NDRRNAKAVNFGIVYG
Sbjct: 660 IELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYG 719
Query: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPD 779
ISDFGLS+NLGI RK AK YIDTYFERYPGIK YME VVREAKDKGYVETLF RRR LPD
Sbjct: 720 ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPD 779
Query: 780 INSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLE 839
INSRNFN+R FAERTAINSPIQGSAADILKIAMINLD+ L GG+++KMLLQVHDEIVLE
Sbjct: 780 INSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLE 839
Query: 840 VPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VPN+E+ AI++LV TME+A+ L+VPL DE+ G++WYEAK
Sbjct: 840 VPNDELTAIKKLVKDTMEAAVDLAVPLCVDESTGQSWYEAK 880
>gi|24378800|ref|NP_720755.1| DNA polymerase I (POL I)
[Streptococcus mutans UA159]
gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I)
[Streptococcus mutans UA159]
Length = 878
Score = 1322 bits (3421), Expect = 0.0
Identities = 674/880 (76%), Positives = 770/880 (86%), Gaps = 2/880 (0%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MTNK KLLLIDGSSVA+RAFFALYNQIDRFKN +GLHTNAIYGFHLML+H++ RV+P+H+
Sbjct: 1 MTNKKKLLLIDGSSVAYRAFFALYNQIDRFKNPAGLHTNAIYGFHLMLDHMMKRVEPTHV 60
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
LVAFDAGKTTFRTEM+ADYK GRAKTP+EFREQ PYIR+ L LG+ +Y+LE+YEADDII
Sbjct: 61 LVAFDAGKTTFRTEMFADYKAGRAKTPEEFREQLPYIREMLTALGVSYYDLENYEADDII 120
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTL K AE +E +D+T+VSGDKDLIQLTD+NT VEISKKGVAEFEEFTP YLMEKMG+T
Sbjct: 121 GTLDKLAENEDE-YDVTIVSGDKDLIQLTDSNTTVEISKKGVAEFEEFTPDYLMEKMGLT 179
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P QFIDLKALMGDKSDNIPGVTKIGEKTGLKLL E+GSLE IYE+I++ K +KMKENLIN
Sbjct: 180 PKQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEHGSLEAIYEHIDSFKTTKMKENLIN 239
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
DKE+AFLSKTLATI+ +PITI L+DI YSGPQ + AL++FYDEMDF+QF++ L
Sbjct: 240 DKEKAFLSKTLATIDTQAPITITLDDIDYSGPQ-LDALAKFYDEMDFRQFRSQLDSSPKT 298
Query: 301 EDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
E+FEV +TEV +LK +MF+ + F+YFE+L DNYH +++IG+AWG+ IYAT++ SLL
Sbjct: 299 ENFEVSYTEVTELKPDMFAPDQFFYFEILNDNYHTQEMIGLAWGDDQAIYATTDTSLLTH 358
Query: 361 ALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYT 420
LFK+ALSKPIKTYDFKR KVLL+ IDLP +FD+RLAKYLLST E+N +STIARLYT
Sbjct: 359 DLFKEALSKPIKTYDFKRGKVLLSHLGIDLPTASFDSRLAKYLLSTVENNNISTIARLYT 418
Query: 421 NLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEME 480
+LPL+TDD VYGKGAKRAIPEK L HLAKK+ VL+ SE + Q+L AN+Q +LLFEME
Sbjct: 419 DLPLETDDDVYGKGAKRAIPEKNVLLSHLAKKISVLLASEEPMRQKLSANDQLDLLFEME 478
Query: 481 QPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLL 540
PLANVLAKMEI GI V+K TL +M N+ ++ LTQEIY+LAG+ FNINSPKQLG +L
Sbjct: 479 LPLANVLAKMEIAGISVRKETLQDMERANEIELQALTQEIYDLAGEAFNINSPKQLGVIL 538
Query: 541 FETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL 600
FE LGLP+ TKKTKTGYSTAVDVLERLA SP+V KILEYRQI KLQSTYIIGLQD I
Sbjct: 539 FEKLGLPLSATKKTKTGYSTAVDVLERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSIS 598
Query: 601 EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQI 660
DGKIHTRY+QDLTQTGRLSS DPNLQNIPVRLEQGRLIRKAFVP +VLLSSDYSQI
Sbjct: 599 FDGKIHTRYLQDLTQTGRLSSVDPNLQNIPVRLEQGRLIRKAFVPEWKESVLLSSDYSQI 658
Query: 661 ELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGI 720
ELRVLAHIS DEHLIAAFKEGADIHTSTAMRVFGIE+PE+VTPNDRRNAKAVNFG+VYGI
Sbjct: 659 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYGI 718
Query: 721 SDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDI 780
SDFGL++NLGI RK AK YI+TYFERYPGIKNYM+ VVREA+DKGYVETLFHRRR LPDI
Sbjct: 719 SDFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPDI 778
Query: 781 NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEV 840
NSRNFNIR FAERTAINSPIQGSAADILK+AMI+LD+ L KG Y+S+MLLQVHDEIVLEV
Sbjct: 779 NSRNFNIRSFAERTAINSPIQGSAADILKVAMIHLDQALKKGDYQSRMLLQVHDEIVLEV 838
Query: 841 PNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
PN E+ AI++LV +TMESAI LSVPL+ADENAG+TWYEAK
Sbjct: 839 PNAELEAIQKLVKETMESAIELSVPLVADENAGQTWYEAK 878
>gi|15674390|ref|NP_268564.1| DNA-directed DNA polymerase I
[Streptococcus pyogenes]
gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I
[Streptococcus pyogenes M1 GAS]
Length = 880
Score = 1319 bits (3414), Expect = 0.0
Identities = 665/881 (75%), Positives = 761/881 (85%), Gaps = 2/881 (0%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M NKNKLLLIDGSSVAFRAFFALYNQIDRFKN+SGLHTNAIYGFHLML+H++ RVQP+H+
Sbjct: 1 MENKNKLLLIDGSSVAFRAFFALYNQIDRFKNHSGLHTNAIYGFHLMLDHMMKRVQPTHV 60
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
LVAFDAGKTTFRTEMYADYK GRAKTP+EFREQFPYIR+ L LGI +YELEHYEADDII
Sbjct: 61 LVAFDAGKTTFRTEMYADYKAGRAKTPEEFREQFPYIREMLTALGIAYYELEHYEADDII 120
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTL K AE + FD+T+VSGDKDLIQLTD NTVVEISKKGVAEFEEFTPAYLMEKMG+T
Sbjct: 121 GTLDKMAERTEVPFDVTIVSGDKDLIQLTDENTVVEISKKGVAEFEEFTPAYLMEKMGLT 180
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P+QFIDLKALMGDKSDNIPGVTKIGEKTGLKLL E+GSLEGIYE+I+ K SKMKENLIN
Sbjct: 181 PNQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLHEFGSLEGIYEHIDGFKTSKMKENLIN 240
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
D++QAFLSKTLATIN ASPITIGL+DI+Y+GP D+ +LSQFYDEMDF Q K L + Q
Sbjct: 241 DRDQAFLSKTLATINTASPITIGLDDIVYNGP-DVASLSQFYDEMDFVQLKKGLASQMPQ 299
Query: 301 EDFEV-DFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQ 359
E V + EV + ++FS D +YFE L DNYH E +IG AWG+ + IYA++++ LL
Sbjct: 300 EPVAVISYQEVTNVSADLFSAEDIFYFETLRDNYHREAIIGFAWGHGEQIYASTDLGLLA 359
Query: 360 EALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLY 419
FK+ KPI TYDFKRSKVLL+ I+L P++D RLA YLLST EDN +STIAR++
Sbjct: 360 TDSFKQVFQKPIATYDFKRSKVLLSHLGIELVAPSYDARLANYLLSTVEDNELSTIARIF 419
Query: 420 TNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEM 479
T++ L+ DD VYGKGAKRA+P+K LEHLA+KVKVL+DS++ ++ +L A+EQ +L +
Sbjct: 420 TDISLEEDDTVYGKGAKRAVPDKDVLLEHLARKVKVLLDSKSQMLDKLTAHEQLDLYQNI 479
Query: 480 EQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKL 539
E PLANVLAKMEI GIKV + TL +MA +N+ +IE LTQEIY++AGQEFNINSPKQLG +
Sbjct: 480 ELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEFNINSPKQLGSI 539
Query: 540 LFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI 599
LFE + LP+EMTKKTKTGYSTAV+VLERLAPI+P+V KIL+YRQITKLQSTY+IGLQDYI
Sbjct: 540 LFEKMQLPLEMTKKTKTGYSTAVNVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI 599
Query: 600 LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQ 659
L DGKIHTRYVQDLTQTGRLSS DPNLQNIP+RLEQGRLIRKAF PS ++AVLLSSDYSQ
Sbjct: 600 LADGKIHTRYVQDLTQTGRLSSVDPNLQNIPIRLEQGRLIRKAFTPSHEDAVLLSSDYSQ 659
Query: 660 IELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG 719
IELRVLAHIS DEHLIAAF EGADIHTSTAMRVFGI++ +VT NDRRNAKAVNFGIVYG
Sbjct: 660 IELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDRAADVTANDRRNAKAVNFGIVYG 719
Query: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPD 779
ISDFGLS+NLGI RK AK YIDTYFERYPGIK YME VVREAKDKGYVETLF RRR LPD
Sbjct: 720 ISDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPD 779
Query: 780 INSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLE 839
INSRNFN+R FAERTAINSPIQGSAADILKIAMINLD+ L GG+++KMLLQVHDEIVLE
Sbjct: 780 INSRNFNVRSFAERTAINSPIQGSAADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLE 839
Query: 840 VPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VPN+E+ AI++LV TME+A+ L+VPL DE+ G +WYEAK
Sbjct: 840 VPNDELTAIKKLVKDTMEAAVDLAVPLCVDESTGHSWYEAK 880
>gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus
pneumoniae R6]
gi|27735185|sp|P59200|DPO1_STRR6 DNA polymerase I (POL I)
gi|25288534|pir||H97875 DNA-directed DNA polymerase (EC 2.7.7.7) I
[imported] - Streptococcus pneumoniae (strain R6)
gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus
pneumoniae R6]
Length = 877
Score = 1278 bits (3308), Expect = 0.0
Identities = 656/879 (74%), Positives = 749/879 (84%), Gaps = 4/879 (0%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILV 62
+K KLLLIDGSSVAFRAFFALY Q+DRFKN +GLHTNAIYGF LML+H+L RV+PSHILV
Sbjct: 2 DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVEPSHILV 61
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFP+IR+ LD +GI+HYEL YEADDIIGT
Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGT 121
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
L K AE + FDIT+VSGDKDLIQLTD +TVVEISKKGVAEFE FTP YLME+MG+TP+
Sbjct: 122 LDKLAE--QDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPA 179
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
QFIDLKALMGDKSDNIPGVTK+GEKTG+KLL E+GSLEGIYENI+ MK SKMKENLINDK
Sbjct: 180 QFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDK 239
Query: 243 EQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQED 302
EQAFLSKTLATI+ +PI IGLED++YSGP D++ L +FYDEM FKQ K AL ++
Sbjct: 240 EQAFLSKTLATIDTKAPIAIGLEDLVYSGP-DVENLGKFYDEMGFKQLKQALNMSSADVA 298
Query: 303 FEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEAL 362
+DFT V+Q+ +M S+ ++FE+ G+NYH ++L+G AW D +YAT + LLQ+ +
Sbjct: 299 EGLDFTIVDQISQDMLSEESIFHFELFGENYHTDNLVGFAWSCGDQLYATDKLELLQDPI 358
Query: 363 FKKALSK-PIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421
FK L K ++ YDFK+ KVLL RF +DL PAFD RLAKYLLST EDN ++TIA LY
Sbjct: 359 FKDFLEKTSLRVYDFKKVKVLLQRFGVDLQAPAFDIRLAKYLLSTVEDNEIATIASLYGQ 418
Query: 422 LPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQ 481
L D+ YGKG K+AIPE+ +FLEHLA K+ VLV++E ++++L N Q ELL++MEQ
Sbjct: 419 TYLVDDETFYGKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQ 478
Query: 482 PLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLF 541
PLA VLAKMEI GI VKK TL EM EN+ VIE LTQEIYELAG+EFN+NSPKQLG LLF
Sbjct: 479 PLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLF 538
Query: 542 ETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILE 601
E LGLP+E TKKTKTGYSTAVDVLERLAPI+P+V KIL+YRQI K+QSTY+IGLQD+IL
Sbjct: 539 EKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILA 598
Query: 602 DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIE 661
DGKIHTRYVQDLTQTGRLSS DPNLQNIP RLEQGRLIRKAFVP +++VLLSSDYSQIE
Sbjct: 599 DGKIHTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIE 658
Query: 662 LRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS 721
LRVLAHISKDEHLI AF+EGADIHTSTAMRVFGIE+P+NVT NDRRNAKAVNFG+VYGIS
Sbjct: 659 LRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGIS 718
Query: 722 DFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDIN 781
DFGLS+NLGI RK AK YIDTYFER+PGIKNYM+ VVREA+DKGYVETLF RRR LPDIN
Sbjct: 719 DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDIN 778
Query: 782 SRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841
SRNFNIR FAERTAINSPIQGSAADILKIAMI LD+ L GGY++KMLLQVHDEIVLEVP
Sbjct: 779 SRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVP 838
Query: 842 NEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
E+ +++LV +TME AI LSVPLIADEN G TWYEAK
Sbjct: 839 KSELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877
>gi|98023|pir||A32949 DNA-directed DNA polymerase (EC 2.7.7.7) -
Streptococcus pneumoniae
gi|153765|gb|AAA26954.1| DNA polymerase I
Length = 877
Score = 1276 bits (3301), Expect = 0.0
Identities = 655/879 (74%), Positives = 748/879 (84%), Gaps = 4/879 (0%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILV 62
+K KLLLIDGSSVAFRAFFALY Q+DRFKN +GLHTNAIYGF LML+H+L RV+PSHILV
Sbjct: 2 DKKKLLLIDGSSVAFRAFFALYQQLDRFKNAAGLHTNAIYGFQLMLSHLLERVEPSHILV 61
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFP+IR+ LD +GI+HYEL YEADDIIGT
Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYELAQYEADDIIGT 121
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
L K AE + FDIT+VSGDKDLIQLTD +TVVEISKKGVAEFE FTP YLME+MG+TP+
Sbjct: 122 LDKLAE--QDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPA 179
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
QFIDLKALMGDKSDNIPGVTK+GEKTG+KLL E+GSLEGIYENI+ MK SKMKENLINDK
Sbjct: 180 QFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDK 239
Query: 243 EQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQED 302
EQAFLSKTLATI+ +PI IGLED++YSGP D++ L +FYDEM FKQ K AL ++
Sbjct: 240 EQAFLSKTLATIDTKAPIAIGLEDLVYSGP-DVENLGKFYDEMGFKQLKQALNMSSADVA 298
Query: 303 FEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEAL 362
+DFT V+Q+ +M S+ ++FE+ G+NYH ++L+G AW D +YAT + LLQ+ +
Sbjct: 299 EGLDFTIVDQISQDMLSEESIFHFELFGENYHTDNLVGFAWSCGDQLYATDKLELLQDPI 358
Query: 363 FKKALSK-PIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421
FK L K ++ YDFK+ KVLL RF +DL PAFD RLAKYLLST EDN ++TIA LY
Sbjct: 359 FKDFLEKTSLRVYDFKKVKVLLQRFGVDLQAPAFDIRLAKYLLSTVEDNEIATIASLYGQ 418
Query: 422 LPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQ 481
L D+ YGKG K+AIPE+ +FLEHLA K+ VLV++E ++++L N Q ELL++MEQ
Sbjct: 419 TYLVDDETFYGKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQ 478
Query: 482 PLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLF 541
PLA VLAKMEI GI VKK TL EM EN+ VIE LTQEIYELAG+EFN+NSPKQLG LLF
Sbjct: 479 PLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLF 538
Query: 542 ETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILE 601
E LGLP+E TKKTKTGYSTAVDVLERLAPI+P+V KIL+YRQI K+QSTY+IGLQD+IL
Sbjct: 539 EKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILA 598
Query: 602 DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIE 661
DGKIHTRYVQDLTQTGRLSS DPNLQNIP RLEQGRLIRKAFVP +++VLLSSDYSQIE
Sbjct: 599 DGKIHTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIE 658
Query: 662 LRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS 721
LRVLAHISKDEHLI AF+EGADIHTSTAMRVFGIE+P+NVT NDRRNAKAVNFG+VYGIS
Sbjct: 659 LRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGIS 718
Query: 722 DFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDIN 781
DFGLS+NLGI RK AK YIDTYFER+PGIKNYM+ VVREA+DKGYVETLF RRR LPDIN
Sbjct: 719 DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDIN 778
Query: 782 SRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841
SRNFNIR FAE TAINSPIQGSAADILKIAMI LD+ L GGY++KMLLQVHDEIVLEVP
Sbjct: 779 SRNFNIRGFAEATAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVP 838
Query: 842 NEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
E+ +++LV +TME AI LSVPLIADEN G TWYEAK
Sbjct: 839 KSELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877
>gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus
pneumoniae TIGR4]
gi|27734651|sp|P59199|DPO1_STRPN DNA polymerase I (POL I)
gi|25288529|pir||E95003 DNA polymerase I [imported] - Streptococcus
pneumoniae (strain TIGR4)
gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus
pneumoniae TIGR4]
Length = 877
Score = 1274 bits (3297), Expect = 0.0
Identities = 653/879 (74%), Positives = 748/879 (84%), Gaps = 4/879 (0%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILV 62
+K KLLLIDGSSVAFRAFFALY Q+DRFKN +GLHTNAIYGF LML+H+L RV+PSHILV
Sbjct: 2 DKKKLLLIDGSSVAFRAFFALYQQLDRFKNVAGLHTNAIYGFQLMLSHLLERVEPSHILV 61
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFP+IR+ LD +GI+HY+L YEADDIIGT
Sbjct: 62 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPFIRELLDHMGIRHYDLAQYEADDIIGT 121
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
L K AE + FDIT+VSGDKDLIQLTD +TVVEISKKGVAEFE FTP YLME+MG+TP+
Sbjct: 122 LDKLAE--QDGFDITIVSGDKDLIQLTDEHTVVEISKKGVAEFEAFTPDYLMEEMGLTPA 179
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
QFIDLKALMGDKSDNIPGVTK+GEKTG+KLL E+GSLEGIYENI+ MK SKMKENLINDK
Sbjct: 180 QFIDLKALMGDKSDNIPGVTKVGEKTGIKLLLEHGSLEGIYENIDGMKTSKMKENLINDK 239
Query: 243 EQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQED 302
EQAFLSKTLATI+ +PI IGLED++YSGP D++ L +FYDEM FKQ K AL ++
Sbjct: 240 EQAFLSKTLATIDTKAPIAIGLEDLVYSGP-DVENLGKFYDEMGFKQLKQALNVSSADVS 298
Query: 303 FEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEAL 362
+DFT V+Q+ +M S+ ++FE+ G+NYH ++L+G W D +YAT + LLQ+ +
Sbjct: 299 ESLDFTIVDQISQDMLSEESIFHFELFGENYHTDNLVGFVWSCGDKLYATDKLELLQDPI 358
Query: 363 FKKALSK-PIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTN 421
FK L K ++ YDFK+ KVLL RF +DL PAFD RLAKYLLST EDN ++TIA LY
Sbjct: 359 FKDFLEKTSLRVYDFKKVKVLLQRFGVDLQAPAFDIRLAKYLLSTVEDNEIATIASLYGQ 418
Query: 422 LPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQ 481
L D+ YGKG K+AIPE+ +FLEHLA K+ VLV++E ++++L N Q ELL++MEQ
Sbjct: 419 TYLVDDETFYGKGVKKAIPEREKFLEHLACKLAVLVETEPILLEKLSENGQLELLYDMEQ 478
Query: 482 PLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLF 541
PLA VLAKMEI GI VKK TL EM EN+ VIE LTQEIYELAG+EFN+NSPKQLG LLF
Sbjct: 479 PLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKLTQEIYELAGEEFNVNSPKQLGVLLF 538
Query: 542 ETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILE 601
E LGLP+E TKKTKTGYSTAVDVLERLAPI+P+V KIL+YRQI K+QSTY+IGLQD+IL
Sbjct: 539 EKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILA 598
Query: 602 DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIE 661
DGKIHTRYVQDLTQTGRLSS DPNLQNIP RLEQGRLIRKAFVP +++VLLSSDYSQIE
Sbjct: 599 DGKIHTRYVQDLTQTGRLSSVDPNLQNIPARLEQGRLIRKAFVPEWEDSVLLSSDYSQIE 658
Query: 662 LRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS 721
LRVLAHISKDEHLI AF+EGADIHTSTAMRVFGIE+P++VT NDRRNAKAVNFG+VYGIS
Sbjct: 659 LRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGIS 718
Query: 722 DFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDIN 781
DFGLS+NLGI RK AK YIDTYFER+PGIKNYM+ VVREA+DKGYVETLF RRR LPDIN
Sbjct: 719 DFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDIN 778
Query: 782 SRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841
SRNFNIR FAERTAINSPIQGSAADILKIAMI LD+ L GGY++KMLLQVHDEIVLEVP
Sbjct: 779 SRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVP 838
Query: 842 NEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
E+ +++LV +TME AI LSVPLIADEN G TWYEAK
Sbjct: 839 KSELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877
>gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis
subsp. lactis]
gi|18202780|sp|Q9CDS1|DPO1_LACLA DNA polymerase I (POL I)
gi|25288526|pir||F86892 DNA-directed DNA polymerase (EC 2.7.7.7)
[imported] - Lactococcus lactis subsp. lactis (strain
IL1403)
gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I (EC 2.7.7.7)
[Lactococcus lactis subsp. lactis]
Length = 877
Score = 1150 bits (2974), Expect = 0.0
Identities = 601/887 (67%), Positives = 719/887 (80%), Gaps = 17/887 (1%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M NK++LLLIDGSSVAFRAFFALYNQIDRFK +GLHTNAI+ FH ML+ ++ R++P+H+
Sbjct: 1 MENKDRLLLIDGSSVAFRAFFALYNQIDRFKAPNGLHTNAIFAFHTMLSSLMERIEPTHV 60
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
L+AFDAGKTTFRTEM+ADYKGGR+KTPDEFREQ P+I++ ++ LGI+HYEL +YEADDII
Sbjct: 61 LIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEADDII 120
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTL K AEA N +FD+T+V+GDKD+IQL D NT VEISKKGVAEFEEFTP YL+EKMG+T
Sbjct: 121 GTLDKMAEAPNVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEKMGLT 180
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P+QFIDLKALMGD SDN PGVTK+GEKTGLKLL E+GSLE +YEN++++K SKMKENLI
Sbjct: 181 PAQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVDSLKASKMKENLIA 240
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL----GE 296
DKE AFLS+ LATIN +PI IGL+D L G + + LSQFYDEM F QFK+ L G
Sbjct: 241 DKEMAFLSQQLATINTKAPIEIGLDDTLLKG-KKVDELSQFYDEMGFAQFKSKLLAEAGG 299
Query: 297 ETSQEDF--EVDFTEVEQLK-TEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATS 353
E + E E+DF V +E + +DF+Y E LG+NYH E ++ AWGN++ IY +
Sbjct: 300 EVTDEKVVDEIDFEIVTDGSISEKVNADDFFYLETLGENYHREQIVAFAWGNAEKIYVSK 359
Query: 354 NVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVS 413
N+ LL + F P TYDFK+++VLL+ +I+LP FD LAKYL+STTEDN +S
Sbjct: 360 NIDLLTKMKF------PENTYDFKKNRVLLSHLDIELPLVKFDAMLAKYLISTTEDNKIS 413
Query: 414 TIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQE 473
TIARL+ + L TD+ ++GKG K A+P+ EHLA+K+KVL ++ +M +L NEQE
Sbjct: 414 TIARLFNSGHLATDEEIFGKGTKIALPDDAVLFEHLARKIKVLALAKEKMMAELLENEQE 473
Query: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSP 533
LL +ME PLA VLAKMEI GI V +NTL E+ EN++ + +LT+EIY+LAG+EFNINSP
Sbjct: 474 HLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLAGEEFNINSP 533
Query: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYII 593
KQLG +LFE L LPV KKTKTGYSTAVDVLE LA +SP+V KILEYRQI K+QSTY+
Sbjct: 534 KQLGVILFEKLQLPV--GKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQSTYVK 591
Query: 594 GLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLL 653
GL I +DGKIHTRYVQDLTQTGRLSS DPNLQNIPVRLE+GR IRKAFVPS+D ++LL
Sbjct: 592 GLIPQIADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSKD-SLLL 650
Query: 654 SSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVN 713
SSDYSQIELRVLAHIS DEHLI AFK GADIHTSTAMRVFGIEK E+VT NDRRNAKAVN
Sbjct: 651 SSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVN 710
Query: 714 FGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR 773
FG+VYGISDFGL+ NLGI RK AK YI+TYFERYPGIK YME +VREA+DKG+VET+ HR
Sbjct: 711 FGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMSHR 770
Query: 774 RRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVH 833
RR +PDIN+RNFN+R FAERTAINSPIQGSAADILKIAMINLD+ L +KSK+LLQVH
Sbjct: 771 RRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALSARDFKSKLLLQVH 830
Query: 834 DEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
DEI+L+VP EE+ I+ LV +TME AI L+VPL DEN G+TWYEAK
Sbjct: 831 DEIILDVPLEELDEIKVLVKQTMEEAIELAVPLKVDENTGKTWYEAK 877
>gi|6015003|sp|O32801|DPO1_LACLC DNA polymerase I (POL I)
gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus
lactis]
Length = 877
Score = 1140 bits (2949), Expect = 0.0
Identities = 598/889 (67%), Positives = 715/889 (80%), Gaps = 21/889 (2%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M +KN+LLLIDGSSVAFRAFFALYNQ+DRFK +GLHTNAI+ FH ML+ ++ R+QP+H+
Sbjct: 1 MEDKNRLLLIDGSSVAFRAFFALYNQLDRFKAPNGLHTNAIFAFHTMLSSLMERIQPTHV 60
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
L+AFDAGKTTFRTEM+ADYKGGR+KTPDEFREQ P+I++ ++ LGI+HYEL +YEADDII
Sbjct: 61 LIAFDAGKTTFRTEMFADYKGGRSKTPDEFREQLPFIKEMIEKLGIRHYELANYEADDII 120
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTL K AEA + +FD+T+V+GDKD+IQL D NT VEISKKGVAEFEEFTP YL+EKMG+T
Sbjct: 121 GTLDKMAEAPDVNFDVTIVTGDKDMIQLVDGNTRVEISKKGVAEFEEFTPDYLLEKMGLT 180
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
PSQFIDLKALMGD SDN PGVTK+GEKTGLKLL E+GSLE +YEN+E +K SKMK+NLI
Sbjct: 181 PSQFIDLKALMGDSSDNYPGVTKVGEKTGLKLLQEFGSLENLYENVETLKASKMKDNLIA 240
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
DKE AFLS+ LATIN +P+ IGLED L +++ L QFYDEM F QFK+ L +
Sbjct: 241 DKEMAFLSQQLATINTKAPLEIGLEDTLLK-EKNVAELGQFYDEMGFSQFKSKLLADGGG 299
Query: 301 EDFEVDFTEVEQLKTEMFSD---------NDFYYFEMLGDNYHVEDLIGIAWGNSDTIYA 351
E D T E++K E+ +D +DF+Y E LG+NYH E ++ AWGNS+ IY
Sbjct: 300 E--VTDETVSEEIKFEIVTDKSSVASVNADDFFYLETLGENYHREQIVAFAWGNSEKIYV 357
Query: 352 TSNVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNL 411
+ N+ LL E F P TYDFK+++VLL+ NI+LP FD LAKYL+STTEDN
Sbjct: 358 SKNLDLLTEMKF------PENTYDFKKNRVLLSHLNIELPLVKFDAMLAKYLISTTEDNK 411
Query: 412 VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANE 471
+STIARL+ L TD+ ++GKG K A+P+ +HLA+K++VL ++ +M +L NE
Sbjct: 412 ISTIARLFDVGHLATDEEIFGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENE 471
Query: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNIN 531
QE LL +ME PLA VLAKMEI GI V +NTL E+ EN++ + +LT+EIY+LAG+EFNIN
Sbjct: 472 QEHLLSDMELPLAEVLAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAGEEFNIN 531
Query: 532 SPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTY 591
SPKQLG +LFE L LPV KKTKTGYSTAVDVLE LA +SP+V KILEYRQI K QSTY
Sbjct: 532 SPKQLGVILFEKLQLPV--GKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKEQSTY 589
Query: 592 IIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAV 651
+ GL I +DGKIHTRYVQDLTQTGRLSS DPNLQNIPVRLE+GR IRKAFVPS+D ++
Sbjct: 590 VKGLIPQIADDGKIHTRYVQDLTQTGRLSSVDPNLQNIPVRLEEGRKIRKAFVPSQD-SL 648
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
LLSSDYSQIELRVLAHIS DEHLI AFK GADIHTSTAMRVFGIEK E+VT NDRRNAKA
Sbjct: 649 LLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKAEDVTANDRRNAKA 708
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
VNFG+VYGISDFGL+ NLGI RK AK YI+TYFERYPGIK YME +VREA+DKG+VET+
Sbjct: 709 VNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGFVETMS 768
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQ 831
HRRR +PDIN+RNFN+R FAERTAINSPIQGSAADILKIAMINLD+ L + KSK+LLQ
Sbjct: 769 HRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTERQSKSKLLLQ 828
Query: 832 VHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VHDEI+L+VP EE+ I+ LV +TME AI L+VPL D+N G+TWYEAK
Sbjct: 829 VHDEIILDVPLEELEDIKALVKQTMEEAIELAVPLKVDDNTGKTWYEAK 877
>gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus
faecalis V583]
gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis
V583]
Length = 882
Score = 984 bits (2545), Expect = 0.0
Identities = 520/886 (58%), Positives = 659/886 (73%), Gaps = 15/886 (1%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K KLLL+DG+SVAFRAFFAL+N ++RFKN +GLHTNAIY F+ M +++ + P+H+LVA
Sbjct: 3 KKKLLLVDGNSVAFRAFFALHNSLERFKNKNGLHTNAIYAFNNMFENVMQKEMPTHVLVA 62
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGKTTFRTE Y++YK GR+KTP EF+EQ PYIR+ L+ LG+K+YEL +YEADDIIGTL
Sbjct: 63 FDAGKTTFRTEFYSEYKAGRSKTPGEFKEQMPYIRELLEGLGVKYYELPNYEADDIIGTL 122
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKM-GITPS 182
A + + + FD+ V+SGD+DL QL V+I+ KGV++ E +TP ++ EK G+TP
Sbjct: 123 ANKVD--KDEFDVVVLSGDRDLTQLATDTVKVDITVKGVSDIESYTPEHIAEKYDGLTPK 180
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
Q ID+K L GD SDNIPGVTKIGEKT +KLL +YGS+EG+YENI+ MK+SKMKENLINDK
Sbjct: 181 QIIDMKGLAGDTSDNIPGVTKIGEKTAIKLLKQYGSVEGVYENIDEMKKSKMKENLINDK 240
Query: 243 EQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALG---EETS 299
EQAFLSK LATI + +P+ + +ED+ Y G ++++ L FY EMDFKQF A L E
Sbjct: 241 EQAFLSKRLATIEVNAPVEVNVEDLAYEG-KNLEKLVPFYKEMDFKQFLAKLDITEEPVE 299
Query: 300 QEDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQ 359
ED + E +QL EMF+D+ Y EM+ DNYH ++G+AWGN+ IY T+N+++ +
Sbjct: 300 MEDILFEVVE-DQLTNEMFTDDMALYVEMMEDNYHTSPIVGLAWGNNKKIYTTNNLAVFE 358
Query: 360 EALFKKAL---SKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNL-VSTI 415
F L ++ YD KR+ V LNR+ + AFD LA YLL T ++N + +
Sbjct: 359 SQPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMTGIAFDVLLAAYLLDTNDNNADIEGV 418
Query: 416 ARLYTNLPLDTDDAVYGKGAKRAIPEKTR-FLEHLAKKVKVLVDSEANIMQQLKANEQEE 474
A+ Y + +D+A+YGKGAK+ +PE F HLA+K+K + + + +L Q +
Sbjct: 419 AQHYGYDAIQSDEAIYGKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTEKNQAD 478
Query: 475 LLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPK 534
L ++ME PL+ +L MEI GI+V L EM +E + ++ + ++IY AG+EFN+NSPK
Sbjct: 479 LFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEFNLNSPK 538
Query: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIG 594
QLG +LFE +GLPV KKTKTGYSTAVDVLE+L +P+V IL YRQI K+QSTY+ G
Sbjct: 539 QLGVILFEKMGLPV--IKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQSTYVEG 596
Query: 595 LQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLS 654
L I D KIHTRYVQ LTQTGRLSS DPNLQNIP+RLE+GR IR+AFVP EDN ++ S
Sbjct: 597 LLKVIQPDNKIHTRYVQTLTQTGRLSSVDPNLQNIPIRLEEGRKIREAFVPREDNWLIFS 656
Query: 655 SDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF 714
SDYSQIELRVLAHIS DEHL AF EG DIH STAMRVFG+EK E+VTPN RR AKAVNF
Sbjct: 657 SDYSQIELRVLAHISNDEHLKEAFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNF 716
Query: 715 GIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR 774
GIVYGISD+GLS NLGI RK A+QYIDTYFE+YPG+K YME +VR+AKDKGYVETL+HRR
Sbjct: 717 GIVYGISDYGLSQNLGITRKQAQQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRR 776
Query: 775 RSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHD 834
R L DINSRNFN+R FAERTAIN+PIQGSAADILKIAMI + R L + ++ MLLQVHD
Sbjct: 777 RYLSDINSRNFNLRSFAERTAINTPIQGSAADILKIAMIEMARRLKEEKLQATMLLQVHD 836
Query: 835 EIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
E+V EVP E+ + +LV + ME A+SL VPLI D + G+TWYEAK
Sbjct: 837 ELVFEVPESELEQLNQLVKEVMEHAVSLHVPLITDSSWGKTWYEAK 882
>gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I
[Lactobacillus plantarum WCFS1]
gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I
[Lactobacillus plantarum WCFS1]
Length = 882
Score = 936 bits (2420), Expect = 0.0
Identities = 502/886 (56%), Positives = 645/886 (72%), Gaps = 18/886 (2%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KLLLIDG+SVAFRAFFAL++Q++RF N GLHTNAIYGF+ ML+H++ V+P+ +LVAFD
Sbjct: 4 KLLLIDGNSVAFRAFFALHSQLERFVNPDGLHTNAIYGFNTMLDHMIKAVEPTDMLVAFD 63
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
AGKTTFRT MY +YKGGRAKTP EF EQ PYI+Q LD GIKHYEL+ YEADDIIGTLA
Sbjct: 64 AGKTTFRTAMYDNYKGGRAKTPSEFSEQMPYIKQLLDAYGIKHYELKDYEADDIIGTLAA 123
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
QA+ + TVV+GD+DL QLT +T V ++ KGV+E E +TPA++ EK+GITP+Q I
Sbjct: 124 QAD--QTGYTTTVVTGDRDLTQLTTEHTTVAVTVKGVSEVEHYTPAHVEEKLGITPAQII 181
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D+K L GD SDN PGVTK+GEKT LKLL +YG++EGIYENI+AMKQSKMKE+LI D+EQA
Sbjct: 182 DMKGLTGDTSDNYPGVTKVGEKTALKLLKQYGTMEGIYENIDAMKQSKMKEHLIEDREQA 241
Query: 246 FLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDFEV 305
+K LATI +PI + L D+ Y GP D+ L+ FY +MDF+ F L ++ + +
Sbjct: 242 AQAKVLATIKRDAPIDVQLADLSYDGP-DLDQLAAFYQKMDFQSFLKKLHLQSDEPATPI 300
Query: 306 DFTEVEQ---LKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEAL 362
D+T + + + + F+D+ +Y EM NYH G A G D Y + +V LL +
Sbjct: 301 DYTVLTKANLTELQQFTDHVDFYLEMPTPNYHTSAFAGFAIGADDHWYISRDVELLMQPT 360
Query: 363 FKKALSKPIKT---YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVSTIARL 418
LS T +D KR+ V LNR I L + FD L YLL T ++ N + ++A
Sbjct: 361 VADLLSSTTITKDVFDMKRTTVGLNRLGIQLGKVDFDLLLVSYLLDTNDNSNDLGSLAEQ 420
Query: 419 --YTNLPLDTDDAVYGKGAKRAIPEKTR-FLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475
YT+LP +D+ VYGKG KRAIPE F HLA+K+ + + ++++L ANEQ++L
Sbjct: 421 HGYTDLP--SDETVYGKGVKRAIPEDDDVFFSHLARKLAAIASLKPQLLKELAANEQDQL 478
Query: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQ 535
++E+P+ANVLA+MEI GI V + L M + + + + Q IY+ AG+EFNINSPKQ
Sbjct: 479 YDDIEKPMANVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEFNINSPKQ 538
Query: 536 LGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGL 595
LG +LFE + LPV KKTKTGYSTAVDVLE+LAP +P+V IL+YRQI+K+QSTY++GL
Sbjct: 539 LGHILFEEMKLPV--IKKTKTGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVVGL 596
Query: 596 QDYILE-DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLS 654
D I D K+HTRY+Q LTQTGRLSS DPNLQNIPVRLE+GR IR+AFVPS + + S
Sbjct: 597 LDAIHSADQKVHTRYLQTLTQTGRLSSVDPNLQNIPVRLEEGRKIRQAFVPSHEGWQIFS 656
Query: 655 SDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF 714
SDYSQIELRVLAHI+ DE++ AAFK G DIH +TAMR+F + E VTPN RR AKAVNF
Sbjct: 657 SDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAMRIFHLNSAEEVTPNIRRQAKAVNF 716
Query: 715 GIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR 774
GIVYGISD+GLS N+GI RK A+ +ID YF+ YPG+K YM+ +V+ AK +GYVET+ HRR
Sbjct: 717 GIVYGISDYGLSQNIGITRKQARSFIDAYFKEYPGVKKYMDEIVQTAKKQGYVETISHRR 776
Query: 775 RSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHD 834
R LPDINS++FN R FAERTA+N+PIQGSAADI+KIAMI + L G K+ MLLQVHD
Sbjct: 777 RYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKIAMIKMQDKLQAAGLKATMLLQVHD 836
Query: 835 EIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
E++ E P EEI + +LV M+SA+ L+VPL + + G+TWY+AK
Sbjct: 837 ELIFEAPKEEIPVLEKLVPSVMDSAVQLAVPLKVESHYGDTWYDAK 882
>gi|22990810|ref|ZP_00035605.1| hypothetical protein [Enterococcus
faecium]
Length = 841
Score = 928 bits (2399), Expect = 0.0
Identities = 493/830 (59%), Positives = 616/830 (73%), Gaps = 16/830 (1%)
Query: 28 DRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDAGKTTFRTEMYADYKGGRAKTP 87
+RFKN +GLHTNAIY F+ M +++ + QP+H+LVAFDAGKTTFRTEMYA+YKGGR+KTP
Sbjct: 1 ERFKNRNGLHTNAIYAFNTMFENVMQKEQPTHVLVAFDAGKTTFRTEMYAEYKGGRSKTP 60
Query: 88 DEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQAEASNEHFDITVVSGDKDLIQ 147
EF+EQ PYIR L LG+++YEL +YEADDIIGTLA++ + + FD+ V+SGD+DL Q
Sbjct: 61 GEFKEQMPYIRDLLTGLGVQYYELPNYEADDIIGTLAEKVD--KDQFDVVVLSGDRDLTQ 118
Query: 148 LTDTNTVVEISKKGVAEFEEFTPAYLMEKM-GITPSQFIDLKALMGDKSDNIPGVTKIGE 206
L V+I+ KGV++ E +TP ++ EK G+TP Q ID+K L GD SDNIPGVTKIGE
Sbjct: 119 LASKEVKVDITVKGVSDIESYTPEHVAEKYDGLTPKQIIDMKGLAGDASDNIPGVTKIGE 178
Query: 207 KTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAFLSKTLATINIASPITIGLED 266
KT +KLL +YGS+EGIYE+I+ MKQSKMKENLINDKEQAFLSK LATIN ++P+ + ++
Sbjct: 179 KTAIKLLKQYGSVEGIYEHIDEMKQSKMKENLINDKEQAFLSKKLATINTSAPVDVSIDS 238
Query: 267 ILYSGPQDIKALSQFYDEMDFKQFKAALG---EETSQEDFEVDFTEVEQLKTEMFSDNDF 323
+ Y G +++ L FY EMDF QF + L EE +D + F V + K EMF+ +
Sbjct: 239 LKYEG-KNLDKLVPFYKEMDFNQFLSKLNIVEEEVKMDD--ILFEVVHEFKEEMFTTDMA 295
Query: 324 YYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEALFKKALSKPI---KTYDFKRSK 380
Y EM+GDNYH E+++G+AWG IY T+++S+ + F ++ P K YD KR+
Sbjct: 296 LYVEMMGDNYHTEEIVGVAWGTEKKIYVTNDLSVFENRAFHSWITDPTRLKKVYDAKRTY 355
Query: 381 VLLNRFNIDLPEPAFDTRLAKYLLSTTEDNL-VSTIARLYTNLPLDTDDAVYGKGAKRAI 439
V LNR+ FD L YLL T E + + IA Y + +D+AVYGKGAK+ +
Sbjct: 356 VALNRYTGKTKGIDFDVLLGAYLLDTNEKSTDIEGIAAHYGYNDIQSDEAVYGKGAKKGL 415
Query: 440 PEKTR-FLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVK 498
PE+ F HLA+KV + + Q+L QE+L +ME PL+ +LA+MEI GIKV
Sbjct: 416 PEEEELFFAHLARKVAAINALTPKLSQELAEKNQEDLFRKMELPLSIILAEMEISGIKVD 475
Query: 499 KNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGY 558
L EM E + + Q+IYE AG+EFN+NSPKQLG +LFE +GLPV KKTKTGY
Sbjct: 476 ATRLQEMKGEFSARLREIEQKIYEEAGEEFNLNSPKQLGVILFEKMGLPV--IKKTKTGY 533
Query: 559 STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGR 618
STAVDVLE+L +P+V IL YRQI K+QSTY+ GL I DGK+HTRYVQ LTQTGR
Sbjct: 534 STAVDVLEQLREQAPIVEDILTYRQIAKIQSTYVEGLLKVIQSDGKVHTRYVQTLTQTGR 593
Query: 619 LSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAF 678
LSS DPNLQNIP+RL++GR IR+AFVP E + ++ SSDYSQIELRVLAHIS DEHL AAF
Sbjct: 594 LSSVDPNLQNIPIRLDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAF 653
Query: 679 KEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQ 738
EG DIH STAMRVFGIEK E+VTPN RR AKAVNFGIVYGISD+GLS NLGI RK A+Q
Sbjct: 654 LEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQ 713
Query: 739 YIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINS 798
YIDTYFE+YPG+K YME +VREAKD+GYVETL+HRRR LPDINSRN+NIR FAERTAIN+
Sbjct: 714 YIDTYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINT 773
Query: 799 PIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAI 848
PIQGSAADILKIAMI LD+ L + G ++ MLLQVHDE+V EVP +E+ ++
Sbjct: 774 PIQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESL 823
>gi|23003058|ref|ZP_00046728.1| hypothetical protein [Lactobacillus
gasseri]
Length = 886
Score = 891 bits (2303), Expect = 0.0
Identities = 478/889 (53%), Positives = 637/889 (70%), Gaps = 17/889 (1%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+ KLLLIDG+SVAFRAF+ALY Q+DRF + GLHTNAI+ F ML+ I+ + PS++LVA
Sbjct: 3 QKKLLLIDGNSVAFRAFYALYRQLDRFTSPDGLHTNAIFTFKNMLDAIMKQTDPSNVLVA 62
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGK TFRT+MY DYKGGR KTP E EQ P IR+ L LGIK YEL++YEADDIIGTL
Sbjct: 63 FDAGKVTFRTKMYQDYKGGRQKTPSELSEQLPVIREMLKDLGIKSYELKNYEADDIIGTL 122
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
+K E + + + +V+GD+DL QL T V I+K GV + E +TP ++ E G+TP++
Sbjct: 123 SKMGEEAG--YTVDIVTGDRDLTQLASDKTTVLITKNGVGDTEAYTPEHMKEVNGVTPTE 180
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
FID+KALMGD SDN PGVTK+G KT +L+ +YGS+E +YE+++ MK+SK+KENLINDK+
Sbjct: 181 FIDMKALMGDNSDNYPGVTKVGPKTASRLIQKYGSVEKLYEHVDEMKKSKLKENLINDKD 240
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEE-TSQED 302
+A L+K LATI+ SP+ + L D P +I+ L Y+ + FK+F A LG S
Sbjct: 241 KAILAKKLATIDRDSPVEVTLADTKLEEP-NIEDLRNLYERLGFKKFLAELGASGVSAGK 299
Query: 303 FEVDFTEVEQLKTEMFSDND-------FYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNV 355
E + E +L E +D D +Y MLGDNYH+ L G + SD IY + +V
Sbjct: 300 QESEKYEYLELTRENIADLDKINEKEVTFYLAMLGDNYHLAPLEGFSLKVSDKIYVSKDV 359
Query: 356 SLLQEALFKKALS-KPIK--TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NL 411
LLQEA ++ L K IK +D KR+ V L+R +ID +D LA YL++ + N
Sbjct: 360 VLLQEAPLRQMLEDKKIKKNVFDIKRTYVGLHRLDIDAEGLDYDMLLASYLVNNENNSND 419
Query: 412 VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANE 471
+ +A LY + + TD VYGKG K+A+PE F EHLA KV V+ + ++++LK +E
Sbjct: 420 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPEDDEFFEHLAAKVAVIEKLKQPLLEKLKDHE 479
Query: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNIN 531
Q++L +E P+A VLAKMEI GIKV+ + LN++ + ++ L +IY+ AG+EFN+N
Sbjct: 480 QDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEFNLN 539
Query: 532 SPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTY 591
SPKQLG +LFE L LP KKTKTGYST+V+VLE+L SP+V++IL+YRQI K+Q+TY
Sbjct: 540 SPKQLGHILFEKLNLPP--IKKTKTGYSTSVEVLEQLKMKSPIVSEILDYRQIAKIQNTY 597
Query: 592 IIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAV 651
+ GL + I D +IHTRY+Q LT TGRLSS DPNLQNIP R ++G+ IRKAFVPS +
Sbjct: 598 VKGLLECIQPDSRIHTRYLQTLTATGRLSSVDPNLQNIPTRTDEGKQIRKAFVPSTKDGY 657
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
+ S DYSQ+ELRVLAH+S DEH+ AFK G DIH TAM++F ++ P+ VTP RR+AKA
Sbjct: 658 IFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKA 717
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
VNFGIVYGISD+GLS NLGI RK AK +ID YFE+YP IK+YM+ +++A++ GY ET+
Sbjct: 718 VNFGIVYGISDYGLSKNLGISRKQAKTFIDNYFEQYPQIKDYMDKAIKKARENGYAETIM 777
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQ 831
HRRR LPDI+S+NFN+R FAERTAINSPIQGSAADI+KIAMIN+ + LD+ K+KM+LQ
Sbjct: 778 HRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVLQ 837
Query: 832 VHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VHDE++ +VP +E+ I+++V + M+SA+ L VPLIAD N G WY+AK
Sbjct: 838 VHDELIFDVPKDELDTIKKIVPEVMQSAVKLDVPLIADSNWGHNWYDAK 886
>gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus
iheyensis HTE831]
gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus
iheyensis HTE831]
Length = 880
Score = 843 bits (2178), Expect = 0.0
Identities = 466/888 (52%), Positives = 620/888 (69%), Gaps = 22/888 (2%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NKL+LIDG+S+ +RAFFAL N+ G++TN +YGF ML IL +P+H+LVAF
Sbjct: 3 NKLVLIDGNSIIYRAFFAL----PLLNNDKGVYTNGVYGFTTMLLRILEEEKPTHMLVAF 58
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DAGKTTFR Y +YKGGR KTP E EQFP +++ LD IK+Y+L+ YEADDIIGTL+
Sbjct: 59 DAGKTTFRHSTYKEYKGGRQKTPPELSEQFPVLKELLDAFSIKYYQLDQYEADDIIGTLS 118
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
KQA+ + +++TV+SGDKDL+QL V ++KKG+++ E++TPAY++EKM ITP Q
Sbjct: 119 KQADKKD--WEVTVISGDKDLLQLVSEQVTVSVTKKGISDIEKYTPAYMLEKMEITPDQI 176
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
I LKALMGD SDNIPGV +GEKT KLL +Y +LE +YE+I+ + K+KENL N +E
Sbjct: 177 IHLKALMGDSSDNIPGVPGVGEKTATKLLKQYENLENVYEHIDEISGKKLKENLSNHRED 236
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEET----SQ 300
AF+SK L TIN SPI I LE++ Y G Q ++ Q + ++ F+ + + EET Q
Sbjct: 237 AFMSKELVTINRESPIEITLENLPYQGFQ-TSSVVQIFKDLGFQSLLSRVSEETEDDAEQ 295
Query: 301 EDFE---VDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSL 357
+ E ++F VE + ++F+DND Y EMLG+NYH+ + GIA N +
Sbjct: 296 PNIEMESIEFDVVENVTKDLFTDNDALYIEMLGENYHLIPIEGIAVVNKERASFIPTDIA 355
Query: 358 LQEALFKKALSKPIK---TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNL-VS 413
L +FK P K +D KR+KV L R NI++ FD+ LA YLL+ E+N +
Sbjct: 356 LNSNIFKAWAEDPQKHKIVFDAKRTKVALLRNNINMQGIIFDSLLASYLLNPAENNHDIP 415
Query: 414 TIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQE 473
IA + + D+ V+GKGAK+ +PE EH+ +K ++L D + ++L NEQ
Sbjct: 416 AIANRKSRSDVQFDEEVFGKGAKQKVPEADVLNEHVVRKTQLLFDLYPEMEEELGNNEQY 475
Query: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSP 533
ELL E+E PLA +LA++E G++V + L +M + ++ + TL QE+YELAG+ FN+NSP
Sbjct: 476 ELLKELEMPLALILAEVEHYGVQVDIDKLKDMGEDLKERLSTLEQEVYELAGETFNLNSP 535
Query: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYII 593
KQLG +LFE LGLPV KKTKTGYSTA DVLE+L ++ K+L YRQ+ KLQSTYI
Sbjct: 536 KQLGPILFEKLGLPV--IKKTKTGYSTAADVLEQLENEHDIIPKLLMYRQLGKLQSTYIE 593
Query: 594 GLQDYILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVL 652
GL + +D +IHTRY Q LTQTGRLSS +PNLQNIP+RLE+GR IR+AFVPS+DN ++
Sbjct: 594 GLLKVVRKDTSRIHTRYNQALTQTGRLSSIEPNLQNIPIRLEEGRKIRQAFVPSKDNWIM 653
Query: 653 LSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAV 712
++DYSQIELRVLAHI+ DE LI AFKE DIHT TAM VF +E E VT N RR AKAV
Sbjct: 654 FAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDE-VTSNMRRQAKAV 712
Query: 713 NFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFH 772
NFGIVYGISD+GLS NLGI RK AK++I+ YF YPG+K YM+ +V+EAK KG+V T+
Sbjct: 713 NFGIVYGISDYGLSQNLGITRKEAKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTIMK 772
Query: 773 RRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQV 832
RRR LPDI SRNFN+R FAERTA+N+PIQGSAADI+K AMI+LD L + ++ +LLQV
Sbjct: 773 RRRYLPDITSRNFNMRSFAERTAMNTPIQGSAADIIKKAMIDLDHRLKEENLQANVLLQV 832
Query: 833 HDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
HDE++LE P EI ++E+V ME+ + L VPL D + G++W++AK
Sbjct: 833 HDELILEAPENEIDKLKEIVPDVMENTVELDVPLKVDYSFGKSWFDAK 880
>gi|1205984|gb|AAB52611.1| DNA polymerase I
Length = 876
Score = 837 bits (2161), Expect = 0.0
Identities = 456/885 (51%), Positives = 608/885 (68%), Gaps = 18/885 (2%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K KL+LIDG+SVA+RAFFAL N+ G+HTNA+YGF +MLN IL QP+H+LVA
Sbjct: 2 KKKLVLIDGNSVAYRAFFAL----PLLHNDKGIHTNAVYGFTMMLNKILAEEQPTHLLVA 57
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGKTTFR E + +YKGGR +TP E EQFP +R+ L I YEL+HYEADDIIGTL
Sbjct: 58 FDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTL 117
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A +AE E F++ ++SGD+DL QL + V+I+KKG+ + E +TP + EK G+TP Q
Sbjct: 118 AARAE--QEGFEVKIISGDRDLTQLASRHVTVDITKKGITDIEPYTPETVREKYGLTPEQ 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+DLK LMGDKSDNIPGV IGEKT +KLL ++G++E + +I+ +K K+KENL ++
Sbjct: 176 IVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKGEKLKENLRQHRD 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF---KAALGEETSQ 300
A LSK LA+I +P+ + L+DI+Y G QD + + + E+ F+ F AA E +
Sbjct: 236 LALLSKQLASICRDAPVELSLDDIVYEG-QDREKVIALFKELGFQSFLEKMAAPAAEGEK 294
Query: 301 EDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
E++F V+ + EM +D E++ +NYH ++GIA N + + L +
Sbjct: 295 PLEEMEFAIVDVITEEMLADKAALVVEVMEENYHDAPIVGIALVNEHGRFFMRPETALAD 354
Query: 361 ALFKKALSKPIK---TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVSTIA 416
+ F L+ K +D KR+ V L I+L AFD LA YLL+ +D ++ +A
Sbjct: 355 SQFLAWLADETKKKSMFDAKRAVVALKWKGIELRGVAFDLLLAAYLLNPAQDAGDIAAVA 414
Query: 417 RLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELL 476
++ + +D+AVYGKG KR++P++ EHL +K + E M L+ NEQ++LL
Sbjct: 415 KMKQYEAVRSDEAVYGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPFMDDLRNNEQDQLL 474
Query: 477 FEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQL 536
++EQPLA +LA+ME G+ V L +M E + + + Q IYELAGQEFNINSPKQL
Sbjct: 475 TKLEQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIEQRIYELAGQEFNINSPKQL 534
Query: 537 GKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
G +LFE L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTYI GL
Sbjct: 535 GVILFEKLQLPV--LKKTKTGYSTSADVLEKLAPHHEIVENILHYRQLGKLQSTYIEGLL 592
Query: 597 DYILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
+ D GK+HT + Q LTQTGRLSS++PNLQNIP+RLE+GR IR+AFVPSE + ++ ++
Sbjct: 593 KVVRPDTGKVHTMFNQALTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAA 652
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELRVLAHI+ D++LI AF+ DIHT TAM +F + + E VT N RR AKAVNFG
Sbjct: 653 DYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSE-EEVTANMRRQAKAVNFG 711
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
IVYGISD+GL+ NL I RK A ++I+ YF +PG+K YME +V+EAK KGYV TL HRRR
Sbjct: 712 IVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRR 771
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
LPDI SRNFN+R FAERTA+N+PIQGSAADI+K AMI+L L + ++++LLQVHDE
Sbjct: 772 YLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDE 831
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
++LE P EEI + ELV + ME A++L VPL D + G TWY+AK
Sbjct: 832 LILEAPKEEIERLCELVPEVMEQAVTLRVPLKVDYHYGPTWYDAK 876
>gi|2126855|pir||S70368 DNA polymerase I - Bacillus
stearothermophilus
gi|806281|gb|AAC37139.1| DNA polymerase I
Length = 876
Score = 835 bits (2158), Expect = 0.0
Identities = 457/885 (51%), Positives = 606/885 (67%), Gaps = 18/885 (2%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
KNKL+LIDG+SVA+RAFFAL N+ G+HTNA+YGF +MLN IL QP+HILVA
Sbjct: 2 KNKLVLIDGNSVAYRAFFAL----PLLHNDKGIHTNAVYGFTMMLNKILAEEQPTHILVA 57
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGKTTFR E + DYKGGR +TP E EQFP +R+ L I YEL+HYEADDIIGT+
Sbjct: 58 FDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTM 117
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A +AE E F + V+SGD+DL QL VEI+KKG+ + E +TP ++EK G+TP Q
Sbjct: 118 AARAE--REGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQ 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+DLK LMGDKSDNIPGV IGEKT +KLL ++G++E + +I+ +K K+KENL ++
Sbjct: 176 IVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRD 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
A LSK LA I +P+ + L+DI+Y G +D + + + E+ F+ F + +T + +
Sbjct: 236 LALLSKQLAAICRDAPVELTLDDIVYKG-EDREKVVALFQELGFQSFLDKMAVQTDEGEK 294
Query: 304 EV---DFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
+ DF + + EM +D E++GDNYH ++GIA N + + L +
Sbjct: 295 PLAGMDFAIADSVTDEMLADKAALVVEVVGDNYHHAPIVGIALANERGRFFLRPETALAD 354
Query: 361 ALFKKALSKPIK---TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTIA 416
F L K +D KR+ V L I+L FD LA YLL + V+ +A
Sbjct: 355 PKFLAWLGDETKKKTMFDSKRAAVALKWKGIELRGVVFDLLLAAYLLDPAQAAGDVAAVA 414
Query: 417 RLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELL 476
+++ + +D+AVYGKGAKR +P++ EHLA+K + E +M +L+ NEQ+ LL
Sbjct: 415 KMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLARKAAAIWALEEPLMDELRRNEQDRLL 474
Query: 477 FEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQL 536
E+EQPLA +LA ME G+KV L +M E + ++ + + IYELAGQEFNINSPKQL
Sbjct: 475 TELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPKQL 534
Query: 537 GKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
G +LF+ L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTYI GL
Sbjct: 535 GTVLFDKLQLPV--LKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLL 592
Query: 597 DYILE-DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
+ GK+HT + Q LTQTGRLSS +PNLQNIP+RLE+GR IR+AFVPSE + ++ ++
Sbjct: 593 KVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAA 652
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELRVLAHI++D++LI AF+ G DIHT TAM +F + + E+VT N RR AKAVNFG
Sbjct: 653 DYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSE-EDVTANMRRQAKAVNFG 711
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
IVYGISD+GL+ NL I RK A ++I+ YF +PG+K YM+ +V+EAK KGYV TL HRRR
Sbjct: 712 IVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRR 771
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
LPDI SRNFN+R FAERTA+N+PIQGSAADI+K AMI+L L + ++++LLQVHDE
Sbjct: 772 YLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDE 831
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
++LE P EEI + LV + ME A++L VPL D + G TWY+AK
Sbjct: 832 LILEAPKEEIERLCRLVPEVMEQAVALRVPLKVDYHYGPTWYDAK 876
>gi|3041672|sp|P52026|DPO1_BACST DNA polymerase I (POL I)
Length = 876
Score = 833 bits (2153), Expect = 0.0
Identities = 456/885 (51%), Positives = 605/885 (67%), Gaps = 18/885 (2%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
KNKL+LIDG+SVA+RAFFAL N+ G+HTNA+YGF +MLN IL QP+HILVA
Sbjct: 2 KNKLVLIDGNSVAYRAFFAL----PLLHNDKGIHTNAVYGFTMMLNKILAEEQPTHILVA 57
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGKTTFR E + DYKGGR +TP E EQFP +R+ L I YEL+HYEADDIIGT+
Sbjct: 58 FDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLLRELLKAYRIPAYELDHYEADDIIGTM 117
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A +AE E F + V+SGD+DL QL VEI+KKG+ + E +TP ++EK G+TP Q
Sbjct: 118 AARAE--REGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQ 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+DLK LMGDKSDNIPGV IGEKT +KLL ++G++E + +I+ +K K+KENL ++
Sbjct: 176 IVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRD 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
A LSK LA I +P+ + L+DI+Y G +D + + + E+ F+ F + +T + +
Sbjct: 236 LALLSKQLAAICRDAPVELTLDDIVYKG-EDREKVVALFQELGFQSFLDKMAVQTDEGEK 294
Query: 304 EV---DFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
+ DF + + EM +D E++GDNYH ++GIA N + + L +
Sbjct: 295 PLAGMDFAIADSVTDEMLADKAALVVEVVGDNYHHAPIVGIALANERGRFFLRPETALAD 354
Query: 361 ALFKKALSKPIK---TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTIA 416
F L K +D KR+ V L I+L FD LA YLL + V+ +A
Sbjct: 355 PKFLAWLGDETKKKTMFDSKRAAVALKWKGIELRGVVFDLLLAAYLLDPAQAAGDVAAVA 414
Query: 417 RLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELL 476
+++ + +D+AVYGKGAKR +P++ EHL +K + E +M +L+ NEQ+ LL
Sbjct: 415 KMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLVRKAAAIWALEEPLMDELRRNEQDRLL 474
Query: 477 FEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQL 536
E+EQPLA +LA ME G+KV L +M E + ++ + + IYELAGQEFNINSPKQL
Sbjct: 475 TELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPKQL 534
Query: 537 GKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
G +LF+ L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTYI GL
Sbjct: 535 GTVLFDKLQLPV--LKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEGLL 592
Query: 597 DYILE-DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
+ GK+HT + Q LTQTGRLSS +PNLQNIP+RLE+GR IR+AFVPSE + ++ ++
Sbjct: 593 KVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIFAA 652
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELRVLAHI++D++LI AF+ G DIHT TAM +F + + E+VT N RR AKAVNFG
Sbjct: 653 DYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSE-EDVTANMRRQAKAVNFG 711
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
IVYGISD+GL+ NL I RK A ++I+ YF +PG+K YM+ +V+EAK KGYV TL HRRR
Sbjct: 712 IVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRR 771
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
LPDI SRNFN+R FAERTA+N+PIQGSAADI+K AMI+L L + ++++LLQVHDE
Sbjct: 772 YLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLSVRLREERLQARLLLQVHDE 831
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
++LE P EEI + LV + ME A++L VPL D + G TWY+AK
Sbjct: 832 LILEAPKEEIERLCRLVPEVMEQAVTLRVPLKVDYHYGPTWYDAK 876
>gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC
14579]
gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC
14579]
Length = 891
Score = 829 bits (2142), Expect = 0.0
Identities = 455/886 (51%), Positives = 608/886 (68%), Gaps = 19/886 (2%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+ K++L+DG+++A+RAFFAL N+ G+HTNAIYGF +ML IL +P+H+LVA
Sbjct: 16 EKKVVLVDGNNIAYRAFFAL----PLLNNDKGIHTNAIYGFTMMLMRILEEEKPTHMLVA 71
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGKTTFR + Y++YKGGR KTP E EQFP+IR+ LD + YELE+YEADDI+GTL
Sbjct: 72 FDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGTL 131
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK EAS + + V+SGDKDL+QL NT+V I +KG+ E +E+T L EK ++P Q
Sbjct: 132 AK--EASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQ 189
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
ID+K LMGD+SDNIPGV +GEKT +KLL+++G++E +YEN++ + K+KE L +KE
Sbjct: 190 IIDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENLDQVSGKKLKEKLEENKE 249
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALG---EETSQ 300
QA +SK LATI +PIT+ ++D+ Y G + + F + + F LG EET+
Sbjct: 250 QALMSKDLATIITDAPITVHVDDMAYKGYEASDVIPMF-ESLGFTSLLNKLGVTPEETAP 308
Query: 301 EDF-EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQ 359
+ ++ F VE++ EM + E+ DNYH D+ G N + Y L+
Sbjct: 309 AELDDITFDIVEEVTEEMLQQDSALIVEVQEDNYHKADIQGFGIQNENGCYFIQTDIALK 368
Query: 360 EALFKKALSK---PIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTI 415
FK+ L+ T+D KR+ V L ID+ FD +A YLL + D T+
Sbjct: 369 SDAFKEWLADGEMRKHTFDAKRAIVALKWNGIDMQGIDFDLLIAAYLLDPADTDKDFCTV 428
Query: 416 ARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475
A++ + +D+ VYGKGAKRA+PE EH+A+KV VL D + +++LK NEQ EL
Sbjct: 429 AKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQYEL 488
Query: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQ 535
E+E PLA VLA ME++G+KV L M E ++ + QEIY+LAG EFNINSPKQ
Sbjct: 489 FTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQ 548
Query: 536 LGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGL 595
LG +LFE L LPV KKTKTGYST+ DVL++L ++ IL YRQ+ KL STYI GL
Sbjct: 549 LGVILFENLNLPV--IKKTKTGYSTSADVLDKLMNHHEIIPNILHYRQLGKLNSTYIEGL 606
Query: 596 QDYILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLS 654
+ ED KIHTR+ Q LTQTGRLSS+DPNLQNIP+RLE+GR IR+AFVPSE+ ++ +
Sbjct: 607 LKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYA 666
Query: 655 SDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF 714
+DYSQIELRVLAHI+ D+ L+ AF+ DIHT TAM VFG+EK E VT N RR AKAVNF
Sbjct: 667 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDE-VTSNMRRQAKAVNF 725
Query: 715 GIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR 774
GIVYGISD+GLS NLGI RK A ++I+ Y E +PG++ YME +V++AK KGYV TL +RR
Sbjct: 726 GIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRR 785
Query: 775 RSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHD 834
R +P+I SRNFN+R FAERTA+N+PIQG+AADI+K AMI + L++ G ++++LLQVHD
Sbjct: 786 RYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHD 845
Query: 835 EIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
E++ E P EEI + +LV + ME AI L+VPL D + G TWY+AK
Sbjct: 846 ELIFEAPKEEIEKLEQLVPEVMEHAIELAVPLKVDYSYGPTWYDAK 891
>gi|755588|gb|AAA85558.1| DNA polymerase
Length = 954
Score = 826 bits (2134), Expect = 0.0
Identities = 446/890 (50%), Positives = 597/890 (66%), Gaps = 20/890 (2%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M KNKL+LIDG+SVA+RAFFAL N+ G+HTNA+YGF +MLN IL QP+HI
Sbjct: 75 MMLKNKLVLIDGNSVAYRAFFAL----PLLHNDKGIHTNAVYGFTMMLNKILAEEQPTHI 130
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
LVAFDAGKTTFR E + DYKGGR +TP E EQFP +R+ L I YEL+HYEADDII
Sbjct: 131 LVAFDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLVRELLKAYRIPAYELDHYEADDII 190
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GT+A +AE E F + V+SGD+DL QL VEI+KKG+ + E +TP ++EK G+T
Sbjct: 191 GTMAARAE--REGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLT 248
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P Q +DLK LMGDKSDNIPGV IG+KT +KLL ++G++E + +I+ +K K+KENL
Sbjct: 249 PEQIVDLKGLMGDKSDNIPGVPGIGKKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQ 308
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
++ A LSK LA I +P+ + L+DI+Y G +D + + + E+ F+ F + +T +
Sbjct: 309 YRDLALLSKQLAAICRDAPVELTLDDIVYKG-EDREKVVALFQELGFQSFLDKMAVQTDE 367
Query: 301 EDFEV---DFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSL 357
+ + DF + + EM +D E++GDNYH ++GIA N + +
Sbjct: 368 GEKPLAGMDFAIADSVTDEMLADKAALVVEVVGDNYHHAPIVGIALANERGRFFLRPETA 427
Query: 358 LQEALFKKALSKPIK---TYDFKRSKVLLNRFNIDLPEPA---FDTRLAKYLLSTTEDNL 411
+ + F L K +D KR+ V LN I+L A L
Sbjct: 428 VADPKFLAWLGDETKKKTMFDSKRAAVALNGKGIELAGVGVVFDLLLAAYLLDPAQAAGD 487
Query: 412 VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANE 471
V+ +A+++ + +D+AVYGKGAKR +P++ E L +K + E +M +L+ NE
Sbjct: 488 VAAVAKMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEQLVRKAAAIWALEEPLMDELRRNE 547
Query: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNIN 531
Q+ LL E+E LA +LA ME G+KV L +M E + ++ + + IYELAGQEFNIN
Sbjct: 548 QDRLLTELEHALAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNIN 607
Query: 532 SPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTY 591
SPKQLG +LF+ L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTY
Sbjct: 608 SPKQLGTVLFDKLQLPV--LKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTY 665
Query: 592 IIGLQDYILE-DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNA 650
I GL + GK+HT + Q LTQTGRLSS +PNLQNIP+RLE+GR IR+AFVPSE +
Sbjct: 666 IEGLLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDW 725
Query: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAK 710
++ ++DYSQIELRVLAHI++D++LI AF+ DIHT TAM +F + + E+VT N RR AK
Sbjct: 726 LIFAADYSQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSE-EDVTANMRRQAK 784
Query: 711 AVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETL 770
AVNFGIVYGISD+GL+ NL I RK A ++I+ YF +PG+K YM+ +V+EAK KGYV TL
Sbjct: 785 AVNFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTL 844
Query: 771 FHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLL 830
HRRR LPDI SRNFN+R FAERTA+N+PIQGSAADI+K AMI+L + + ++++LL
Sbjct: 845 LHRRRYLPDITSRNFNVRTFAERTAMNTPIQGSAADIIKKAMIDLSVSVREERLQARLLL 904
Query: 831 QVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
Q HDE++LE P EEIG + LV + ME A++L VPL D + G TWY+AK
Sbjct: 905 QGHDELILEAPKEEIGRLCRLVPEVMEQAVTLRVPLKVDYHYGPTWYDAK 954
>gi|21402630|ref|NP_658615.1| DNA_pol_A, DNA polymerase family A
[Bacillus anthracis A2012]
gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis
str. Ames]
gi|30259332|gb|AAP28520.1| DNA polymerase I [Bacillus anthracis
str. Ames]
Length = 877
Score = 822 bits (2123), Expect = 0.0
Identities = 452/886 (51%), Positives = 608/886 (68%), Gaps = 19/886 (2%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+ K++L+DG+++A+RAFFAL N+ G+HTNAIYGF +ML IL +P+H+LVA
Sbjct: 2 EKKVVLVDGNNIAYRAFFAL----PLLNNDKGIHTNAIYGFTMMLMRILEEEKPTHMLVA 57
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGKTTFR + Y++YKGGR KTP E EQFP+IR+ LD + YELE+YEADDI+GTL
Sbjct: 58 FDAGKTTFRHKTYSEYKGGRQKTPPELSEQFPFIREMLDAFNVPRYELENYEADDIMGTL 117
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK EAS + + V+SGDKDL+QL NT+V I +KG+ E +E+T L EK ++P Q
Sbjct: 118 AK--EASEQGASVKVISGDKDLLQLVSDNTLVCIPRKGITEVDEYTKEALFEKYSLSPKQ 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
ID+K LMGD+SDNIPGV +GEKT +KLL+++G++E +YENI+ + K+KE L +K+
Sbjct: 176 IIDMKGLMGDQSDNIPGVPGVGEKTAIKLLTQFGTVEEVYENIDQVSGKKLKEKLEANKD 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALG---EETSQ 300
QA +SK LATI +PIT+ ++D+ Y G + + F + + F LG EET+
Sbjct: 236 QALMSKDLATIITDAPITVNVDDMEYKGYEASDVIPMF-ENLGFTSLLNKLGVTPEETAP 294
Query: 301 EDF-EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQ 359
+ ++ F VE++ EM + E+ DNYH D+ G N + Y L+
Sbjct: 295 AELDDITFDIVEEVTEEMLQQDSALIVEVQEDNYHKADIQGFGIQNENGCYFIQTDIALK 354
Query: 360 EALFKKALSK---PIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTI 415
FK+ L+ T+D KR+ V L ID+ FD +A YLL + D T+
Sbjct: 355 SDAFKEWLADGEMRKYTFDAKRAIVALKWNGIDMQGIDFDLLIAAYLLDPADTDKDFRTV 414
Query: 416 ARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475
A++ + +D+ VYGKGAKRA+PE EH+A+KV VL D + +++L+ NEQ EL
Sbjct: 415 AKMKETHAVKSDEEVYGKGAKRAVPELEIVAEHVARKVHVLYDVKQTFVEELEKNEQYEL 474
Query: 476 LFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQ 535
E+E PLA VLA ME++G+KV L M E ++ + QEIY+LAG EFNINSPKQ
Sbjct: 475 FTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQ 534
Query: 536 LGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGL 595
LG +LFE L LPV KKTKTGYST+ DVL++L ++ IL YRQ+ KL STYI GL
Sbjct: 535 LGVILFENLNLPV--IKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQLGKLNSTYIEGL 592
Query: 596 QDYILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLS 654
+ ED KIHTR+ Q LTQTGRLSS+DPNLQNIP+RLE+GR IR+AFVPSE+ ++ +
Sbjct: 593 LKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEEGWIMYA 652
Query: 655 SDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF 714
+DYSQIELRVLAHI+ D+ L+ AF+ DIHT TAM VFG+EK E VT N RR AKAVNF
Sbjct: 653 ADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKDE-VTSNMRRQAKAVNF 711
Query: 715 GIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR 774
GIVYGISD+GLS NLGI RK A ++I+ Y E +PG++ YM+ +V++AK KGYV TL +RR
Sbjct: 712 GIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRR 771
Query: 775 RSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHD 834
R +P+I SRNFN+R FAERTA+N+PIQG+AADI+K AMI + L++ G ++++LLQVHD
Sbjct: 772 RYIPEITSRNFNLRSFAERTAMNTPIQGTAADIIKKAMIIMADRLEEEGLQARLLLQVHD 831
Query: 835 EIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
E++ E P EE+ + +LV + ME AI L+VPL D + G TWY+AK
Sbjct: 832 ELIFEAPKEEVEKLEKLVPEVMEHAIELAVPLKVDYSYGPTWYDAK 877
>gi|1363435|pir||JC4286 DNA-directed DNA polymerase (EC 2.7.7.7) -
Bacillus stearothermophilus
Length = 879
Score = 820 bits (2117), Expect = 0.0
Identities = 445/887 (50%), Positives = 596/887 (67%), Gaps = 20/887 (2%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
KNKL+LIDG+SVA+RAFFAL N+ G+HTNA+YGF +MLN IL QP+HILVA
Sbjct: 3 KNKLVLIDGNSVAYRAFFAL----PLLHNDKGIHTNAVYGFTMMLNKILAEEQPTHILVA 58
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGKTTFR E + DYKGGR +TP E EQFP +R+ L I YEL+HYEADDIIGT+
Sbjct: 59 FDAGKTTFRHETFQDYKGGRQQTPPELSEQFPLVRELLKAYRIPAYELDHYEADDIIGTM 118
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A +AE E F + V+SGD+DL QL VEI+KKG+ + E +TP ++EK G+TP Q
Sbjct: 119 AARAE--REGFAVKVISGDRDLTQLASPQVTVEITKKGITDIESYTPETVVEKYGLTPEQ 176
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+DLK LMGDKSDNIPGV IG+KT +KLL ++G++E + +I+ +K K+KENL ++
Sbjct: 177 IVDLKGLMGDKSDNIPGVPGIGKKTAVKLLKQFGTVENVLASIDEIKGEKLKENLRQYRD 236
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
A LSK LA I +P+ + L+DI+Y G +D + + + E+ F+ F + +T + +
Sbjct: 237 LALLSKQLAAICRDAPVELTLDDIVYKG-EDREKVVALFQELGFQSFLDKMAVQTDEGEK 295
Query: 304 EV---DFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
+ DF + + EM +D E++GDNYH ++GIA N + + + +
Sbjct: 296 PLAGMDFAIADSVTDEMLADKAALVVEVVGDNYHHAPIVGIALANERGRFFLRPETAVAD 355
Query: 361 ALFKKALSKPIK---TYDFKRSKVLLNRFNIDLPEPA---FDTRLAKYLLSTTEDNLVST 414
F L K +D KR+ V LN I+L A L V+
Sbjct: 356 PKFLAWLGDETKKKTMFDSKRAAVALNGKGIELAGVGVVFDLLLAAYLLDPAQAAGDVAA 415
Query: 415 IARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEE 474
+A+++ + +D+AVYGKGAKR +P++ E L +K + E +M +L+ NEQ+
Sbjct: 416 VAKMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEQLVRKAAAIWALEEPLMDELRRNEQDR 475
Query: 475 LLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPK 534
LL E+E LA +LA ME G+KV L +M E + ++ + + IYELAGQEFNINSPK
Sbjct: 476 LLTELEHALAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELAGQEFNINSPK 535
Query: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIG 594
QLG +LF+ L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTYI G
Sbjct: 536 QLGTVLFDKLQLPV--LKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLGKLQSTYIEG 593
Query: 595 LQDYILE-DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLL 653
L + GK+HT + Q LTQTGRLSS +PNLQNIP+RLE+GR IR+AFVPSE + ++
Sbjct: 594 LLKVVHPVTGKVHTMFNQALTQTGRLSSVEPNLQNIPIRLEEGRKIRQAFVPSEPDWLIF 653
Query: 654 SSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVN 713
++DYSQIELRVLAHI++D++LI AF+ DIHT TAM +F + + E+VT N RR AKAVN
Sbjct: 654 AADYSQIELRVLAHIAEDDNLIEAFRRWLDIHTKTAMDIFHVSE-EDVTANMRRQAKAVN 712
Query: 714 FGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR 773
FGIVYGISD+GL+ NL I RK A ++I+ YF +PG+K YM+ +V+EAK KGYV TL HR
Sbjct: 713 FGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHR 772
Query: 774 RRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVH 833
RR LPDI SRNFN+R FAERTA+N+PIQGSAADI+K AMI+L + + ++++LLQ H
Sbjct: 773 RRYLPDITSRNFNVRTFAERTAMNTPIQGSAADIIKKAMIDLSVSVREERLQARLLLQGH 832
Query: 834 DEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
DE++LE P EEIG + LV + ME A++L VPL D + G TWY+AK
Sbjct: 833 DELILEAPKEEIGRLCRLVPEVMEQAVTLRVPLKVDYHYGPTWYDAK 879
>gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus
stearothermophilus]
Length = 877
Score = 818 bits (2114), Expect = 0.0
Identities = 452/888 (50%), Positives = 604/888 (67%), Gaps = 19/888 (2%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M K KL+LIDG+SVA+RAFFAL N+ G+HTNA+YGF +MLN IL QP+H+
Sbjct: 1 MRLKKKLVLIDGNSVAYRAFFAL----PLLHNDKGIHTNAVYGFTMMLNKILAEEQPTHL 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
LVAFDAGKTTFR E + +YKGGR +TP E EQFP +R+ L I YEL YEADDII
Sbjct: 57 LVAFDAGKTTFRHETFQEYKGGRQQTPPELSEQFPLLRELLKTYRIPAYELYIYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTLA +AE E F++ ++SGD+DL QL + V+I+KKG+ + E +TP + EK G+T
Sbjct: 117 GTLAARAE--QEGFEVKIISGDRDLTQLASRHVTVDITKKGITDIEPYTPETVREKYGLT 174
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P Q +DLK LMGDKSDNIPGV IGEKT +KLL ++G++E + +I+ +K K+KE L
Sbjct: 175 PEQIVDLKGLMGDKSDNIPGVPGIGEKTAVKLLKQFGTVENVLASIDEVKGEKVKEKLRQ 234
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF---KAALGEE 297
++ A LSK LA+I +P+ + L+ ++Y G QD + + + E+ F+ F AA E
Sbjct: 235 HRDLALLSKQLASICRDAPVELSLDALVYEG-QDREKVIALFKELGFQSFLEKMAAPAAE 293
Query: 298 TSQEDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSL 357
+ E++F V+ + EM +D E++ +NYH ++GIA N + +
Sbjct: 294 GRKPLEEMEFAIVDVITEEMLADKAALVVEVMEENYHDAPIVGIALVNEHGRFFMRPETA 353
Query: 358 LQEALFKKALSKPIK---TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVS 413
L ++ F L+ K +D KR+ V L ID+ AFD LA YLL+ +D ++
Sbjct: 354 LADSQFLAWLADETKKKSMFDAKRAVVALKWKGIDVRGVAFDLLLAAYLLNPAQDAGDIA 413
Query: 414 TIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQE 473
+A++ + +D+AVYGKG KR++P++ EHL +K + E M L+ NEQ+
Sbjct: 414 AVAKMKQYEAVRSDEAVYGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPFMDDLRNNEQD 473
Query: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSP 533
+LL ++EQPLA +LA+ME G+ V L +M E + + + Q IYE AGQEFNINSP
Sbjct: 474 QLLTKLEQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIEQRIYEHAGQEFNINSP 533
Query: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYII 593
KQLG +LFE L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTYI
Sbjct: 534 KQLGVILFEKLQLPV--LKKTKTGYSTSADVLEKLAPHHEIVENILHYRQLGKLQSTYIE 591
Query: 594 GLQDYILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVL 652
GL + D GK+HT + Q LTQTGRLSS++PNLQNIP+RLE+GR IR+AFVPSE + ++
Sbjct: 592 GLLKVVRPDTGKVHTMFNQTLTQTGRLSSAEPNLQNIPIRLEEGRKIRQAFVPSEPDWLI 651
Query: 653 LSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAV 712
++DYSQIELRVLAHI+ D++LI AF+ DIHT TAM +F + + E VT N RR AKAV
Sbjct: 652 FAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSE-EEVTANMRRQAKAV 710
Query: 713 NFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFH 772
NFGIVYGISD+GL+ NL I RK A ++I+ YF +PG++ YME +V+EAK KGYV TL H
Sbjct: 711 NFGIVYGISDYGLAQNLNITRKEAAEFIERYFASFPGVRRYMENIVQEAKQKGYVTTLLH 770
Query: 773 RRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQV 832
RRR LPDI SRNFN+R FAERTA+N+PIQGSAADI+K AMI+L L + ++++LLQV
Sbjct: 771 RRRYLPDITSRNFNVRSFAERTAMNTPIQGSAADIIKKAMIDLAARLKEEQLQARLLLQV 830
Query: 833 HDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
HDE++LE P EEI + ELV + ME A+S SVPL D + G TWY+AK
Sbjct: 831 HDELILEAPKEEIERLCELVPEVMEQAVS-SVPLKVDYHYGPTWYDAK 877
>gi|23024946|ref|ZP_00064132.1| hypothetical protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 893
Score = 813 bits (2101), Expect = 0.0
Identities = 451/900 (50%), Positives = 609/900 (67%), Gaps = 27/900 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MTNK KLLL+DG+S+AFRAF+A+YNQ+DR ++ GLHTNA+ F+ L+ I+ + P
Sbjct: 1 MTNK-KLLLVDGNSLAFRAFYAMYNQLDRMISHEGLHTNALVAFNNFLDKIVDPMAPDLA 59
Query: 61 LVAFDA--GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADD 118
LVA+DA GK T R +++ +YK GR+K P+EF+EQFPY+R+ + + G+++YE EADD
Sbjct: 60 LVAWDAGSGKETHRGKLFPEYKDGRSKVPEEFKEQFPYLREMVMLHGLRNYEQAGLEADD 119
Query: 119 IIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMG 178
IIGT ++ EA+ + + +V+GD+DL QL N V ++KKGV + E +TPAY+ EK G
Sbjct: 120 IIGTYSRMGEAAG--YSVIIVTGDQDLTQLATENVTVNVTKKGVTDIESYTPAYIKEKFG 177
Query: 179 ITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENL 238
+TP+Q ID KAL GD SDN PGVTK+GEKT LKLL+EY +++ +Y+NI+ +KQSKMK+NL
Sbjct: 178 LTPAQIIDKKALTGDTSDNYPGVTKVGEKTALKLLAEYNNIDNLYDNIDKLKQSKMKDNL 237
Query: 239 INDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALG--- 295
IND+E AF ++ LATI + + + LE++ Y G D + + FY+ +DFKQ A +
Sbjct: 238 INDRELAFQARELATILTDANLPLPLEEMEYRG-VDFEKIIPFYENLDFKQHLAKIKALR 296
Query: 296 -----EETSQEDFEVDFTEVEQ---LKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSD 347
E T + D ++F E+++ M D + E +GDNYH ++IG A GN +
Sbjct: 297 KSGQLENTKEFDNGINFVELKENNLRAIAMLGDKISVHIEFVGDNYHEGEMIGFAIGNPE 356
Query: 348 T-IYATSNVSLLQEALFKKALSKP---IKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYL 403
YA+ ++SLLQ K + ++ K VL R + L FD L YL
Sbjct: 357 VGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKRLGLALKGVNFDFILVAYL 416
Query: 404 LST-TEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTR-FLEHLAKKVKVLVDSEA 461
L T DN++ST+A+ + ++ L D+ +YGKGAK +P T L H+A K L E
Sbjct: 417 LDTVANDNVLSTLAQRF-DVYLAPDEDIYGKGAKFTVPTDTNLLLSHVAHKADGLFKLEK 475
Query: 462 NIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIY 521
+LK +EQ L ++E PLA VLA ME +GIKV L + + I + IY
Sbjct: 476 PAFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYLRNKGKDLSERIADIQSAIY 535
Query: 522 ELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEY 581
AG+EFN+NSPKQLG LLFE +GLPV KKTKTGYSTAVDVLE+LAP +P+V IL+Y
Sbjct: 536 IEAGEEFNLNSPKQLGVLLFEKMGLPV--IKKTKTGYSTAVDVLEKLAPQAPIVDHILQY 593
Query: 582 RQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIR 640
RQ+ KL+STYI GL I +D KIHTR++Q LTQTGRLSS DPNLQNIP+R E+GRLIR
Sbjct: 594 RQLAKLKSTYIDGLLSVIYPKDSKIHTRFLQTLTQTGRLSSVDPNLQNIPMRSEEGRLIR 653
Query: 641 KAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPEN 700
AFVPS N + +DYSQIELRVLAH++ D+++ AF G DIH TA VFG+
Sbjct: 654 TAFVPSHPNWQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAV 713
Query: 701 VTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVRE 760
V P RR AKAVNFGIVYGISD+GL++NLGI R AK++IDTYF+ +P I +M T+
Sbjct: 714 VDPLKRRTAKAVNFGIVYGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTF 773
Query: 761 AKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD 820
A + GYVET+ HRRR LPDI ++NFN+R FAERTA+NSPIQGSAADI+KIAMI ++ L
Sbjct: 774 AHEHGYVETIAHRRRYLPDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALR 833
Query: 821 KGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
+ +++MLLQVHDE++ E P +EI + E+VT M+SA++L VPL D + G+TWY+AK
Sbjct: 834 ENNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSAVALDVPLKVDAHHGDTWYDAK 893
>gi|416913|sp|Q04957|DPO1_BACCA DNA polymerase I (POL I)
gi|419652|pir||JX0256 DNA-directed DNA polymerase (EC 2.7.7.7) -
Bacillus caldotenax
gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax]
Length = 877
Score = 813 bits (2100), Expect = 0.0
Identities = 452/886 (51%), Positives = 609/886 (68%), Gaps = 19/886 (2%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K KL+LIDGSSVA+RAFFAL N+ G+HTNA+YGF +MLN IL +P+H+LVA
Sbjct: 2 KKKLVLIDGSSVAYRAFFAL----PLLHNDKGIHTNAVYGFTMMLNKILAEEEPTHMLVA 57
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDAGKTTFR E + +YKGGR +TP E EQFP +R+ L I YELE+YEADDIIGTL
Sbjct: 58 FDAGKTTFRHEAFQEYKGGRQQTPPELSEQFPLLRELLRAYRIPAYELENYEADDIIGTL 117
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A +AE E F++ V+SGD+DL QL + V+I+KKG+ + E +TP + EK G+TP Q
Sbjct: 118 AARAE--QEGFEVKVISGDRDLTQLASPHVTVDITKKGITDIEPYTPEAVREKYGLTPEQ 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+DLK LMGDKSDNIPGV IGEKT +KLL ++G++E + +I+ +K K+KE L +E
Sbjct: 176 IVDLKGLMGDKSDNIPGVPGIGEKTAVKLLRQFGTVENVLASIDEIKGEKLKETLRQHRE 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQED- 302
A LSK LA I +P+ + L+DI Y G +D + + + E+ F+ F + +S+E+
Sbjct: 236 MALLSKKLAAIRRDAPVELSLDDIAYQG-EDREKVVALFKELGFQSFLEKMESPSSEEEK 294
Query: 303 --FEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
++ FT +++ EM +D E++ +NYH ++GIA N + + L +
Sbjct: 295 PLAKMAFTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALAD 354
Query: 361 ALFKKAL---SKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVSTIA 416
F L +K +D KR+ V L I+L +FD LA YLL + + V+ A
Sbjct: 355 PQFVAWLGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAA 414
Query: 417 RLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELL 476
++ + D+AVYGKGAKRA+P++ EHL +K + E + +L+ NEQ+ LL
Sbjct: 415 KMKQYEAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFLDELRRNEQDRLL 474
Query: 477 FEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQL 536
E+EQPL+++LA+ME G+KV L +M E + + T+ Q IYELAGQEFNINSPKQL
Sbjct: 475 VELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQRIYELAGQEFNINSPKQL 534
Query: 537 GKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILE-YRQITKLQSTYIIGL 595
G +LFE L LPV KK+KTGYST+ DVLE+LAP +V IL+ YRQ+ KLQSTYI GL
Sbjct: 535 GVILFEKLQLPV--LKKSKTGYSTSADVLEKLAPYHEIVENILQHYRQLGKLQSTYIEGL 592
Query: 596 QDYILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLS 654
+ D K+HT + Q LTQTGRLSS++PNLQNIP+RLE+GR IR+AFVPSE + ++ +
Sbjct: 593 LKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFA 652
Query: 655 SDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNF 714
+DYSQIELRVLAHI++D++L+ AF+ DIHT TAM +F + + E VTPN RR AKAVNF
Sbjct: 653 ADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE-VTPNMRRQAKAVNF 711
Query: 715 GIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR 774
GIVYGISD+GL+ NL I RK A ++I+ YFE +PG+K YME +V+EAK KGYV TL HRR
Sbjct: 712 GIVYGISDYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRR 771
Query: 775 RSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHD 834
R LPDI SRNFN+R FAER A+N+PIQGSAADI+K AMI+L+ L + ++++LLQVHD
Sbjct: 772 RYLPDITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQARLLLQVHD 831
Query: 835 EIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
E++LE P EE+ + LV + ME A++L VPL D + G TWY+AK
Sbjct: 832 ELILEAPKEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 877
>gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans]
gi|25288528|pir||A84044 DNA polymerase I polA [imported] - Bacillus
halodurans (strain C-125)
gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans]
Length = 876
Score = 790 bits (2041), Expect = 0.0
Identities = 438/884 (49%), Positives = 599/884 (67%), Gaps = 19/884 (2%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KL+LIDG+S+A+RAFFAL N+ G++TNA+YGF +ML +L +P+H++VAFD
Sbjct: 3 KLVLIDGNSIAYRAFFAL----PLLNNDKGVYTNAVYGFTMMLLKVLEDEKPTHMVVAFD 58
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
AGKTTFR + Y YK GR KTP E EQFP IR+ LD I E+E++EADD+IGTLAK
Sbjct: 59 AGKTTFRHDTYDAYKSGRQKTPPELSEQFPLIRELLDAFNIARVEVENFEADDLIGTLAK 118
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
Q AS E+F++ + +GDKDL+Q+ + V +++KG+ + + + + E+ GITP Q I
Sbjct: 119 Q--ASQENFEVKIFTGDKDLLQIVSDHVTVALTRKGITQIDVYDEKGIEERYGITPEQII 176
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D+K LMGD SDNIPGV IGEKT LKLL EYGS+E + E+I+ + KMKE L ++QA
Sbjct: 177 DMKGLMGDSSDNIPGVPGIGEKTALKLLKEYGSVEKVLESIDEISGKKMKERLEEHRDQA 236
Query: 246 FLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF---KAALGEETSQED 302
+SK LATI + +P+T+ + + G D K + + + E+DF A GE +E+
Sbjct: 237 LMSKKLATIYLEAPVTLDADSFTF-GEYDKKEVVKLFKELDFNSLLDKVDADGEGIEKEE 295
Query: 303 FE-VDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWG-NSDTIYATSNVSLLQE 360
+ +++ + ++K +D E+L +NYH D++G+A N+ Y ++ +L E
Sbjct: 296 LQSLNYETLREVKEAHLADKAALVVEVLDENYHQGDILGLAIAHNNGCYYIPTDEALRSE 355
Query: 361 ALFK--KALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLS-TTEDNLVSTIAR 417
AL + K K +D KR+ V L NI+L FD ++A YLL +T + VS + +
Sbjct: 356 ALIQWLKDERKEKWLFDAKRAVVALGWKNIELAGSTFDLQMASYLLDPSTSFHEVSDVTK 415
Query: 418 LYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF 477
+ + D+AVYGKGAKR IP++ EHLA+K + + ++ ++LK NEQ L
Sbjct: 416 HHRKGHVHEDEAVYGKGAKRRIPDEKELGEHLARKADAIFQLKEHVEEKLKENEQLGLFN 475
Query: 478 EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLG 537
E+E PL+ +L +ME G+KV L +M + +E L Q I+ELAG FNINSPKQLG
Sbjct: 476 ELEMPLSVILGRMETTGVKVDVEQLEQMGEDLNARLEELEQTIHELAGVSFNINSPKQLG 535
Query: 538 KLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQD 597
++LFE L LPV KKTKTGYST+ DVLE+LA ++ IL YRQ+ KL STYI GL
Sbjct: 536 EILFEKLQLPV--IKKTKTGYSTSADVLEKLAGQHEIIDHILHYRQLGKLNSTYIDGLLK 593
Query: 598 YILE-DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSD 656
+ + GK+HTR+ Q LTQTGRLSS+DPNLQNIP+RLE+GR IRKAFVPSE + +L++D
Sbjct: 594 VVHKGTGKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRKAFVPSEKDWFILAAD 653
Query: 657 YSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGI 716
YSQIELRVLAH ++DE L+ AF+E D+HT TAM VF + + E VT N RR+AKAVNFGI
Sbjct: 654 YSQIELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQ-EEVTSNMRRSAKAVNFGI 712
Query: 717 VYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRS 776
VYGISD+GLS NLGI RK A +I+ YF YP +K Y++ V+ EA++KGYV TL RRR
Sbjct: 713 VYGISDYGLSQNLGITRKEAATFIERYFASYPKVKEYLDHVIDEAREKGYVTTLLKRRRY 772
Query: 777 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEI 836
LPD+ SRNFN R FAERTA+N+PIQG+AADI+K AM+ + +D+ +S++LLQVHDE+
Sbjct: 773 LPDLTSRNFNQRSFAERTAMNTPIQGTAADIIKQAMVQMASRMDEEDLQSRLLLQVHDEL 832
Query: 837 VLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
+ EVP EE+ ++ELVT ME A+ L VPL D G+TWY+AK
Sbjct: 833 IFEVPKEEVAQMKELVTSVMEQAVELRVPLKVDVACGDTWYDAK 876
>gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria
monocytogenes EGD-e]
gi|25288537|pir||AE1270 DNA polymerase I [imported] - Listeria
monocytogenes (strain EGD-e)
gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria
monocytogenes]
Length = 875
Score = 789 bits (2038), Expect = 0.0
Identities = 454/885 (51%), Positives = 591/885 (66%), Gaps = 20/885 (2%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NKL+LIDG+S+A RAF+AL N+ G++TNA+YGF +ML ++L + +PSH+LVAF
Sbjct: 2 NKLVLIDGNSIANRAFYAL----PLLNNDKGVYTNAVYGFAMMLMNVLEKEKPSHVLVAF 57
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DAGKTTFR + YKGGR KTP E EQFP+IR+ L I YEL +YEADDIIGTL
Sbjct: 58 DAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTLT 117
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
K+AEA + ++ +++GD+DL QL T V I+KKG+A+ E TP L EK +TP Q
Sbjct: 118 KKAEA--DGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNTPETLKEKYNLTPEQI 175
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEY-GSLEGIYENIEAMKQSKMKENLINDKE 243
ID+K LMGD SDNIPG+ +GEKT LKLL E+ G++E + E+ E + K+KE ++ +KE
Sbjct: 176 IDMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKE 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQ-FKAALGE--ETSQ 300
A LSK LATIN+ SPI +E Y G Q K + EM+F K G+ E S+
Sbjct: 236 LAILSKELATINVDSPIECTVESTKYDGYQTEKVIP-LLKEMNFTTLLKNIEGDTPEESK 294
Query: 301 EDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQ 359
E E+ F V +LK + F Y E+ DNYH + IG+ +S T + T +
Sbjct: 295 ELKELSFEIVTELKEQHFGGKTALYVELENDNYHTANFIGLTVHSSQGTYFFTKETAESS 354
Query: 360 EALFKKALSKPIK-TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTE--DNLVSTIA 416
EA K S K YD K++ V +NR + + FD LA YLL+ ++ D+ S
Sbjct: 355 EAFRKWVESDQTKVVYDAKKTIVAMNRIGLAISGITFDIMLASYLLNPSDSIDDFTSVAV 414
Query: 417 RLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELL 476
R + ++TD+AVYGKGAKR+ PE++ HLA+K + D E ++ L+ NEQ L+
Sbjct: 415 R-HDYTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALM 473
Query: 477 FEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQL 536
++E PL VLA+ME++G+ V + L +M +E ++TL I+ LAG+EFNINSPKQL
Sbjct: 474 EDLELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLAGEEFNINSPKQL 533
Query: 537 GKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
G +LFE L LP KKTKTGYSTA DVLE L+ ++ +IL YRQ+ K+QSTYI GL
Sbjct: 534 GVILFEKLELPP--VKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLL 591
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
E K+HTR+ Q LTQTGRLSS DPNLQNIP+RLE+GR IR+ FVPS+ + S+
Sbjct: 592 KVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSA 651
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQ+ELRVLAHIS+DE+LI AFK DIHT TAM VF +EK E V RR AKAVNFG
Sbjct: 652 DYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEK-EEVDSLMRRQAKAVNFG 710
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
IVYGISD+GLS NLGI RK AK +ID YF YP +K YM+ +VR AK+KGYVET+ HRRR
Sbjct: 711 IVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRR 770
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
+P+I SRNFN+R FAERTA+N+PIQGSAADI+K AMI + L ++K+LLQVHDE
Sbjct: 771 YIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDE 830
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
++ E P EI + E+V ME+A+ LSVPL D G+TWY+AK
Sbjct: 831 LIFEAPEAEIAKLEEIVPDVMENAVELSVPLKVDSAFGDTWYDAK 875
>gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus
epidermidis ATCC 12228]
gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I
[Staphylococcus epidermidis ATCC 12228]
Length = 903
Score = 788 bits (2035), Expect = 0.0
Identities = 438/887 (49%), Positives = 590/887 (66%), Gaps = 23/887 (2%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NKL+LIDG+S++FRAF+AL N++G+HTNA+YGF ++L I+ +P+H LVAF
Sbjct: 29 NKLVLIDGNSLSFRAFYAL----PLLSNHAGIHTNAVYGFAMLLEKIIKEEKPNHFLVAF 84
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DAGKTTFR Y++YKGGR KTP E EQFPYIRQ LD IK YEL++YEADDIIGTL+
Sbjct: 85 DAGKTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLS 144
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKM-GITPSQ 183
+QA+ E F+ +++GD+DL QL N + +KKGV + + +TP ++ EK G+ P Q
Sbjct: 145 RQAD--EEDFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPKFIAEKYNGLVPKQ 202
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
ID+K LMGD SDNIPGV +GEKT +KLL+++ S+EG+YE+IE + K+KE LIN K+
Sbjct: 203 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKD 262
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
A +SK LATIN+ SPI + LED + D + + +++FKQ A + ++ E+
Sbjct: 263 DALMSKDLATINVHSPIEVSLEDTKLTLQDDTTKKIELFKKLEFKQLLADIDTSSTNEEV 322
Query: 304 EVDFTEVEQLKTEMFSDNDF----YYFEMLGDNYHVEDLI--GIAWGNSDTIYATSNV-- 355
E+EQ + ND +FE+ G NY + ++ G + + +V
Sbjct: 323 IDKTFEIEQ-DFQNVDLNDLNEAVIHFELEGTNYLKDTILKFGFYTNHQHVVINAEDVKD 381
Query: 356 -SLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVS 413
L + L K +K + YD K++ V +R I++ FD LA Y++ + + V
Sbjct: 382 YKHLVQWLEDKNTTKIV--YDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVK 439
Query: 414 TIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQE 473
++ LY + + ++GKG K IPE+ EH+A + + + QL+ Q
Sbjct: 440 SVVSLYGQNYVKDNITIFGKGKKHHIPEEPILNEHIASVTEAIAAVTPTMKSQLEDYNQI 499
Query: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSP 533
ELL ++E PLA +L++ME GI N L EM E QK ++ L I+E AG+ FNINSP
Sbjct: 500 ELLKDLELPLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSP 559
Query: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYII 593
KQLG +LFETL LPV KKTKTGYSTAVDVLE+L P++ ILEYRQ+ KLQSTY+
Sbjct: 560 KQLGVVLFETLQLPV--IKKTKTGYSTAVDVLEKLQGEHPIIDDILEYRQLAKLQSTYVE 617
Query: 594 GLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLL 653
GLQ I +D +IHTR+ Q L QTGRLSS DPNLQNIP+RLE+GR IRKAF P+ ++V+L
Sbjct: 618 GLQKVISKDHRIHTRFNQTLAQTGRLSSIDPNLQNIPIRLEEGRKIRKAFKPTSKDSVIL 677
Query: 654 SSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVN 713
S+DYSQIELRVLAHI++DE L AF G DIHT+TAM+VF +E + V RR AKAVN
Sbjct: 678 SADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVES-DQVDSLMRRQAKAVN 736
Query: 714 FGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR 773
FGIVYGISD+GLS +LGI RK AK +ID Y +PG+K YM +V++AK +GYVETL HR
Sbjct: 737 FGIVYGISDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHR 796
Query: 774 RRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVH 833
RR +PDI SRNFN+R FAERTA+N+PIQGSAADI+K+AM+ + + Y +K+LLQVH
Sbjct: 797 RRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVH 856
Query: 834 DEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
DE++ E+P E+ + V + ME A+ L VPL D N G TWY+AK
Sbjct: 857 DELIFEIPKSEVEDFSKFVEEIMEQALVLDVPLKVDSNYGATWYDAK 903
>gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua]
gi|25288538|pir||AG1632 DNA polymerase I [imported] - Listeria
innocua (strain Clip11262)
gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua]
Length = 875
Score = 786 bits (2031), Expect = 0.0
Identities = 447/885 (50%), Positives = 590/885 (66%), Gaps = 20/885 (2%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NKL+LIDG+S+A RAF+AL N+ G++TNA+YGF +ML ++L + +PSH+LVAF
Sbjct: 2 NKLVLIDGNSIANRAFYAL----PLLNNDKGVYTNAVYGFAMMLMNVLEKEKPSHVLVAF 57
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DAGKTTFR + YKGGR KTP E EQFP+IR+ L I YEL +YEADDIIGTL
Sbjct: 58 DAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQYELANYEADDIIGTLT 117
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
K+AEA + ++ +++GD+DL QL T V I+KKG+A+ E TP L EK +TPSQ
Sbjct: 118 KKAEA--DGMEVAIITGDRDLTQLASRKTTVYITKKGIADMETNTPETLKEKYDLTPSQI 175
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEY-GSLEGIYENIEAMKQSKMKENLINDKE 243
ID+K LMGD SDNIPG+ +GEKT LKLL E+ G++E + E+ E + K+KE ++ +KE
Sbjct: 176 IDMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHAEEISGKKLKEKVLENKE 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQED- 302
A LSK LATIN+ SPI +E Y G Q K + EM+F + +T++E
Sbjct: 236 LAILSKELATINVDSPIECTVESTKYDGYQTEKVIP-LLKEMNFTTLLKNIEGDTAEEAK 294
Query: 303 --FEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQE 360
E+ F V +LK + F Y E+ DNYH + IG+ +S Y + + +
Sbjct: 295 ELKELSFEIVTELKEQHFGGKTALYVELENDNYHTANFIGLTVHSSQGTYFFTKETAEKS 354
Query: 361 ALFKKAL-SKPIK-TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTE--DNLVSTIA 416
A+F+ + S K YD K++ V +NR + FD LA YLL+ ++ D+ S
Sbjct: 355 AVFRNWVESDETKVVYDAKKTMVAMNRIGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAV 414
Query: 417 RLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELL 476
R + ++TD+A+YGKGAKR+ PE+ HLA+K + + E ++ L+ NEQ L+
Sbjct: 415 R-HDYTEVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDDLEENEQLALM 473
Query: 477 FEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQL 536
++E PL VLA+ME++G+ V L M +E ++TL + I+ LAG+EFNINSPKQL
Sbjct: 474 EDLELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAGEEFNINSPKQL 533
Query: 537 GKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
G +LFE L LP KKTKTGYSTA DVLE L+ ++ +IL YRQ+ K+QSTYI GL
Sbjct: 534 GVILFEKLELPP--VKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLL 591
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
E K+HTR+ Q LTQTGRLSS DPNLQNIP+RLE+GR IR+ FVPS+ + S+
Sbjct: 592 KVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQNIPIRLEEGRKIRQVFVPSKPGWKMFSA 651
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQ+ELRVLAHIS+DE+LI AFK DIHT TAM VF +E+ E V RR AKAVNFG
Sbjct: 652 DYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQDE-VDSLMRRQAKAVNFG 710
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
IVYGISD+GLS NLGI RK AK +ID YF YP +K YM+ +VR AK+KGYVET+ HRRR
Sbjct: 711 IVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRR 770
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
+P+I SRNFN+R FAERTA+N+PIQGSAADI+K AMI + L ++K+LLQVHDE
Sbjct: 771 YIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDE 830
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
++ E P EI + E+V ME+A+ LSVPL D G+TWY+AK
Sbjct: 831 LIFEAPEAEIAKLEEIVPDVMENAVELSVPLKVDSAFGDTWYDAK 875
>gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus
aureus subsp. aureus MW2]
gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I
[Staphylococcus aureus]
gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus
subsp. aureus MW2]
Length = 876
Score = 785 bits (2028), Expect = 0.0
Identities = 437/889 (49%), Positives = 602/889 (67%), Gaps = 27/889 (3%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NKL+LIDG+S++FRAF+AL N +G+HTNA+YGF ++L IL +P+H LVAF
Sbjct: 2 NKLVLIDGNSLSFRAFYAL----PLLSNKAGIHTNAVYGFAMLLEKILKEEKPNHFLVAF 57
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DAGKTTFR E Y++YKGGR KTP E EQFPYIRQ LD IK YEL++YEADDIIGTL+
Sbjct: 58 DAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLS 117
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKM-GITPSQ 183
K+A+ + F +++GD+DL QL N + +KKGV + + +TP ++ EK G+TP+Q
Sbjct: 118 KEADKAG--FQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQ 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
ID+K LMGD SDNIPGV +GEKT +KLL+++ ++EG+YE+++ + K+KE L N KE
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
A +SK LATIN+ SPI + LED L + + + + + +++FKQ A + + S ED
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLADIDQSASVEDA 295
Query: 304 EVDFTEVEQLKTEMFSDNDF-------YYFEMLGDNYHVEDLIGIAW--GNSDTIYATSN 354
E+E F + DF +FE+ G NY +++ + G + +
Sbjct: 296 IEKTFEIET----SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADD 351
Query: 355 VSLLQE--ALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NL 411
++ E + + SK + YD K++ V +R ID+ +FD LA Y++ + +
Sbjct: 352 INNYVELVSWLENPNSKKV-VYDAKKTYVASHRLGIDIQNISFDIMLASYIIDPSRTISD 410
Query: 412 VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANE 471
V ++ LY + D ++YGKG K +PE ++A + ++ N+ +QL+
Sbjct: 411 VQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQLEEYN 470
Query: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNIN 531
Q ELL ++E PLA +L++ME GI + L EM E Q+ ++ L + I++ AG++FNIN
Sbjct: 471 QVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGEDFNIN 530
Query: 532 SPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTY 591
SPKQLG +LFETL LPV KKTKTGYSTAVDVLE+L P++ ILEYRQ++KLQSTY
Sbjct: 531 SPKQLGVVLFETLQLPV--IKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTY 588
Query: 592 IIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAV 651
+ GLQ I +D +IHTR+ Q L QTGRLSS DPNLQNIPVRLE+GR IRKAF P+ ++V
Sbjct: 589 VEGLQKVISDDQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAFKPTSKDSV 648
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
+LS+DYSQIELRVLAHI++DE + AF G DIHT+TAM+VFG+E + V RR AKA
Sbjct: 649 ILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEA-DQVDSLMRRQAKA 707
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
VNFGIVYGISD+GLS +LGI RK AK +ID Y +PG+K YM +V++AK GYVETL
Sbjct: 708 VNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLL 767
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQ 831
HRRR +PDI SRNFN+R FAERTA+N+PIQGSAADI+K+AM+ + + + Y++K+LLQ
Sbjct: 768 HRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQAKLLLQ 827
Query: 832 VHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VHDE++ EVP E+ + E V + ME+A+ L VPL D + G TWY+AK
Sbjct: 828 VHDELIFEVPKSEVDSFSEFVEEIMENALQLDVPLKVDSSYGATWYDAK 876
>gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus
aureus subsp. aureus Mu50]
gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus
aureus subsp. aureus N315]
gi|25288531|pir||G89952 DNA polymerase I [imported] -
Staphylococcus aureus (strain N315)
gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus
subsp. aureus N315]
gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus
subsp. aureus Mu50]
Length = 876
Score = 785 bits (2026), Expect = 0.0
Identities = 440/894 (49%), Positives = 603/894 (67%), Gaps = 37/894 (4%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NKL+LIDG+S++FRAF+AL N +G+HTNA+YGF ++L IL +P+H LVAF
Sbjct: 2 NKLVLIDGNSLSFRAFYAL----PLLSNKAGIHTNAVYGFAMLLEKILKEEKPNHFLVAF 57
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DAGKTTFR E Y++YKGGR KTP E EQFPYIRQ LD IK YEL++YEADDIIGTL+
Sbjct: 58 DAGKTTFRHEKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLS 117
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKM-GITPSQ 183
K+A+ + F +++GD+DL QL N + +KKGV + + +TP ++ EK G+TP+Q
Sbjct: 118 KEADKAG--FQTIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPDFIAEKYNGLTPNQ 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
ID+K LMGD SDNIPGV +GEKT +KLL+++ ++EG+YE+++ + K+KE L N KE
Sbjct: 176 IIDMKGLMGDTSDNIPGVAGVGEKTAIKLLNQFDTVEGVYEHLDEISGKKLKEKLQNSKE 235
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
A +SK LATIN+ SPI + LED L + + + + + +++FKQ + + + S ED
Sbjct: 236 DALMSKELATINVDSPIEVKLEDTLMTHQDEQQEKIELFKKLEFKQLLSDIDQSASVEDA 295
Query: 304 EVDFTEVEQLKTEMFSDNDF-------YYFEMLGDNYHVEDLIGIAWG--------NSDT 348
E+E F + DF +FE+ G NY +++ + N+D
Sbjct: 296 IEKTFEIET----SFDNIDFTSLKEAAIHFELDGGNYLRNNILKFSLFTGEKHIVINADD 351
Query: 349 IYATSN-VSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT 407
I + VS L+ KK + YD K++ V +R ID+ +FD LA Y++ +
Sbjct: 352 INNYAELVSWLENPNTKKVV------YDAKKTYVASHRLGIDIQNISFDIMLASYIIDPS 405
Query: 408 ED-NLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQ 466
+ V ++ LY + D ++YGKG K +PE ++A + ++ N+ +Q
Sbjct: 406 RTISDVQSVVSLYGQSFVKDDVSIYGKGKKFKVPEDDVLNPYVASITDAIYFAKPNMDKQ 465
Query: 467 LKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ 526
L+ Q ELL ++E PLA +L++ME GI + L EM E Q+ ++ L + I++ AG+
Sbjct: 466 LEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLDVLIRNIHDAAGE 525
Query: 527 EFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITK 586
+FNINSPKQLG +LFETL LPV KKTKTGYSTAVDVLE+L P++ ILEYRQ++K
Sbjct: 526 DFNINSPKQLGVVLFETLQLPV--IKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSK 583
Query: 587 LQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPS 646
LQSTY+ GLQ I +D +IHTR+ Q L QTGRLSS DPNLQNIPVRLE+GR IRKAF P+
Sbjct: 584 LQSTYVEGLQKVISDDQRIHTRFNQTLAQTGRLSSVDPNLQNIPVRLEEGRKIRKAFKPT 643
Query: 647 EDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDR 706
++V+LS+DYSQIELRVLAHI++DE + AF G DIHT+TAM+VFG+E + V R
Sbjct: 644 SKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEA-DQVDSLMR 702
Query: 707 RNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGY 766
R AKAVNFGIVYGISD+GLS +LGI RK AK +ID Y +PG+K YM +V++AK GY
Sbjct: 703 RQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGY 762
Query: 767 VETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKS 826
VETL HRRR +PDI SRNFN+R FAERTA+N+PIQGSAADI+K+AM+ + + + Y++
Sbjct: 763 VETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQA 822
Query: 827 KMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
K+LLQVHDE++ EVP E+ + E V + ME+A+ L VPL D + G TWY+AK
Sbjct: 823 KLLLQVHDELIFEVPKSEVDSFSEFVEEIMENALQLDVPLKVDSSYGATWYDAK 876
>gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis]
gi|6015001|sp|O34996|DPO1_BACSU DNA polymerase I (POL I)
gi|7434813|pir||E69680 DNA polymerase I polA - Bacillus subtilis
gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis]
gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis
subsp. subtilis str. 168]
Length = 880
Score = 783 bits (2023), Expect = 0.0
Identities = 439/890 (49%), Positives = 595/890 (66%), Gaps = 20/890 (2%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT + KL+L+DG+S+A+RAFFAL N+ G+HTNA+YGF ++L +L +P+H+
Sbjct: 1 MTERKKLVLVDGNSLAYRAFFAL----PLLSNDKGVHTNAVYGFAMILMKMLEDEKPTHM 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
LVAFDAGKTTFR + +YKGGR KTP E EQ P+IR+ LD I YELE YEADDII
Sbjct: 57 LVAFDAGKTTFRHGTFKEYKGGRQKTPPELSEQMPFIRELLDAYQISRYELEQYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTLAK AE + F++ V SGDKDL QL T V I++KG+ + E +TP ++ EK G+T
Sbjct: 117 GTLAKSAE--KDGFEVKVFSGDKDLTQLATDKTTVAITRKGITDVEFYTPEHVKEKYGLT 174
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P Q ID+K LMGD SDNIPGV +GEKT +KLL ++ S+E + E+I+ + K+KE L
Sbjct: 175 PEQIIDMKGLMGDSSDNIPGVPGVGEKTAIKLLKQFDSVEKLLESIDEVSGKKLKEKLEE 234
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
K+QA +SK LATI +PI + + + Y G + ++ F D + F LGE++++
Sbjct: 235 FKDQALMSKELATIMTDAPIEVSVSGLEYQGFNREQVIAIFKD-LGFNTLLERLGEDSAE 293
Query: 301 EDF-----EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNV 355
+ +++ V + +++ + E +GDNYH E ++G + N Y
Sbjct: 294 AEQDQSLEDINVKTVTDVTSDILVSPSAFVVEQIGDNYHEEPILGFSIVNETGAYFIPKD 353
Query: 356 SLLQEALFKKALSKPIK---TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NL 411
++ +FK+ + + +D KR+ V L I+L FDT LA Y+++ +
Sbjct: 354 IAVESEVFKEWVENDEQKKWVFDSKRAVVALRWQGIELKGAEFDTLLAAYIINPGNSYDD 413
Query: 412 VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANE 471
V+++A+ Y + +D++VYGKGAKRA+P + EHL +K + ++Q+L+ N+
Sbjct: 414 VASVAKDYGLHIVSSDESVYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELENND 473
Query: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNIN 531
Q EL E+E PLA +L +ME G+KV + L M E ++ ++I+E+AG+ FNIN
Sbjct: 474 QLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPFNIN 533
Query: 532 SPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTY 591
SPKQLG +LFE +GLPV KKTKTGYST+ DVLE+LA +V IL+YRQI KLQSTY
Sbjct: 534 SPKQLGVILFEKIGLPV--VKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQSTY 591
Query: 592 IIGLQDYILEDG-KIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNA 650
I GL D K+HTR+ Q LTQTGRLSS+DPNLQNIP+RLE+GR IR+AFVPSE +
Sbjct: 592 IEGLLKVTRPDSHKVHTRFNQALTQTGRLSSTDPNLQNIPIRLEEGRKIRQAFVPSEKDW 651
Query: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAK 710
++ ++DYSQIELRVLAHISKDE+LI AF DIHT TAM VF + K E VT RR AK
Sbjct: 652 LIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKDE-VTSAMRRQAK 710
Query: 711 AVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETL 770
AVNFGIVYGISD+GLS NLGI RK A +ID Y E + G+K YME V+EAK KGYV TL
Sbjct: 711 AVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFQGVKAYMEDSVQEAKQKGYVTTL 770
Query: 771 FHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLL 830
HRRR +P++ SRNFNIR FAERTA+N+PIQGSAADI+K AMI++ L + K+++LL
Sbjct: 771 MHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAADIIKKAMIDMAAKLKEKQLKARLLL 830
Query: 831 QVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
QVHDE++ E P EEI + +LV + ME A++L VPL D +G +WY+AK
Sbjct: 831 QVHDELIFEAPKEEIEILEKLVPEVMEHALALDVPLKVDFASGPSWYDAK 880
>gi|23037507|ref|ZP_00069715.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 911
Score = 783 bits (2021), Expect = 0.0
Identities = 433/894 (48%), Positives = 598/894 (66%), Gaps = 26/894 (2%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
LLLIDG+S+AFRAF+A+YNQ+DR ++GLHTNA+ F+ + ++ ++ P + LVA+DA
Sbjct: 24 LLLIDGNSLAFRAFYAMYNQLDRMVAHTGLHTNALVAFNNFFDQVVEKMNPDYALVAWDA 83
Query: 67 GK--TTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
GK TTFR +++ DYKG R TP E EQFPY+R+ +D+ GI YEL +EADDIIGT +
Sbjct: 84 GKGATTFRAKIFDDYKGDRQTTPPELSEQFPYLRKMVDLHGIHSYELPGFEADDIIGTYS 143
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKM-GITPSQ 183
K AE + T+++GD+DL QL N V ++KKGV E + +TP +L EK GITPSQ
Sbjct: 144 KLAEKAG--LKTTIITGDRDLTQLVTDNVSVNVTKKGVTELDRYTPKFLAEKWGGITPSQ 201
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
I++K+L GD SD+ PGVTK+G KT +KLL+E+GSL+GIY++I++MK SK+KENL+NDKE
Sbjct: 202 VIEMKSLTGDTSDHYPGVTKVGLKTAIKLLNEFGSLDGIYQHIDSMKTSKLKENLLNDKE 261
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK--------QFKAALG 295
A+ + LATI +P+ + +++++ + P + + L FY+E+DFK KA +
Sbjct: 262 SAYRAHELATIRTDAPVELEMKELI-NQPINFQELIPFYEELDFKVQLAKIHSMQKAGMV 320
Query: 296 EETSQEDFEVDFTEVEQLKTEMFSDNDFY---YFEMLGDNYHVEDLIGIAWGN-SDTIYA 351
+ +E+ V TE++ + S+ Y YF+ DNYH + GN +D +A
Sbjct: 321 GQDQEEEKNVQVTELKAANLDHLSEIKNYLTVYFQTDSDNYHTAKISAFVVGNENDGYFA 380
Query: 352 TSNVSLLQEALFKKALSKPIKTYDF--KRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTE- 408
+ ++ LL ++ +K + Y F K VLLNR + + FD L YLL TT+
Sbjct: 381 SRDLELLNSSVVRKLFKGDLPKYVFNAKELIVLLNRLGLQINNLDFDFLLVSYLLDTTDN 440
Query: 409 DNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFL-EHLAKKVKVLVDSEANIMQQL 467
DN ++T+A + N+ L++D VYG G K IPE L H+A K + M++L
Sbjct: 441 DNQLATLANRF-NVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKL 499
Query: 468 KANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQE 527
++Q EL ++E PL+ VLA MEI GIK+ + L ++ E + I L ++IYE AGQE
Sbjct: 500 SDHQQAELYRQIELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQE 559
Query: 528 FNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKL 587
FNINSPKQL LLF + +P KKTKTGYSTA +VLE LA P V IL+YRQ+ KL
Sbjct: 560 FNINSPKQLADLLFAHMKIPP--IKKTKTGYSTAANVLEELAEKYPFVGLILQYRQLAKL 617
Query: 588 QSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPS 646
STY+ GL + + +D KIHTRY+Q LTQTGRLSS DPN+QNIP R E+G+ IRKAFVPS
Sbjct: 618 NSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDRDEEGKRIRKAFVPS 677
Query: 647 EDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDR 706
+ + SDYSQIELRVLAH++ DE+L AF+ G DIH +TA +FG+ + +T + R
Sbjct: 678 HEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGEDIHAATARSIFGLSTDQKITFDQR 737
Query: 707 RNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGY 766
R AKAVNFGIVYGISDFGL+ LG R K+ I TYF +P +KN++++++ A +GY
Sbjct: 738 RRAKAVNFGIVYGISDFGLAQRLGTSRIEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGY 797
Query: 767 VETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKS 826
VET+ RRR LPDI+S+NFN+R FAERTA N+PIQGSAADI+KIAMI + + LD K+
Sbjct: 798 VETIAQRRRYLPDIHSKNFNLRSFAERTATNTPIQGSAADIIKIAMIKMQQALDDNHLKA 857
Query: 827 KMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
KMLLQVHDE++ E P +EI + ELV K M+SA+ L+VPL + + G WY+ K
Sbjct: 858 KMLLQVHDELIFEAPKQEIDILEELVPKVMDSAVKLNVPLRVEAHHGVNWYDEK 911
>gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani
E88]
gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani
E88]
Length = 882
Score = 654 bits (1687), Expect = 0.0
Identities = 399/911 (43%), Positives = 565/911 (61%), Gaps = 66/911 (7%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M ++KL+++DG+S+ RAF+AL N+ G+HTNA+YGF ML I ++P +I
Sbjct: 7 MPKRDKLVILDGNSLMNRAFYAL----PPLTNHEGVHTNAVYGFTNMLLKIKDDIKPDYI 62
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
+ FD TFR + Y DYK GR K P+E REQFP ++ L L I+ +E+E +EADD+I
Sbjct: 63 VCTFDKSAPTFRHQAYKDYKAGRKKMPEELREQFPIVKGLLSKLAIEIFEIEGFEADDLI 122
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
GTL+K AE + ++ +V+GDKD +QL T + +K+G+ E E + ++++MG+T
Sbjct: 123 GTLSKFAEEKD--IEVYIVTGDKDALQLASDTTKILFTKRGITEREIYDRQKVVDEMGVT 180
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P++FID+K LMGD SDNIPGV IGEKT LKL+ EY S+E + NIE + K+KENLI
Sbjct: 181 PTEFIDVKGLMGDPSDNIPGVPGIGEKTALKLIKEYSSVENVLNNIENLSGKKLKENLIE 240
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF--KAALGEET 298
+ EQA SK LATI PI I LE I DI+A+ + + ++ FK K GE
Sbjct: 241 NSEQAIFSKKLATIMRNVPIDIDLEKIKSKEEYDIEAVREIFIKLQFKSLIDKIPKGENH 300
Query: 299 SQ---------------EDFEVDFTEVEQLKTEMF-----SDNDFY-------YFEMLGD 331
+ ED TE+ +++ +D Y + + +
Sbjct: 301 KEVEEEEELVYEEIHTIEDLIKLCTEIGNKDEKIYVNFKSTDTSLYSKISLEKLYILFKN 360
Query: 332 NYHVEDLIGIAWGNSDTIYATSNVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLP 391
+V ++ N D + +L+ K+A+ + ++D K + L + +++
Sbjct: 361 KCYVVNIEERIEENKD-----KTIEILKTIFEKEAVR--VVSHDVKVLSMALKKLDVEFT 413
Query: 392 EPAFDTRLAKYLL--STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHL 449
+ FD ++A YL+ S ++ +L + I + + D ++ R I E T LE L
Sbjct: 414 KALFDLKIAAYLIDSSKSDYDLSTLIQECLSKIVKDDEE--------REIRE-TSLLEKL 464
Query: 450 AKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIEN 509
AN+ +Q+ E E+L +E+E PLA VLA ME+ G KV L + +
Sbjct: 465 C----------ANLKEQIINLEMEKLYYEVELPLAFVLANMELEGFKVDGEMLENIGKKL 514
Query: 510 QKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLA 569
Q+ IE + +EIYELA +EFN+NSPKQLGK+LFE L LPV KKTKTGYST VLE L
Sbjct: 515 QREIEKVQKEIYELADEEFNVNSPKQLGKILFEKLDLPV--IKKTKTGYSTNAQVLEVLE 572
Query: 570 PISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNI 629
P+++KI YRQ+TKL STY+ GL++ I EDG+IH+ + Q +T TGRLSS++PNLQNI
Sbjct: 573 DKHPIISKIGYYRQLTKLYSTYVEGLKNVIDEDGRIHSSFNQTVTTTGRLSSTEPNLQNI 632
Query: 630 PVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTA 689
P++ E GR +RK FVP+ +N+++LS+DYSQIELRVLAHI+ DE+LI AFK ADIHT TA
Sbjct: 633 PIKYEMGREVRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHTKTA 692
Query: 690 MRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPG 749
VF + E VT N R NAKAVNFGIVYGI DF L+ +L I RK AK YIDTYFERYP
Sbjct: 693 SEVFKVPIDE-VTVNMRGNAKAVNFGIVYGIGDFSLAKDLKISRKEAKGYIDTYFERYPN 751
Query: 750 IKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILK 809
+K YM+ + +AK YV T+ +RRR +P+I ++N ++ ER A+N+PIQGSAADI+K
Sbjct: 752 VKKYMDETIDKAKRDMYVTTILNRRRFIPEIGNKNKIVKALGERLAMNTPIQGSAADIIK 811
Query: 810 IAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIAD 869
+AM+ + VL + KSK++LQVHDE++L V +E+ I+ +V +ME+ + LSVPL D
Sbjct: 812 MAMVKVFNVLKERDLKSKIILQVHDELILNVYKDELEEIKSIVKDSMENVLPLSVPLEVD 871
Query: 870 ENAGETWYEAK 880
N GE WY+AK
Sbjct: 872 INEGENWYDAK 882
>gi|15894383|ref|NP_347732.1| DNA polymerase I, polA [Clostridium
acetobutylicum]
gi|25288530|pir||E97035 DNA polymerase I, polA [imported] -
Clostridium acetobutylicum
gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA
[Clostridium acetobutylicum]
Length = 871
Score = 631 bits (1628), Expect = e-179
Identities = 393/903 (43%), Positives = 547/903 (60%), Gaps = 62/903 (6%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+LL++DG+S+ RAF+AL N GLHTN IYGF ML + ++P +I+ FD
Sbjct: 3 RLLVLDGNSLMNRAFYAL----PELTNAEGLHTNGIYGFMTMLIKMRDEIKPDYIVTTFD 58
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
TFR + Y DYK GR K P E EQFP +++ L+ L I +E++ +EADD+IGTLA
Sbjct: 59 RKAPTFRHKEYEDYKAGRKKMPPELSEQFPVLKELLEKLAINIFEIDGFEADDLIGTLA- 117
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
A + ++ +V+GDKD +QL D N V I+KKG+ E E + ++E+ G+TP QFI
Sbjct: 118 -CFAKEKGIEVYIVTGDKDALQLADDNVKVVINKKGMTEKEIYDKNRMIEEFGVTPVQFI 176
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D+K LMGD SDNIPGV IG KT KL+ EYGS+E + +NI+ +K K+KENL N EQA
Sbjct: 177 DVKGLMGDNSDNIPGVPGIGPKTAFKLIQEYGSVENVLDNIQNIKGKKIKENLENYAEQA 236
Query: 246 FLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF---KAALGEETSQED 302
SK LATI PI I +E+I D++ + FK +L E + D
Sbjct: 237 VFSKKLATIMTNVPIEIDIEEIRSKESFDVEGARHLLRRLQFKSIIEKIPSLNVEAEKSD 296
Query: 303 FEVDFTEVEQLKT--EMFS---DNDFYY------------------FEMLGDNYHVEDLI 339
F V++ +++ E+FS D + Y F + + ++ DL
Sbjct: 297 FVVEYNLIDEFPKFHELFSAIKDTEIYMSYSIGNGELYSKIYIDTIFMKVEEKTYIVDLK 356
Query: 340 GIAWGNSDTIYATSNVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRL 399
I N + + L+E K ++K I +D K +L + I + AFDT +
Sbjct: 357 KIIEQNREDVLKD-----LKEFFENKKIAKII--HDSKNMYTVLMKNGIKIENLAFDTAI 409
Query: 400 AKYLL--STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLV 457
A+YL+ S E NL + L LD + G+ I K+V V+
Sbjct: 410 AEYLINPSKKEYNLKDAAEEM---LLLD----LTGEDNDIKI-----------KEVYVMD 451
Query: 458 DSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLT 517
+ ++K + +EL +++E PL VL+ ME G KV+KN L ++ + I +
Sbjct: 452 KIYNKLKDKIKEYDMDELYYKVELPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVK 511
Query: 518 QEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTK 577
EIY +AG+EFNI+SPKQLGK+LFE L LPV KKTKTGYST +VLE+L P++ K
Sbjct: 512 DEIYNMAGEEFNISSPKQLGKILFEKLDLPV--IKKTKTGYSTNAEVLEKLMDKHPIIEK 569
Query: 578 ILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGR 637
++ YRQ+TKL STY+ GL+ I D KIH+ + Q +T TGRLSS++PNLQNIP++ E GR
Sbjct: 570 VVYYRQLTKLYSTYVEGLKPVIDVDEKIHSSFNQTVTTTGRLSSTEPNLQNIPIKNEMGR 629
Query: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
IRK FVP DN ++LS+DYSQIELRVLAHI+ DE+LI AFK +DIHT TA VF +
Sbjct: 630 EIRKVFVPENDNCIILSADYSQIELRVLAHIADDENLINAFKHHSDIHTKTASEVFRV-P 688
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETV 757
E VT R NAKAVNFGIVYGISDF L+ ++ + +K AK+YIDTYFERYP +K Y+E +
Sbjct: 689 IEEVTSRMRSNAKAVNFGIVYGISDFSLAQDIKVSKKEAKEYIDTYFERYPNVKKYLEDI 748
Query: 758 VREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817
V AK YV T+ +RRR +P+I S N ++ F ER A+N+PIQGSAAD++K++M+N+
Sbjct: 749 VVTAKKNMYVNTIMNRRRIIPEIASSNKIVKGFGERLAMNTPIQGSAADLIKLSMVNVYS 808
Query: 818 VLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWY 877
+ + KS+++LQVHDE++L V +E+ ++ELV ME + L VPL D +G TWY
Sbjct: 809 KIKQLKLKSRLILQVHDELILNVHKDELEKVKELVKLEMEEVMELKVPLEVDIESGNTWY 868
Query: 878 EAK 880
EAK
Sbjct: 869 EAK 871
>gi|23022198|ref|ZP_00061820.1| hypothetical protein [Clostridium
thermocellum ATCC 27405]
Length = 894
Score = 629 bits (1622), Expect = e-179
Identities = 384/908 (42%), Positives = 546/908 (59%), Gaps = 45/908 (4%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILV 62
+K KL+ IDG+S+ RAF+ L + + G++TN IY F +++ + P +I V
Sbjct: 2 SKQKLMAIDGNSILNRAFYGL---PELLTTSDGIYTNGIYVFLNIMHKFIEEENPEYICV 58
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
AFD TFR Y YK R P+E R Q P +++ LD + IK E+E +EADDI+G+
Sbjct: 59 AFDLKAPTFRHNKYEGYKANRKGMPEELRVQVPLLKEVLDAMNIKRLEMEGFEADDILGS 118
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEI--SKKGVAEFEEFTPAYLMEKMGIT 180
++ AE ++ +V+GD+D QL +T +++ ++ G E EE+ ++E GI
Sbjct: 119 VSLCAEKKG--LEVILVTGDRDAFQLIGPSTRLKLPRTRGGKTEVEEYDYNKIVEVYGIK 176
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P QF+D+KAL GD SDNIPGV IGEKT L L+ EY +LE +Y +++++K+ ++E L
Sbjct: 177 PEQFVDVKALAGDTSDNIPGVPGIGEKTALALIKEYNNLENLYNSLDSIKKKGLREKLET 236
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF--KAALGEET 298
KEQAFLS+ LA I P +E+ L D + + + ++F+ F K L +
Sbjct: 237 FKEQAFLSRELALIERNMPSLCDIEE-LKRVEIDREKTYEIFKRLEFRSFIDKFGLNDVQ 295
Query: 299 SQEDFEVDF------TEVEQLKTEMFSDND---FYYFEMLGDNYHVEDLIGIAWGNSDTI 349
Q E++ +E+E LK + ++ + G I I+ +
Sbjct: 296 IQNTVELNVKIAKNASELESLKNNILKSRKVCIYHLIDKTGSFSQKLAAIAISPVEDEAW 355
Query: 350 YATSNVSLLQEALFKK----ALSKPIKTY--DFKRSKVLLNRFNIDLPEPAFDTRLAKYL 403
Y ++ ++ F++ IK Y D K V LN ID AFDT + Y+
Sbjct: 356 YLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLKNFIVYLNNRGIDFNGLAFDTMIGAYI 415
Query: 404 LSTTEDNL-VSTIARLYTNLPLDTDDAVYGKGAK---------RAIPEKTRFLEHLAKKV 453
++ +++ +S +A+ Y NL + + + GKG + + H+ KV
Sbjct: 416 INPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKDMQPDVLSKTVGVYPHVISKV 475
Query: 454 KVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513
+DS LK N QE L +++E PL LA ME G KV + L E + E Q+ I
Sbjct: 476 SRKIDS------LLKENNQERLYYDIELPLVRTLADMEYYGFKVNVDALVEFSKELQEKI 529
Query: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573
+ +T+EIY LAG+EFNINSPKQLG +LFE LGLP+ KKTKTGYST +VLE L+
Sbjct: 530 DVVTKEIYTLAGEEFNINSPKQLGVILFEKLGLPI--IKKTKTGYSTDAEVLEELSDRHE 587
Query: 574 LVTKILEYRQITKLQSTYIIGLQDYILE-DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632
+V KILEYRQ+ KL+STY GL I GKIH+ + Q +T TGR+SS++PNLQNIP++
Sbjct: 588 IVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFNQTVTATGRISSTEPNLQNIPIK 647
Query: 633 LEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRV 692
LE GR IRK F+PS++N +LL +DYSQIELRVLAHI+ DE++I AF DIHTSTA V
Sbjct: 648 LEMGRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASV 707
Query: 693 FGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752
FGI K E VTP R AKAVNFGIVYGI DF L+ +L I RK A+ YID Y +RYP +K
Sbjct: 708 FGIPK-EEVTPLMRSRAKAVNFGIVYGIGDFSLAKDLKISRKEARAYIDGYLDRYPNVKK 766
Query: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812
YM +V E K+KG+V T+F RRR LP++ SRNFNIR F ER A+N+PIQGSAADI+KIAM
Sbjct: 767 YMHDIVEEGKEKGFVTTMFMRRRYLPELKSRNFNIRSFGERVAMNTPIQGSAADIIKIAM 826
Query: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENA 872
+ + L K KS+++LQVHDE+++E +E + +++ + M++A+SL VPL+ + +
Sbjct: 827 VKVHGELKKRKLKSRLILQVHDELIVETFKDEKEEVEKILLEGMQNAVSLKVPLVVEIKS 886
Query: 873 GETWYEAK 880
G WYE K
Sbjct: 887 GSNWYETK 894
>gi|20807355|ref|NP_622526.1| DNA polymerase I - 3'-5' exonuclease
and polymerase domains [Thermoanaerobacter
tengcongensis]
gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and
polymerase domains [Thermoanaerobacter tengcongensis]
Length = 871
Score = 625 bits (1613), Expect = e-178
Identities = 373/889 (41%), Positives = 562/889 (62%), Gaps = 34/889 (3%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
K LLIDGSS+ +RA++AL + GLHTNA+YGF +ML +L +P ++ +AFD
Sbjct: 3 KFLLIDGSSLMYRAYYAL----PMLTTSEGLHTNALYGFTMMLIKLLEEEKPDYVAIAFD 58
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
TFR + + +YK R P+E EQ +++ +D IK ELE YEADDIIGT++K
Sbjct: 59 KKAPTFRHKEFKEYKATRQAMPEELSEQVELLKEVIDGFNIKTLELEGYEADDIIGTVSK 118
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
AE ++ +V+GD+D +QL V+ISKKG+ + EEF ++E+ ITP QF+
Sbjct: 119 MAEEKG--MEVVIVTGDRDALQLISPRVKVKISKKGITQMEEFDEKAVLERYEITPQQFV 176
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
DLK LMGDKSDNIPG+ IGEKT +KLL E+GS+E + ENI + K+KE + ++E A
Sbjct: 177 DLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLENISKL-SGKIKETIEANRELA 235
Query: 246 FLSKTLATINIASPITIGLEDIL-----YSGPQDIKALSQFYDEMDF--KQFKAALGEET 298
+SK LATIN P+ I E+ Y D+ +FY +D K+ + + +
Sbjct: 236 VMSKRLATINRNIPLEIDFEEYRLKEFNYKKLWDLFNKLEFYSLLDSIKKEGEEVIPTVS 295
Query: 299 SQEDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWG-NSDTIYATSNVSL 357
++ +VD EV +L + S + ++ ++ + D+ IA+ + T+Y S+V
Sbjct: 296 IRKWKKVDIREVPRL---LESAKNVAFYPLIYEG----DVKKIAFSFDGTTLY--SDVER 346
Query: 358 LQE--ALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNL-VST 414
L++ +F++ ++ + +++ K V L+ I+ DT + YLL+ +E N +
Sbjct: 347 LEDLRKIFEREDAEFV-SHEIKDFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDLER 405
Query: 415 IARLYTNLPLDTDDAVYGKGAKRAIPEKTR---FLEHLAKKVKVLVDSEANIMQQLKANE 471
+ + Y + + + + V+GKG R E+ E++ + L + + +M ++ +
Sbjct: 406 VLKRYLKVDILSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCSHLFELKDKLMAFIEEMD 465
Query: 472 QEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNIN 531
++LL E+E PL VL ME+ G + +N L E++ + + I + +IY+ AG +FN+N
Sbjct: 466 MKKLLLEIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQFNVN 525
Query: 532 SPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTY 591
SPKQLG+ LFE L LPV KKTKTGYST +VLE+L + +V++I+EYRQ+TKL+STY
Sbjct: 526 SPKQLGEFLFEKLNLPV--IKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKSTY 583
Query: 592 IIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAV 651
I G + E+ ++H+ + Q + TGR+SS++PNLQNIPVR E GR IR+AF+P +
Sbjct: 584 IEGFLPLMDENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDGY 643
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
++S+DYSQIELRVLAH+S+DE LI AF DIH TA VF + P+NVTP RR AK
Sbjct: 644 IVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKV-PPQNVTPEMRRAAKV 702
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
VNFGI+YGISD+GL+ +L I RK AK+YID YFE+Y G+K Y+E V+R AK+ GYV T+
Sbjct: 703 VNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIM 762
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQ 831
+RRR +P+INSRNF R AER A+N+PIQGSAADI+K+AM+ + + + KS+++LQ
Sbjct: 763 NRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLILQ 822
Query: 832 VHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VHDE+V++ +E+ ++E++ + ME+ I L VPL+ + G W+ AK
Sbjct: 823 VHDELVVDTYKDELELVKEILKENMENVIKLKVPLVVEIGVGPNWFLAK 871
>gi|17978836|gb|AAL47553.1| DNA polymerase [Thermoanaerobacter
yonseiensis]
Length = 871
Score = 625 bits (1613), Expect = e-178
Identities = 375/890 (42%), Positives = 562/890 (63%), Gaps = 36/890 (4%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
K LLIDGSS+ +RA++AL + GLHTNA+YGF +ML +L +P ++ +AFD
Sbjct: 3 KFLLIDGSSLMYRAYYAL----PMLTTSEGLHTNALYGFTMMLIKLLEEEKPDYVAIAFD 58
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
TFR + + +YK R P+E EQ +++ +D IK ELE YEADDIIGT++K
Sbjct: 59 KKAPTFRHKEFKEYKATRQAMPEELSEQVELLKEVIDGFNIKTLELEGYEADDIIGTVSK 118
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
AE ++ +V+GD+D +QL V+ISKKG+ + EEF ++E+ ITP QF+
Sbjct: 119 MAEEKG--MEVVIVTGDRDALQLISPRVKVKISKKGITQMEEFDEKAVLERYEITPQQFV 176
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
DLK LMGDKSDNIPG+ IGEKT +KLL E+GS+E + ENI + K+KE + ++E A
Sbjct: 177 DLKGLMGDKSDNIPGIPNIGEKTAIKLLKEFGSVENLLENISKL-SGKIKETIEANRELA 235
Query: 246 FLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL---GEE----T 298
+SK LATIN P+ I E+ + K L +++++F ++ GEE
Sbjct: 236 VMSKRLATINRNIPLEIDFEEYRLK-EFNYKKLWDLFNKLEFYSLLDSIKKEGEEVIPTV 294
Query: 299 SQEDFE-VDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWG-NSDTIYATSNVS 356
S +E VD EV +L + S + ++ ++ + D+ IA+ + T+Y S+V
Sbjct: 295 SIRKWEKVDIKEVPRL---LESAKNVAFYPLIYEG----DVKKIAFSFDGTTLY--SDVE 345
Query: 357 LLQE--ALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNL-VS 413
L++ +F++ + + +++ K V L+ I+ DT + YLL+ +E N +
Sbjct: 346 RLEDLREIFEREDCEFV-SHEIKDFLVKLSYKGIECKSKYLDTAIMAYLLNPSESNYDLD 404
Query: 414 TIARLYTNLPLDTDDAVYGKGAKRAIPEKTR---FLEHLAKKVKVLVDSEANIMQQLKAN 470
+ + Y + + + + V+GKG R E+ E++ + L + + +M ++
Sbjct: 405 RVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYICGRCNHLFELKDKLMSFIEEM 464
Query: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNI 530
+ ++LL E+E PL VL ME+ G + +N L E++ + + I + +IY+ AG +FN+
Sbjct: 465 DMKKLLLEIEMPLVEVLKSMEVDGFTLDRNVLKELSEKIDERISEILDKIYKEAGYQFNV 524
Query: 531 NSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQST 590
NSPKQLG+ LFE L LPV KKTKTGYST +VLE+L + +V++I+EYRQ+TKL+ST
Sbjct: 525 NSPKQLGEFLFEKLNLPV--IKKTKTGYSTDSEVLEQLTAYNDIVSEIIEYRQLTKLKST 582
Query: 591 YIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNA 650
YI G + E+ ++H+ + Q + TGR+SS++PNLQNIPVR E GR IR+AF+P +
Sbjct: 583 YIEGFLPLMDENDRVHSNFKQMVAATGRISSTEPNLQNIPVREEFGRQIRRAFIPRTKDG 642
Query: 651 VLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAK 710
++S+DYSQIELRVLAH+S+DE LI AF DIH TA VF + P+NVTP RR AK
Sbjct: 643 YIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKV-PPQNVTPEMRRAAK 701
Query: 711 AVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETL 770
VNFGI+YGISD+GL+ +L I RK AK+YID YFE+Y G+K Y+E V+R AK+ GYV T+
Sbjct: 702 VVNFGIIYGISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTI 761
Query: 771 FHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLL 830
+RRR +P+INSRNF R AER A+N+PIQGSAADI+K+AM+ + + + KS+++L
Sbjct: 762 MNRRRYIPEINSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLIL 821
Query: 831 QVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
QVHDE+V++ +E+ ++E++ + ME+ I L VPL+ + G W+ AK
Sbjct: 822 QVHDELVVDTYKDELELVKEILKENMENVIKLKVPLVVEIGVGPNWFLAK 871
>gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium
perfringens]
gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium
perfringens str. 13]
Length = 866
Score = 620 bits (1598), Expect = e-176
Identities = 382/893 (42%), Positives = 539/893 (59%), Gaps = 47/893 (5%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+LL++DG+S+ RAF+A + N+ G HTNAIYGF ML + ++P +I+ FD
Sbjct: 3 RLLILDGNSLLNRAFYA----VPLLSNSEGTHTNAIYGFTNMLFKMREDIKPDYIVCTFD 58
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
TFR Y DYK GR K P E EQFP +++ L + I YEL+ +EADDIIG+LAK
Sbjct: 59 KKAPTFRHLEYGDYKAGRKKMPPELAEQFPIVKEMLKLFSITTYELDGFEADDIIGSLAK 118
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
AE E ++ +++GDKD +QL + V I+KKGV+E E + ++E+ G+TP+QFI
Sbjct: 119 VAEG--EGIEVYIMTGDKDALQLAAKDINVCITKKGVSEIEVYNYDRMVEEYGVTPTQFI 176
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D+K LMGDKSDNIPGV +GEKT KL+ EYGS+E + ENI+ + K+KENL EQA
Sbjct: 177 DVKGLMGDKSDNIPGVPGVGEKTAFKLIKEYGSVEAVLENIDNISGKKLKENLTEYSEQA 236
Query: 246 FLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE-ETSQEDFE 304
SK LATI PI L++I + L + ++ K L E + + E
Sbjct: 237 IFSKKLATIMTNVPIDFDLDEIKSKDDYNKDQLKALFTKLQMKSILDKLSNGEEEEPEIE 296
Query: 305 VDFTEVEQLK--TEMFSD-NDFYY--FEMLGDNYHVEDLIGIAWGNSDT----------I 349
V T +E K ++F + N+ Y F L + I + N D +
Sbjct: 297 VKITNIENNKELEDLFKNINEEVYINFTYLNKEKYSTIEIDKIFINYDEKNYLINFKELV 356
Query: 350 YATSNVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT-- 407
N+ +E +A+ K Y K + L + ID AFD LA YL+ ++
Sbjct: 357 KEEENIKSFKEFFENEAILK--NGYSIKNALTALKKLGIDFNGLAFDCELAAYLIDSSKG 414
Query: 408 EDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQL 467
E L+S I + P + E + + + + +++
Sbjct: 415 EYTLLSLINNYLSKFP------------------NVKEGEEDLVGITFMKELTLVLKKKI 456
Query: 468 KANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQE 527
+ + E L++++E PL VL+ ME G KV K+ L+E++I+ ++ +E +EI+ELA +E
Sbjct: 457 EEEKMERLMYDIELPLETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEE 516
Query: 528 FNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKL 587
FNINSPKQLGK+LFE L LPV KKTKTGYST +VLE+L P++ KI +RQ++K+
Sbjct: 517 FNINSPKQLGKILFEKLDLPV--IKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKI 574
Query: 588 QSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSE 647
STY+ GL+ I DG IH+ + Q +T TGRLSS++PNLQNIP++ E GR IRK F+P +
Sbjct: 575 YSTYVEGLKAVIDTDGSIHSTFNQTVTTTGRLSSTEPNLQNIPIKYEMGREIRKVFIPKK 634
Query: 648 DNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRR 707
+ +L+S+DYSQIELRVLAHIS DE++I AF +DIHT TA VF + E VTP R
Sbjct: 635 EGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKV-PVEEVTPLMRS 693
Query: 708 NAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYV 767
AKAVNFGIVYGI DF LS +L I RK AK+Y+D YFERYP IK Y+ V+ EA+ KGYV
Sbjct: 694 RAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIHEAQTKGYV 753
Query: 768 ETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSK 827
T+ +RRR +P+ N+ N ++ ER A+N+PIQG+AADI+K+AM+N+ L + SK
Sbjct: 754 LTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKLKELNLNSK 813
Query: 828 MLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
++LQVHDE+++ V E+ +++L+ + ME+ I LSVPL D N GE WY K
Sbjct: 814 LILQVHDELIINVVKGELDIVKKLLKEEMENTIKLSVPLDVDVNVGEDWYRLK 866
>gi|23111782|ref|ZP_00097364.1| hypothetical protein
[Desulfitobacterium hafniense]
Length = 873
Score = 604 bits (1557), Expect = e-171
Identities = 374/897 (41%), Positives = 517/897 (56%), Gaps = 55/897 (6%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
+K+L++DG+S+A R F+AL G TN ++GF ML +L +P + +VAF
Sbjct: 2 SKILILDGNSLANRTFYAL----PMMTTADGKPTNVLHGFMTMLLRLLLEQKPDYWVVAF 57
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
D K T R E YADYK R +TPD + QF ++++ L + E YEADDII T+
Sbjct: 58 DKTKATVRIEQYADYKAQRKETPDALKPQFDFLKELLTAFAMPILECPGYEADDIIATVT 117
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
AE ++ + +GD+D +QL T V +++KG+ E + + L EK + P+Q
Sbjct: 118 SLAE--QREWETQIYTGDRDALQLISPRTTVYLTRKGITEVDAYDEGALYEKYQLRPAQI 175
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
IDLK LMGD SDNIPGV +GEKT LKLL EYGS+E + +NI+ + K++ENL N+ ++
Sbjct: 176 IDLKGLMGDASDNIPGVPGVGEKTALKLLWEYGSVENVLDNIDKISGKKLQENLRNNTDK 235
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDFE 304
A LSK LAT+ P+ I L+ ++Y P D K + D+ K E +
Sbjct: 236 ALLSKKLATMLYDIPLEIDLDRLVYRRP-DEKTFTAALDKYVLKSVARIWHEHHGAGEEG 294
Query: 305 VDFTEVEQLKT----EMFSDNDFYYFEM--------------LGDNYHVEDLI--GIAWG 344
D E LK E+ + F G N H + GIA G
Sbjct: 295 KDTPREEVLKPWPLRELTGEEWLARFPQWQADQGTLVLTCANTGGNPHWARITAWGIAVG 354
Query: 345 NSDTIYATSNVSLLQEALFKKALSK---PIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAK 401
I ++ + F + L P + D K LL I L + D LA
Sbjct: 355 GESFILNWTDAAPEVRLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAA 414
Query: 402 YLLSTTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEA 461
YL++ T + PL+ K IP F +LA++ L
Sbjct: 415 YLINPTRNKFE----------PLEL--------VKEYIPGAGEF-ANLAEEASALAQVAD 455
Query: 462 NIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIY 521
+ + L+ LL EME+PL+ +LA+ME +GI V L E E ++ L QEIY
Sbjct: 456 SYKETLEELGLSALLHEMEEPLSPILAEMEKQGIAVDVQRLQEFGRELTVELQRLEQEIY 515
Query: 522 ELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEY 581
AG+ FNINSP+QLG +LFE LGLP KKTKTGYST D LE L +V ++L+Y
Sbjct: 516 ADAGETFNINSPQQLGHILFEKLGLPP--MKKTKTGYSTDADTLEELRDQHSIVERVLDY 573
Query: 582 RQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRK 641
RQ++KL STY+ GL I E G++HT + Q +T TGRLSS++PNLQNIP+RLE GRL+RK
Sbjct: 574 RQLSKLMSTYVNGLLAQIHE-GRVHTTFQQTVTATGRLSSTEPNLQNIPIRLELGRLLRK 632
Query: 642 AFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENV 701
F P+++ VLLS+DYSQIELR+LAH S+DE L +F D+HT TA VFGI E V
Sbjct: 633 VFTPTQEGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAE-V 691
Query: 702 TPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREA 761
T + RR AKAVNFG++YG++DFGL +LG+PRK AK YI+TYF RY G+K Y+E +V +A
Sbjct: 692 TKDMRRKAKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKA 751
Query: 762 KDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDK 821
K++G V TL +R R +P++ N RQF ER A+N+PIQG+AADI+K+AM+ + L
Sbjct: 752 KEEGQVRTLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKP 811
Query: 822 GGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
Y++ +LLQVHDE+V+EV E++ + ++V + MESA LSVPLIAD G WY+
Sbjct: 812 --YRANLLLQVHDELVIEVAPEDLEEVAKVVREEMESAFPLSVPLIADCKTGPNWYD 866
>gi|6014999|sp|Q59156|DPO1_ANATH DNA polymerase I (POL I)
gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase;
DNA-directed DNA polymerase [Anaerocellum thermophilum]
Length = 850
Score = 570 bits (1470), Expect = e-161
Identities = 376/883 (42%), Positives = 527/883 (59%), Gaps = 42/883 (4%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KL++ DG+S+ +RAFFAL ++ + TNAIYGF ++ L + +P ++ VAFD
Sbjct: 2 KLVIFDGNSILYRAFFAL----PELTTSNNIPTNAIYGFVNVILKYLEQEKPDYVAVAFD 57
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
R Y +YK R PD + Q PY+R+ L I E E YEADD+IG+L
Sbjct: 58 KRGREARKSEYEEYKANRKPMPDNLQVQIPYVREILYAFNIPIIEFEGYEADDVIGSLVN 117
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEI-SKKGVAEFEE-FTPAYLMEKMGITPSQ 183
Q + N DI +++GD+D +QL D N VV+I S K E+ +T + EK G+ +Q
Sbjct: 118 QFK--NTGLDIVIITGDRDTLQLLDKNVVVKIVSTKFDKTVEDLYTVENVKEKYGVWANQ 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
D KAL+GD+SDNIPGV IGEK+ KLL EY SLE IY+N++ +K S ++E L K+
Sbjct: 176 VPDYKALVGDQSDNIPGVKGIGEKSAQKLLEEYSSLEEIYQNLDKIKSS-IREKLEAGKD 234
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALG-EETSQED 302
AFLSK LATI P+ + LED L + + + L + +++FK LG E Q +
Sbjct: 235 MAFLSKRLATIVCDLPLNVKLED-LRTKEWNKERLYEILVQLEFKSIIKRLGLSEVVQFE 293
Query: 303 F---EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQ 359
F D +VEQ + E S ++ E + S+T++ TSN L++
Sbjct: 294 FVQQRTDIPDVEQKELESISQIRSKEIPLM--FVQGEKCFYLYDQESNTVFITSNKLLIE 351
Query: 360 EALFKKALSKPIK-TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARL 418
E L S +K YD K LN + + + D +A Y+L +T + + L
Sbjct: 352 EIL----KSDTVKIMYDLKNIFHQLNLEDTNNIKNCEDVMIASYVLDSTRSSY--ELETL 405
Query: 419 YTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE 478
+ + L+TD K K L+ L ++ L+D N + L
Sbjct: 406 FVSY-LNTDIEAVKKDKKIV---SVVLLKRLWDELLRLID----------LNSCQFLYES 451
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E+PL VL +ME G KV ++ L + E + I L +IY++AG+ FNINSPKQL
Sbjct: 452 IERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWFNINSPKQLSY 511
Query: 539 LLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDY 598
+LFE L LPV KKTKTGYST +VLE L +V IL+YR TK+ +TY GL
Sbjct: 512 ILFEKLKLPV--IKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLLQA 569
Query: 599 I-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDY 657
I G++HT ++Q T TGRL+SSDPNLQNIPV+ ++G+LIRK FVP E VL+ +DY
Sbjct: 570 INPSSGRVHTTFIQTGTATGRLASSDPNLQNIPVKYDEGKLIRKVFVP-EGGHVLIDADY 628
Query: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIV 717
SQIELR+LAHIS+DE LI+AFK DIH+ TA VFG++ + VTP R AKAVNFGIV
Sbjct: 629 SQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIAD-VTPEMRSQAKAVNFGIV 687
Query: 718 YGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSL 777
YGISD+GL+ ++ I RK A ++I+ YFERYP +K Y++ V+ A+D G+V TLF+R+R +
Sbjct: 688 YGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLTLFNRKRYI 747
Query: 778 PDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIV 837
DI S N N+R +AER A+NSPIQGS ADI+K+AMI + + L + KSK++LQVHDE++
Sbjct: 748 KDIKSTNRNLRGYAERIAMNSPIQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELL 807
Query: 838 LEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
+E P EE ++E+V + ME+A+ L VPL+ + G WYE K
Sbjct: 808 IEAPYEEKDIVKEIVKREMENAVRLKVPLVVEVKEGLNWYETK 850
>gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium
roseum]
Length = 917
Score = 565 bits (1457), Expect = e-159
Identities = 354/914 (38%), Positives = 522/914 (56%), Gaps = 52/914 (5%)
Query: 2 TNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHIL 61
+ + +L+L+DG +A+RA+ AL + ++G T+ ++GF ML +L +P +++
Sbjct: 5 SRRPRLVLVDGHGLAYRAYHALPPTL---ATSAGEPTHVVFGFASMLLEVLNDFEPDYVI 61
Query: 62 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIG 121
V FD G+ +FR ++Y +YK R +TPD+ + Q IRQ LD LGI E YEADD+IG
Sbjct: 62 VCFDTGR-SFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG 120
Query: 122 TLAKQAEASNEHFDITVVSGDKDLIQLTDTNT-VVEISKKGVAEFEEFTPAYLMEKMGIT 180
TLA +A A+ ++ +V+GD DL+QL D + V+ ++ ++ + ++E+ G
Sbjct: 121 TLAARATANG--LEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFP 178
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P + + KAL+GD SDNIPGV IGEKT +L+ + SLE + + I+ ++ +++E L
Sbjct: 179 PERLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEMLDRIDEVEPPRLREALRA 238
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE---- 296
+E S+ LATI + IT+ LE + G D + + Q + E++F+ L +
Sbjct: 239 ARETVLASRRLATIVRDADITLDLEQARF-GDFDRERVLQLFRELEFRSLVPRLPQPRQP 297
Query: 297 ------ETSQEDFEVDFTEVEQLKTEMFSDNDFYY-FEMLGDNYHVEDLIGIAWGNS-DT 348
SQ + ++ L ++ + F E + DL+GIA + D
Sbjct: 298 VRKTAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDR 357
Query: 349 IY------ATSNVSLLQEALFKKA---LSKPIK---TYDFKRSKVLLNRFNIDLPEPAFD 396
Y T + L E + ++ L P K + K ++L R P FD
Sbjct: 358 SYYVPLGHTTGDTQLDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFD 417
Query: 397 TRLAKYLLSTTEDNLVSTIARLYTNLPLDTDD--AVYGKGAKRAI---PEKTRFLEHLAK 451
T +A YLL +N V +T L + ++ + G+G K+ E R ++
Sbjct: 418 TMIAAYLLG---ENAVGLKELAFTKLGWEMEEITELIGRGKKQLTMDRAEIARVTQYACA 474
Query: 452 KVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQK 511
V+ + QL+A+ Q L E+E PL +VL ME GI + L +++I
Sbjct: 475 DVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDG 534
Query: 512 VIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPI 571
+ L + IYELAG FNINSP+QL LLF+ LGLP K+TKTGYS + +VLE L
Sbjct: 535 QLHALERRIYELAGHPFNINSPQQLSTLLFDELGLP--RGKRTKTGYSVSQEVLENLRDT 592
Query: 572 SPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIP 630
P+V ILEYRQ+ KL+STY+ L + + G++HT + Q + TGRLSSSDPNLQNIP
Sbjct: 593 HPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIP 652
Query: 631 VRLEQGRLIRKAFVP--------SEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGA 682
R E G +R+AF+ +++ +LLS DYSQIELR++AH S+D L+ AF EG
Sbjct: 653 ARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGK 712
Query: 683 DIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDT 742
DIH +TA VFG+ + VTP RR AK VNFGI+YG+ +GL+ + G+ R+ A+++I+
Sbjct: 713 DIHAATASEVFGVPL-DAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEA 771
Query: 743 YFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQG 802
YF+R+PG+ Y+E R A + GYVETLF RRR LP+I S N RQ AER A+N P+QG
Sbjct: 772 YFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQG 831
Query: 803 SAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISL 862
+AADI+K+AMI + R L + G +S+MLLQVHDE+VLEVP E+ ELVT M + L
Sbjct: 832 TAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVEL 891
Query: 863 SVPLIADENAGETW 876
SVPL D AG W
Sbjct: 892 SVPLEVDAKAGPNW 905
>gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I
[Thermomicrobium roseum]
Length = 917
Score = 563 bits (1450), Expect = e-159
Identities = 353/914 (38%), Positives = 521/914 (56%), Gaps = 52/914 (5%)
Query: 2 TNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHIL 61
+ + +L+L+DG +A+RA+ AL + ++G T+ ++GF ML +L +P +++
Sbjct: 5 SRRPRLVLVDGHGLAYRAYHALPPTL---ATSAGEPTHVVFGFASMLLEVLNDFEPDYVI 61
Query: 62 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIG 121
V FD G+ +FR ++Y +YK R +TPD+ + Q IRQ LD LGI E YEADD+IG
Sbjct: 62 VCFDTGR-SFRQQLYEEYKAHRPETPDDLKHQLERIRQLLDALGIPIVTREGYEADDLIG 120
Query: 122 TLAKQAEASNEHFDITVVSGDKDLIQLTDTNT-VVEISKKGVAEFEEFTPAYLMEKMGIT 180
TLA +A A+ ++ +V+GD DL+QL D + V+ ++ ++ + ++E+ G
Sbjct: 121 TLAARATANG--LEVLIVTGDTDLLQLVDEDVRVILPGRQRFGDYRVYDRQAVIERYGFP 178
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P + + KAL+GD SDNIPGV IGEKT +L+ + SLE + + I+ ++ +++E L
Sbjct: 179 PERLPEYKALVGDPSDNIPGVPGIGEKTATRLIQRFSSLEEMLDRIDEVEPPRLREALRA 238
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE---- 296
+E S+ LATI + IT+ LE + G D + + Q + E++F+ L +
Sbjct: 239 ARETVLASRRLATIVRDADITLDLEQARF-GDFDRERVLQLFRELEFRSLVPRLPQPRQP 297
Query: 297 ------ETSQEDFEVDFTEVEQLKTEMFSDNDFYY-FEMLGDNYHVEDLIGIAWGNS-DT 348
SQ + ++ L ++ + F E + DL+GIA + D
Sbjct: 298 VRKTAAPASQRRAVLTDADLSDLVRDLETCQAFALDVETTALHPMYADLVGIALATAPDR 357
Query: 349 IY------ATSNVSLLQEALFKKA---LSKPIK---TYDFKRSKVLLNRFNIDLPEPAFD 396
Y T + L E + ++ L P K + K ++L R P FD
Sbjct: 358 SYYVPLGHTTGDTQLDIEQVLQRLAPFLRHPEKQRYAHHGKYDALVLERAGFPRPHIDFD 417
Query: 397 TRLAKYLLSTTEDNLVSTIARLYTNLPLDTDD--AVYGKGAKRAI---PEKTRFLEHLAK 451
T +A YLL +N V +T L + ++ + G+G K+ E R ++
Sbjct: 418 TMIAAYLLG---ENAVGLKELAFTKLGWEMEEITELIGRGKKQLTMDRAEIARVTQYACA 474
Query: 452 KVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQK 511
V+ + QL+A+ Q L E+E PL +VL ME GI + L +++I
Sbjct: 475 DVEATYRLVEVLRPQLEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDG 534
Query: 512 VIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPI 571
+ L + IYELAG NINSP+QL LLF+ LGLP K+TKTGYS + +VLE L
Sbjct: 535 QLHALERRIYELAGHPLNINSPQQLSTLLFDELGLP--RGKRTKTGYSVSQEVLENLRDT 592
Query: 572 SPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIP 630
P+V ILEYRQ+ KL+STY+ L + + G++HT + Q + TGRLSSSDPNLQNIP
Sbjct: 593 HPIVEAILEYRQLLKLKSTYVDALPRQVHPQTGRVHTIFHQTVAATGRLSSSDPNLQNIP 652
Query: 631 VRLEQGRLIRKAFVP--------SEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGA 682
R E G +R+AF+ +++ +LLS DYSQIELR++AH S+D L+ AF EG
Sbjct: 653 ARGELGLAVRRAFIADNRPGYRIADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGK 712
Query: 683 DIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDT 742
DIH +TA VFG+ + VTP RR AK VNFGI+YG+ +GL+ + G+ R+ A+++I+
Sbjct: 713 DIHAATASEVFGVPL-DAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEA 771
Query: 743 YFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQG 802
YF+R+PG+ Y+E R A + GYVETLF RRR LP+I S N RQ AER A+N P+QG
Sbjct: 772 YFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQG 831
Query: 803 SAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISL 862
+AADI+K+AMI + R L + G +S+MLLQVHDE+VLEVP E+ ELVT M + L
Sbjct: 832 TAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVEL 891
Query: 863 SVPLIADENAGETW 876
SVPL D AG W
Sbjct: 892 SVPLEVDAKAGPNW 905
>gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I
[Thermotoga maritima]
gi|7434817|pir||E72232 DNA-directed DNA polymerase I - Thermotoga
maritima (strain MSB8)
gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I
[Thermotoga maritima]
Length = 893
Score = 550 bits (1417), Expect = e-155
Identities = 359/902 (39%), Positives = 525/902 (57%), Gaps = 43/902 (4%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDR-FKNNSGLHTNAIYGFHLML-----NHILGRVQPSH 59
+L L DG+++A+RA++AL DR ++G+ TNA YG ML +HI+ V +
Sbjct: 3 RLFLFDGTALAYRAYYAL----DRSLSTSTGIPTNATYGVARMLVRFIKDHII--VGKDY 56
Query: 60 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDI 119
+ VAFD TFR ++ YK R KTPD +Q PYI++ ++ LG+K E+E YEADDI
Sbjct: 57 VAVAFDKKAATFRHKLLETYKAQRPKTPDLLIQQLPYIKKLVEALGMKVLEVEGYEADDI 116
Query: 120 IGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGI 179
I TLA + + +I +V+GDKD++QL + V KG+++ E + + EK G+
Sbjct: 117 IATLAVKGLPLFD--EIFIVTGDKDMLQLVNEKIKVWRIVKGISDLELYDAQKVKEKYGV 174
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
P Q DL AL GD+ DNIPGVT IGEKT ++LL +Y LE I ++ + Q K+++ L+
Sbjct: 175 EPQQIPDLLALTGDEIDNIPGVTGIGEKTAVQLLEKYKDLEDILNHVRELPQ-KVRKALL 233
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF--KAALGEE 297
D+E A LSK LA + PI I E++ Y G D + L E++F + L EE
Sbjct: 234 RDRENAILSKKLAILETNVPIEINWEELRYQG-YDREKLLPLLKELEFASIMKELQLYEE 292
Query: 298 TSQEDFEV--DFTEVEQLKTEMFSDNDFYY-FEMLGDNYHVEDLIGI--AWGNSDTIYAT 352
+ + + D E E+L ++ F E + D++GI ++ + Y
Sbjct: 293 SEPVGYRIVKDLVEFEKLIEKLRESPSFAIDLETSSLDPFDCDIVGISVSFKPKEAYYIP 352
Query: 353 SNVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLP----------EPAFDTRLAKY 402
+ Q K+ L K + + +K++ D P FDT +A Y
Sbjct: 353 LHHRNAQNLDEKEVLKKLKEILEDPGAKIVGQNLKFDYKVLMVKGVEPVPPYFDTMIAAY 412
Query: 403 LLSTTEDNL-VSTIARLYTNLPLDTDDAVYG-----KGAKRAIPEKTRFLEHLAKKVKVL 456
LL E + +A + + + + G A + + + +
Sbjct: 413 LLEPNEKKFNLDDLALKFLGYKMTSYQELMSFSFPLFGFSFADVPVEKAANYSCEDADIT 472
Query: 457 VDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETL 516
+ +L + E + +++E PL NVLA+ME+ G+ V L +++ E K +E L
Sbjct: 473 YRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEEL 532
Query: 517 TQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLV 575
+EIY +AG+ FNINSPKQ+ ++LFE LG+ K TKTG YST ++VLE LA ++
Sbjct: 533 AEEIYRIAGEPFNINSPKQVSRILFEKLGIKPR-GKTTKTGDYSTRIEVLEELAGEHEII 591
Query: 576 TKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE 634
ILEYR+I KL+STYI L + + G+IH + Q T TGRLSSSDPNLQN+P + E
Sbjct: 592 PLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTGTATGRLSSSDPNLQNLPTKSE 651
Query: 635 QGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFG 694
+G+ IRKA VP + N ++S+DYSQIELR+LAH+S DE+L+ AF+EG D+HT TA R+F
Sbjct: 652 EGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFN 711
Query: 695 IEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYM 754
+ KPE VT RR K VNF I+YG++ +GLS LG+P K A++ I YF YP +++Y+
Sbjct: 712 V-KPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAEKMIVNYFVLYPKVRDYI 770
Query: 755 ETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMIN 814
+ VV EAK+KGYV TLF R+R +P + +R+ N + ER AIN+PIQG+AADI+K+AMI
Sbjct: 771 QRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAINTPIQGTAADIIKLAMIE 830
Query: 815 LDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGE 874
+DR L + +SKM++QVHDE+V EVPNEE A+ ELV M + + LSVPL D G+
Sbjct: 831 IDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVKDRMTNVVKLSVPLEVDVTIGK 890
Query: 875 TW 876
TW
Sbjct: 891 TW 892
>gi|23056384|ref|ZP_00082413.1| hypothetical protein [Geobacter
metallireducens]
Length = 930
Score = 550 bits (1417), Expect = e-155
Identities = 362/911 (39%), Positives = 512/911 (55%), Gaps = 52/911 (5%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT K L LIDGSS +RA++A I + G TNA+YGF ML ++ +P HI
Sbjct: 39 MTGKQTLYLIDGSSYIYRAYYA----IRHLSSPKGFPTNALYGFTQMLLKVIKDRRPDHI 94
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD G+TTFRT++Y DYK R+ PD+ Q I++ + I EL YEADDII
Sbjct: 95 AVVFDVGRTTFRTDLYPDYKANRSAMPDDLVPQIAPIKEMVRAFNIPVLELAGYEADDII 154
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQL-TDTNTVVEISKKGVAEFEEFTPAYLMEKMGI 179
GT+A++ E + VV+GDKDL+Q+ ++ T+++ K+ + + + E+ G+
Sbjct: 155 GTIARECEERG--MEAVVVTGDKDLMQIVSERVTLLDTMKEKASGIPD-----VQERFGV 207
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
P ID+ L GD SDNIPGV IGEKT +KL+ E+GSL+ + E +K K E L
Sbjct: 208 GPEGVIDILGLAGDTSDNIPGVPGIGEKTAIKLIQEFGSLDTLLERAGEVK-GKTGEKLR 266
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEET- 298
+QA LS+ LATI P+ S P D + L++ E F L E
Sbjct: 267 EFADQARLSRQLATIVRDVPMAFDFAAFAASSP-DNRRLAELIKEYGFTTLMKELTSEAT 325
Query: 299 -SQEDFEVDFT--EVEQLKTEMFSDNDFYY-FEMLGDNYHVEDLIGIAWGNSD------- 347
S E + T E E L ++ + F E N +++GI+ D
Sbjct: 326 LSTEQYRTVATEEEFEALLADLKAAGTFAVDLETTSLNPLEAEIVGISLSYRDHEACYIP 385
Query: 348 --TIYATSNVSL----LQEALFKKALSKPIKTY--DFKRSKVLLNRFNIDLPEPAFDTRL 399
Y + L + +AL + I+ + K + R I+L DT +
Sbjct: 386 VGHFYLGAPEQLPRRRVLDALTPLLIDPKIRKVGQNLKYDYQVFRRHGIELGGVWCDTMV 445
Query: 400 AKYLLSTTED-NLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLV- 457
A YLL+ + + ++A + + + + + V GKG E+ F + +K
Sbjct: 446 ASYLLNPVRSGHGLDSLAVEHLDHKMISYEEVAGKGK-----EQVNFAQVPVEKASTYSC 500
Query: 458 -DSEAN------IMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQ 510
DS+A + ++ E L F++E PL +LA+ME+ G+K+ L E++
Sbjct: 501 EDSDAAWLLHRLFLPRVAVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFG 560
Query: 511 KVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAP 570
K + L I LA + FN+NSPKQLG++LFE L LP KTKTG+ST V+ LERLA
Sbjct: 561 KQLAELEGRITGLAPEPFNLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAE 620
Query: 571 IS-PLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQN 628
+ IL+YR + KL+STY L + G++HT Y Q +T TGRLSSS+PNLQN
Sbjct: 621 AGHEIAALILQYRGLAKLKSTYTDALPKLVQPATGRVHTSYNQTVTNTGRLSSSEPNLQN 680
Query: 629 IPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTST 688
IPVR E+GR IR+AF+ +E+ +LLS+DYSQIELRVLAH S+D AF + DIHT T
Sbjct: 681 IPVRTEEGRRIRRAFI-AEEGHLLLSADYSQIELRVLAHFSEDRVFCDAFAKDEDIHTRT 739
Query: 689 AMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYP 748
A VFG+ PE VTP RR AKA+NFG++YG F L+ LGI K+A+++ID YF R+P
Sbjct: 740 AAEVFGL-FPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGIATKVAREFIDNYFARHP 798
Query: 749 GIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADIL 808
G + +++ VREA++KG+V TL RR +PDI S N NIR FA+R A+N PIQGSAADI+
Sbjct: 799 GARAFLDGCVREAEEKGHVTTLLGRRLPIPDIKSANGNIRAFAQRNAVNYPIQGSAADII 858
Query: 809 KIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIA 868
K AM+ + + + S++++QVHDE+V EVP E+ A+ +LV + ME A+SL VPL
Sbjct: 859 KEAMVKVTARMRRDVVGSRLIMQVHDELVFEVPKGEVVAMEQLVRREMEHAVSLRVPLKV 918
Query: 869 DENAGETWYEA 879
D N G W EA
Sbjct: 919 DINHGGNWSEA 929
>gi|22999922|ref|ZP_00043877.1| hypothetical protein [Magnetococcus
sp. MC-1]
Length = 911
Score = 547 bits (1409), Expect = e-154
Identities = 367/935 (39%), Positives = 518/935 (55%), Gaps = 90/935 (9%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+L LIDGS +RAFF + N R G TNAI+GF ML ++ +P + +AFD
Sbjct: 5 RLFLIDGSGYLYRAFFGVRNLTRR----DGFPTNAIFGFIKMLRKVIEDEKPDFVTIAFD 60
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
TFR M A YK R PDE R Q P I +D I LE YEADDIIGT A+
Sbjct: 61 TKAPTFRHTMDAQYKANRKPMPDELRVQIPVIHDVIDAFNIPRIALEGYEADDIIGTFAR 120
Query: 126 QAEASNEHFDITVVSGDKDLIQL-TDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
A+ ++ VVSGDKDL+QL T + + SK + + P ++E G+ +
Sbjct: 121 LGCAAG--VEVVVVSGDKDLMQLITPQVKMFDGSKD-----KWYGPEDVVESWGVAAERI 173
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
DL L GD SDNIPGV IG KT +L++E+GSLEG+ E +KQ K + L+ +
Sbjct: 174 PDLLGLAGDTSDNIPGVGGIGPKTAAQLIAEFGSLEGVLHGAERIKQPKRRTALLEQADT 233
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF--------KQFKAALGE 296
A S LATIN P+ L+ P + L + Y +M F KQ + ALG
Sbjct: 234 ARRSLQLATINREVPLPFDLQGARMQRPNWAR-LREIYQDMSFATLAREAEKQLQ-ALGS 291
Query: 297 ETS--------------QEDFEVDFTE------VEQLK-TEMFSDNDFYYFEMLGDNYHV 335
E + Q +++V +E +EQLK F+ + E + H
Sbjct: 292 EAAPSIQIETQPESLPNQPNYQVITSEAAFQAFMEQLKGLPRFAVDT----ETTDLHPHS 347
Query: 336 EDLIG--IAWGNSDTIYATSNVSLLQE-----------ALFKKALSKP--------IKTY 374
+L+G IAW Y +L A K L P IK Y
Sbjct: 348 AELVGISIAWQPMVAYYIPVGHALDAAPEGQLPRADVLAALKPLLESPEIGKTGQNIK-Y 406
Query: 375 DFKRSKVLLNRFNIDLPEPAFDTRLAKYLL--STTEDNLVSTIARLYTNLPLDTDDAVYG 432
D++ + R++I + D+ L YLL + NL + + +D V G
Sbjct: 407 DYQ----IFKRYHITMQGIERDSMLYSYLLYGANRAHNLDAIATEELGRTTIKFED-VAG 461
Query: 433 KGAKRAIPEKTRFLEHLA-----KKVKVLVDSEANIMQQLKANEQEELLFE-MEQPLANV 486
KG KR ++ HLA + +V + A++ L + L+E +E+PL V
Sbjct: 462 KGRKRIRFDQVPL--HLAAPYACEDAEVTWQAAASMAPNLDREPGLKRLYETIERPLIPV 519
Query: 487 LAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGL 546
LA+ME G+ V ++ L+ M+ + K L +EI+ELAG+ FN+NS +QLG +LFE +G
Sbjct: 520 LAEMEYAGVLVDRDVLSTMSADFSKRRARLVEEIHELAGEVFNVNSTQQLGHILFEKMG- 578
Query: 547 PVEMTKKTKTGYSTAVDVLERLAPISPLV-TKILEYRQITKLQSTYIIGLQDYILE-DGK 604
++ K+TK+G+ST V VL +LA + ++L YR +TKLQSTY L I G+
Sbjct: 579 -IKGGKRTKSGFSTDVSVLSKLADDGEKIPQQVLAYRSLTKLQSTYTDALVALIHPYTGR 637
Query: 605 IHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRV 664
+HT Y Q +T TGRLSSSDPNLQNIP+R E+GR IR AF+ + LL++DYSQIELRV
Sbjct: 638 VHTSYNQAVTLTGRLSSSDPNLQNIPIRTEEGRAIRTAFI-APAGWSLLAADYSQIELRV 696
Query: 665 LAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFG 724
LAH+ L AF G DIH +TA +FG+ + VT RR AK +NFG+VYG+S FG
Sbjct: 697 LAHMGNVSRLKEAFHAGLDIHAATAAELFGVPLAQ-VTGEHRRMAKTINFGLVYGMSPFG 755
Query: 725 LSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRN 784
L+ LGI A+ Y+D YF RY G++ +M+ +R+A+ G+VETL RR + DIN+
Sbjct: 756 LAKRLGIQNNEARAYMDLYFARYDGVRQHMDATIRDARAHGFVETLGGRRCPIRDINATQ 815
Query: 785 FNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844
++R+FAERTAIN+P+QGSA+D++K+AMI L L GG+K++M+LQVHDE+VLEVP++E
Sbjct: 816 RSLREFAERTAINAPLQGSASDLIKLAMIRLHGALQAGGFKARMVLQVHDELVLEVPDKE 875
Query: 845 IGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+ A++E+V ME ++LS+PL+ D G+ W EA
Sbjct: 876 LAAVKEVVRSCMEGVMTLSIPLVVDMGVGQNWGEA 910
>gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus
marinus]
Length = 924
Score = 540 bits (1391), Expect = e-152
Identities = 355/932 (38%), Positives = 510/932 (54%), Gaps = 69/932 (7%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+L LID ++A+RA + ++ N+ G +T+A YGF L ++ ++ V FD
Sbjct: 3 RLYLIDAMALAYRAQYVFISR--PLVNSKGQNTSAAYGFTTSLLKLIEEHGMDYMAVVFD 60
Query: 66 AG--KTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
AG + TFR +Y +YK R P++ P+I++ + L I E EADD+IGTL
Sbjct: 61 AGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVIGTL 120
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A++AEA D+ +VS DKD +QL + + + F+ T E G+ P Q
Sbjct: 121 ARRAEAHG--IDVVIVSPDKDFLQLLSPHVSIYKPARRGETFDLITIETFRETYGLEPHQ 178
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
FID+ ALMGD SDN+PGV IGEKT ++L+ +YGS+E + + E +K + +E L+N +E
Sbjct: 179 FIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLNHRE 238
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF------------- 290
+A LSK L TI P+ I E + P D+ L Q + E++F
Sbjct: 239 EALLSKRLVTIRTDVPLRIRWEAFHRARP-DLPRLLQIFQELEFDSLVRRIREGGLAGIV 297
Query: 291 --KAALGEETSQE-DFEVDFTEVEQLKTEMFSDNDFYY----------------FEMLGD 331
+AAL E E + E DF E L+ D+ FE L
Sbjct: 298 NGEAALDEALEAETEPEFDFGPYEPLQVYDPEKADYRIVRNRQQLDELVAHLDGFERLAI 357
Query: 332 NYHV-------EDLIGIA--WGNSDTIY-------ATSNVSLLQE--ALFKKALSKPIKT 373
+ L+GIA W Y T ++L+ + ++A K +
Sbjct: 358 DTETTSTEAMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLAPILRRAQRKVGQ- 416
Query: 374 YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGK 433
+ K V+L R + +P P FDT +A YL++ E + + +AR Y + + + G
Sbjct: 417 -NLKYDLVVLARHGVQVPPPYFDTMVAHYLIAPEEPHNLDVLARQYLRYQMVSITELIGS 475
Query: 434 GAKRAIPEKTRFLE---HLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKM 490
G + E + + + + + +L + + EME PL VLA M
Sbjct: 476 GRDQKSMRDVSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADM 535
Query: 491 EIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEM 550
E GI + + L E+ + + + L +IYE+AG EFNI SP+QL +LF+ LGL +
Sbjct: 536 ERTGICIDRAVLREIGKQLEAELHELEVKIYEVAGVEFNIGSPQQLADVLFKKLGL--KP 593
Query: 551 TKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTR 608
+T TG ST VL+ LA PL IL++R + KL+STY+ GL+ I E G+IHT
Sbjct: 594 RARTSTGRPSTKESVLQELATQHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTT 653
Query: 609 YVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHI 668
+ Q +T TGRLSSS+PNLQNIPVR E GR IR+AFVP LLS+DY QIELR+LA +
Sbjct: 654 FNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVP-RPGWKLLSADYVQIELRILAAL 712
Query: 669 SKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHN 728
S DE L AF EG DIHT+TA RVF + PE VTP RR AK VN+GI YGIS +GL+
Sbjct: 713 SGDEALRRAFLEGQDIHTATAARVFKV-PPEQVTPEQRRRAKMVNYGIPYGISAWGLAQR 771
Query: 729 LGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIR 788
L + A++ I+ Y +PG+ Y+ VV EA+ KGYVETL RRR +P+INSRN R
Sbjct: 772 LRCSTREAQELIEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAER 831
Query: 789 QFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAI 848
AER A+N PIQG+ AD++K+AM+++ L + GY++KMLLQVHDE+V E+P EE+ +
Sbjct: 832 SMAERIAVNMPIQGTQADMIKLAMVHIYHRLKREGYRAKMLLQVHDELVFEMPPEEVEPV 891
Query: 849 RELVTKTMESAISLS-VPLIADENAGETWYEA 879
R+LV + M+ A+ L VP+ D G+ W +A
Sbjct: 892 RQLVEQEMKQALPLEGVPIEVDIGVGDNWLDA 923
>gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus
sp. ATCC 15963]
Length = 915
Score = 540 bits (1391), Expect = e-152
Identities = 342/902 (37%), Positives = 506/902 (55%), Gaps = 45/902 (4%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DG S+AFRAF+AL + FK +SG TNA+YGF ML ++L QP+H+ AFD
Sbjct: 28 LMLLDGHSLAFRAFYAL--PAENFKTHSGQATNAVYGFTSMLINLLRDEQPTHLAAAFDV 85
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
+ TFR +++ +YK RAK PDEF+ Q + L LGI E +EADD+I TL Q
Sbjct: 86 SRQTFRADLFPEYKAQRAKAPDEFKGQIDITKDVLGALGIPVMAEEGFEADDVIATLTTQ 145
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
AEA + + VV+GD+D +QL N V KKG +E FTP + EK ++P+Q+ D
Sbjct: 146 AEALG--YRVLVVTGDRDSLQLVTDNVTVLYPKKGASELTRFTPTAVEEKYSLSPAQYPD 203
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQS---KMKENLINDKE 243
AL GD SDN+PG+ +GEKT K + EYG L+G+ +N++ ++ ++ENL N
Sbjct: 204 FAALRGDPSDNLPGIPGVGEKTATKWIREYGDLQGLVDNVDKVRGKVGDSLRENLAN--- 260
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL------GEE 297
L++ L + P+ E ++ + P D + + +D+++FK + L E
Sbjct: 261 -VLLNRQLTEMVRDVPLPYTPEQLVLA-PWDREKIHALFDDLEFKVLRDRLFATLSSSEP 318
Query: 298 TSQEDFEVDFTEVEQLKTEMFSD-----NDFYYFEMLGDNY-HVEDLIGIAWGNSD---T 348
++E FEV + + D + + +LG D+ +A SD
Sbjct: 319 EAEEGFEVSDDALAPGAVAAWLDAHARTGERHGVTVLGTRTPFAGDVTALAIAASDGECA 378
Query: 349 IYATSNVSLLQEALFKKAL---SKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLS 405
A S + EA L S+P ++ K + L L DT LA YL+
Sbjct: 379 YIAASTATPEDEAALGDWLADASQPKALHEAKWAIHALRGRGWTLGGLTSDTALAAYLVR 438
Query: 406 TTEDNL-VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVL-----VDS 459
+ + + ++ Y L + + + ++ + T L+ A + +L +D
Sbjct: 439 PGQRSFNLDDLSLRYLKRELRAETS---GQEQLSLLDDTEQLDAEAAETAMLSAQAVLDL 495
Query: 460 EANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQE 519
A + +L++ E + LL +ME PL LA++E GI V L+++ +
Sbjct: 496 AAALGTELESIESKSLLSDMELPLTIELAQIEATGIVVDSAHLHDLQSRFASQVADAANS 555
Query: 520 IYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPIS--PLVTK 577
YE+ ++ N+ SPKQL +LFE L +P TKKTKTGYST + L+ L + P +
Sbjct: 556 AYEVIDKQINLGSPKQLQVVLFEELDMP--KTKKTKTGYSTDAEALQGLFDKTGHPFLEH 613
Query: 578 ILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGR 637
+L +R T+++ T + GL + EDG+IHT + Q + TGRLSS+DPNLQNIPVR + GR
Sbjct: 614 LLAHRDATRMKVT-VDGLLKAVAEDGRIHTTFNQTVAATGRLSSTDPNLQNIPVRNDAGR 672
Query: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
IR FV + VLL++DYSQIE+R++AH+S DE LI AF G D+H+ R FG+
Sbjct: 673 EIRDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGV-P 731
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETV 757
E VTP RR KA+++G+ YG+S +GL+ L I + AKQ +D YF R+ G+++Y+ V
Sbjct: 732 IEEVTPELRRRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAV 791
Query: 758 VREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817
V +A+ GY TL+ RRR LPD+NS N R+ AER A+N+PIQG+AADI+K+AMIN+ +
Sbjct: 792 VEQARKDGYTSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQK 851
Query: 818 VLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWY 877
L G KS+MLLQVHDE+VLEV E+ + LV M +AI LSVPL G +W
Sbjct: 852 ALADAGLKSRMLLQVHDELVLEVVASELEEVTALVKDKMATAIELSVPLDVSVGTGRSWD 911
Query: 878 EA 879
A
Sbjct: 912 SA 913
>gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed
Conformation Of Bacillus Dna Polymerase I Fragment Bound
To Dna And Dctp
gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed
Conformation Of Bacillus Dna Polymerase I Fragment Bound
To Dna And Dctp
Length = 580
Score = 537 bits (1383), Expect = e-151
Identities = 300/579 (51%), Positives = 399/579 (68%), Gaps = 8/579 (1%)
Query: 307 FTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEALFKKA 366
FT +++ EM +D E++ +NYH ++GIA N + + L + F
Sbjct: 5 FTLADRVTEEMLADKAALVVEVVEENYHAAPIVGIAVVNEHGRFFLRPETALADPQFVAW 64
Query: 367 L---SKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVSTIARLYTNL 422
L +K +D KR+ V L I+L +FD LA YLL + + V+ A++
Sbjct: 65 LGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYE 124
Query: 423 PLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQP 482
+ D+AVYGKGAKRA+P++ EHL +K + + E + +L+ NEQ+ LL E+EQP
Sbjct: 125 AVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQP 184
Query: 483 LANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFE 542
L+++LA+ME G+KV L +M E + + T+ Q IYELAGQEFNINSPKQLG +LFE
Sbjct: 185 LSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFE 244
Query: 543 TLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILED 602
L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTYI GL + D
Sbjct: 245 KLQLPV--LKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPD 302
Query: 603 -GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIE 661
K+HT + Q LTQTGRLSS++PNLQNIP+RLE+GR IR+AFVPSE + ++ ++DYSQIE
Sbjct: 303 TKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIE 362
Query: 662 LRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS 721
LRVLAHI++D++L+ AF+ DIHT TAM +F + + E VTPN RR AKAVNFGIVYGIS
Sbjct: 363 LRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE-VTPNMRRQAKAVNFGIVYGIS 421
Query: 722 DFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDIN 781
D+GL+ NL I RK A ++I+ YFE +PG+K YME +V+EAK KGYV TL HRRR LPDI
Sbjct: 422 DYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDIT 481
Query: 782 SRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841
SRNFN+R FAER A+N+PIQGSAADI+K AMI+L+ L + ++ +LLQVHDE++LE P
Sbjct: 482 SRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAP 541
Query: 842 NEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
EE+ + LV + ME A++L VPL D + G TWY+AK
Sbjct: 542 KEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 580
>gi|4389132|pdb|1XWL| Bacillus Stearothermophilus (Newly Identified
Strain As Yet Unnamed) Dna Polymerase Fragment
gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna
Polymerase I Fragment Complexed To 9 Base Pairs Of
Duplex Dna.
gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna
Polymerase I Fragment Product Complex With 10 Base Pairs
Of Duplex Dna Following Addition Of A Single Dttp
Residue
gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna
Polymerase I Fragment Product Complex With 11 Base Pairs
Of Duplex Dna Following Addition Of A Dttp And A Datp
Residue.
gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna
Polymerase I Fragment Product Complex With 15 Base Pairs
Of Duplex Dna Following Addition Of Dttp, Datp, Dctp,
And Dgtp Residues.
gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna
Polymerase I Fragment Product Complex With 12 Base Pairs
Of Duplex Dna Following Addition Of A Dttp, A Datp, And
A Dctp Residue
Length = 580
Score = 536 bits (1380), Expect = e-151
Identities = 300/579 (51%), Positives = 399/579 (68%), Gaps = 8/579 (1%)
Query: 307 FTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEALFKKA 366
FT +++ EM +D E++ +NYH ++GIA N + + L + F
Sbjct: 5 FTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAW 64
Query: 367 L---SKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVSTIARLYTNL 422
L +K +D KR+ V L I+L +FD LA YLL + + V+ A++
Sbjct: 65 LGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYE 124
Query: 423 PLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQP 482
+ D+AVYGKGAKRA+P++ EHL +K + + E + +L+ NEQ+ LL E+EQP
Sbjct: 125 AVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQP 184
Query: 483 LANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFE 542
L+++LA+ME G+KV L +M E + + T+ Q IYELAGQEFNINSPKQLG +LFE
Sbjct: 185 LSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFE 244
Query: 543 TLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILED 602
L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTYI GL + D
Sbjct: 245 KLQLPV--LKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPD 302
Query: 603 -GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIE 661
K+HT + Q LTQTGRLSS++PNLQNIP+RLE+GR IR+AFVPSE + ++ ++DYSQIE
Sbjct: 303 TKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIE 362
Query: 662 LRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS 721
LRVLAHI++D++L+ AF+ DIHT TAM +F + + E VTPN RR AKAVNFGIVYGIS
Sbjct: 363 LRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE-VTPNMRRQAKAVNFGIVYGIS 421
Query: 722 DFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDIN 781
D+GL+ NL I RK A ++I+ YFE +PG+K YME +V+EAK KGYV TL HRRR LPDI
Sbjct: 422 DYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDIT 481
Query: 782 SRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841
SRNFN+R FAER A+N+PIQGSAADI+K AMI+L+ L + ++ +LLQVHDE++LE P
Sbjct: 482 SRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAP 541
Query: 842 NEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
EE+ + LV + ME A++L VPL D + G TWY+AK
Sbjct: 542 KEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 580
>gi|4389065|pdb|3BDP|A Chain A, Crystal Structure Of Bacillus Dna
Polymerase I Fragment Complexed To Duplex Dna After The
Incorporation Of +ttp By The Enzyme
gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna
Polymerase I Fragment Complexed To 11 Base Pairs Of
Duplex Dna After Addition Of Two Datp Residues
gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna
Polymerase I Fragment Complexed To 9 Base Pairs Of
Duplex Dna
Length = 580
Score = 535 bits (1378), Expect = e-150
Identities = 300/579 (51%), Positives = 398/579 (67%), Gaps = 8/579 (1%)
Query: 307 FTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEALFKKA 366
FT +++ EM +D E++ +NYH ++GIA N + + L + F
Sbjct: 5 FTLADRVTEEMLADKAALVVEVVEENYHDAPIVGIAVVNEHGRFFLRPETALADPQFVAW 64
Query: 367 L---SKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVSTIARLYTNL 422
L +K +D KR+ V L I+L +FD LA YLL + + V A++
Sbjct: 65 LGDETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVRAAAKMKQYE 124
Query: 423 PLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQP 482
+ D+AVYGKGAKRA+P++ EHL +K + + E + +L+ NEQ+ LL E+EQP
Sbjct: 125 AVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRRNEQDRLLVELEQP 184
Query: 483 LANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFE 542
L+++LA+ME G+KV L +M E + + T+ Q IYELAGQEFNINSPKQLG +LFE
Sbjct: 185 LSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEFNINSPKQLGVILFE 244
Query: 543 TLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILED 602
L LPV KKTKTGYST+ DVLE+LAP +V IL YRQ+ KLQSTYI GL + D
Sbjct: 245 KLQLPV--LKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLLKVVRPD 302
Query: 603 -GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIE 661
K+HT + Q LTQTGRLSS++PNLQNIP+RLE+GR IR+AFVPSE + ++ ++DYSQIE
Sbjct: 303 TKKVHTIFNQALTQTGRLSSTEPNLQNIPIRLEEGRKIRQAFVPSESDWLIFAADYSQIE 362
Query: 662 LRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS 721
LRVLAHI++D++L+ AF+ DIHT TAM +F + + E VTPN RR AKAVNFGIVYGIS
Sbjct: 363 LRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSEDE-VTPNMRRQAKAVNFGIVYGIS 421
Query: 722 DFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDIN 781
D+GL+ NL I RK A ++I+ YFE +PG+K YME +V+EAK KGYV TL HRRR LPDI
Sbjct: 422 DYGLAQNLNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDIT 481
Query: 782 SRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841
SRNFN+R FAER A+N+PIQGSAADI+K AMI+L+ L + ++ +LLQVHDE++LE P
Sbjct: 482 SRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAP 541
Query: 842 NEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
EE+ + LV + ME A++L VPL D + G TWY+AK
Sbjct: 542 KEEMERLCRLVPEVMEQAVTLRVPLKVDYHYGSTWYDAK 580
>gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp.
'ITI 518']
Length = 924
Score = 533 bits (1374), Expect = e-150
Identities = 350/932 (37%), Positives = 505/932 (53%), Gaps = 69/932 (7%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+L LID ++A+RA + ++ N+ G +T+A YGF L ++ ++ V FD
Sbjct: 3 RLYLIDAMALAYRAHYVFISR--PLVNSKGQNTSAAYGFTTSLLKLIEEHGMDYMAVVFD 60
Query: 66 AG--KTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
AG + TFR +Y +YK R P++ P+I++ + L I E EADD+IGTL
Sbjct: 61 AGGEEGTFREAIYEEYKAHREPPPEDLLANLPWIKEIVRALDIPVIEEPGVEADDVIGTL 120
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A++AEA D+ +VS DKD +QL + + F+ T E G+ P Q
Sbjct: 121 ARRAEAHG--IDVVIVSPDKDFLQLLSPRISIYKPARRGETFDLITIETFRETYGLEPHQ 178
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
FID+ ALMGD SDN+PGV IGEKT ++L+ +YGS+E + + E +K + +E L+N +E
Sbjct: 179 FIDVLALMGDPSDNVPGVPGIGEKTAVQLIQQYGSVENLLAHAEEVKGKRAREGLLNHRE 238
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF------------- 290
+A LSK L TI P+ I E + P D+ L Q + E++F
Sbjct: 239 EALLSKRLVTIRTDVPLRIRWEAFHRARP-DLPRLLQIFQELEFDSLVRRIREGGLAGIV 297
Query: 291 --KAALGEETSQE-DFEVDFTEVEQLKTEMFSDNDFYYF--------------------- 326
+AAL E E + E DF E L+ D+
Sbjct: 298 RREAALDEALEAEGEPEFDFGPYEPLQVYDPEKADYRIVRNRQQLDELVARLDGLERLAI 357
Query: 327 --EMLGDNYHVEDLIGIA--WGNSDTIY-------ATSNVSLLQE--ALFKKALSKPIKT 373
E L+GIA W Y T ++L+ + ++A K +
Sbjct: 358 DTETTSTEAMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLERLAPILRRAQRKVGQ- 416
Query: 374 YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGK 433
+ K V+L + +++P P FDT +A YL++ E + + +AR Y + + G
Sbjct: 417 -NLKYDLVVLAQHGVEVPPPYFDTMVAHYLIAPEEPHNLDVLARQYLRYQMVAITELIGS 475
Query: 434 GAKRAIPEKTRFLE---HLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKM 490
G + E + + + + + +L + + EME PL VLA M
Sbjct: 476 GRDQKSMRDVSIDEVGPYACEDTDIALQLADVLAAELDRHGLRHIAEEMEFPLIEVLADM 535
Query: 491 EIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEM 550
E GI + + L E+ + + + L +IYE+AG EFNI SP+QL +LF+ LGL +
Sbjct: 536 ERTGICIDRTVLREIGKQLEAELHELEAKIYEVAGVEFNIGSPQQLADVLFKKLGL--KP 593
Query: 551 TKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTR 608
+T TG ST VL+ LA PL IL++R + KL+STY+ GL+ I E G+IHT
Sbjct: 594 RARTSTGRPSTKESVLQELATQHPLPGLILDWRHLAKLKSTYVDGLEPLIHPETGRIHTT 653
Query: 609 YVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHI 668
+ Q +T TGRLSSS+PNLQNIPVR E GR IR+AFVP LLS+DY QIELR+LA +
Sbjct: 654 FNQTVTATGRLSSSNPNLQNIPVRTEMGREIRRAFVP-RPGWKLLSADYVQIELRILAAL 712
Query: 669 SKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHN 728
S DE L AF EG DIHT+TA RVF + PE VTP RR AK VN+GI YGIS +GL+
Sbjct: 713 SGDEALRRAFLEGQDIHTATAARVFKV-PPEQVTPEQRRRAKMVNYGIPYGISAWGLAQR 771
Query: 729 LGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIR 788
L + A++ I+ Y +PG+ Y+ VV +A+ KGYVETL RRR +P+INSRN R
Sbjct: 772 LRCSTREAQELIEEYQRAFPGVTRYLHRVVEKARQKGYVETLLGRRRYVPNINSRNRAER 831
Query: 789 QFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAI 848
AER A+N PIQG+ AD++K+AM+++ L + GY++KMLLQVHDE+V E+P EE+ +
Sbjct: 832 SMAERIAVNMPIQGTQADMIKLAMVHIYHRLQREGYRAKMLLQVHDELVFEMPPEEVEPV 891
Query: 849 RELVTKTMESAISLS-VPLIADENAGETWYEA 879
R+LV + M+ A+ VP+ D G+ W +A
Sbjct: 892 RQLVEQEMKQALPREGVPIEVDIGVGDNWLDA 923
>gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus
erythropolis]
Length = 920
Score = 528 bits (1361), Expect = e-148
Identities = 366/942 (38%), Positives = 521/942 (54%), Gaps = 97/942 (10%)
Query: 8 LLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDAG 67
+L+DGS FRAF AL ++GLHTNAI G + ++ R QP+H+ V FD
Sbjct: 5 VLVDGSYFLFRAFHAL----PPLTTSTGLHTNAIRGAISAIQKLMRRTQPTHMAVIFDTP 60
Query: 68 KTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQA 127
+ TFR E+ YKG R P E EQ PY+ + LGI + L EADDIIGTLAK+A
Sbjct: 61 EPTFRHELSPIYKGDRPSMPTELSEQIPYLHALIRALGIPLHTLPGAEADDIIGTLAKRA 120
Query: 128 EASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFIDL 187
EA + + +GDKD+ QL +E S K + + EK G+ P+Q ID
Sbjct: 121 EAMGHQ--VLISTGDKDMAQLVTEKVTLEDSFKE----KPLDVDGVFEKFGVWPNQIIDY 174
Query: 188 KALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAFL 247
LMGD SD I GV +G KT KLL+EYGS+ GI EN++ +K K+ +N+ + L
Sbjct: 175 LTLMGDASDGIMGVPGVGAKTAAKLLTEYGSIGGILENVDKIK-GKVGQNIKEHVDGIAL 233
Query: 248 SKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK---------------QFKA 292
LA+I I + G +D+ P +I+ L Y E++F+ ++
Sbjct: 234 DHQLASIVIDLDLNFGYDDLKLGEP-NIETLRHLYTELEFRNQLQSLDHPNNPNNSNYQQ 292
Query: 293 A---------------------------LGEET-----SQEDFEVDFTEVEQLKTEMFSD 320
A LG+ T +Q+D++ F E+L TE
Sbjct: 293 AAKSINAKAVTAPEPLEDHASVTSSDDQLGQATYHTVLNQQDWDTLF---ERLSTEKRFA 349
Query: 321 NDFYYFEMLGDNYHVEDLIG--IAWGNSDTIYA--TSNVSLLQEALFKKALSKPIKT--- 373
D E +Y + ++G +A+ D Y + E L ++ + IK
Sbjct: 350 FD---TETTSLDYRIAQIVGFSVAFDAQDAYYVPLAHDYEGAPEQLNREVILAQIKPILE 406
Query: 374 --------YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPL 424
+ K +L I L FDT LA Y+L S + + +ARLY +
Sbjct: 407 DESVKKIGHHLKYDAHVLENHGIHLAGWYFDTMLASYVLYSVATRHGMDDVARLYLSHLT 466
Query: 425 DTDDAVYGKGAKRA----IPEKTRFLEHLAKKVKVLVDSEANIMQQLKAN-EQEELLFEM 479
T + V G+GAK+ IP +T + A+ V + +L+A+ E +L +
Sbjct: 467 TTYEQVAGRGAKQKTFNQIPLETA-AHYAAEDAHVTYRLYEVLSSKLQAHPELVNILHNI 525
Query: 480 EQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKL 539
E P+A VL +ME GI++ L+++ E ++ L +I E+AG+ FN++SPKQ+G++
Sbjct: 526 EVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNLENQIMEIAGESFNVSSPKQVGEV 585
Query: 540 LFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDY 598
LFE LGL + KKT TG YST+ VLE++ P+ ILEYR ++KL+STY GL
Sbjct: 586 LFEKLGL--KGGKKTTTGQYSTSESVLEKIE--HPIAQLILEYRGLSKLKSTYTDGLCKQ 641
Query: 599 ILEDG-KIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDY 657
D ++HT Y Q LT TGRLSS+DPNLQNIP+R E GR IRKAFV E VLL++DY
Sbjct: 642 ANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIRAEIGRQIRKAFVAPEGR-VLLAADY 700
Query: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIV 717
SQIELR++AH+S+DE L+ AF G D+H TA V GI E VT + RR AKAVNFG++
Sbjct: 701 SQIELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIPL-EEVTNDQRRQAKAVNFGLL 759
Query: 718 YGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSL 777
YG+S+FGL LG R+ ++ YI YF RYPGI +YM+ + A ++G+VETL RR
Sbjct: 760 YGMSEFGLIRQLGFTRQESQDYIKQYFHRYPGIYDYMQRTRQVALEQGFVETLLGRRLYT 819
Query: 778 PDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIV 837
PDI++RN +R+ AER AIN+P+QGSAADI+K+AMI +D++L K ++KMLLQVHDE+V
Sbjct: 820 PDIDARNMMVRKAAERAAINAPLQGSAADIIKMAMIEVDKMLPKD--QAKMLLQVHDELV 877
Query: 838 LEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
EV + + + + M+S + +SVPL+ + G+ W EA
Sbjct: 878 FEVDEDIADELAPKLAEVMQSVLQISVPLVVEVGKGKNWDEA 919
>gi|15608767|ref|NP_216145.1| polA [Mycobacterium tuberculosis
H37Rv]
gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium
tuberculosis CDC1551]
gi|31792815|ref|NP_855308.1| DNA polymerase I polA [Mycobacterium
bovis subsp. bovis AF2122/97]
gi|585062|sp|Q07700|DPO1_MYCTU DNA polymerase I (POL I)
gi|7434823|pir||C70559 probable polA protein - Mycobacterium
tuberculosis (strain H37RV)
gi|416117|gb|AAB46393.1| PolI
gi|2113913|emb|CAB08882.1| polA [Mycobacterium tuberculosis H37Rv]
gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium
tuberculosis CDC1551]
gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium
bovis subsp. bovis AF2122/97]
gi|740010|prf||2004291B DNA polymerase I
Length = 904
Score = 525 bits (1351), Expect = e-147
Identities = 337/905 (37%), Positives = 497/905 (54%), Gaps = 51/905 (5%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K L+L+DG+S+AFRAF+AL + FK GL TNA+YGF ML ++L P+HI A
Sbjct: 14 KPTLMLLDGNSLAFRAFYAL--PAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAA 71
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FD + TFR + Y +YK R+ TPDEF Q ++ L LGI +EADD+I TL
Sbjct: 72 FDVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATL 131
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A QAE NE + + VV+GD+D +QL + V +KGV+E FTP ++EK G+TP Q
Sbjct: 132 ATQAE--NEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQ 189
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQS---KMKENLIN 240
+ D AL GD SDN+PG+ +GEKT K ++EYGSL + +N++A++ ++ NL +
Sbjct: 190 YPDFAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLAS 249
Query: 241 DKEQAFLSKTLATINIA-SPITIGLEDILYSGPQDIKALSQFYDEMDFKQFK-------A 292
L+ + + +A +P T+ L+ P D + + +D+++F+ + A
Sbjct: 250 VVRNRELTDLVRDVPLAQTPDTLRLQ------PWDRDHIHRLFDDLEFRVLRDRLFDTLA 303
Query: 293 ALGEETSQEDFEVDF-----TEVEQLKTEMFSDNDFYYFEMLGDNY-HVEDLIGIAWGNS 346
A G E F+V V Q E D ++G + H D +A +
Sbjct: 304 AAGGPEVDEGFDVRGGALAPGTVRQWLAEHAGDGRRAGLTVVGTHLPHGGDATAMAVAAA 363
Query: 347 DTIYATSNVSLLQ------EALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLA 400
D A + + L A + +KP ++ K + L L DT LA
Sbjct: 364 DGEGAYLDTATLTPDDDAALAAWLADPAKPKALHEAKAAVHDLAGRGWTLEGVTSDTALA 423
Query: 401 KYLL-----STTEDNLVSTIAR--LYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKV 453
YL+ S T D+L R L P ++ A +T L +
Sbjct: 424 AYLVRPGQRSFTLDDLSLRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTIL-----RA 478
Query: 454 KVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513
+ ++D + +L + LL EME P+ VLAKME GI V L E+ + I
Sbjct: 479 RAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQI 538
Query: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPIS- 572
+ Y + G++ N+ SPKQL +LF+ LG+P TK+TKTGY+T D L+ L +
Sbjct: 539 RDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMP--KTKRTKTGYTTDADALQSLFDKTG 596
Query: 573 -PLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPV 631
P + +L +R +T+L+ T + GL + DG+IHT + Q + TGRLSS++PNLQNIP+
Sbjct: 597 HPFLQHLLAHRDVTRLKVT-VDGLLQAVAADGRIHTTFNQTIAATGRLSSTEPNLQNIPI 655
Query: 632 RLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMR 691
R + GR IR AFV + A L+++DYSQIE+R++AH+S DE LI AF G D+H+ A R
Sbjct: 656 RTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASR 715
Query: 692 VFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIK 751
FG+ E VT RR KA+++G+ YG+S +GLS L I + A + +D YF R+ G++
Sbjct: 716 AFGVPIDE-VTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFARFGGVR 774
Query: 752 NYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIA 811
+Y+ VV A+ GY T+ RRR LP+++S N +R+ AER A+N+PIQGSAADI+K+A
Sbjct: 775 DYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVA 834
Query: 812 MINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADEN 871
MI +D+ L++ S+MLLQVHDE++ E+ E + LV M A L VPL
Sbjct: 835 MIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMGGAYPLDVPLEVSVG 894
Query: 872 AGETW 876
G +W
Sbjct: 895 YGRSW 899
>gi|23027116|ref|ZP_00065579.1| hypothetical protein [Microbulbifer
degradans 2-40]
Length = 926
Score = 523 bits (1347), Expect = e-147
Identities = 360/939 (38%), Positives = 521/939 (55%), Gaps = 87/939 (9%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
LLL+DGSS +RAF A+ +SG T A+ G ML + S I V FDA
Sbjct: 8 LLLVDGSSYLYRAFHAM----PPLTTSSGQPTGAVRGVVNMLRKLAKDYPESPIAVIFDA 63
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR ++Y+DYK R PD+ R Q + + +G+ + EADD+IGT A+Q
Sbjct: 64 KGKTFRDDIYSDYKANRPPMPDDLRAQIEPLHTIIRAMGLPLIIQDGVEADDVIGTYAQQ 123
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
A+ + + V +GDKD+ QL + T+V + V + A + EK GI PS I
Sbjct: 124 --ATEKGIPVVVSTGDKDMAQLVSEHVTLVNTMTETVMDI-----AGVNEKFGIPPSLII 176
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYEN------IEAMKQSKMKENLI 239
D ALMGDK DNIPGV +GEKT L LL GS+E IY N +E + + L
Sbjct: 177 DFLALMGDKVDNIPGVPGVGEKTALALLQNLGSVEDIYANLDKVPTLEVRGAKSLAKKLE 236
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE--- 296
+++++AFLS LATI + + LE+++ P D AL + E++FK + L +
Sbjct: 237 DNRDKAFLSYELATIKLDVELEHSLEELIPVDP-DNDALLALFTELEFKGWVTELSKGGG 295
Query: 297 --------------------------ETSQEDFEVDFTEVE-QLKTEMFSDNDFYYF--E 327
E +++++E TE + + S + + F E
Sbjct: 296 TKAKKASPNAKQAAEEAPAAAPEEAVEINRDNYETILTEASLEAWVDRLSKAELFAFDTE 355
Query: 328 MLGDNYHVEDLIGIAW----GNSDTI-----YATSNVSLLQEALFKKALSKPIKT----- 373
NY ++G+++ G + + Y + L +E + K KP+
Sbjct: 356 TTSLNYMEAKVVGVSFAVAPGEAAYVPFGHDYLGAPEQLSEEQVLGKL--KPLLEDENVK 413
Query: 374 ---YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT---EDNLVSTIARL-YTNLPLDT 426
+ K +L I L AFDT L Y++++T D +A L +TN+
Sbjct: 414 KVGQNLKYDASVLANHGIALQGIAFDTMLESYVVNSTANRHDMDTLALAHLGHTNISF-- 471
Query: 427 DDAVYGKGAKRAIPEKTRFLE---HLAKKVKVLVDSEANIMQQLKANEQEELLFE-MEQP 482
+ + GKGAK+ + + + + A+ + + + Q++A E + LFE +E P
Sbjct: 472 -EEIAGKGAKQLTFNQIQLDQAAPYAAEDADITLRLHQALWPQVEAVEGIKSLFENVELP 530
Query: 483 LANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFE 542
L VL+K+E G + L + + E +E + +E +ELAG+EFN+ SPKQLG +LFE
Sbjct: 531 LVPVLSKVERTGALIDATILGQQSAELAADLERIQREAWELAGEEFNLASPKQLGVILFE 590
Query: 543 TLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-L 600
LG+PV KKTKTG STA +VL+ LA PL +LE R + KL+STY L I
Sbjct: 591 KLGIPV--IKKTKTGAPSTAEEVLQELALDYPLPALLLEQRGLAKLKSTYTDKLPTMINP 648
Query: 601 EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQI 660
G++HT Y Q +T TGRLSS+DPNLQNIP++ E GR +RKAF+ E + +++DYSQI
Sbjct: 649 HTGRVHTSYNQAVTATGRLSSTDPNLQNIPIKTEAGRRVRKAFIAPEGYRI-VAADYSQI 707
Query: 661 ELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGI 720
ELR++AH+S DE L AF +G D+H++TA VFG E+VTP RR+AKA+NFG++YG+
Sbjct: 708 ELRIMAHLSGDEGLTNAFNQGLDVHSATAAEVFGTSV-ESVTPEQRRSAKAINFGLIYGM 766
Query: 721 SDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDI 780
S FGL+ L I R A++YIDTYF+RYPG+ YME + AK+ GYVETL RR LP+I
Sbjct: 767 SAFGLARQLHIGRNDAQRYIDTYFDRYPGVARYMEDIRVFAKEHGYVETLMGRRLYLPEI 826
Query: 781 NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEV 840
N+ N RQ AERTAIN+P+QGSAADI+K AMI++D+ L +KM++QVHDE+VLEV
Sbjct: 827 NASNGMRRQAAERTAINAPMQGSAADIIKKAMIDVDKWLSTLKVDAKMIMQVHDELVLEV 886
Query: 841 PNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
++I + + M +A+ L VPL+ + G W EA
Sbjct: 887 AEDQIEPVTATLCDIMSAALKLDVPLLVEAGVGMNWDEA 925
>gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira
interrogans serovar lai str. 56601]
gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira
interrogans serovar lai str. 56601]
Length = 917
Score = 516 bits (1329), Expect = e-145
Identities = 346/923 (37%), Positives = 514/923 (55%), Gaps = 58/923 (6%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+LL+IDG + FRA++A + + + +G + A +GF ML ++ PSHI + FD
Sbjct: 3 RLLIIDGHAFVFRAYYA-FGASNLTNSKTGKPSGATFGFFKMLFKLIQDYTPSHIAMTFD 61
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
G T R +++ DYK R P++ R Q + L+ +G K ++E EADD+IGTL +
Sbjct: 62 PGGTLERGKIFQDYKANRKPMPEDLRPQIQEVMDTLEKIGFKILKVEGQEADDVIGTLCE 121
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEI-SKKGVAEFEEFTPAYLMEKMGITPSQF 184
++ + +I + SGDKDL QL + + + KKGV EF E A++ E++G+ Q
Sbjct: 122 TYRSTAK--EILIFSGDKDLYQLLEKKNIKMLRGKKGVTEFVEIDSAWVKEELGVDVKQI 179
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
D ++GD SDNIPGV IG+K KLL EY SL+G+Y+N+E +K +K L KE
Sbjct: 180 PDYMGIVGDTSDNIPGVKGIGDKGASKLLQEYKSLDGVYKNLEKIKNPGLKTKLSEQKEN 239
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDIKAL----SQFYDEMDFKQFKAALGEETSQ 300
A+LSK LATI + I +DI + A+ SQ Y+ + K+A E
Sbjct: 240 AYLSKQLATIRRDLQLGITEKDIEIPDYKSDAAILYFKSQGYNVLSKDLAKSAGKEVPKD 299
Query: 301 EDFEVDFTE------VEQLKTEMFSDNDFYY---------------FEMLGDNYHVEDLI 339
+ D +E E+ ++ S D E N + +L+
Sbjct: 300 PEPAADSSENVTIPTAEKGSYKLISSIDELSKICRGLLKSRVLSVDTETTSPNPAMAELV 359
Query: 340 GIAWGNSDT----IYATSNVSLLQEALFK---------KALSK--PIKTYDFKRSKVLLN 384
GI++ N + + +N SL Q+ LS P + K ++L
Sbjct: 360 GISFSNQEKTGFYVSVKNNASLFQDKSLNLDEVREHLGPVLSSQVPKVGQNIKYDLIVLE 419
Query: 385 RFNIDLPEPAFDTRLAKYLLSTT-EDNLVSTIARLYTNLPLDTDDAVYGKGAKRA----- 438
L FDT LA Y+L + + +A+ + N T + + G G K+
Sbjct: 420 NHGFVLNNIQFDTMLASYVLRPEGRRHNMDDLAKEFLNYNTITYEDLVGTGKKKKELTDI 479
Query: 439 IPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVK 498
PE+ E+ A+ V + +K + E +L EME PL +VLAKME GI +
Sbjct: 480 DPEQVA--EYAAEDADVTFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALD 537
Query: 499 KNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGY 558
E+A + + I L EI+ AG FNI S K+L K+LF+ L L + KKT+TG+
Sbjct: 538 VPYFEELARDFDREIRHLESEIHRQAGGPFNIASTKELQKILFDNLKL--RIVKKTQTGF 595
Query: 559 STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTG 617
ST +VLE L P++ K+L+YR+ TKL+STY+ L + + G+IHT Y Q + TG
Sbjct: 596 STDHEVLEELVGEHPIIEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAATG 655
Query: 618 RLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAA 677
RLSS+DPNLQNIP+R +GRL+RK F ++ +LS DYSQIELR++AHISKD ++ A
Sbjct: 656 RLSSTDPNLQNIPIRDREGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHISKDPAMLEA 715
Query: 678 FKEGADIHTSTAMRVFGIEKPE-NVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLA 736
+ G DIH TA ++G+ PE +VT R AK VNF ++YG++ +GLS NL IPR A
Sbjct: 716 YNHGLDIHKRTAAALYGV--PETDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLRIPRDEA 773
Query: 737 KQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAI 796
K +I+ Y +YPG+K+YM+++V A+ GYV+TL RRR + DINS + + ++ A+R AI
Sbjct: 774 KSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKSAKEAAKRIAI 833
Query: 797 NSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTM 856
NSPIQG++AD++KIAMI + ++K YKS+MLLQVHDE+V EV +E + + K M
Sbjct: 834 NSPIQGTSADMIKIAMIKIHEDIEKKHYKSRMLLQVHDELVFEVHKKEKDDFKASMKKHM 893
Query: 857 ESAISLSVPLIADENAGETWYEA 879
E+A+SL +P++ + G W EA
Sbjct: 894 ETAMSLDLPIVVEGKFGVNWDEA 916
>gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces
coelicolor A3(2)]
gi|7479233|pir||T35748 DNA polymerase I - Streptomyces coelicolor
gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces
coelicolor A3(2)]
Length = 907
Score = 516 bits (1328), Expect = e-145
Identities = 342/907 (37%), Positives = 493/907 (53%), Gaps = 52/907 (5%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+L+L+DG S+A+RAFFAL + F +G TNAIYGF ML + L P+H VAFD
Sbjct: 18 RLMLMDGHSLAYRAFFAL--PAENFTTATGQPTNAIYGFASMLANTLRDEAPTHFAVAFD 75
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
+ T+R+E + +YK R+KTPDEF+ Q I + LD + + + +E +EADD+I TLA
Sbjct: 76 VSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDSMHVPRFAVEGFEADDVIATLAT 135
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
+AEA E FD+ +V+GD+D QL +T V KGV+E FTP + EK G+TP+Q+
Sbjct: 136 EAEA--EGFDVLIVTGDRDSFQLVSEHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYP 193
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D AL GD SDN+PG+ +GEKT K ++++GS + E ++ +K K +NL + E
Sbjct: 194 DFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVK-GKAGQNLRDHLESV 252
Query: 246 FLSKTLATIN--IASPITI-GLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQED 302
L++ L + + P T+ LE Y D K ++ D ++ + +L E
Sbjct: 253 KLNRRLTELERRVELPRTVTDLERTAY----DRKGVAVILDTLEIRN--PSLRERL---- 302
Query: 303 FEVDFTEVEQLKTEMFSDNDFYYFEMLGDN-------YHVEDLIGIA----W-------- 343
+ VD E T + +D +LG H +G+A W
Sbjct: 303 YAVDPGAEEAEATPVVADGVELDGTVLGTGELAGWLAEHGAQPLGVATVDTWALGTGSVT 362
Query: 344 ----GNSDTIYATSNVSLLQEA---LFKKALSKPIKTYDFKRSK---VLLNRFNIDLPEP 393
SD A + + L EA F+ LS P + F +K +L +
Sbjct: 363 EVALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHNAKGAMRVLAEHGWSVAGV 422
Query: 394 AFDTRLAKYLLSTTEDNL-VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKK 452
DT LA YL+ + + ++ Y + L A G+ A A ++ E L +
Sbjct: 423 GMDTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAAADGQLAFGA--DEGAEAEVLMVQ 480
Query: 453 VKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKV 512
+ ++D +L +LL +ME P + +LA+ME GI + L M
Sbjct: 481 ARAILDLGETFESRLADVGAADLLRDMELPTSALLARMERHGIAADREHLQAMEQMFAGA 540
Query: 513 IETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPIS 572
++ +E + AG+EFN+ SPKQL ++LF L LP KT +
Sbjct: 541 VQQAVKEAHAAAGREFNLGSPKQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDN 600
Query: 573 PLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632
L +L +R+ KL+ T + GL I DG+IHT + Q + TGRLSS+DPNLQNIPVR
Sbjct: 601 ELPVIMLRHREQAKLRVT-VEGLIKTIAADGRIHTTFNQTVAATGRLSSTDPNLQNIPVR 659
Query: 633 LEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRV 692
++GR IR+ FV E L+++DYSQIELRV+AH+S+D L AF G D+HT+ A +V
Sbjct: 660 TDEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQV 719
Query: 693 FGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752
F +E+ V RR KA+++G+ YG+S FGLS L I A+ +D YFER+ G+++
Sbjct: 720 FSVEQSA-VDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARGLMDAYFERFGGVRD 778
Query: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812
Y+ VV EA+ GY TLF RRR LPD+NS N R+ AER A+N+PIQG+AADI+KIAM
Sbjct: 779 YLRRVVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAM 838
Query: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENA 872
+N+D+ L + KS+MLLQVHDEIVLE+ E A ELV + M +A+ L VPL A
Sbjct: 839 LNVDKALREADLKSRMLLQVHDEIVLEIAPGERAAAEELVRREMANAVQLRVPLGVSVGA 898
Query: 873 GETWYEA 879
G W A
Sbjct: 899 GPDWESA 905
>gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus
influenzae Rd]
gi|1169402|sp|P43741|DPO1_HAEIN DNA polymerase I (POL I)
gi|1074025|pir||E64098 DNA-directed DNA polymerase (EC 2.7.7.7) I -
Haemophilus influenzae (strain Rd KW20)
gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus
influenzae Rd]
Length = 930
Score = 515 bits (1327), Expect = e-144
Identities = 358/946 (37%), Positives = 515/946 (53%), Gaps = 94/946 (9%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
N L+L+DGSS +RAF A N +G T+A+YG ML ++ +VQP+HI V F
Sbjct: 7 NPLVLVDGSSYLYRAFHAF----PSLTNAAGEPTSAMYGVLNMLKSLISQVQPTHIAVVF 62
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR EM+ YK R PD+ R+Q + + LGI +E EADD+IGTLA
Sbjct: 63 DAKGKTFRDEMFEQYKSHRPPMPDDLRKQIQPLHDMIRALGIPLLVVEGIEADDVIGTLA 122
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVV-------EISKKGVAEFEEFTPAYLMEKM 177
QA + + + + +GDKD+ QL D N ++ + +KGV +EK
Sbjct: 123 LQASSLGK--KVLISTGDKDMAQLVDDNIMLINTMNNSLLDRKGV-----------IEKY 169
Query: 178 GITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQ------ 231
GI P ID ALMGD +DNIPGV +GEKT L LL GS+ IY N+E + +
Sbjct: 170 GIPPELIIDYLALMGDSADNIPGVAGVGEKTALGLLQGIGSMAEIYANLEKVAELPIRGA 229
Query: 232 SKMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK--- 288
K+ E L+ +K A LS TLATI + + + +L G L +++ +FK
Sbjct: 230 KKLGEKLLAEKNNADLSYTLATIKTDVELNVTTDQLLL-GESQKDQLIEYFARYEFKRWL 288
Query: 289 ---------------------QFKAALGEETSQED---FEVDFTEVEQLKT--------E 316
Q+KA ++++ E+ ++D T+ E L T E
Sbjct: 289 NEVMNGADSITQTTEQPVKMNQYKATSQDQSAVENTPKIQIDRTKYETLLTQADLTRWIE 348
Query: 317 MFSDNDFYYFEMLGD--NYHVEDLIGIAWG--NSDTIYATSNVSLLQ-----EALFKKAL 367
+ + D +Y +L+GI++ N + Y + L E A
Sbjct: 349 KLNAAKLIAVDTETDSLDYMSANLVGISFALENGEAAYLPLQLDYLDAPKTLEKSTALAA 408
Query: 368 SKPIKT--------YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLY 419
KPI + K + + R I+L FDT L Y L++T + + +A+ Y
Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARHGIELQGVEFDTMLLSYTLNSTGRHNMDDLAKRY 468
Query: 420 TNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQE-----E 474
+++ GKG K + LE + D + Q L QE E
Sbjct: 469 LGHETIAFESLAGKG-KSQLTFNQIPLEQATEYAAEDADVTMKLQQALWLKLQEEPTLVE 527
Query: 475 LLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPK 534
L ME PL +VL++ME G+ + + L + E + L ++ Y LAGQ FN+ S K
Sbjct: 528 LYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAYALAGQPFNLASTK 587
Query: 535 QLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIG 594
QL ++LF+ L LPV + K K ST +VLE L+ L ++++R ++KL+STY
Sbjct: 588 QLQEILFDKLELPV-LQKTPKGAPSTNEEVLEELSYSHELPKILVKHRGLSKLKSTYTDK 646
Query: 595 LQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLL 653
L + + G++HT Y Q +T TGRLSSSDPNLQNIP+R E+GR IR+AF+ E ++ +
Sbjct: 647 LPQMVNSQTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRHIRQAFIAREGYSI-V 705
Query: 654 SSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVN 713
++DYSQIELR++AH+S D+ LI AF +G DIH STA +FG+ E VT RRNAKA+N
Sbjct: 706 AADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE-VTSEQRRNAKAIN 764
Query: 714 FGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHR 773
FG++YG+S FGLS LGI R A++Y+D YF+RYP ++ +M + +AK +GYVETLF R
Sbjct: 765 FGLIYGMSAFGLSRQLGISRADAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGR 824
Query: 774 RRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVH 833
R LPDINS N R+ AER AIN+P+QG+AADI+K AMI LD V+ + +M++QVH
Sbjct: 825 RLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKLDEVI-RHDPDIEMIMQVH 883
Query: 834 DEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
DE+V EV +E++ RE + + ME+A L VPLI + G+ W EA
Sbjct: 884 DELVFEVRSEKVAFFREQIKQHMEAAAELVVPLIVEVGVGQNWDEA 929
>gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I
[Acinetobacter calcoaceticus]
Length = 923
Score = 510 bits (1313), Expect = e-143
Identities = 346/938 (36%), Positives = 514/938 (53%), Gaps = 86/938 (9%)
Query: 8 LLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDAG 67
+L+DGS FRA+ AL ++GLHTNAI G + ++ R+QP+H+ V FD
Sbjct: 5 VLVDGSYFLFRAYHAL----PPLTTSTGLHTNAIRGAISAIQKLMRRMQPTHMAVIFDTP 60
Query: 68 KTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQA 127
+ TFR ++ YKG R P+E +Q PY+ + GI Y L EADDIIGTLAK+A
Sbjct: 61 EPTFRHKLSPIYKGDRPSMPEELSQQIPYLHALIKAQGIPLYSLPGAEADDIIGTLAKRA 120
Query: 128 EASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFIDL 187
H + + +GDKD+ QL + + +E S K + EK G+ P+Q ID
Sbjct: 121 VLEGHH--VLISTGDKDMAQLVNDHVKLEDSFKD----RVMDTDGVFEKFGVWPNQIIDY 174
Query: 188 KALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAFL 247
LMGD SD I GV +G KT KLL+EYG+L+ I N + +K K+ +N+ ++ + L
Sbjct: 175 LTLMGDASDGIMGVPGVGAKTAAKLLTEYGTLDNIIANADQLK-GKISQNIKDNLDNIKL 233
Query: 248 SKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL-----------GE 296
LA+I P+ + ++ P ++ AL Y E++F+ +L +
Sbjct: 234 DHQLASIVCDLPLELDWHELKLIDP-NVDALRNLYTELEFRNQLQSLEHPNNPNSSSYKQ 292
Query: 297 ETSQEDFEVDFTEVEQLKTE----MFSDND-----FYY---------------------- 325
+ SQ + D E ++TE + S +D Y+
Sbjct: 293 QASQTVVQNDVKPTESIETEDQASLTSQDDQLGTANYHTVLTQEAWDQLLQRMQNADHFA 352
Query: 326 --FEMLGDNYHVEDLIG--IAWGNSDTIYA--TSNVSLLQEALFKKALSKPIKT------ 373
E +Y + +++G IA+ D Y N + L ++ + IK
Sbjct: 353 IDIETTSLDYRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQLNREQILAQIKPVLENEA 412
Query: 374 -----YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTED-NLVSTIARLYTNLPLDTD 427
+ K + I+L FDT LA Y+L+ + + +AR+Y + T
Sbjct: 413 VKKIGHHLKYDAHIFANHGIELKGWYFDTMLASYVLNAAATRHGMDDVARVYLSHLTTTF 472
Query: 428 DAVYGKGAKRAIPEKTRF---LEHLAKKVKVLVDSEANIMQQLKA-NEQEELLFEMEQPL 483
+ + GKGAK+ + + A+ V + +LK E E +L+ +E P+
Sbjct: 473 EQIAGKGAKQKTFNQIEIEVAAHYAAEDAHVTYRLYEVLSNKLKPFPELENILYNIEMPV 532
Query: 484 ANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFET 543
A +L+ ME GI++ L+ +++E K E L + E+A + FNI SPKQ+G++LF+
Sbjct: 533 ARILSGMEEDGIRLDHAFLDNLSVEFAKTREGLENQAMEIADETFNIASPKQVGEILFDK 592
Query: 544 LGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILED 602
LG ++ KKT TG YST+ VLE++ PL ILE+R + KL+STY L + D
Sbjct: 593 LG--IKGGKKTATGQYSTSESVLEKIE--HPLAEIILEHRGLAKLKSTYTDRLVEQSHND 648
Query: 603 G-KIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIE 661
++HT Y Q LT TGRLSSSDPNLQNIP+R + GR IRKAF+ E VLL++DYSQIE
Sbjct: 649 THRVHTSYHQALTATGRLSSSDPNLQNIPIRRQIGRQIRKAFIAPEGR-VLLAADYSQIE 707
Query: 662 LRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGIS 721
LR++AH S+D+ L+ AF+ G D+H TA V GI E+VT + RR AKAVNFG++YG+S
Sbjct: 708 LRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGI-AIEDVTNDQRRQAKAVNFGLLYGMS 766
Query: 722 DFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDIN 781
+FGL LG R+ ++ YI YF+RYPGI YM+ + A ++G+VET+ RR PDI+
Sbjct: 767 EFGLIRQLGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDID 826
Query: 782 SRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVP 841
+RN +R+ AER AIN+P+QGSAADI+K+AMI +D+VL K ++K+LLQVHDE+V E
Sbjct: 827 ARNVMVRKAAERAAINAPLQGSAADIIKLAMIEVDKVLPKD--QAKLLLQVHDELVFEAD 884
Query: 842 NEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+ + + K MES + +SVPL+ + G W +A
Sbjct: 885 QNIAEELSKQIAKVMESVVEISVPLVVEVGQGLNWDDA 922
>gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus
CMCP6]
gi|27360467|gb|AAO09403.1|AE016800_8 DNA polymerase I [Vibrio
vulnificus CMCP6]
Length = 931
Score = 509 bits (1310), Expect = e-142
Identities = 347/941 (36%), Positives = 515/941 (53%), Gaps = 81/941 (8%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+LIDGSS +RAF A + +N + TNA+YG ML ++ + I V
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTM----SNGDIPTNAVYGVVNMLRSMMRQFASDRIAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR +MY +YK R PD+ R Q + Q + +G+ +E EADD+IGTL
Sbjct: 62 FDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHQVIKAMGLPLIAIEGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A Q AS + + + +GDKD+ QL D N T++ V + E ++EK GI P
Sbjct: 122 AYQ--ASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREG-----VIEKFGIPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIE-----AMKQSK-MKE 236
ID ALMGDK DNIPGV +G+KT LL G L +Y++++ + + SK M +
Sbjct: 175 LIIDYLALMGDKVDNIPGVPGVGDKTATALLQGIGGLSQLYDHLDDIAALSFRGSKTMAK 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL-- 294
L+++K+ A LS LATI + + E +L + P L + Y ++ FK + L
Sbjct: 235 KLVDNKDNALLSYQLATIKLDVALQETPESLLKTEPNK-DELIKLYGQLAFKSWLNELLE 293
Query: 295 -------GEETSQEDFEVDFTEVE-------------QLKT-----------EMFSDNDF 323
+E +Q + VE Q +T + ++
Sbjct: 294 GGTGVVEADEKAQTSVRSGASPVESEINNAAANIDRSQYQTIFDQATFDIWLDKLKASEL 353
Query: 324 YYFEMLGD--NYHVEDLIGIAWGNSDTIYATSNVS---------------LLQEALFKKA 366
+ F+ D +Y V +L+G+++ ++ A V+ L Q +
Sbjct: 354 FAFDTETDSLDYMVANLVGLSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLED 413
Query: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLD 425
+K + K +L R+ I++ DT LA Y+ S + + ++A +
Sbjct: 414 DTKAKVGQNLKYDASVLARYGIEMKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCI 473
Query: 426 TDDAVYGKGAKRAIPEKTRFLE---HLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQ 481
+ + + GKG + + E + A+ V + + ++ +E+ ++ E+E
Sbjct: 474 SFEQLAGKGKNQLTFNQIDLNEAAVYAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEV 533
Query: 482 PLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLF 541
PL VL++ME G+ + L+ + E + L Q+ YE+AGQ FN+NSPKQL +LF
Sbjct: 534 PLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIAGQPFNMNSPKQLQTILF 593
Query: 542 ETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI- 599
E +GLPV KKT +G STA +VL+ LA PL + I+EYR + KL+STY L I
Sbjct: 594 EQMGLPV--IKKTPSGTPSTAEEVLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMIN 651
Query: 600 LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQ 659
G++HT Y Q +T TGRLSS+DPNLQNIP+R E+GR IR+AFV + L+ DYSQ
Sbjct: 652 PHTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPHGYKI-LAVDYSQ 710
Query: 660 IELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG 719
IELR++AH+S D+ L+ AF++G DIH +TA + G+ E V+ RR AKAVNFG++YG
Sbjct: 711 IELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSI-EQVSSEQRRRAKAVNFGLIYG 769
Query: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPD 779
+S FGL+ LGIPR A+ Y+D YFERYPG+ YME A GYVET+F RR LP+
Sbjct: 770 MSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSNAAQHGYVETIFGRRLHLPE 829
Query: 780 INSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR-VLDKGGYKSKMLLQVHDEIVL 838
I SRN R+ AER AIN+P+QG+AADI+K AM+ +D+ + ++G + K+L+QVHDE+V
Sbjct: 830 ITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVF 889
Query: 839 EVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
EV + I V + MESA L+VPL+A+ G+ W +A
Sbjct: 890 EVEESCLTEIESKVQQLMESAAQLNVPLVAEAGHGDNWDQA 930
>gi|1097211|prf||2113329A DNA polymerase
Length = 834
Score = 508 bits (1309), Expect = e-142
Identities = 335/880 (38%), Positives = 490/880 (55%), Gaps = 60/880 (6%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R FFAL + G A+YGF L L + V
Sbjct: 11 KGRVLLVDGHHLAYRTFFALKG----LTTSRGEPVQAVYGFAKSLLKALKEDGYKAVFVV 66
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG E+ YEADD++ TL
Sbjct: 67 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATL 126
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK+AE E +++ +++ D+DL QL ++ V + KG TP +L EK G+ P Q
Sbjct: 127 AKKAE--KEGYEVRILTADRDLYQLV-SDRVAVLHPKG----HLITPEWLWEKYGLRPEQ 179
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
++D +AL+GD SDN+PGV IGEKT LKLL E+GSLE + +N++ +K ++E + E
Sbjct: 180 WVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLE 239
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
LS L+ + P+ + D+ D + L F + ++F G +
Sbjct: 240 DLRLSLELSRVRTDLPLEV---DLAQGREPDREGLRAFLERLEFGSLLHEFGLLEAPAPL 296
Query: 304 EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIY-ATSNVSLLQEAL 362
E E E F F + +L +A ++ A ++ L++
Sbjct: 297 E----EAPWPPPE----GAFVGFVLSRPEPMWAELKALAACRDGRVHRAADPLAGLKDL- 347
Query: 363 FKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNL 422
K ++ K VL +R +DL P D L YLL + + +AR Y
Sbjct: 348 ------KEVRGLLAKDLAVLASREGLDLV-PGDDPMLLAYLLDPS-NTTPEGVARRYGGE 399
Query: 423 PLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQP 482
T+DA A RA+ E L + + ++ E ++ L E+E+P
Sbjct: 400 W--TEDA-----AHRAL-----LSERLHRNLLKRLEGEEKLLW---------LYHEVEKP 438
Query: 483 LANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFE 542
L+ VLA ME G++ L +++E + I L +E++ LAG FN+NS QL ++LF+
Sbjct: 439 LSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFD 498
Query: 543 TLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL- 600
L LP + K KTG ST+ VLE L P+V KIL++R++TKL++TY+ L +
Sbjct: 499 ELRLPA-LGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHP 557
Query: 601 EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQI 660
G++HTR+ Q T TGRLSSSDPNLQNIPVR G+ IR+AFV +E L++ DYSQI
Sbjct: 558 RTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFV-AEAGWALVALDYSQI 616
Query: 661 ELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGI 720
ELRVLAH+S DE+LI F+EG DIHT TA +FG+ PE V P RR AK VNFG++YG+
Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGV-PPEAVDPLMRRAAKTVNFGVLYGM 675
Query: 721 SDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDI 780
S LS L IP + A +I+ YF+ +P ++ ++E + E + +GYVETLF RRR +PD+
Sbjct: 676 SAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDL 735
Query: 781 NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEV 840
N+R ++R+ AER A N P+QG+AAD++K+AM+ L L + G ++MLLQVHDE++LE
Sbjct: 736 NARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLREMG--ARMLLQVHDELLLEA 793
Query: 841 PNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
P + L + ME A L+VPL + GE W AK
Sbjct: 794 PQARAEEVAALAKEAMEKAYPLAVPLEVEVGMGEDWLSAK 833
>gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio
parahaemolyticus RIMD 2210633]
gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio
parahaemolyticus]
Length = 931
Score = 508 bits (1308), Expect = e-142
Identities = 359/944 (38%), Positives = 517/944 (54%), Gaps = 87/944 (9%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+LIDGSS +RAF A + +N + TNA+YG ML ++ + I V
Sbjct: 6 ENPLILIDGSSYLYRAFHAYPGTM----SNGEIPTNAVYGVVNMLRSMMRQFASERIAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR EMY++YK R PD+ R Q + + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDEMYSEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A Q AS + + + +GDKD+ QL D N T++ V + E ++EK GI P
Sbjct: 122 AYQ--ASQQGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREG-----VVEKFGIPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIE-----AMKQSK-MKE 236
ID ALMGDK DNIPGV +G+KT LL G L +YEN++ + SK M +
Sbjct: 175 LIIDYLALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAK 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296
L+++K+ A LS LATI + + E +L + P L + Y ++ FK + L E
Sbjct: 235 KLVDNKDNAMLSYELATIKLDVELEETPESLLKAEPNK-DELIKLYGQLTFKSWLNELLE 293
Query: 297 ETS--------------------QEDFEVDFTEVEQLKTEMFSDN-------------DF 323
S + E +++ + E D +
Sbjct: 294 GGSGTVEAVELAGSAQASSSSSSHAEMETSAVTIDRSQYETILDEASFNAWLEKLKAAEL 353
Query: 324 YYFEMLGD--NYHVEDLIGIAWGNSDTIYATSNVS---------LLQEALFKKALSKPIK 372
+ F+ D +Y V +L+G+++ + I A V+ L ++ + ++ KPI
Sbjct: 354 FAFDTETDSLDYMVANLVGLSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQL--KPIL 411
Query: 373 TYD--------FKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLP 423
D K +L R+ I++ +DT LA Y+ S + + ++A +
Sbjct: 412 EDDAQAKVGQNLKYDASVLARYGIEMKGIKYDTMLASYVYNSVGGKHDMDSLALRFLQHS 471
Query: 424 LDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKAN-EQEELLF----E 478
+ + + GKG + + LE + D + +L AN EQ+E L E
Sbjct: 472 CISFEQIAGKGKNQLTFNQIE-LEQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEE 530
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E PL VL+++E G+ + L+ ++E +E L Q+ YE+A QEFN+NSPKQL
Sbjct: 531 IEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEFNMNSPKQLQA 590
Query: 539 LLFETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQD 597
+LFE +GLPV KKT +G ST +VL+ LA PL ILEYR + KL+STY L
Sbjct: 591 ILFEKMGLPV--VKKTPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPK 648
Query: 598 YI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSD 656
I G++HT Y Q +T TGRLSS+DPNLQNIP+R E+GR IR+AFV V L+ D
Sbjct: 649 MINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAPAGYKV-LAVD 707
Query: 657 YSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGI 716
YSQIELR++AH+S D+ L+ AF++G DIH +TA + G+ + V+ RR AKAVNFG+
Sbjct: 708 YSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSI-DQVSSEQRRRAKAVNFGL 766
Query: 717 VYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRS 776
+YG+S FGL+ LGIPR A+ Y+D YFERYPG+ YME A DKGYVET+F RR
Sbjct: 767 IYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAAADKGYVETIFGRRLH 826
Query: 777 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR-VLDKGGYKSKMLLQVHDE 835
LP+I SRN R+ AER AIN+P+QG+AADI+K AM+ +D+ + ++G + K+L+QVHDE
Sbjct: 827 LPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDE 886
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+V EV + I V K MESA L VPL+A+ G+ W +A
Sbjct: 887 LVFEVEESSLSEIESKVQKLMESAAELKVPLVAEAGHGDNWDQA 930
>gi|1706502|sp|P52028|DPOT_THETH DNA polymerase I, thermostable (Tth
polymerase 1)
gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus
thermophilus]
gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector
pLED-HB]
Length = 834
Score = 506 bits (1303), Expect = e-142
Identities = 334/880 (37%), Positives = 490/880 (54%), Gaps = 60/880 (6%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R FFAL + G A+YGF L L + V
Sbjct: 11 KGRVLLVDGHHLAYRTFFALKG----LTTSRGEPVQAVYGFAKSLLKALKEDGYKAVFVV 66
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG E+ YEADD++ TL
Sbjct: 67 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATL 126
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK+AE E +++ +++ D+DL QL ++ V + +G TP +L EK G+ P Q
Sbjct: 127 AKKAE--KEGYEVRILTADRDLYQLV-SDRVAVLHPEG----HLITPEWLWEKYGLRPEQ 179
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
++D +AL+GD SDN+PGV IGEKT LKLL E+GSLE + +N++ +K ++E + E
Sbjct: 180 WVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLE 239
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
LS L+ + P+ + D+ D + L F + ++F G +
Sbjct: 240 DLRLSLELSRVRTDLPLEV---DLAQGREPDREGLRAFLERLEFGSLLHEFGLLEAPAPL 296
Query: 304 EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIY-ATSNVSLLQEAL 362
E E E F F + +L +A ++ A ++ L++
Sbjct: 297 E----EAPWPPPE----GAFVGFVLSRPEPMWAELKALAACRDGRVHRAADPLAGLKDL- 347
Query: 363 FKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNL 422
K ++ K VL +R +DL P D L YLL + + +AR Y
Sbjct: 348 ------KEVRGLLAKDLAVLASREGLDLV-PGDDPMLLAYLLDPS-NTTPEGVARRYGGE 399
Query: 423 PLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQP 482
T+DA A RA+ E L + + ++ E ++ L E+E+P
Sbjct: 400 W--TEDA-----AHRAL-----LSERLHRNLLKRLEGEEKLLW---------LYHEVEKP 438
Query: 483 LANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFE 542
L+ VLA ME G++ L +++E + I L +E++ LAG FN+NS QL ++LF+
Sbjct: 439 LSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLFD 498
Query: 543 TLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL- 600
L LP + K KTG ST+ VLE L P+V KIL++R++TKL++TY+ L +
Sbjct: 499 ELRLPA-LGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVHP 557
Query: 601 EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQI 660
G++HTR+ Q T TGRLSSSDPNLQNIPVR G+ IR+AFV +E L++ DYSQI
Sbjct: 558 RTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFV-AEAGWALVALDYSQI 616
Query: 661 ELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGI 720
ELRVLAH+S DE+LI F+EG DIHT TA +FG+ PE V P RR AK VNFG++YG+
Sbjct: 617 ELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGV-PPEAVDPLMRRAAKTVNFGVLYGM 675
Query: 721 SDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDI 780
S LS L IP + A +I+ YF+ +P ++ ++E + E + +GYVETLF RRR +PD+
Sbjct: 676 SAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDL 735
Query: 781 NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEV 840
N+R ++R+ AER A N P+QG+AAD++K+AM+ L L + G ++MLLQVHDE++LE
Sbjct: 736 NARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLREMG--ARMLLQVHDELLLEA 793
Query: 841 PNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
P + L + ME A L+VPL + GE W AK
Sbjct: 794 PQARAEEVAALAKEAMEKAYPLAVPLEVEVGMGEDWLSAK 833
>gi|15602930|ref|NP_246002.1| PolA [Pasteurella multocida]
gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida]
Length = 930
Score = 506 bits (1302), Expect = e-141
Identities = 358/947 (37%), Positives = 511/947 (53%), Gaps = 94/947 (9%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RAF A N+ T A+YG ML ++ +VQPSHI V
Sbjct: 6 ENPLVLVDGSSYLYRAFHAF----PPLTNSLNEPTGAMYGVLNMLKSLISQVQPSHIAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R P+E R Q + + LGI +E EADD+IGTL
Sbjct: 62 FDAKGKTFRDEIFEQYKSHRPPMPEELRSQILPLHNIIRALGIPLLVVEGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-------TVVEISKKGVAEFEEFTPAYLMEK 176
A QA + + + + +GDKD+ QL D N T + ++GV +EK
Sbjct: 122 AVQASRAGK--KVLISTGDKDMAQLVDENIMLINTMTNTLLDREGV-----------LEK 168
Query: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMK- 235
G+ P ID ALMGD SDNIPG+ +GEKT L LL GS+ IY N++ + ++
Sbjct: 169 YGLPPELIIDYLALMGDSSDNIPGIPGVGEKTALGLLQGIGSMAEIYANLDKVASLSLRG 228
Query: 236 -----ENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK-- 288
L K+ A LS LATI + + E + + G + AL +++ +FK
Sbjct: 229 AKTLGAKLAEAKDLADLSYLLATIKTDVALDVSPEQLTF-GVANKDALIEYFARYEFKRW 287
Query: 289 -------------------------QFKAALGEETSQEDFEVD------FTEVEQLKTEM 317
Q + E + ++D E+ +LK +
Sbjct: 288 LNEVMNGGESSVTNGSEQAVKINPYQATPSTNERENTVSVQIDRSQYQCLLELSELKRWI 347
Query: 318 FSDNDFYYF----EMLGDNYHVEDLIGIAWG--NSDTIYATSNVSLL---QEALFKKALS 368
N E +Y V L+G+++ N + Y L Q+ F+ ALS
Sbjct: 348 DKLNQAKCIAIDTETDSLDYMVAHLVGVSFALENGEAAYLPLRHDYLGAPQQVDFQTALS 407
Query: 369 --KPIKT--------YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARL 418
KP+ + K + R I++ ++DT L Y+L +T + + +A+
Sbjct: 408 LLKPVLENPEIHKVGQNIKYDLSIFARHGIEVQGVSYDTMLLSYVLDSTGRHNMDELAKR 467
Query: 419 YTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQL--KANEQEEL- 475
Y + + GKG K + LE A+ D + Q L K Q EL
Sbjct: 468 YLGHQTIHFEDIAGKG-KAQLTFNQIPLEQAAEYAAEDADITMKLQQVLWEKVAAQPELV 526
Query: 476 -LFE-MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSP 533
L++ ME PLA+VL+++E G+ + + L + + + L Q+ YELAGQ+FN+ S
Sbjct: 527 KLYQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRLTALEQQAYELAGQQFNLAST 586
Query: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYII 593
KQL ++LF+ L LPV + K K ST +VLE LA L ++E+R ++KL+STY
Sbjct: 587 KQLQEILFDKLSLPV-LKKTPKGAPSTNEEVLEELAYEHALPKILVEHRGLSKLKSTYTD 645
Query: 594 GLQDYILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVL 652
L + +D G++HT Y Q +T TGRLSSSDPNLQNIP+R E+GR IR+AF+ E +
Sbjct: 646 KLPLMVNKDTGRVHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFIAPEGYQI- 704
Query: 653 LSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAV 712
+++DYSQIELR++AH+S+D+ LI AF EG DIH STA +FGI + V+ RR+AKA+
Sbjct: 705 MAADYSQIELRIMAHLSQDKGLINAFNEGKDIHRSTAAEIFGIPLAQ-VSSEQRRSAKAI 763
Query: 713 NFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFH 772
NFG++YG+S FGLS LGIPR A++Y+D YF+RYPG++ +M + AK +GYV TLF
Sbjct: 764 NFGLIYGMSSFGLSRQLGIPRHEAQKYMDLYFQRYPGVQAFMHDIRETAKAQGYVTTLFD 823
Query: 773 RRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQV 832
RR LPDI S N R+ AER AIN+P+QG+AADI+K AMI LDR + G KM++QV
Sbjct: 824 RRLYLPDIQSSNAIRRKAAERVAINAPMQGTAADIIKRAMITLDREI-AGQPDIKMIMQV 882
Query: 833 HDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
HDE+V EV ++I R ++ TME A L VPLI D G+ W EA
Sbjct: 883 HDELVFEVRTDKIEHFRTIIKTTMEQAAQLVVPLIVDVGVGKNWDEA 929
>gi|32477714|ref|NP_870708.1| DNA polymerase I [Pirellula sp.]
gi|32448268|emb|CAD77785.1| DNA polymerase I [Pirellula sp.]
Length = 1027
Score = 506 bits (1302), Expect = e-141
Identities = 334/919 (36%), Positives = 495/919 (53%), Gaps = 73/919 (7%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
++++D S+ ++ F AL + GL +A+YGF + +L R P +++ AFD
Sbjct: 130 VVVVDAHSLIYQVFHAL----PPMTSTGGLPVSAVYGFVGDMLELLSRKNPDYLIAAFDK 185
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
+ TFR E+Y +YK R PDE R+Q P IRQ +D +GI E +EADD++ T+A +
Sbjct: 186 SEVTFRNELYPEYKANRDSMPDELRQQIPLIRQAIDAMGIGIIEQSGFEADDLLATVAAK 245
Query: 127 AEASNEHFDITVVSGDKDLIQL-TDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
E + VV+ DKD QL +D + I K +E A L GI P Q +
Sbjct: 246 VEEAGGR--CLVVTSDKDCRQLISDQTKIYNIRKD-----QEIDAAELFGLWGIRPDQVV 298
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D +AL+GD DN+PG++ IG K +LL + +LE I N E++ K KENL+N +E A
Sbjct: 299 DYQALVGDPVDNVPGISLIGPKIAQQLLETHDTLEEILNNAESISGKKRKENLMNGREAA 358
Query: 246 FLSKTLATI--NIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAA----LGEETS 299
+S+ L + ++ SPI + D++ + E F++ ++ LG E
Sbjct: 359 MMSRELVELKRDVESPIPW---NRCVRSAADLERVDALLQEFGFRRLRSRAAELLGGEAP 415
Query: 300 QEDFE----------VDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVE--DLIG--IAWGN 345
E+ + + +E++ L E+ + + + H DL+G IAW
Sbjct: 416 VEEPKPAWESRYQTITNESELKALAVEL-AKQTVLAIDTETTSTHARGCDLVGISIAWQP 474
Query: 346 SDTIYATSN-------------VSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPE 392
+ Y + +L++ L A+ K ++ K ++L + L
Sbjct: 475 GEAAYIPVRAPDGDPAINELIVIEILRDVLESSAIEK--VGHNLKFDVIVLRSAGVQLGG 532
Query: 393 PAFDTRLAKYLLSTTEDN--LVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLE--- 447
DT +A YLL++ N L R + L D + G G K+ ++ +
Sbjct: 533 ITMDTMVADYLLNSGGRNHGLDDLAQRRLDHTNLSIKDLI-GTGKKQITMDQVPVDDVSP 591
Query: 448 HLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAI 507
+ + V V + + +L + + L E+E PL VLA+ME GI V +TL +M+
Sbjct: 592 YACEDVDVPIRLAPTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSE 651
Query: 508 ENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLER 567
K I L ++ AG EFN++SPKQLG +LFE LGLPV KKTKTG ST DVL +
Sbjct: 652 RFDKDIADLRALVFSAAGHEFNLDSPKQLGVVLFEELGLPV--IKKTKTGVSTDADVLSQ 709
Query: 568 LAPISPLVTKILEYRQITKLQSTYIIGLQDYILED-GKIHTRYVQDLTQTGRLSSSDPNL 626
LA + +L+YRQ TKL++TYI L I + G++HT + QD+ TGRLSSS+PNL
Sbjct: 710 LAVNHEIAEHVLQYRQATKLKNTYIDALPQLICDKTGRVHTSFRQDVAATGRLSSSEPNL 769
Query: 627 QNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHT 686
QNIP+R EQG+ IR AF + LL +DYSQIELRVLAH S DE LI A+ + ADIHT
Sbjct: 770 QNIPIRTEQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALIGAYHDDADIHT 829
Query: 687 STAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFER 746
A V GIE+ E VT + RR AK +NFGIVYG S FGL+ LGI A+ YI+ YF+R
Sbjct: 830 RVAAEVNGIEESE-VTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEARDYIELYFQR 888
Query: 747 YPGIKNYMETVVREAKDKGYVETLFHRRRS---------LPDINSRNFNIRQFAERTAIN 797
Y G++ +M + +++GYV T+ RRR LP+ R+ ER AIN
Sbjct: 889 YSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLT---EPERIAIN 945
Query: 798 SPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTME 857
PIQG+AAD++K+AM+ + L + ++++LLQ+HDE++LE P+EE+ A+ + + + M
Sbjct: 946 MPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEELDALSDTIREAMT 1005
Query: 858 SAISLSVPLIADENAGETW 876
S + L VPL D G TW
Sbjct: 1006 SVMELDVPLKVDVAHGRTW 1024
>gi|232010|sp|P30313|DPOF_THETH DNA polymerase I, thermostable (Tfl
polymerase 1)
gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I -
Thermus aquaticus
gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus
thermophilus]
Length = 831
Score = 505 bits (1300), Expect = e-141
Identities = 337/888 (37%), Positives = 497/888 (55%), Gaps = 78/888 (8%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R FFAL + G A+YGF L L + ++V
Sbjct: 10 KGRVLLVDGHHLAYRTFFALKG----LTTSRGEPVQAVYGFAKSLLKAL-KEDGDVVVVV 64
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG+ E+ +EADD++ TL
Sbjct: 65 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGLVRLEVPGFEADDVLATL 124
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK+AE E +++ +++ D+DL QL + + +G TPA+L EK G+ P Q
Sbjct: 125 AKRAE--KEGYEVRILTADRDLYQLLSERIAI-LHPEGYL----ITPAWLYEKYGLRPEQ 177
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
++D +AL GD SDNIPGV IGEKT +L+ E+GSLE ++++++ +K S ++E L E
Sbjct: 178 WVDYRALAGDPSDNIPGVKGIGEKTAQRLIREWGSLENLFQHLDQVKPS-LREKLQAGME 236
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALG-------- 295
LS+ L+ ++ P+ + D +++ L F + ++F G
Sbjct: 237 ALALSRKLSQVHTDLPLEV---DFGRRRTPNLEGLRAFLERLEFGSLLHEFGLLEGPKAA 293
Query: 296 EETSQEDFEVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNV 355
EE E F FS + + E+L + AW +
Sbjct: 294 EEAPWPPPEGAFLGFS------FSRPEPMWAELLA--------LAGAW--------EGRL 331
Query: 356 SLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTI 415
Q+ L K ++ K VL R +DL P D L YLL + + +
Sbjct: 332 HRAQDPLRGLRDLKGVRGILAKDLAVLALREGLDL-FPEDDPMLLAYLLDPS-NTTPEGV 389
Query: 416 ARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL 475
AR Y T+DA E+ E L + +K ++LK E+
Sbjct: 390 ARRYGGEW--TEDA----------GERALLAERLFQTLK----------ERLKGEERLLW 427
Query: 476 LF-EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPK 534
L+ E+E+PL+ VLA+ME G+++ L +++E + + L +E++ LAG FN+NS
Sbjct: 428 LYEEVEKPLSRVLARMEATGVRLDVAYLQALSLEVEAEVRQLEEEVFRLAGHPFNLNSRD 487
Query: 535 QLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYII 593
QL ++LF+ LGLP + K KTG ST+ VLE L P+V +IL+YR++TKL++TYI
Sbjct: 488 QLERVLFDELGLPA-IGKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELTKLKNTYID 546
Query: 594 GLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVL 652
L + + G++HTR+ Q T TGRLSSSDPNLQNIPVR G+ IR+AFV +E+ VL
Sbjct: 547 PLPALVHPKTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFV-AEEGWVL 605
Query: 653 LSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAV 712
+ DYSQIELRVLAH+S DE+LI F+EG DIHT TA +FG+ PE V P RR AK +
Sbjct: 606 VVLDYSQIELRVLAHLSGDENLIRVFQEGRDIHTQTASWMFGVS-PEGVDPLMRRAAKTI 664
Query: 713 NFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFH 772
NFG++YG+S LS L IP + A +I+ YF+ YP ++ ++E + E + +GYVETLF
Sbjct: 665 NFGVLYGMSAHRLSGELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEEGRRRGYVETLFG 724
Query: 773 RRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQV 832
RRR +PD+N+R ++R+ AER A N P+QG+AAD++K+AM+ L L + G ++MLLQV
Sbjct: 725 RRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVRLFPRLQELG--ARMLLQV 782
Query: 833 HDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
HDE+VLE P + + L + ME L VPL + GE W AK
Sbjct: 783 HDELVLEAPKDRAERVAALAKEVMEGVWPLQVPLEVEVGLGEDWLSAK 830
>gi|2506365|sp|P80194|DPO1_THECA DNA polymerase I, thermostable (TAC
polymerase 1)
gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus
caldophilus]
Length = 834
Score = 503 bits (1296), Expect = e-141
Identities = 334/881 (37%), Positives = 492/881 (54%), Gaps = 62/881 (7%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R FFAL + G A+YGF L L + V
Sbjct: 11 KGRVLLVDGHHLAYRTFFALKG----LTTSRGEPVQAVYGFAKSLLKALKEDGYKAVFVV 66
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG E+ YEADD++ TL
Sbjct: 67 FDAKAPSFRHEAYEAYKAGRAPTPEDFPRQLALIKELVDLLGFTRLEVPGYEADDVLATL 126
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK E E +++ +++ D+DL QL ++ V + +G TP +L +K G+ P Q
Sbjct: 127 AKNPE--KEGYEVRILTADRDLDQLV-SDRVAVLHPEG----HLITPEWLWQKYGLKPEQ 179
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
++D +AL+GD SDN+PGV IGEKT LKLL E+GSLE + +N++ +K ++E + E
Sbjct: 180 WVDFRALVGDPSDNLPGVKGIGEKTALKLLKEWGSLENLLKNLDRVKPENVREKIKAHLE 239
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
LS L+ + P+ + D+ D + L F + ++F G +
Sbjct: 240 DLRLSLELSRVRTDLPLEV---DLAQGREPDREGLRAFLERLEFGSLLHEFGLLEAPAPL 296
Query: 304 EVDFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIY-ATSNVSLLQEAL 362
E E E F F + +L +A ++ A ++ L++
Sbjct: 297 E----EAPWPPPE----GAFVGFVLSRPEPMWAELKALAACRDGRVHRAADPLAGLKDL- 347
Query: 363 FKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNL 422
K ++ K VL +R +DL P D L YLL + + +AR Y
Sbjct: 348 ------KEVRGLLAKDLAVLASREGLDLV-PGDDPMLLAYLLDPS-NTTPEGVARRYGGE 399
Query: 423 PLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQ 481
T+DA A RA+ + R +L K+ L+ E+ L+ E+E+
Sbjct: 400 W--TEDA-----AHRALLSE-RLHRNLLKR--------------LQGEEKLLWLYHEVEK 437
Query: 482 PLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLF 541
PL+ VLA ME G+++ L +++E + I L +E++ LAG FN+NS QL ++LF
Sbjct: 438 PLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQLERVLF 497
Query: 542 ETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL 600
+ L LP + K KTG ST+ VLE L P+V KIL++R++TKL++TY+ L +
Sbjct: 498 DELRLPA-LGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKNTYVDPLPSLVH 556
Query: 601 ED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQ 659
+ G++HTR+ Q T TGRLSSSDPNLQNIPVR G+ IR+AFV +E L++ DYSQ
Sbjct: 557 PNTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQRIRRAFV-AEAGWALVALDYSQ 615
Query: 660 IELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG 719
IELRVLAH+S DE+LI F+EG DIHT TA +FG+ PE V P RR AK VNFG++YG
Sbjct: 616 IELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGV-PPEAVDPLMRRAAKTVNFGVLYG 674
Query: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPD 779
+S LS L IP + A +I+ YF+ +P ++ ++E + E + +GYVETLF RRR +PD
Sbjct: 675 MSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPD 734
Query: 780 INSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLE 839
+N+R ++R+ AER A N P+QG+AAD++K+AM+ L L + G ++MLLQVHDE++LE
Sbjct: 735 LNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLREMG--ARMLLQVHDELLLE 792
Query: 840 VPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
P + L + ME A L+VPL + GE W AK
Sbjct: 793 APQAGAEEVAALAKEAMEKAYPLAVPLEVEVGMGEDWLSAK 833
>gi|23469605|ref|ZP_00124939.1| hypothetical protein [Pseudomonas
syringae pv. syringae B728a]
Length = 921
Score = 498 bits (1283), Expect = e-139
Identities = 348/933 (37%), Positives = 513/933 (54%), Gaps = 78/933 (8%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DGSS +RAF AL + GL T A+ G ML + + S + V FDA
Sbjct: 6 LVLVDGSSYLYRAFHAL----PPLATSKGLPTGAVKGVLNMLKSLRRQYPDSPLAVVFDA 61
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR +Y DYK R PD+ R Q + + +G +E EADD+IGTLA+
Sbjct: 62 KGGTFRDALYNDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLARS 121
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
+ A++ + + +GDKD+ QL D + T+V V + A + EK G+ P I
Sbjct: 122 SAAADR--PVVISTGDKDMAQLVDGHITLVNTMTGSVLDV-----AGVKEKFGVGPEHII 174
Query: 186 DLKALMGDKSDNIPGVTKIGEKTG-LKLLSEYGSLEGIYENIEAMKQ------SKMKENL 238
D ALMGDK DNIPGV +GEKT L+ G ++ +YEN++ + + L
Sbjct: 175 DYLALMGDKVDNIPGVPGVGEKTAVGLLVGIGGGIKELYENLDKVASLPIRGAKTLAAKL 234
Query: 239 INDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL---- 294
+E AFLS LATI I P+ I L D L+ G D L + Y E++FK + L
Sbjct: 235 EEHREMAFLSYELATIKIDVPLDIEL-DQLHCGEPDRDTLMELYAELEFKSWIEDLQRDA 293
Query: 295 ---GEETSQEDFEVDFTE------VEQ------LKTEMFSDNDFYYFEMLGDNYHVEDLI 339
G+E + E+ + E +EQ LK + + + G + L+
Sbjct: 294 KRAGQELTIEEPTAEAREAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLV 353
Query: 340 GIAWG----NSDTIYATSNVSLLQEAL--------FKKALSKPIKTYDFKRSKVLLNRF- 386
G+++ + I T + + + L K L P K + +K +N
Sbjct: 354 GLSFAIQTHEAAYIPLTHSYMGVPQQLDRDTVLKALKPLLEDPDKIKVGQHAKFAINLLA 413
Query: 387 ----------NIDLPEPAFDTRLAKYLL--STTEDNLVSTIARLYTNLPLDTDDAVYGKG 434
IDL FDT L Y+L + T + S +A+ T+ P++ + + GKG
Sbjct: 414 NCAIDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQE-IAGKG 472
Query: 435 AKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKAN-----EQEELLFEMEQPLANVLAK 489
AK+ ++ LE D + + A + +L ++E PL VLA+
Sbjct: 473 AKQLSFDQIA-LEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVLAR 531
Query: 490 MEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVE 549
+E +G V N L ++E + L +E + +AG+EFN+ SPKQLG +L+E LG+P+
Sbjct: 532 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPI- 590
Query: 550 MTKKTKTGY-STAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIH 606
KT TG STA VL LA PL +++YR ++KL+STY L + I G+IH
Sbjct: 591 -LSKTATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIH 649
Query: 607 TRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLA 666
T Y Q + TGRLSSSDPNLQNIP+R +GR IR+AFV + LL++DYSQIELR++A
Sbjct: 650 TSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYK-LLAADYSQIELRIMA 708
Query: 667 HISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLS 726
H+++DE L+ AF+ D+H +TA VFG+E ENVT + RR+AKA+NFG++YG+S FGL+
Sbjct: 709 HLAQDEGLLHAFRNDLDVHRATAAEVFGVEL-ENVTTDMRRSAKAINFGLIYGMSAFGLA 767
Query: 727 HNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFN 786
+G+ RK ++ Y+D YF RYPG+ NYME +A ++G+VET+F RR LPDIN++N +
Sbjct: 768 KQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQS 827
Query: 787 IRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIG 846
+R+ AER AIN+P+QG+AADI+K AM+ ++ LD+ G ++++LQVHDE+VLEV + +
Sbjct: 828 LRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVD 887
Query: 847 AIRELVTKTMESAISLSVPLIADENAGETWYEA 879
I E + M A L+VPL+ + G W EA
Sbjct: 888 QISEQIRPHMSGAAELAVPLLVEVGVGNNWDEA 920
>gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae]
gi|11261553|pir||B82364 DNA polymerase I VC0108 [imported] - Vibrio
cholerae (strain N16961 serogroup O1)
gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae]
Length = 934
Score = 497 bits (1279), Expect = e-139
Identities = 346/952 (36%), Positives = 503/952 (52%), Gaps = 102/952 (10%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
N L+LIDGSS +RAF A + +N + TNAIYG M+ ++ + + V F
Sbjct: 7 NPLILIDGSSYLYRAFHAYPGTM----SNGEIPTNAIYGVVNMIRSMMRQFASDRMAVIF 62
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR EMY YK R PDE R Q + Q + +G+ +E EADD+IGTLA
Sbjct: 63 DAKGKTFRDEMYDQYKAHRPPMPDELRCQVEPLHQVIRAMGLPLLAIEGVEADDVIGTLA 122
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
+Q AS + + +GDKD+ QL D N T++ V + E ++EK GI P
Sbjct: 123 RQ--ASQAGMPVLISTGDKDMAQLVDDNITLINTMTNVVLDREG-----VIEKFGIPPEL 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QSKMKEN 237
ID ALMGDK DNIPGV +GEKT LL G LE +Y N++ + M +
Sbjct: 176 IIDYLALMGDKVDNIPGVPGVGEKTATALLQGIGGLEALYANLDKIAALGFRGSKTMAQK 235
Query: 238 LINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL--- 294
L ++ A LS LATI + + +L P D AL Y ++ FK + L
Sbjct: 236 LEENRGNAKLSYQLATIKCDVELEESPQTLLKQTP-DRDALMSLYGKLAFKSWLTELLDG 294
Query: 295 --GEETSQEDFEVDFTEVE-------------------------------QLKTEMFSDN 321
G T+ E + V QL E
Sbjct: 295 GTGIVTADEQTKTSSVTVSTAATHAAAIPESPAAHIDRSQYQTILNEQDFQLWLEKLKQA 354
Query: 322 DFYYFEMLGDN--YHVEDLIGIAWGNSDTIYATSNVS---------------LLQEALFK 364
+ + F+ DN Y V +L+G+++ ++ A V+ + Q
Sbjct: 355 ELFAFDTETDNLDYMVANLVGMSFAVAEGEAAYLPVAHDYLDAPQQLERDWVIAQLKPLL 414
Query: 365 KALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLP 423
+ SK + K ++ R+ ++L DT L Y+ S + + ++A +
Sbjct: 415 EDESKAKVGQNLKYDASVMARYGVELRGIRHDTMLQSYVYNSVGGKHDMDSLALRFLQHS 474
Query: 424 LDTDDAVYGKGAKR------AIPEKTRFLEH-------LAKKVKVLVDSEANIMQQLKAN 470
+ + V GKG + A+ E ++ L +++ L++ +A +
Sbjct: 475 CISFEQVAGKGKNQLTFNQIALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKL------- 527
Query: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNI 530
E++ E+E PL VL+++E G+ + L+ + E ++ L Q YELAGQ FN+
Sbjct: 528 --EQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNL 585
Query: 531 NSPKQLGKLLFETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQS 589
+SPKQL +LFE + LPV +KT +G ST +VL+ LA PL ++EYR + KL+S
Sbjct: 586 SSPKQLQTILFEQMKLPV--LQKTPSGTPSTNEEVLQELALDYPLPKVLIEYRGLAKLKS 643
Query: 590 TYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSED 648
TY L I G++HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AFV +
Sbjct: 644 TYTDKLPKMINPSTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFV-APH 702
Query: 649 NAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRN 708
+++ DYSQIELR++AH+S D+ L+ AF++G DIH +TA + G+ + V+ RR
Sbjct: 703 GWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGV-PIDQVSSEQRRR 761
Query: 709 AKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVE 768
AKAVNFG++YG+S FGL+ LGIPR A++Y+D YFERYPG+ YME A GYVE
Sbjct: 762 AKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVE 821
Query: 769 TLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDK-GGYKSK 827
T+F RR LP+I SRN R+ AER AIN+P+QG+AADI+K AM+ +D +++ G + K
Sbjct: 822 TIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVK 881
Query: 828 MLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+L+QVHDE+V EV + I V + MESA L+VPL+A+ G+ W +A
Sbjct: 882 LLMQVHDELVFEVKESSLSEIESKVQQLMESAAELAVPLVAEAGHGDNWEQA 933
>gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae
pv. tomato str. DC3000]
gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 925
Score = 496 bits (1278), Expect = e-139
Identities = 347/933 (37%), Positives = 511/933 (54%), Gaps = 78/933 (8%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DGSS +RAF AL + GL T A+ G ML + + S + V FDA
Sbjct: 10 LVLVDGSSYLYRAFHAL----PPLTTSKGLPTGAVKGVLNMLKSLRRQYPDSPLAVVFDA 65
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR +Y DYK R PD+ R Q + + +G +E EADD+IGTLA+
Sbjct: 66 KGGTFRDALYTDYKANRPSMPDDLRVQVDLLHACVKGMGYPFLCVEGVEADDVIGTLARS 125
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
+ A++ + + +GDKD+ QL D + T+V V + A + EK G+ P I
Sbjct: 126 SAAADR--PVVISTGDKDMAQLVDGHITLVNTMTGSVLDV-----AGVKEKFGVGPEHII 178
Query: 186 DLKALMGDKSDNIPGVTKIGEKTG-LKLLSEYGSLEGIYENIEAMKQ------SKMKENL 238
D ALMGDK DNIPGV +GEKT L+ G ++ +Y+N+E + + L
Sbjct: 179 DYLALMGDKVDNIPGVPGVGEKTAVGLLVGVGGGIKELYDNLEMVATLPIRGAKTLAAKL 238
Query: 239 INDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL---- 294
+ AFLS LATI I P+ I LE + S P D L + Y E++FK + L
Sbjct: 239 EEHRAMAFLSYELATIKIDVPLDIELEQLHCSEP-DRDKLMELYAELEFKSWIEDLQRDA 297
Query: 295 ---GEETSQEDFEVDFTE------VEQ------LKTEMFSDNDFYYFEMLGDNYHVEDLI 339
G+E E+ V E +EQ LK + + + G + L+
Sbjct: 298 KRAGQELVVEEPTVAAKEAAYEVILEQGQFDAWLKKLQAAPLFAFVTQSNGTDAQRAQLV 357
Query: 340 GIAWG----NSDTIYATSNVSLLQEAL--------FKKALSKPIKTYDFKRSKVLLNRF- 386
G+++ + I T + + + L K L P K + +K +N
Sbjct: 358 GLSFAIQPHEAAYIPLTHSYMGVPQQLDRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLA 417
Query: 387 ----------NIDLPEPAFDTRLAKYLL--STTEDNLVSTIARLYTNLPLDTDDAVYGKG 434
I+L FDT L Y+L + T + S +A+ T+ P++ D + GKG
Sbjct: 418 NCAIGGDQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQD-IAGKG 476
Query: 435 AKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKAN-----EQEELLFEMEQPLANVLAK 489
AK+ ++ +E D + + +A + +L E+E PL VLA+
Sbjct: 477 AKQLTFDQIA-IEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEMPLVPVLAR 535
Query: 490 MEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVE 549
+E +G V N L ++E + L +E + +AG+EFN+ SPKQLG +L+E LG+P+
Sbjct: 536 IERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEFNLGSPKQLGVILYEKLGMPI- 594
Query: 550 MTKKTKTGY-STAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIH 606
KT TG STA VL LA PL +++YR ++KL+STY L + I G+IH
Sbjct: 595 -LSKTATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIH 653
Query: 607 TRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLA 666
T Y Q + TGRLSSSDPNLQNIP+R +GR IR+AFV + LL++DYSQIELR++A
Sbjct: 654 TSYHQAVAVTGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPKGYK-LLAADYSQIELRIMA 712
Query: 667 HISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLS 726
H++KDE L+ AF+ D+H +TA VFG+E ENVT + RR+AKA+NFG++YG+S FGL+
Sbjct: 713 HLAKDEGLLHAFRNDLDVHRATASEVFGVEL-ENVTTDMRRSAKAINFGLIYGMSAFGLA 771
Query: 727 HNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFN 786
+G+ RK ++ Y+D YF RYPG+ +YME +A ++G+VET+F RR LPDIN++N +
Sbjct: 772 KQIGVDRKQSQAYVDRYFARYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPS 831
Query: 787 IRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIG 846
+R A+R AIN+P+QG+AADI+K AM+ ++ LD+ G ++++LQVHDE+VLEV + +
Sbjct: 832 LRNGAQRMAINAPMQGTAADIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVD 891
Query: 847 AIRELVTKTMESAISLSVPLIADENAGETWYEA 879
I E + M A L+VPL+ + G W EA
Sbjct: 892 QISEQIRPHMSGAAELAVPLLVEVGVGNNWDEA 924
>gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida
KT2440]
gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas
putida KT2440]
Length = 915
Score = 494 bits (1273), Expect = e-138
Identities = 344/929 (37%), Positives = 504/929 (54%), Gaps = 76/929 (8%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DGSS +RAF AL + G+ T A+ G ML + + S V FDA
Sbjct: 6 LVLVDGSSYLYRAFHAL----PPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFDA 61
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR M+A+YK R PD+ R Q + + LG +E EADD+IGTLA+
Sbjct: 62 KGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLARS 121
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
+ A + + +GDKD+ QL D + T+V V + A + EK G+ P I
Sbjct: 122 SAALGR--PVIISTGDKDMAQLVDGHITLVNTMTGSVLDV-----AGVHEKFGVGPEHII 174
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEG-IYENIE-----AMKQSK-MKENL 238
D ALMGDK DNIPGV +GEKT + LL+ G +Y N++ A++ +K + L
Sbjct: 175 DFLALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKL 234
Query: 239 INDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEET 298
++ AFLS LATI + P+ + +E L G D +AL Y EM+FK + A L +
Sbjct: 235 EEHRDAAFLSYELATIKVDVPLDVEVE-ALVCGEPDREALLALYTEMEFKSWVAELQRDA 293
Query: 299 SQEDFEVDFTEVEQLKTEM-----------------FSDNDFYYF--EMLGDNYHVEDLI 339
++ +V +K E + F E G + L+
Sbjct: 294 AKAGDDVAPAVEPAVKVEAKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLV 353
Query: 340 GIAWGNSD---------TIYATSNVSLLQEAL---FKKALSKPIKTYDFKRSKVLLNRF- 386
G+++ Y + V L +EA+ K L P K + +K +N
Sbjct: 354 GLSFAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDINILA 413
Query: 387 ----NIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPE 441
I++ A+DT L Y+L ST + + ++A+ Y + + + GKGAK+
Sbjct: 414 NGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFN 473
Query: 442 KTRFLEHLAKKVKVLVDSEANIMQQLKANEQEEL---------LFEMEQPLANVLAKMEI 492
+ K +A+I +L Q L L ++E PL VLA++E
Sbjct: 474 QINL-----DKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIER 528
Query: 493 RGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTK 552
+G V L + E + L YELAG+ FN+ SPKQLG +L++ LG+PV ++K
Sbjct: 529 QGALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPV-LSK 587
Query: 553 KTKTGYSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYV 610
K STA VL+ LA PL +++YR ++KL+STY L I G+IHT Y
Sbjct: 588 TAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQ 647
Query: 611 QDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISK 670
Q + TGRLSSSDPNLQNIP+R +GR IR+AF+ S LL++DYSQIELR++AH++K
Sbjct: 648 QAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYK-LLAADYSQIELRIMAHLAK 706
Query: 671 DEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLG 730
DE L+ AF+ D+H +TA VFG+ E+VT + RR+AKA+NFG++YG+S FGL+ +G
Sbjct: 707 DEGLLHAFRNDLDVHRATAAEVFGVAL-EDVTTDQRRSAKAINFGLIYGMSAFGLAKQIG 765
Query: 731 IPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQF 790
+ RK ++ YID YF RYPG+ YME +A ++G+VETLF RR LPDIN++N +R+
Sbjct: 766 VDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKG 825
Query: 791 AERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRE 850
AERTAIN+P+QG+AADI+K AM+ +D L + G ++++LQVHDE+VLEV + + +++
Sbjct: 826 AERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKD 885
Query: 851 LVTKTMESAISLSVPLIADENAGETWYEA 879
+ + M A L VPL+ + G W EA
Sbjct: 886 EIRQHMSQAAQLDVPLLVEAGVGANWDEA 914
>gi|29655082|ref|NP_820774.1| DNA polymerase I [Coxiella burnetii
RSA 493]
gi|29542351|gb|AAO91288.1| DNA polymerase I [Coxiella burnetii RSA
493]
Length = 895
Score = 494 bits (1272), Expect = e-138
Identities = 341/909 (37%), Positives = 509/909 (55%), Gaps = 59/909 (6%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+LIDGSS FRA++AL N G T A+YG ML ++ QP ++ V FD
Sbjct: 9 LILIDGSSYLFRAYYAL----PPLTNRKGQPTGAMYGVINMLRKLMVEYQPDYVAVVFDP 64
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR ++Y YK R + P+E R Q + + + LG E YEADD+I TLAK+
Sbjct: 65 KGKTFRHDLYHTYKANRIEMPNELRSQIKPLFEIIRALGFPLIIKEGYEADDVIATLAKK 124
Query: 127 AEASNEHFDITVVSGDKDLIQLTD-----TNTVVE--ISKKGVAEFEEFTPAYLMEKMGI 179
A+ + V +GDKDL Q+ + NT+ + ++ KGV +EK G+
Sbjct: 125 AKEKG--MPVLVSTGDKDLAQIVNEHVTLVNTMTDRLLNSKGV-----------LEKFGV 171
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
P + ID L GD +DNIPGV K+G KT +K LS+Y S+E + ++ +K K+ ENL
Sbjct: 172 PPEKIIDYLTLTGDTTDNIPGVPKVGPKTAVKWLSQYDSVENLIKHANEIK-GKVGENLR 230
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETS 299
+ L + L T+ P+ D++ + ++ + L + + E +FK + A L
Sbjct: 231 ACIDDLPLMRRLVTVISDLPLEENPTDLIQT-EKNREKLIELFTEYEFKSWLAELLANQD 289
Query: 300 QEDFEVDFTEVEQLKT-----EMFSDNDFYYFEMLGDNYHV--EDLIGIAWGNS------ 346
++ + + KT + +D + F+ +++ L+G+++ S
Sbjct: 290 KKVAAFQYATITDKKTFEKWMKKLADAKVFAFDTETTDFNAIQAKLVGVSFAVSPHEAAY 349
Query: 347 ---DTIYATSNVSLLQEAL---FKKALSKPIKTY---DFKRSKVLLNRFNIDLPEPAFDT 397
Y + L +E + K L P KT + K +L + + + +DT
Sbjct: 350 VPLGHDYTGAPAQLDKEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKEGLTIRAKTYDT 409
Query: 398 RLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKT---RFLEHLAKKV 453
LA Y+L S++ + ++T+A Y + + V GKG K+ + + A+
Sbjct: 410 LLASYVLNSSSTRHDLNTLALKYLGRIMVKFEDVAGKGVKQISFNHVTLDKATAYAAEDA 469
Query: 454 KVLVDSEANIMQQLKANEQEELLFE-MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKV 512
V + +M ++ + + +FE +E PL +L KME+RG+ V L +IE
Sbjct: 470 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGR 529
Query: 513 IETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGY-STAVDVLERLAPI 571
I L Q+ Y+LAG+EFN++SPKQL +L+E L LP+ KKT G STA +VL+ LA
Sbjct: 530 IALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPI--FKKTPGGQPSTAENVLQDLALD 587
Query: 572 SPLVTKILEYRQITKLQSTYIIGLQDYILEDG-KIHTRYVQDLTQTGRLSSSDPNLQNIP 630
PL ILE+R +TKL++TY L + +IHT Y Q +T TGRLSS++PNLQNIP
Sbjct: 588 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 647
Query: 631 VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAM 690
+R E+GR IR+AF+ + ++++DYSQ+ELR++AHISKD LI AF + DIH +TA
Sbjct: 648 IRTEEGRKIRRAFI-APPGFQMVAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAA 706
Query: 691 RVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGI 750
VFG+ E VTP RR AKA+NFG++YG+S FGL LGI R LAK+YID YF+RYP +
Sbjct: 707 EVFGVNL-EQVTPEQRRRAKAINFGLLYGMSSFGLGRQLGIGRDLAKEYIDIYFKRYPKV 765
Query: 751 KNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKI 810
YM+ + A +GYVETLF RR LPDI++ N R+ AER AIN+P+QG+AADI+KI
Sbjct: 766 HEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRRRAAERAAINAPMQGTAADIIKI 825
Query: 811 AMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADE 870
AMI + L K ++ +++QVHDE+V EV +++ + + K ME A++LSVPL+ D
Sbjct: 826 AMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKVIPQIKKAMEEAVALSVPLVVDV 885
Query: 871 NAGETWYEA 879
G W EA
Sbjct: 886 GVGGNWDEA 894
>gi|15793464|ref|NP_283286.1| DNA polymerase I [Neisseria
meningitidis Z2491]
gi|11261571|pir||F81963 DNA-directed DNA polymerase (EC 2.7.7.7) I
NMA0462 [imported] - Neisseria meningitidis (strain
Z2491 serogroup A)
gi|7379209|emb|CAB83758.1| DNA polymerase I [Neisseria meningitidis
Z2491]
Length = 938
Score = 493 bits (1269), Expect = e-138
Identities = 348/963 (36%), Positives = 508/963 (52%), Gaps = 110/963 (11%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M+N+ LLL+DGSS +RA+ A+ + G T A+YG ML + +
Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNL---TAPDGAPTGALYGVLNMLRRLRSEYPHDYC 57
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FDA FR +M+ +YK R PD+ R Q + + + G + EADD+I
Sbjct: 58 AVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVI 117
Query: 121 GTLAKQAEASNEH-FDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMG 178
GTLAKQ EH + V +GDKD+ QL D T+V + E + K G
Sbjct: 118 GTLAKQGA---EHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEG-----VKAKFG 169
Query: 179 ITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENL 238
+ P Q D ALMGDK DN+PGV K G KT +K L YGSL+G+ E+ +K K+ ENL
Sbjct: 170 VRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLQGVIEHASEIK-GKVGENL 228
Query: 239 INDKEQAFLSKTLATI----NIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF---- 290
Q LS L TI ++ + ++ G+E + + P+ + + +DFK++
Sbjct: 229 QAALPQLPLSYDLVTIKTDVDLHAELSDGIESLRCTTPKWAQLV------VDFKRWGFRT 282
Query: 291 -------------------------KAALGEETSQEDFEVDFTEVEQLKTEMFSDNDFYY 325
+AAL E E T E+L + +
Sbjct: 283 WLKEAESNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKATAPEKLDYQAVTTE--AQ 340
Query: 326 FEMLGDNYHVEDLIG-------------------IAWGNSDTIYATSNVSL--------L 358
F L D D IG IA+ + +Y SL L
Sbjct: 341 FAALLDKLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDL 400
Query: 359 QEAL--FKKALSKPIKT---YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVS 413
Q+ L K L P + K + + + I L A D LA Y++ + + +
Sbjct: 401 QDVLGRLKPHLENPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYIIESHLGHGLD 460
Query: 414 TIARLYTNLPLDTDDAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQL 467
++ + L T +++ GKGAK+ AI + T E+ A+ + EA++ Q+
Sbjct: 461 ELSERWLGLETITYESLCGKGAKQISFADVAIGQAT---EYAAQDADFALRLEAHLRAQM 517
Query: 468 KANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQE 527
A +Q E+ +ME P+A VL +ME G+++ + L + E + L QE Y AGQ
Sbjct: 518 DA-KQLEMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576
Query: 528 FNINSPKQLGKLLFETLGLPVEMTKKT-KTGYSTAVDVLERLAPISPLVTKILEYRQITK 586
FN+NSPKQL ++LF+ +G+P + KKT K G ST VLE+LAP PL IL+ R + K
Sbjct: 577 FNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLAK 636
Query: 587 LQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVP 645
L+STY L + I +DG++HT Y Q + TGRL+S++PNLQNIP+R +GR +R+AF
Sbjct: 637 LKSTYTDKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIRTAEGRRVRRAFTA 696
Query: 646 SEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPND 705
+ +V++S+DYSQIELR++AH+S D+ LIAAF+ G D+H TA VFGI PENV+
Sbjct: 697 PQ-GSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGI-APENVSSEQ 754
Query: 706 RRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKG 765
RR AK +NFG++YG+ +GL+ +LGI AK +ID YF RYPG+ YM+ +A +G
Sbjct: 755 RRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFIDRYFARYPGVAEYMQRTKEQAAAQG 814
Query: 766 YVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGG-- 823
+VETLF RR LPDI ++N N R AER AIN+P+QG+A+D++K AMI++ R L +
Sbjct: 815 FVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEAS 874
Query: 824 -----YKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAIS--LSVPLIADENAGETW 876
+SK+++QVHDE+VLEV E+ ++E + + M L VPL+A+ GE W
Sbjct: 875 PWDELLQSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENW 934
Query: 877 YEA 879
EA
Sbjct: 935 EEA 937
>gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria
meningitidis MC58]
gi|11261575|pir||G81020 DNA polymerase I NMB1982 [imported] -
Neisseria meningitidis (strain MC58 serogroup B)
gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis
MC58]
Length = 938
Score = 491 bits (1265), Expect = e-137
Identities = 348/957 (36%), Positives = 506/957 (52%), Gaps = 98/957 (10%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M+N+ LLL+DGSS +RA+ A+ + G T A+YG ML + +
Sbjct: 1 MSNRPTLLLVDGSSYLYRAYHAMGQNL---TAPDGAPTGALYGVLNMLRRLRSEYPHDYC 57
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FDA FR +M+ +YK R PD+ R Q + + + G + EADD+I
Sbjct: 58 AVVFDAKGKNFRHQMFEEYKATRPPMPDDLRPQAEALPDLVRLTGWPVLVIGQVEADDVI 117
Query: 121 GTLAKQAEASNEH-FDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMG 178
GTLAKQ EH + V +GDKD+ QL D T+V + E + K G
Sbjct: 118 GTLAKQGA---EHGLRVIVSTGDKDMAQLVDERVTLVNTMSSETLDIEG-----VKAKFG 169
Query: 179 ITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENL 238
+ P Q D ALMGDK DN+PGV K G KT +K L YGSL G+ E+ +K K+ ENL
Sbjct: 170 VRPDQIRDYLALMGDKVDNVPGVEKCGPKTAVKWLEAYGSLAGVMEHASEIK-GKVGENL 228
Query: 239 INDKEQAFLSKTLATI----NIASPITIGLEDILYSGPQDIKALSQF------------- 281
Q LS L TI ++ + ++ G+E + + P+ + + F
Sbjct: 229 QAALPQLPLSYDLVTIKTDVDLHAELSDGIESLRRTTPKWAQLVVDFKRWGFRTWLKEAE 288
Query: 282 -------YDEM---DFKQFKAALGEETSQEDFEVDFTEVEQLKTEMFSDNDFYYFEMLGD 331
D++ D +AAL E E T E+L + + F L D
Sbjct: 289 SNMNTGSTDDLFGSDSIGEQAALNAEMPFEKQAEKATAPEKLDYQAVTTE--AQFAALLD 346
Query: 332 NYHVEDLIG-------------------IAWGNSDTIYATSNVSL--------LQEAL-- 362
D IG IA+ + +Y SL LQ+ L
Sbjct: 347 KLSRADTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQLDLQDVLGR 406
Query: 363 FKKALSKPIKT---YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLY 419
K L P + K + + + I L A D LA Y++ + + + ++ +
Sbjct: 407 LKPHLGNPALKKIGQNLKYDQHVFANYGIALNGIAGDAMLASYIIESHLGHGLDELSERW 466
Query: 420 TNLPLDTDDAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQE 473
L T +++ GKGAK+ AI + T E+ A+ + EA++ Q+ +Q
Sbjct: 467 LGLETITYESLCGKGAKQIGFADVAIGQAT---EYAAQDADFALRLEAHLRAQMD-EKQL 522
Query: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSP 533
E+ +ME P+A VL +ME G+++ + L + E + L QE Y AGQ FN+NSP
Sbjct: 523 EMYEKMELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQPFNLNSP 582
Query: 534 KQLGKLLFETLGLPVEMTKKT-KTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYI 592
KQL ++LF+ +G+P + KKT K G ST VLE+LAP PL IL+ R + KL+STY
Sbjct: 583 KQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLAKLKSTYT 642
Query: 593 IGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAV 651
L + I +DG++HT Y Q + TGRL+S++PNLQNIP+R E+GR +R+AF + +V
Sbjct: 643 DKLPEMISPKDGRVHTTYAQAVAITGRLASNNPNLQNIPIRTEEGRKVRRAFTAPQ-GSV 701
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
++S+DYSQIELR++AH+S D+ LIAAF+ G D+H TA VFG PENV+ RR AK+
Sbjct: 702 IVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGT-APENVSSEQRRYAKS 760
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
+NFG++YG+ +GL+ +LGI AK +ID YF RYPG+ YM+ +A +GYVETLF
Sbjct: 761 INFGLIYGMGQYGLAKSLGIDNLSAKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLF 820
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGG-------Y 824
RR LPDI ++N N R AER AIN+P+QG+A+D++K AMI++ R L +
Sbjct: 821 GRRLYLPDIRNKNANARAGAERAAINAPMQGTASDLIKRAMIDVSRWLSECEASPWDELL 880
Query: 825 KSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAIS--LSVPLIADENAGETWYEA 879
+SK+++QVHDE+VLEV E+ ++E + + M L VPL+A+ GE W EA
Sbjct: 881 QSKLIMQVHDELVLEVVETELDFVKEKLPQIMAKVDGGLLDVPLVAEVGVGENWEEA 937
>gi|23104372|ref|ZP_00090838.1| hypothetical protein [Azotobacter
vinelandii]
Length = 908
Score = 491 bits (1265), Expect = e-137
Identities = 343/920 (37%), Positives = 501/920 (54%), Gaps = 65/920 (7%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DGSS +RAF AL + G T A+ G ML + + S V FDA
Sbjct: 6 LVLVDGSSYLYRAFHAL----PPLATSGGTPTGAVKGVLNMLLALRKQYPDSPFAVVFDA 61
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR E++ YK R PD+ R Q + + LG+ +E EADD+IGTLA+
Sbjct: 62 KGPTFRDELFEHYKSHRPPMPDDLRVQIEPLHACVRALGLPLLCVEGVEADDVIGTLARG 121
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
+ + + +GDKD+ QL D + + + G A + EK G+ P ID
Sbjct: 122 SALDGR--PVVISTGDKDMAQLVDGHITLVNTMTGSV----LDHAGVAEKFGVGPELIID 175
Query: 187 LKALMGDKSDNIPGVTKIGEKTG-LKLLSEYGSLEGIYENIEAMKQ------SKMKENLI 239
ALMGDK DNIPGV +GEKT L G L+ IY N+E + + L
Sbjct: 176 YLALMGDKVDNIPGVPGVGEKTALGLLQGLGGGLDTIYANLERVATLPIRGAKSLAAKLE 235
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEET- 298
+E A+LS LATI + I + D L+ D +AL Y E++FK + L E
Sbjct: 236 EHREMAYLSHRLATIKTDVALDIEI-DALHPAAPDREALIALYRELEFKSWLDELLREAH 294
Query: 299 -------------------SQEDFEVDFTEVEQLKTEMFSDN----DFYYFEMLGDNYHV 335
+E F +++Q F D E++G ++ V
Sbjct: 295 AAGPTADPAAPGTHYETLLDRERFAAWLDKLKQAGLIAFDSETTSLDAQQAELVGLSFAV 354
Query: 336 EDL----IGIA---WGNSDTIYATSNVSLLQEALFKKALSKPIK--TYDFKRSKVLLNRF 386
L I +A G D + + ++ L+ L A +K + YD +L +
Sbjct: 355 APLEAAYIPLAHSYMGVPDQLDRDAVLAALRPILEDPARAKVGQHAKYDMN----VLAHY 410
Query: 387 NIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRF 445
I++ A+DT L Y+L ST + + ++A Y + + GKGAK+ ++
Sbjct: 411 GIEVRGVAYDTMLESYVLDSTATRHDMDSLALKYLGQGTIRFEDIAGKGAKQLTFDQIAL 470
Query: 446 LE---HLAKKVKVLVDSEANIMQQLKA-NEQEELLFEMEQPLANVLAKMEIRGIKVKKNT 501
+ + A+ V + + Q+L+A ++L E+E PL VLA++E G V
Sbjct: 471 EQAGPYAAEDADVTLRLHQCLWQKLEAIPALAKVLKEIEMPLVPVLARIERHGALVDAKL 530
Query: 502 LNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTA 561
L E ++E + ++ L +E +ELAG+ FN+ SPKQLG +L++ LGLPV ++K K STA
Sbjct: 531 LGEQSLELGEKLQQLEREAHELAGEPFNLASPKQLGAILYDKLGLPV-LSKTAKGQPSTA 589
Query: 562 VDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRL 619
VL LA PL I+ +R + KL+ TY L I G+IHT Y Q +T TGRL
Sbjct: 590 ESVLADLAEQGYPLPQVIMRHRSLNKLKGTYTDKLPQQINPRTGRIHTSYHQAVTATGRL 649
Query: 620 SSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFK 679
SSSDPNLQNIP+R +GR IR+AFV E L+++DYSQIELR++AH+++D L+ AF+
Sbjct: 650 SSSDPNLQNIPIRTTEGRRIRQAFVAPE-GYRLVAADYSQIELRIMAHLAQDTSLLHAFR 708
Query: 680 EGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQY 739
D+H +TA VFG+ PE V+ + RR+AKA+NFG++YG+S FGL+ +G+ RK A+ Y
Sbjct: 709 NDLDVHRATAAEVFGV-APEAVSADQRRSAKAINFGLIYGMSAFGLARQIGVERKEAQAY 767
Query: 740 IDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSP 799
ID YF RYPG+ YME +A ++GYVETLF RR LP+I+S+N +R+ AERTAIN+P
Sbjct: 768 IDRYFARYPGVLAYMERTRAQAAEQGYVETLFGRRLYLPEIHSKNGALRKAAERTAINAP 827
Query: 800 IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESA 859
+QGSAADI+K AM+ +D L + G ++M+LQVHDE+VLEV +++ A++ + M A
Sbjct: 828 MQGSAADIIKRAMVTVDAWLLESGLDARMILQVHDELVLEVREDQVEALKAGLLPRMSGA 887
Query: 860 ISLSVPLIADENAGETWYEA 879
+L VPL+ + G W EA
Sbjct: 888 AALDVPLLVEAGVGGNWDEA 907
>gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella
oneidensis MR-1]
gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella
oneidensis MR-1]
Length = 922
Score = 488 bits (1255), Expect = e-136
Identities = 350/938 (37%), Positives = 504/938 (53%), Gaps = 86/938 (9%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
N L+L+DGSS +RA++A N+ G T A+YG ML +L R QPSHI V F
Sbjct: 7 NPLVLVDGSSYLYRAYYA----PPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAVVF 62
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR ++Y +YK R PD+ R Q + + + LG+ + EADD+IGT+A
Sbjct: 63 DAKGKTFRNDLYQEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGTIA 122
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
++ AS E+ + + +GDKD+ QL D N T++ + EE Y G+ P +
Sbjct: 123 RR--ASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKY-----GVGPDR 175
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIE-----AMKQSK-MKEN 237
ID ALMGDK+DNIPG+ +GEKT L +L+ GS+ + E A + SK M
Sbjct: 176 IIDFLALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVSELAFRGSKTMAAK 235
Query: 238 LINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKA----- 292
+I++ + LS LATI + + L + P D L + Y EM+FK++ A
Sbjct: 236 IIDNADMLRLSYELATIKTDVELEQDWHE-LTAKPADRDELIKCYGEMEFKRWLAEILDN 294
Query: 293 ---------------------ALGEETSQEDF--EVDFTE-VEQLK-TEMFSDN------ 321
+L ET + E E + +LK +F+ +
Sbjct: 295 KAPATIATATTTVETEADTTPSLALETQYDTILTEAQLDEWIAKLKQASLFAVDTETTSL 354
Query: 322 DFYYFEMLGDNYHVE-----------DLIGIAWGNSDTIYATSNVS-LLQEALFKKALSK 369
D+ E++G ++ VE D +G A D +A + +L++A KK
Sbjct: 355 DYMVAELVGMSFAVEAGKAAYLPLAHDYVG-APQQLDKQFALEKLRPILEDAKLKKV--- 410
Query: 370 PIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDD 428
+ K +L I L AFDT L Y+ S + + +A Y +
Sbjct: 411 ---GQNLKYDISVLANAGITLQGVAFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFE 467
Query: 429 AVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQL-----KANEQEELLFEMEQPL 483
+ GKGAK+ + LE A D + Q L K E + ++E PL
Sbjct: 468 DIAGKGAKQLTFNQIS-LETAAPYAAEDADITLRLHQHLWPRLEKEAELASVFTDIELPL 526
Query: 484 ANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFET 543
++L+ +E +G+ + L + + E + I+ L + Y++AG++FN++SPKQL L FE
Sbjct: 527 IHILSDIERQGVFIDSMLLGQQSEELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEK 586
Query: 544 LGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LED 602
LG PV + K K STA +VL LA PL ILE+R +TKL+STY L + +
Sbjct: 587 LGYPV-IKKTPKGAPSTAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKT 645
Query: 603 GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIEL 662
G++HT Y Q TGRLSSS+PNLQNIP+R +GR IR+AF+ E + L++DYSQIEL
Sbjct: 646 GRVHTSYHQANAATGRLSSSEPNLQNIPIRTVEGRRIRQAFIAPEGRKI-LAADYSQIEL 704
Query: 663 RVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISD 722
R++AH+S+D L+ AF EG DIH +TA VFG + ++VT RR AKAVNFG++YG+S
Sbjct: 705 RIMAHLSQDAGLLNAFAEGKDIHRATAAEVFGTDF-DSVTSEQRRRAKAVNFGLIYGMSA 763
Query: 723 FGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINS 782
FGL+ L IPR A+ YIDTYF RYPG+ YME A D GYV TLF RR LP+I
Sbjct: 764 FGLARQLDIPRNEAQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRD 823
Query: 783 RNFNIRQFAERTAINSPIQGSAADILKIAMINL-DRVLDKGGYKSKMLLQVHDEIVLEVP 841
RN RQ AER AIN+P+QG+AADI+K AMI++ D + + M++QVHDE+V EV
Sbjct: 824 RNAMRRQAAERAAINAPMQGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVD 883
Query: 842 NEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
++ +++ V + M A +L V L+A+ G+ W EA
Sbjct: 884 ADKAETLKQKVCELMAKAANLDVELLAEAGIGDNWDEA 921
>gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas
aeruginosa PA01]
gi|11348443|pir||F82958 DNA polymerase I PA5493 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas
aeruginosa PAO1]
Length = 913
Score = 485 bits (1248), Expect = e-135
Identities = 350/926 (37%), Positives = 514/926 (54%), Gaps = 72/926 (7%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DGSS +RAF AL ++G T A+ G ML + + S V FDA
Sbjct: 6 LVLVDGSSYLYRAFHAL----PPLTTSTGKPTGAVKGVLNMLLSLRKQYPDSPFAVVFDA 61
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR E++A+YK R PD+ R Q + + LG+ +E EADD+IGTLA+
Sbjct: 62 KGPTFRDELFAEYKANRPSMPDDLRVQVEPLHASVRALGLPLLCVEGVEADDVIGTLARS 121
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
+ A++ + + +GDKD+ QL D + + + G + EK G+ P ID
Sbjct: 122 SAAADR--PVVISTGDKDMAQLVDGHITLVNTMTG----SRLDVDGVKEKFGVGPELIID 175
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSE--------YGSLEGIYE-NIEAMK--QSKMK 235
ALMGDK DNIPGV +GEKT L LL+ Y SL+ + E I K +K++
Sbjct: 176 FLALMGDKVDNIPGVPGVGEKTALGLLTGVGGGLEVLYASLDKVPELPIRGAKGLPAKLE 235
Query: 236 ENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL- 294
EN +EQAFLS LATI + + + D LY G +AL Y E++FK + L
Sbjct: 236 EN----REQAFLSYQLATIKTDVELDVEI-DKLYPGEPQREALIALYRELEFKNWLDDLL 290
Query: 295 ---------GEETSQEDFEVDFTEV-------EQLKTEMFSDNDFYYFEMLGDNYHVEDL 338
GE + EVD+ V LK ++ + E + +
Sbjct: 291 REAKEAGENGEAETPIQAEVDYDVVLDQAGFDAWLKKLEEAELIAFDTETTSIDAQQAQV 350
Query: 339 IGIAW----GNSDTIYATSNVSLLQEALFKKALSKPIKTY--DFKRSK----------VL 382
+G+++ G + + + + E L + A+ + +K D K+ K VL
Sbjct: 351 VGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAVLRALKPLLEDPKKLKVGQHAKYDINVL 410
Query: 383 LNRFN-IDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP 440
N I L A+DT L Y+L ST + + ++A Y + + GKGAK+
Sbjct: 411 ANASTPIALRGVAYDTMLESYVLDSTATRHDMDSLALKYLGHSTIRFEDIAGKGAKQLTF 470
Query: 441 EKTRFLE---HLAKKVKVLVDSEANIMQQLKA-NEQEELLFEMEQPLANVLAKMEIRGIK 496
++ + + A+ V + + Q+L+A +L ++E PL VLA++E G
Sbjct: 471 DQIAIEQAGPYAAEDADVTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGAL 530
Query: 497 VKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKT 556
V N L + E + + L ++ Y+LAGQEFN+ SPKQLG +L++ LGLPV KT T
Sbjct: 531 VDANLLGIQSRELGEKMVALERQAYDLAGQEFNLGSPKQLGAILYDKLGLPV--LSKTAT 588
Query: 557 GY-STAVDVLERLAPISPLVTK-ILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDL 613
G STA VL LA + K I++YR ++KL+STY L + I G+IHT Y Q +
Sbjct: 589 GQPSTAEAVLAELAEQDFELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAV 648
Query: 614 TQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEH 673
TGRLSSSDPNLQNIP+R +GR IR+AFV + LL++DYSQIELR++AH++KD+
Sbjct: 649 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFVAPQGYK-LLAADYSQIELRIMAHLAKDDG 707
Query: 674 LIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPR 733
L+ AF+ D+H +TA VFG+ E+V+ + RR+AKA+NFG++YG+S FGL+ +G+ R
Sbjct: 708 LLDAFRHDLDVHRATAAEVFGVPL-EDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVER 766
Query: 734 KLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAER 793
K A+ YID YF RYPG+ YME +A ++G+VETLF RR LP+I+S+N +R+ AER
Sbjct: 767 KEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAER 826
Query: 794 TAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVT 853
TAIN+P+QG+AADI+K AM+ +D L + G ++++LQVHDE+VLEV + + + E +
Sbjct: 827 TAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQVCEGIR 886
Query: 854 KTMESAISLSVPLIADENAGETWYEA 879
M A +L VPL+ + G W EA
Sbjct: 887 PLMSGAATLDVPLVVEAGVGSNWDEA 912
>gi|16131704|ref|NP_418300.1| DNA polymerase I [Escherichia coli
K12]
gi|118825|sp|P00582|DPO1_ECOLI DNA polymerase I (POL I)
gi|67054|pir||DJECI DNA-directed DNA polymerase (EC 2.7.7.7) I -
Escherichia coli (strain K-12)
gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli]
gi|147312|gb|AAA24402.1| DNA polymerase I
gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli]
gi|1790294|gb|AAC76861.1| DNA polymerase I, 3' --> 5' polymerase,
5' --> 3' and 3' --> 5' exonuclease [Escherichia coli
K12]
Length = 928
Score = 484 bits (1245), Expect = e-135
Identities = 344/943 (36%), Positives = 508/943 (53%), Gaps = 88/943 (9%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RA Y+ N++G T A+YG ML ++ + +P+H V
Sbjct: 6 QNPLILVDGSSYLYRA----YHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R Q + + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A++AE + + + +GDKD+ QL N T++ + P ++ K G+ P
Sbjct: 122 AREAEKAGR--PVLISTGDKDMAQLVTPNITLINTMTNTI-----LGPEEVVNKYGVPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QSKMKE 236
ID ALMGD SDNIPGV +GEKT LL G L+ +Y E + M
Sbjct: 175 LIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAA 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFK----- 291
L +KE A+LS LATI + + E + P + L F + +FK++
Sbjct: 235 KLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLF-KKYEFKRWTADVEA 293
Query: 292 -----------AALGEETSQEDFEVDFT-------------EVEQLKTEM--FSDNDFYY 325
AA +ETS D + T + E LK + +
Sbjct: 294 GKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFA 353
Query: 326 FEMLGDNYH--VEDLIGIAWG-----------------NSDTIYATSNVSLLQEALFKKA 366
F+ D+ +L+G+++ D I + LL+ L +
Sbjct: 354 FDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEK 413
Query: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLD 425
K + + R +L + I+L AFDT L Y+L S + + ++A +
Sbjct: 414 ALKVGQNLKYDRG--ILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTI 471
Query: 426 TDDAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE- 478
T + + GKG + A+ E R+ A+ V + + L+ ++ +FE
Sbjct: 472 TFEEIAGKGKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPDLQKHKGPLNVFEN 528
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E PL VL+++E G+K+ L+ + E + L ++ +E+AG+EFN++S KQL
Sbjct: 529 IEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQT 588
Query: 539 LLFETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQD 597
+LFE G ++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L
Sbjct: 589 ILFEKQG--IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPL 646
Query: 598 YI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSD 656
I + G++HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED V++S+D
Sbjct: 647 MINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSAD 705
Query: 657 YSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGI 716
YSQIELR++AH+S+D+ L+ AF EG DIH +TA VFG+ E VT RR+AKA+NFG+
Sbjct: 706 YSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-ETVTSEQRRSAKAINFGL 764
Query: 717 VYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRS 776
+YG+S FGL+ L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR
Sbjct: 765 IYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLY 824
Query: 777 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEI 836
LPDI S N R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE+
Sbjct: 825 LPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDEL 884
Query: 837 VLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
V EV +++ A+ + + + ME+ L VPL+ + +GE W +A
Sbjct: 885 VFEVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQA 927
>gi|15804448|ref|NP_290488.1| DNA polymerase I, 3' --> 5'
polymerase, 5' --> 3' and 3' --> 5' exonuclease
[Escherichia coli O157:H7 EDL933]
gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli
O157:H7]
gi|25288524|pir||B91227 DNA polymerase I [imported] - Escherichia
coli (strain O157:H7, substrain RIMD 0509952)
gi|25288533|pir||H86073 DNA polymerase I [similarity] - Escherichia
coli (strain O157:H7, substrain EDL933)
gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I, 3' --> 5'
polymerase, 5' --> 3' and 3' --> 5' exonuclease
[Escherichia coli O157:H7 EDL933]
gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli
O157:H7]
Length = 928
Score = 484 bits (1245), Expect = e-135
Identities = 344/943 (36%), Positives = 508/943 (53%), Gaps = 88/943 (9%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RA Y+ N++G T A+YG ML ++ + +P+H V
Sbjct: 6 QNPLILVDGSSYLYRA----YHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R Q + + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A++AE + + + +GDKD+ QL N T++ + P ++ K G+ P
Sbjct: 122 AREAEKAGR--PVLISTGDKDMAQLVTPNITLINTMTNTI-----LGPEEVVNKYGVPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QSKMKE 236
ID ALMGD SDNIPGV +GEKT LL G L+ +Y E + M
Sbjct: 175 LIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAA 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFK----- 291
L +KE A+LS LATI + + E + P + L F + +FK++
Sbjct: 235 KLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLF-KKYEFKRWTADVEA 293
Query: 292 -----------AALGEETSQEDFEVDFT-------------EVEQLKTEM--FSDNDFYY 325
AA +ETS D + T + E LK + +
Sbjct: 294 GKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFA 353
Query: 326 FEMLGDNYH--VEDLIGIAWG-----------------NSDTIYATSNVSLLQEALFKKA 366
F+ D+ +L+G+++ D I + LL+ L +
Sbjct: 354 FDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKPLLEDEK 413
Query: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLD 425
K + + R +L + I+L AFDT L Y+L S + + ++A +
Sbjct: 414 ALKVGQNLKYDRG--ILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTI 471
Query: 426 TDDAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE- 478
T + + GKG + A+ E R+ A+ V + + L+ ++ +FE
Sbjct: 472 TFEEIAGKGKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPDLQKHKGPLNVFEN 528
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E PL VL+++E G+K+ L+ + E + L ++ +E+AG+EFN++S KQL
Sbjct: 529 IEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQT 588
Query: 539 LLFETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQD 597
+LFE G ++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L
Sbjct: 589 ILFEKQG--IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPL 646
Query: 598 YI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSD 656
I + G++HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED V++S+D
Sbjct: 647 MINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSAD 705
Query: 657 YSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGI 716
YSQIELR++AH+S+D+ L+ AF EG DIH +TA VFG+ E VT RR+AKA+NFG+
Sbjct: 706 YSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-ETVTSEQRRSAKAINFGL 764
Query: 717 VYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRS 776
+YG+S FGL+ L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR
Sbjct: 765 IYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLY 824
Query: 777 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEI 836
LPDI S N R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE+
Sbjct: 825 LPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDEL 884
Query: 837 VLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
V EV +++ A+ + + + ME+ L VPL+ + +GE W +A
Sbjct: 885 VFEVHRDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQA 927
>gi|30064847|ref|NP_839018.1| DNA polymerase I, 3 --> 5 polymerase,
5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a
str. 2457T]
gi|30043107|gb|AAP18829.1| DNA polymerase I, 3 --> 5 polymerase, 5
--> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str.
2457T]
Length = 928
Score = 483 bits (1244), Expect = e-135
Identities = 342/941 (36%), Positives = 511/941 (53%), Gaps = 84/941 (8%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RA Y+ N++G T A+YG ML ++ + +P+H V
Sbjct: 6 QNPLILVDGSSYLYRA----YHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R Q + + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A++AE + + + +GDKD+ QL N T++ + P ++ K G+ P
Sbjct: 122 AREAEKAGR--PVLISTGDKDMAQLVTPNITLINTMTNTI-----LGPEEVVNKYGVPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QSKMKE 236
ID ALMGD SDNIPGV +GEKT LL G L+ +Y E + M
Sbjct: 175 LIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAA 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKA---- 292
L +KE A+LS LATI + + E + P + L F + +FK++ A
Sbjct: 235 KLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLF-KKYEFKRWTADVEV 293
Query: 293 -----ALGEETSQEDFEVDFT-EVEQLKTEMFSDNDF---------------------YY 325
A G +T+ + E E ++ + S +++ +
Sbjct: 294 GKWLQAKGAKTAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFA 353
Query: 326 FEMLGDNYH--VEDLIGIAWG-----------NSDTIYATSNVSLLQEALFKKAL---SK 369
F+ D+ +L+G+++ D + A +S + K L K
Sbjct: 354 FDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELLKPLLEDEK 413
Query: 370 PIKT-YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTD 427
+K + K + +L + I+L AFDT L Y+L S + + ++A + T
Sbjct: 414 ALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITF 473
Query: 428 DAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE-ME 480
+ + GKG + A+ E R+ A+ V + + L+ ++ +FE +E
Sbjct: 474 EEIAGKGKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPDLQKHKGPLNVFENIE 530
Query: 481 QPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLL 540
PL VL+++E G+K+ L+ + E + L ++ +E+AG+EFN++S KQL +L
Sbjct: 531 MPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTIL 590
Query: 541 FETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI 599
FE G ++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L I
Sbjct: 591 FEKQG--IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMI 648
Query: 600 -LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYS 658
+ G++HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED V++S+DYS
Sbjct: 649 NPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSADYS 707
Query: 659 QIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVY 718
QIELR++AH+S+D+ L+ AF EG DIH +TA VFG+ E VT RR+AKA+NFG++Y
Sbjct: 708 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-ETVTSEQRRSAKAINFGLIY 766
Query: 719 GISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLP 778
G+S FGL+ L IPRK A++Y+D YFERYPG+ YME +AK+ GYVETL RR LP
Sbjct: 767 GMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLP 826
Query: 779 DINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVL 838
DI S N R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE+V
Sbjct: 827 DIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVF 886
Query: 839 EVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
EV +++ A+ + + + ME+ L VPL+ + +GE W +A
Sbjct: 887 EVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQA 927
>gi|24115152|ref|NP_709662.1| DNA polymerase I, 3' --> 5'
polymerase, 5' --> 3' and 3' --> 5' exonuclease
[Shigella flexneri 2a str. 301]
gi|24054427|gb|AAN45369.1|AE015400_8 DNA polymerase I, 3' --> 5'
polymerase, 5' --> 3' and 3' --> 5' exonuclease
[Shigella flexneri 2a str. 301]
Length = 928
Score = 483 bits (1243), Expect = e-135
Identities = 342/941 (36%), Positives = 511/941 (53%), Gaps = 84/941 (8%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RA Y+ N++G T A+YG ML ++ + +P+H V
Sbjct: 6 QNPLILVDGSSYLYRA----YHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYKPTHAAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R Q + + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A++AE + + + +GDKD+ QL N T++ + P ++ K G+ P
Sbjct: 122 AREAEKAGR--PVLISTGDKDMAQLVTPNITLINTMTNTI-----LGPEEVVNKYGVPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QSKMKE 236
ID ALMGD SDNIPGV +GEKT LL G L+ +Y E + M
Sbjct: 175 LIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLSFRGAKTMAA 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKA---- 292
L +KE A+LS LATI + + E + P + L F + +FK++ A
Sbjct: 235 KLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELLGLF-KKYEFKRWTADVEV 293
Query: 293 -----ALGEETSQEDFEVDFT-EVEQLKTEMFSDNDF---------------------YY 325
A G +T+ + E E ++ + S +++ +
Sbjct: 294 GKWLQAKGAKTAAKPQETSVADEAPEVTATVISYDNYVTILDEETLKAWIAKLEKAPVFA 353
Query: 326 FEMLGDNYH--VEDLIGIAWG-----------NSDTIYATSNVSLLQEALFKKAL---SK 369
F+ D+ +L+G+++ D + A +S + K L K
Sbjct: 354 FDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISHERALELLKPLLEDEK 413
Query: 370 PIKT-YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTD 427
+K + K + +L + I+L AFDT L Y+L S + + ++A + T
Sbjct: 414 ALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITF 473
Query: 428 DAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE-ME 480
+ + GKG + A+ E R+ A+ V + + L+ ++ +FE +E
Sbjct: 474 EEIAGKGKNQLTFNQIALEEAGRY---AAEHADVTLQLHLKMWPDLQKHKGPLNVFENIE 530
Query: 481 QPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLL 540
PL VL+++E G+K+ L+ + E + L ++ +E+AG+EFN++S KQL +L
Sbjct: 531 MPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTIL 590
Query: 541 FETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI 599
FE G ++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L I
Sbjct: 591 FEKQG--IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMI 648
Query: 600 -LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYS 658
+ G++HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED V++S+DYS
Sbjct: 649 NPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSADYS 707
Query: 659 QIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVY 718
QIELR++AH+S+D+ L+ AF EG DIH +TA VFG+ E VT RR+AKA+NFG++Y
Sbjct: 708 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-ETVTSEQRRSAKAINFGLIY 766
Query: 719 GISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLP 778
G+S FGL+ L IPRK A++Y+D YFERYPG+ YME +AK+ GYVETL RR LP
Sbjct: 767 GMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLP 826
Query: 779 DINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVL 838
DI S N R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE+V
Sbjct: 827 DIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVF 886
Query: 839 EVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
EV +++ A+ + + + ME+ L VPL+ + +GE W +A
Sbjct: 887 EVHKDDVDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQA 927
>gi|23125316|ref|ZP_00107254.1| hypothetical protein [Nostoc
punctiforme]
Length = 978
Score = 481 bits (1239), Expect = e-134
Identities = 330/978 (33%), Positives = 515/978 (51%), Gaps = 120/978 (12%)
Query: 8 LLIDGSSVAFRAFFALYNQID-RFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
+L+DG S+A+R++FA D + +G+ T+ +GF L ++ QP + +AFD
Sbjct: 16 ILVDGHSLAYRSYFAFAKGRDGGLRTKAGIPTSICFGFVKCLLEVMATQQPQAMAIAFDL 75
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
G+ TFR E YK R +TP++F + + L+ I + YEADD++GTLA++
Sbjct: 76 GEATFRHEADETYKADRKETPEDFIPDLANLHELLNGFNIPIFTAPGYEADDVLGTLAQR 135
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTN---TVVEIS----KKGVAEFEEFTPAYLMEKMGI 179
A+ + + +++GD+DL QL D++ TV+ S K+ EF + EKMG+
Sbjct: 136 VTAAG--YRVKILTGDRDLFQLIDSDKEITVLNFSPDAIKRSTNSITEFEAEQVKEKMGV 193
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
PSQ ID KAL GDKSDNIPGV IGEKT ++LL+ YGSL+ IY ++ +K + K+ L
Sbjct: 194 LPSQIIDFKALCGDKSDNIPGVKGIGEKTAVQLLNTYGSLDNIYAALDEIKGATQKK-LA 252
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETS 299
+ +E A S+ LATI + PI I LED G D LS ++++FK F + +
Sbjct: 253 SGREDADKSRYLATIVLDVPIEINLEDCKLKG-FDTSVLSPILEKLEFKSFLGKIND--L 309
Query: 300 QEDFEVDFTEVEQLKTEMFS---------DNDFYYF------------------EMLGDN 332
Q+ F E ++ KT++ + DND ++F ++
Sbjct: 310 QQRFGGKVEEKQEAKTDVINPKSELRDDEDNDLWFFSASDTAAVPQQSTSPITPRIINTE 369
Query: 333 YHVEDL-----------IGIAWGNSDTIYATSNVSL------------------------ 357
+ +L I +AW T + L
Sbjct: 370 AKLTELVKLLQTFTTPDIPVAWDTETTALEPRDADLVGIGCCWGMQPDEVAYIPLGHKTG 429
Query: 358 --LQEALFKKALSKPIKTYDFKRS-------KVLLNRFNIDLPEPAFDTRLAKYLLSTTE 408
L + L + L +++ D+ ++ +++L I+L FD LA Y+L+
Sbjct: 430 ENLHKDLVLEGLRPILESADYPKALQNAKFDRLVLKCQGINLAGVVFDPMLASYILNPDS 489
Query: 409 DNLVSTIARLYTNLPLDTDDAVYGKGAKRA---IPEKTRFLEHLAKKVKVLVDSEANIMQ 465
+ + + + Y L + + KG A IP + A LV + +
Sbjct: 490 SHNLMDLGQRYLGLIAKSYLDLVPKGKTIADIDIPSVADYCGMDAYSTFGLV---PKLRE 546
Query: 466 QL-KANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA 524
+L K +LL E+EQPL VLA+ME G+++ L E++ + + L +E ++A
Sbjct: 547 ELDKIPTLSKLLVEVEQPLEAVLAQMEYTGVRINSAYLKELSQHLETELARLKEEATKIA 606
Query: 525 GQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAP--ISPLVTKILEYR 582
G+ FN+ SPKQL ++LFE LGL + ++K +TG+ST LE+L S V I+EYR
Sbjct: 607 GENFNLGSPKQLSQILFEKLGLSTKHSRKIQTGFSTDAATLEKLQEDDKSGFVEAIIEYR 666
Query: 583 QITKLQSTYIIGLQDYILEDG-KIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRK 641
++KL+STY+ L + D ++HT + Q T TGRLSSS+PNLQNIP+R R IRK
Sbjct: 667 TLSKLKSTYVDALPALVRPDTQRVHTDFNQAATSTGRLSSSNPNLQNIPIRTAFSRQIRK 726
Query: 642 AFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENV 701
AF+P E +++++DYSQIELR+LAH+S++ L+ A+++ D+HT T VF EK +
Sbjct: 727 AFLP-EAGWLMVAADYSQIELRILAHLSQEPILVQAYQQNEDVHTVTGRLVFEKEK---I 782
Query: 702 TPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREA 761
T +R AK +NFG++YG+ S + GI + +A ++I + ERYP + Y+E V +EA
Sbjct: 783 TSEERGIAKTINFGVIYGMGSLRFSRSTGIDKNIANEFIKRFNERYPKVFAYLEQVKKEA 842
Query: 762 KDKGYVETLFHRR----------RSLPDINSRNFNIRQFAE---------RTAINSPIQG 802
GYVET+ RR R L N + ++ + R+A N+PIQG
Sbjct: 843 IALGYVETILGRRRYFDFTNNSLRRLKGSNPEDIDLSKLKNLGPYDAGLLRSAANAPIQG 902
Query: 803 SAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISL 862
S ADI+KIAM+ L VL Y++++LLQVHDE+V E+P +E ++ + ME+A+ L
Sbjct: 903 SNADIIKIAMVRLHEVLKN--YQARLLLQVHDELVFEIPPDEWEELQPQIKSVMENAVQL 960
Query: 863 SVPLIADENAGETWYEAK 880
SVPL+ + GE W + K
Sbjct: 961 SVPLLVEARVGENWMDTK 978
>gi|16767264|ref|NP_462879.1| DNA polymerase I, 3' --> 5'
polymerase, 5' --> 3' and 3' --> 5' exonuclease
[Salmonella typhimurium LT2]
gi|20141441|sp|Q9F173|DPO1_SALTY DNA polymerase I (POL I)
gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella typhimurium
LT2]
Length = 928
Score = 478 bits (1230), Expect = e-133
Identities = 338/944 (35%), Positives = 505/944 (52%), Gaps = 90/944 (9%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RA Y+ N++G T A+YG ML ++ + QP+H V
Sbjct: 6 ENPLILVDGSSYLYRA----YHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R Q + + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A++AE + + +GDKD+ QL N T++ + P ++ K G+ P
Sbjct: 122 AREAEKVGR--PVLISTGDKDMAQLVTPNITLINTMTNTI-----LGPDEVVNKYGVPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QSKMKE 236
ID ALMGD SDNIPGV +GEKT LL G L+ +Y E + M
Sbjct: 175 LIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAG 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK-------- 288
L +K+ A+LS LATI + + E + P + L F + +FK
Sbjct: 235 KLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLF-KKYEFKRWTADVES 293
Query: 289 ----QFKAALGEETSQEDFEVDFTEVEQLKT-------------------EMFSDNDFYY 325
Q K A QE +D + E E +
Sbjct: 294 GKWLQAKGAKPAAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAPVFA 353
Query: 326 FEMLGDNYH--VEDLIGIAWG-----------------NSDTIYATSNVSLLQEALFKKA 366
F+ D+ +L+G+++ D I + LL+ L +
Sbjct: 354 FDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELLKPLLEDEK 413
Query: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT--EDNLVSTIARLYTNLPL 424
+ K + + R +L + I+L AFDT L Y+L++ ++ S R + +
Sbjct: 414 VRKVGQNLKYDRG--VLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTI 471
Query: 425 DTDDAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE 478
+D + GKG + A+ E R+ A+ V + + +L+ ++ +FE
Sbjct: 472 TFED-IAGKGKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPELQQHKGPLNVFE 527
Query: 479 -MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLG 537
+E PL VL+++E G+K+ L++ + E + L ++ +++AG+ FN++S KQL
Sbjct: 528 NIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQ 587
Query: 538 KLLFETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
+LFE G ++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L
Sbjct: 588 TILFEKQG--IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLP 645
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
I + G++HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED +++S+
Sbjct: 646 LMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YLIVSA 704
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELR++AH+S+D+ L+ AF EG DIH +TA VFG+ ++VT RR+AKA+NFG
Sbjct: 705 DYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-DSVTGEQRRSAKAINFG 763
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
++YG+S FGLS L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR
Sbjct: 764 LIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL 823
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
LPDI S N R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE
Sbjct: 824 YLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDE 883
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+V EV +++ A+ + + + ME+ + VPL+ + +GE W +A
Sbjct: 884 LVFEVHKDDLDAVAKRIHQLMENCTRIDVPLLVEVGSGENWDQA 927
>gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes
bacterium endosymbiont of Bemisia tabaci]
Length = 939
Score = 477 bits (1228), Expect = e-133
Identities = 328/949 (34%), Positives = 480/949 (50%), Gaps = 105/949 (11%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KL L+DG S+ +RA FAL GL T AI GF L +L + +P+H++VAFD
Sbjct: 7 KLFLLDGMSLIYRAHFALGKAAT--TTAQGLKTGAILGFVNTLVALLEKEKPTHLIVAFD 64
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
+ TFR ++ YK R P+E PYI+ L+ GI YEADD++GTLAK
Sbjct: 65 GKEKTFRHALFPAYKSHRPVQPEEISIAIPYIKSILEGFGILAITYSGYEADDLLGTLAK 124
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGI------ 179
+A ++S DKDL Q+ N + + P+ EK I
Sbjct: 125 KAAVMGCR--TYIMSTDKDLAQIVGDNIYL------------YKPSSYGEKSTILGEKEI 170
Query: 180 -------TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQS 232
P Q D+ AL GD SD IPG+ IG+KT KL+ E+ +LE I + M
Sbjct: 171 LAQWEIARPEQVRDILALEGDPSDFIPGIPSIGKKTARKLIKEFDNLENILAH-SHMLTG 229
Query: 233 KMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKA 292
K+K NLI +Q LSK LATI PIT+ LE Y GP +K L + ++FKQ K
Sbjct: 230 KLKANLIQYADQGILSKELATIRTNVPITLDLEKCHYQGPNKVK-LEPIFSLLEFKQLKQ 288
Query: 293 AL---------------------------------------GEETSQEDFEVD-FTEVEQ 312
L T++ E D + +E
Sbjct: 289 RLFGKPNPEKATNQPVGLFDGINPMAKSQENNHSNGHGLDRQPHTTEGQHEQDAYALIET 348
Query: 313 LKT-----EMFSDNDFYYFEM--LGDNYHVEDLIGIAW----GNSDTIYATSNVSLLQEA 361
L E + F++ G + H+ DL+GIA+ G + I N + Q
Sbjct: 349 LPACEKLLEKLESATKWAFDIATTGMDPHLADLLGIAFAYQPGTAYYIALPPNKAAAQPF 408
Query: 362 LFKKALSKPIKT--------YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVS 413
L AL +P+ ++ K + +++ R + + P FDT +A L++ D+ ++
Sbjct: 409 L---ALLQPLFQRTDVLKVGHNLKNALIVMQRHGLSIAPPLFDTMIAHGLVAADMDHHLT 465
Query: 414 TIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQE 473
T++ Y N Y K RA E + + +++ I Q L+ ++
Sbjct: 466 TLSEQYLN------HRSYLKPPNRAEKESEGIKNYAGEGADLVLHIYPKIAQALREHKVA 519
Query: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSP 533
L + +E PL VL ME+ G+ + L + E + + L ++IY LA FNI+SP
Sbjct: 520 TLFYRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTLAQTTFNIDSP 579
Query: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYII 593
KQLG +LFE L L + K Y+T +L +L+ + P+V I+EYR KL+STY+
Sbjct: 580 KQLGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYRTWQKLRSTYVD 639
Query: 594 GLQDYILE-DGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVL 652
L + D ++H Y Q + TGRLS++ PNLQ IP+R GR +RKAF+P + L
Sbjct: 640 ALPTLLHPIDQRLHATYHQTVVTTGRLSATGPNLQQIPIRTPTGRALRKAFIPHQKGDCL 699
Query: 653 LSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAV 712
S+DYSQIELR++A ++D +I AF+ DIH TA ++F K V R+ AK
Sbjct: 700 FSADYSQIELRIMAAYAQDTTMIMAFQSDQDIHQITAQKLF---KTVIVDQEMRQKAKIA 756
Query: 713 NFGIVYGISDFGLSHNL-GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
NFGI+YGIS FGLS + + RK A + I+ YFE +PGIK Y++ + A+ GYV TL
Sbjct: 757 NFGIIYGISPFGLSERMEHLSRKEAAELIEAYFEAFPGIKTYIDDSIAHAEANGYVRTLL 816
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQ 831
R+R LPD+ + N R A R AIN+PIQGSAA+++K+AMI++ L+K +K+++Q
Sbjct: 817 GRKRFLPDLYASNPTTRGVARRNAINTPIQGSAAEMIKLAMIHIQDWLEKHKLSTKLIIQ 876
Query: 832 VHDEIVLEVPNEEIGAIRELVTKTMESAISL-SVPLIADENAGETWYEA 879
VHDE+V VP EI I+ + M +A+ L +VP+ + N G W EA
Sbjct: 877 VHDELVFNVPRSEIADIQHHIPLLMATALPLENVPIKVNWNIGANWLEA 925
>gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica
subsp. enterica serovar Typhi Ty2]
gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica
subsp. enterica serovar Typhi Ty2]
Length = 928
Score = 477 bits (1228), Expect = e-133
Identities = 338/944 (35%), Positives = 505/944 (52%), Gaps = 90/944 (9%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RA Y+ N++G T A+YG ML ++ + QP+H V
Sbjct: 6 ENPLILVDGSSYLYRA----YHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R Q + + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAIVKAMGLPLLAVSGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A++AE + + +GDKD+ QL N T++ + P ++ K G+ P
Sbjct: 122 AREAEKVGR--PVLISTGDKDMAQLVTQNITLINTMTNTI-----LGPDEVVNKYGVPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QSKMKE 236
ID ALMGD SDNIPGV +GEKT LL G L+ +Y E + M
Sbjct: 175 LIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAG 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK-------- 288
L +K+ A+LS LATI + + E + P + L F + +FK
Sbjct: 235 KLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLF-KKYEFKRWTADVEA 293
Query: 289 ----QFKAALGEETSQEDFEVDFTEVEQLKT-------------------EMFSDNDFYY 325
Q K A QE +D + E E +
Sbjct: 294 GKWLQAKGAKPAAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAPVFA 353
Query: 326 FEMLGDNYH--VEDLIGIAWG-----------------NSDTIYATSNVSLLQEALFKKA 366
F+ D+ +L+G+++ D I + LL+ L +
Sbjct: 354 FDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELLKPLLEDEK 413
Query: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT--EDNLVSTIARLYTNLPL 424
+ K + + R +L + I+L AFDT L Y+L++ ++ S R + +
Sbjct: 414 VRKVGQNLKYDRG--VLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTI 471
Query: 425 DTDDAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE 478
+D + GKG + A+ E R+ A+ V + + +L+ ++ +FE
Sbjct: 472 TFED-IAGKGKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPELQQHKGPLNVFE 527
Query: 479 -MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLG 537
+E PL VL+++E G+K+ L++ + E + L ++ +++AG+ FN++S KQL
Sbjct: 528 NIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQ 587
Query: 538 KLLFETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
+LFE G ++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L
Sbjct: 588 TILFEKQG--IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLP 645
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
I + G++HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED +++S+
Sbjct: 646 LMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YLIVSA 704
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELR++AH+S+D+ L+ AF EG DIH +TA VFG+ ++VT RR+AKA+NFG
Sbjct: 705 DYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-DSVTGEQRRSAKAINFG 763
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
++YG+S FGLS L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR
Sbjct: 764 LIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL 823
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
LPDI S N R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE
Sbjct: 824 YLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDE 883
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+V EV +++ A+ + + + ME+ + VPL+ + +GE W +A
Sbjct: 884 LVFEVHKDDLDAVAKRIHQLMENCTRIDVPLLVEVGSGENWDQA 927
>gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella
typhimurium]
Length = 928
Score = 476 bits (1225), Expect = e-133
Identities = 337/944 (35%), Positives = 504/944 (52%), Gaps = 90/944 (9%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RA Y+ N++G T A+YG ML ++ + QP+H V
Sbjct: 6 ENPLILVDGSSYLYRA----YHAFPPLTNSAGEPTGAMYGVLNMLRSLIMQYQPTHAAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R Q + + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAMGLPLLAVSGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A++AE + + +GDKD+ QL N T++ + P ++ K G+ P
Sbjct: 122 AREAEKVGR--PVLISTGDKDMAQLVTPNITLINTMTNTI-----LGPDEVVNKYGVPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QSKMKE 236
ID ALMGD SDNIPGV +GEKT LL G L+ +Y E + M
Sbjct: 175 LIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEPEKIAGLTFRGAKTMAG 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK-------- 288
L +K+ A+LS LATI + + E + P + L F + +FK
Sbjct: 235 KLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELLGLF-KKYEFKRWTADVES 293
Query: 289 ----QFKAALGEETSQEDFEVDFTEVEQLKT-------------------EMFSDNDFYY 325
Q K A QE +D + E E +
Sbjct: 294 GKWLQAKGAKPAAKPQETVVIDESPSEPAAALSYENYVTILDDVTLESWIEKLKKAPVFA 353
Query: 326 FEMLGDNYH--VEDLIGIAWG-----------------NSDTIYATSNVSLLQEALFKKA 366
F+ D+ +L+G+++ D I + LL+ L +
Sbjct: 354 FDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDAPDQISRQRALELLKPLLEDEK 413
Query: 367 LSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT--EDNLVSTIARLYTNLPL 424
+ K + + R +L + I+L AFDT L Y+L++ ++ S R + +
Sbjct: 414 VRKVGQNLKYDRG--VLQNYGIELRGIAFDTMLESYILNSVAGRHDMDSLSDRWLKHKTI 471
Query: 425 DTDDAVYGKGAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE 478
+D + GKG + A+ E R+ A+ V + + +L+ ++ +FE
Sbjct: 472 TFED-IAGKGKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPELQQHKGPLNVFE 527
Query: 479 -MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLG 537
+E PL VL+++E G+K+ L++ + E + L ++ +++AG+ FN++S KQL
Sbjct: 528 NIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLSSTKQLQ 587
Query: 538 KLLFETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
+LFE G ++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L
Sbjct: 588 TILFEKQG--IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLP 645
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
I + G++HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED +++S+
Sbjct: 646 LMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YLIVSA 704
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELR++AH+S+D+ L+ AF EG DIH +TA VFG+ ++VT RR+AKA+NFG
Sbjct: 705 DYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-DSVTREQRRSAKAINFG 763
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
++YG+S FGLS L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR
Sbjct: 764 LIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRL 823
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
LPDI S N R AER AIN+P QG+AADI+K AMI +D + + +M++QVHDE
Sbjct: 824 YLPDIKSSNAARRAGAERAAINAPTQGTAADIIKRAMIAVDAWIQAEQPRVRMIMQVHDE 883
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+V EV +++ A+ + + + ME+ + VPL+ + +GE W +A
Sbjct: 884 LVFEVHKDDLDAVAKRIHQLMENCTRIDVPLLVEVGSGENWDQA 927
>gi|22986599|ref|ZP_00031693.1| hypothetical protein [Burkholderia
fungorum]
Length = 913
Score = 470 bits (1210), Expect = e-131
Identities = 322/919 (35%), Positives = 498/919 (54%), Gaps = 64/919 (6%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
LLL+DGSS +RA+ A+ + + G T A+YG ML + V + FDA
Sbjct: 12 LLLVDGSSYLYRAYHAMPD----LRGPDGGPTGALYGMINMLRRMRKEVTAEYSACVFDA 67
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR + YADYK R PD+ Q I + LG +E EADD+IGTL+ +
Sbjct: 68 KGKTFRDDWYADYKANRPSMPDDLSRQIEPIHVAVRALGWPLLMIEGVEADDVIGTLSTE 127
Query: 127 AEASNEHFDITVVSGDKDLIQL-TDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
AE ++ V +GDKDL QL +D T++ E+ A ++ K G+ P + I
Sbjct: 128 AEKRG--MNVIVSTGDKDLAQLVSDHVTLINTMTN-----EKLDRAGVLAKFGVPPERII 180
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D +L+GD DN+PGV K G KT +K L+++ SL+GI + + +K + + +NL +
Sbjct: 181 DYLSLVGDTVDNVPGVEKCGPKTAVKWLTQFDSLDGIVAHADEIKGA-VGDNLRRALDFL 239
Query: 246 FLSKTLATINIASPIT---IGLEDILYSGPQDIKALSQFYDEMDFKQF-------KAALG 295
++K L T+ +T + + + L S P+ L + + FK + A G
Sbjct: 240 PMAKKLVTVERNCDLTDHIVSIGESLQSQPESRAELREVFTRHGFKTWLREVEIADAVEG 299
Query: 296 EET------------------SQEDFE-----VDFTEVEQLKTEMFSDNDFYYFEMLGDN 332
ET + E F+ ++ E+ TE S D +++G +
Sbjct: 300 PETDVPPALSVDHERHYDTVQTWEQFDAWLGKINAAELTSFDTETTS-LDPMIAQIVGLS 358
Query: 333 YHVE----DLIGIAWGNSDTIYATSNVSLLQ--EALFKKALSKPIKTYDFKRSKVLLNRF 386
VE + +A D +L + + A K + + K + +L +
Sbjct: 359 LSVEAGRAAYVPLAHRGPDAPVQLPRDEVLARLKPWLESAGHKKVGQH-LKYDEQVLANY 417
Query: 387 NIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKT--- 443
I++ DT L Y++ + + + ++A + + + V GKGA + ++
Sbjct: 418 GIEMRGIEHDTLLQSYVVESHRTHDMDSLALRHLGVKTIKYEEVAGKGAGQIGFDEVALD 477
Query: 444 RFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKMEIRGIKVKKNTL 502
+ E+ A+ + + + Q+ A + + ++ ++E P + VL KME G+ + L
Sbjct: 478 KAAEYAAEDADITLRLHQVLYPQVAAEKTLQYVYHDIELPTSRVLRKMERTGVLIDSEKL 537
Query: 503 NEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGY-STA 561
+ + E + L E Y LAG EFN+ SPKQ+G++ FE L LPV KKT +G ST
Sbjct: 538 RQQSSEIATRLIQLESEAYVLAGGEFNLGSPKQIGQIFFEKLELPV--VKKTPSGAPSTD 595
Query: 562 VDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLS 620
+VL++LA PL +LE+R ++KL+STY L + G++HT Y Q + TGRL+
Sbjct: 596 EEVLQKLAEDFPLPKILLEHRGLSKLKSTYTDKLPRMVNATTGRVHTNYAQAVAVTGRLA 655
Query: 621 SSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKE 680
S+DPNLQNIPVR +GR IR+AF+ + L+S+DYSQIELR++AHIS DE L+ +F +
Sbjct: 656 SNDPNLQNIPVRTGEGRRIREAFIAPAGHK-LVSADYSQIELRIMAHISGDESLLHSFSQ 714
Query: 681 GADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYI 740
G DIH +TA +F + P V+ + RR AK +NFG++YG+S FGL+ NLGI R AK YI
Sbjct: 715 GEDIHRATAAEIFSV-TPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYI 773
Query: 741 DTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPI 800
D YF RYPG+ YM+ AK KGYVET+F RR LP+IN N RQ AER AIN+P+
Sbjct: 774 DRYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPM 833
Query: 801 QGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAI 860
QG+AAD++K++MI + + +++ ++M++QVHDE++LEVP+ E+ +R+ + + M
Sbjct: 834 QGTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDELILEVPDAELSDVRKRLPELMCGVA 893
Query: 861 SLSVPLIADENAGETWYEA 879
L VPL+A+ AG W EA
Sbjct: 894 DLKVPLVAEVGAGLNWEEA 912
>gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 911
Score = 460 bits (1183), Expect = e-128
Identities = 337/928 (36%), Positives = 514/928 (55%), Gaps = 72/928 (7%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
K +L+D S++ +RA+FA N R KN T A+YGF L I+ +P ++ AFD
Sbjct: 3 KAVLLDVSAIMYRAYFA--NMNFRTKNEP---TGAVYGFINTLLSIINEFKPDYMAAAFD 57
Query: 66 AGKTTF-RTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
+++ RTE+Y+DYK R P++ +Q P I + L+ I Y++E YEADD++G+LA
Sbjct: 58 VKRSSLKRTEIYSDYKSNRQSAPEDLIKQIPRIEEALEAFNINRYKIEGYEADDVLGSLA 117
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEF----TPAYLMEKMGIT 180
K+ + + ++ +V+GDKDL QL + N V + KG E E+F T ++ +G+
Sbjct: 118 KK--LAKQDIEVIIVTGDKDLSQLVEKNITVALLGKG-TEGEKFGTLKTSDDVVNYLGVV 174
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQ-----SKMK 235
P + DL L+GDKSD IPGVTKIGEK L + S+Y SLE IYENI+ +K +
Sbjct: 175 PEKIPDLFGLIGDKSDGIPGVTKIGEKKALSIFSQYDSLEKIYENIDNLKSIDGIGPSLI 234
Query: 236 ENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALG 295
+NLIN+K+ AF+S+ LA I IT+ + + Y D + L ++FK F LG
Sbjct: 235 KNLINEKDIAFMSRELAKIFTNLDITVEEDGLQYG--MDREKLYSLCKVLEFKMFIKKLG 292
Query: 296 -EETSQ--------------------EDFEVDFTEVEQL----KTEMFSDND-------- 322
EE Q E+ ++FT+ L + + DN+
Sbjct: 293 LEEKPQNPTLFSIENLEEKKESPKIVEEENIEFTKEINLDLSNRELLIIDNENNLNEQKE 352
Query: 323 -FYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEALFKKALSKPIKTYDFK---- 377
++ + Y+ I ++ + D + ++ LL + + + + K I D K
Sbjct: 353 YLTNYKKIASIYYEGLGIILSTEDKDFYFPLNHGGLLAKNIDRNLVVKFISELDIKFISY 412
Query: 378 RSKVLLNRFNIDLPEPAFDTRLAKYLLST-TEDNLVSTIARLYTNLPLDTDDAVYGKGAK 436
K LLN I D +A +L+S+ T+ + + I Y+ L +GK
Sbjct: 413 NFKALLN-LGISFKSMYMDMMIAYHLISSQTKIDPIIPITE-YSKLEPKDFKTAFGKVNV 470
Query: 437 RAIPEK--TRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRG 494
I + +++L ++ + + D E N + LK + ++L E E PL VL+ ME +G
Sbjct: 471 ELITAQDFSKYLSDISIGILAIYD-ELNYL--LKKEDLYKILMENEMPLIPVLSLMERKG 527
Query: 495 IKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKT 554
I++ ++E +K + + + IYE AG+EFNINSPKQLG +LF L LP KKT
Sbjct: 528 IEIDVQYFKNYSLELEKELLKVEKAIYEEAGEEFNINSPKQLGDILFVKLNLP--SGKKT 585
Query: 555 KTGYSTAVDVLERLAPISPLVTK-ILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDL 613
KTGYST V VLE L + + +L+YR++ KL++TY+ L + E+ +IHT + Q
Sbjct: 586 KTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTSFNQIG 645
Query: 614 TQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEH 673
T TGRLSSS+PNLQNIPV+ + G IR+ F+ E VL+S DYSQ+ELRVL +SKDE+
Sbjct: 646 TATGRLSSSEPNLQNIPVKTDDGIKIREGFIAGE-GKVLMSIDYSQVELRVLTSMSKDEN 704
Query: 674 LIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPR 733
LI A++E D+H TA R+F + E V+ R AK +NF I+YG + FGL+ L IP
Sbjct: 705 LIEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPV 764
Query: 734 KLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAER 793
K A +YI YFE+YP + + + V+ ++ GYV+TLF R+R + I+S+N I+ AER
Sbjct: 765 KDASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAER 824
Query: 794 TAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVT 853
A+N+ IQG+AA++LK M+ + +L K +LLQVHDE++ EV + ++
Sbjct: 825 MAVNTVIQGTAAEVLKKVMVKVYDIL-KDKEDIALLLQVHDELIFEVEKNSVEKYSGILA 883
Query: 854 KTMESAISLS-VPLIADENAGETWYEAK 880
M++ + L V L + N G+ W EAK
Sbjct: 884 DIMKNTVQLEDVKLNININIGKNWAEAK 911
>gi|14916559|sp|Q9RAA9|DPO1_RICFE DNA polymerase I (POL I)
gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis]
Length = 922
Score = 459 bits (1180), Expect = e-127
Identities = 324/935 (34%), Positives = 492/935 (51%), Gaps = 72/935 (7%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA++A + G A+YGF ML +L +P H+
Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQ----QPLTSPKGEPVGALYGFASMLLKLLSDFKPKHV 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD+G FR +Y +YK R P++ Q P +R L E YEADDII
Sbjct: 57 AVVFDSGGKNFRHHIYPEYKANRPPPPEDLVVQLPLVRDVASNLNFPILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A + A E D+ V+S DKDL+QL N + KG + T +++K G T
Sbjct: 117 ATFAAKTAALGE--DVVVISSDKDLLQLMGENIKIYDPLKG----KYITEDDVVKKFGTT 170
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
+ ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ ++E + K +E L N
Sbjct: 171 SDKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLEQVSSLKQRETLQN 230
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQ-FKAA-----L 294
KE A +S L ++ + L ++ +S P K L+ F E FK +K A +
Sbjct: 231 SKEAALISWQLIGLDSNVDLDFQLNNLEWSPPNSDK-LTGFLQEYGFKSLYKRAENLFDI 289
Query: 295 GEETSQEDFEVDFTEVEQL-----------KTEMFSDNDFYYFEMLGDNYHV-------- 335
+E E TE +++ K E Y + GDN +
Sbjct: 290 KINDHKEIVENKVTEAKEISNASELADFAKKAEKIGIFGIYLLQHKGDNVALILSLQNQS 349
Query: 336 ---------EDLIGIAWGNSDTIYATSNVSLLQEALFKKALS--KPIKTYDFKRSKVLLN 384
DL N++ ++ +LL + +K KP+ + ++S +
Sbjct: 350 YIIKISNTSHDLFSYNTKNNNDWFSDIIFNLLTDKSIRKITYSLKPLLKFYAEQSHEITA 409
Query: 385 RFNIDLPEPAFDTRLAKYLL---STTEDNLVSTIARLYTNLPLDTD---DAVY------- 431
+++L + A L++ L + EDN + DT+ A Y
Sbjct: 410 IEDLELMQYALSAGLSQKNLFEEALKEDNRHLSKPAYREEFKGDTEALATAAYKSVREDA 469
Query: 432 GKGAKRAIPEKTRF------LEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLAN 485
G+ +P +T+F + A+ V + +LK N+ L ++ P+
Sbjct: 470 STGSTSKLPLETKFGKMSNVINESARIVAEFTSLYKQNILELKDNKAFRLYSNIDLPICF 529
Query: 486 VLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLG 545
+L KME GIKV N LN+++ E I L +EI+ L+G +FNI SPKQLG++LFE +
Sbjct: 530 ILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEIFALSGTKFNIGSPKQLGEILFEKMQ 589
Query: 546 LPVEMTKKTKTGYSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYILE-DG 603
LP + YST ++LE+L+ + +L +RQ+TKL++TY L I
Sbjct: 590 LPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNITH 649
Query: 604 KIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELR 663
++HT ++Q T TGRLSS +PNLQN+P+R +G IR+AF+ +E+ L+S+DYSQIELR
Sbjct: 650 RVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFI-AEEGYKLISADYSQIELR 708
Query: 664 VLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDF 723
+L+HI+ + L AF DIHT TA ++F ++K E +T RR AKA+NFGI+YGIS F
Sbjct: 709 ILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE-LTSEHRRKAKAINFGIIYGISAF 767
Query: 724 GLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSR 783
GL+ L + A +YI YF Y G++ YME A GYV F R+ +P I+ +
Sbjct: 768 GLAKQLNVSNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVINFFGRKCFVPLIHDK 827
Query: 784 NFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNE 843
++QFAER AIN+PIQG+ ADI+KIAMINLD+ ++K K++++LQ+HDE++ EVP +
Sbjct: 828 --KLKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKNNLKTRLVLQIHDELLFEVPED 885
Query: 844 EIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
E+ + ++ K ME++ ++ VP+I + G W E
Sbjct: 886 EVELVTPIIKKIMENSTNMDVPIITEIRVGNNWME 920
>gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae
GPIC]
gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae
GPIC]
Length = 869
Score = 450 bits (1157), Expect = e-125
Identities = 323/904 (35%), Positives = 477/904 (52%), Gaps = 69/904 (7%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
K+ ++D S FRA+FAL + KN+SG T A++GF +N ++ PSH++ FD
Sbjct: 3 KIFILDASGFVFRAYFALPD----MKNSSGEGTQAVFGFIRSINKLIKEFSPSHMVAVFD 58
Query: 66 A-GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
R E+YADYK R + + +Q P +++ +LG+ + E+E EADD+I +
Sbjct: 59 GPNNKQSRREIYADYKSNREQKEENLYQQIPVVKEYCSLLGLSYLEVEGVEADDVIASAT 118
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
+Q A +E + + + + DKDL+QL N V K E +E +++ GI P+
Sbjct: 119 RQ--AVSEGYQVCICTADKDLLQLVGPNVVALNPWKDQPEIDE---NRVIDIYGIPPTGI 173
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
D AL+GD SDNIPGV+ G K LL +Y S+EGI EN++ + S K L K+
Sbjct: 174 SDYLALVGDTSDNIPGVSGCGPKKATALLQKYHSVEGILENLDELTGSTHKM-LSEQKDV 232
Query: 245 AFLSKTLATINIASPITIGLEDI---LYSGPQDIKALSQFYDEMDFKQFKAALGEETSQE 301
LSK+LA +N A P+ ++++ LY Q+ L+ FY FK + EE S
Sbjct: 233 LLLSKSLAVLNDAIPLPKRIDELKFPLYEAHQE--ELNAFYMRQGFKTLVQQV-EEASSV 289
Query: 302 DFEV--DFTEVEQLKTEMFSDNDFYYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQ 359
D E+ + ++ + + + + + G L+G+A + D +Y L
Sbjct: 290 DVEIINNNKQLAHVLSTLHGKSVAFSVGYKGSFLPSLTLMGVALASDDDVYYVDIEHALD 349
Query: 360 EAL-----FKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLS--------- 405
+ L F + Y+ KR L I + A D LA++L++
Sbjct: 350 DVLTPLQYFFRREDTTFYGYNIKRDNHALKNAGIHVHNIALDLALAEHLINGGAKISYQT 409
Query: 406 -TTEDNLVSTIARL-----YTNLPL---DTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVL 456
+ LVS+ R +LP+ + A Y G F+ HL K K L
Sbjct: 410 LLMDHGLVSSAGRYGKEWGQLSLPIAKSPANPAQYFGG----------FVSHLPKIKKSL 459
Query: 457 VDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETL 516
+++LK E+L F ME PL VL +E G+ + L E+ + + L
Sbjct: 460 -------LEELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLDVEDLQELERILSEELAML 512
Query: 517 TQEIYELAGQEFNINSPKQLGKLLFETLGL-PVEMTKKTKTGYSTAVDVLERLAPISPLV 575
T +IY LAG FNI SPKQL ++L+ LGL P++ + TK +VLE L+ ++
Sbjct: 513 TDDIYTLAGAPFNIKSPKQLSEVLYNKLGLKPIDKARSTKA------EVLEALSGEHEII 566
Query: 576 TKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE 634
KIL +R + KL STY+ L + +IH + Q T TGRL+ DPNLQNIP+R E
Sbjct: 567 EKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPTFNQMGTVTGRLACQDPNLQNIPIRSE 626
Query: 635 QGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFG 694
+GRL+RKAF + N LS+DYSQIELR LAH+S+DE L AF+ DIHT TA +VF
Sbjct: 627 RGRLLRKAFCNTHQNNYFLSADYSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFH 686
Query: 695 IEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYM 754
+ E VT R AK VNFGI+YG +GLS L I A++ ID YF+RYP + ++
Sbjct: 687 VPL-EEVTKQQRMQAKTVNFGIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPEVARFI 745
Query: 755 ETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMIN 814
V +A + V+TL R R + + + N R + R A+N+ IQGSAA+++K+AM+
Sbjct: 746 NETVSQACENLRVKTLLGRERIIDNWTEFS-NSRAASGRLAVNTRIQGSAAELIKLAMLQ 804
Query: 815 LDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGE 874
L L+K KS+MLLQ+HDE++ EVP EE ++ LV MESA+ LSVPL+ + G+
Sbjct: 805 LSDALEKRKLKSRMLLQIHDELIFEVPEEEKEEMQTLVRDIMESAMILSVPLVVNILIGK 864
Query: 875 TWYE 878
W E
Sbjct: 865 NWAE 868
>gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium
longum NCC2705]
gi|23326218|gb|AAN24793.1|AE014721_7 DNA polymerase I
[Bifidobacterium longum NCC2705]
Length = 955
Score = 446 bits (1148), Expect = e-124
Identities = 321/956 (33%), Positives = 477/956 (49%), Gaps = 105/956 (10%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
LL++DG S+AFRAFFAL +D F +SG TNA++GF ML ++ +P H+ VAFD
Sbjct: 14 LLVVDGHSLAFRAFFAL--PVDNFSTSSGQATNAVWGFATMLAQVIDAEKPDHLGVAFDV 71
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR EM YKG R P+E Q P I++ L LG+ + E +E DD+I TLA
Sbjct: 72 KGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLATM 131
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
+ + H V+SGD+D QL D N V + + TP +++K +TP+Q+ D
Sbjct: 132 GDKAGYH--TLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQYPD 189
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAF 246
L AL G+ +DNIPGV +G+ K ++++GSL+GI E+ + + K E+L + +Q
Sbjct: 190 LAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIG-GKKGESLRANIDQVK 248
Query: 247 LSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF---------KQFK------ 291
L++ + + + + +ED+ + G D+ + + E++F K F
Sbjct: 249 LNRKVNALVRDVDLGVDIEDLTF-GTVDVAQIDALFKELEFGPRTKSRVLKTFNTGAKAS 307
Query: 292 --AALGEETSQEDFEVD------------FTEVEQL-------KTEMFSDNDFYYFEM-- 328
+ GE T+ E E D T EQ + E+ + F +
Sbjct: 308 NTSGAGESTNNEQNEQDSSLDLNLPEPTSITAPEQFDEWVKAHRVEVKVPGEIADFTVSD 367
Query: 329 LGDNYHVEDLIG---------IAWGNSDTIYATSNVSLLQEALFKKALSKPIK------- 372
GD + G AWG+ AT+ + A +S PI
Sbjct: 368 YGDGSQRHAICGDAVGHAWTVAAWGDERPGRATAQAIAVATATSAAIVSLPITDTLRAQL 427
Query: 373 ------------TYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT--EDNLVSTIARL 418
+ +K LL ++DL P FDT+LA YL D+L
Sbjct: 428 AQFLKSEHSRTIVHGYKELLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHF 487
Query: 419 Y------TNLP----LDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLK 468
T P LD DD + + LA + ++D
Sbjct: 488 LDIHFTETEQPSQGTLDFDDDQVEEDPNELRLRDLAIIRSLAVTLGPIIDER-------- 539
Query: 469 ANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF 528
EQ L+ +E P++ VL ME G KV L M + + +E AG E
Sbjct: 540 --EQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEI 597
Query: 529 NINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPIS-------PLVTKILE 580
N+ SPKQL K+LFE +GL + TK+TK+G Y+T L+ L S + +L
Sbjct: 598 NLQSPKQLQKVLFEDMGL--KPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLR 655
Query: 581 YRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIR 640
+R+I KL+ + D +IHT + Q + TGRLSS DPNLQNIP R GR IR
Sbjct: 656 HREINKLKQIVQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGREIR 715
Query: 641 KAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPEN 700
FVP E L+S DYSQ+ELR++A +S DE LI AF+ GAD H A V+ + +
Sbjct: 716 GVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKL-PVDQ 774
Query: 701 VTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVRE 760
+T + R + KA+++G+ YG+S +GL+ L I + A+ + YF+ + + +Y+E++V
Sbjct: 775 ITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLVAN 834
Query: 761 AKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD 820
A++KGY ET+F RRR P ++S N R+ AER A+N+PIQGSAADI+KIAMI ++ L
Sbjct: 835 AREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQTLA 894
Query: 821 KGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETW 876
+ KS+++LQ+HDE+V+E+ E + ELV ME A+ L+VPL G W
Sbjct: 895 EAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLAVPLDVSCGIGSDW 950
>gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus
elongatus BP-1]
gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus
elongatus BP-1]
Length = 945
Score = 440 bits (1131), Expect = e-122
Identities = 331/961 (34%), Positives = 501/961 (51%), Gaps = 110/961 (11%)
Query: 7 LLLIDGSSVAFRAFFALYNQID-RFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
LLLIDG S+AFRA++A D + ++G+ T+ +GF L IL + Q H+ +AFD
Sbjct: 6 LLLIDGHSLAFRAYYAFSKGRDGGLRTSTGIPTSVCFGFLKSLLEILEQQQSDHVAIAFD 65
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
G+ TFR +YK GRA+TP +F ++ L L + YEADD+IGT+A
Sbjct: 66 LGEPTFRHAADENYKAGRAETPQDFITDIANLQALLRALRLPLLSQPGYEADDVIGTVAH 125
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEI---------SKKGVAEFEEFTPAYLMEK 176
+ + + +++VSGD+DL QL D V++ K+G+ E F + E
Sbjct: 126 CWRS--QGWPVSIVSGDRDLFQLIDREGQVQVLYLGSTLGQRKQGL---EAFDALKVKET 180
Query: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE 236
MG+ P Q +D KAL GD SD IPG+ IG KT ++LLS+Y +LE IY +I ++ ++
Sbjct: 181 MGVWPEQIVDYKALCGDASDRIPGIKGIGPKTAVQLLSQYPTLEDIYAHIHEIRPPSLRT 240
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296
LIN + A S+TLA I + + L+ P D L D+++F+ + L +
Sbjct: 241 KLINGEADARHSRTLAQI-VHDVPLELPLEELHLSPFDWPTLDHLLDQLEFRALRLQLQD 299
Query: 297 ------------ETSQED------------FEVDFTEV-EQL-----KTEMFSDNDF--- 323
ET E+ V E EQL + E +D +
Sbjct: 300 WHLRLGGILPDLETDSEETWFFAPTDTPPPLNVQLIETPEQLQWLMSQLETCTDANHPVA 359
Query: 324 YYFEMLGDNYHVEDLIGIA--WGNSDTIYA--------TSNVSLLQEALFKKALSKPIKT 373
+ E N L+G+ WG + A N+ L+E L A +PI
Sbjct: 360 WDTETTALNPRDAALVGLGCCWGAAPDQVAYLPLGHKEGQNLP-LEETL---AALRPILE 415
Query: 374 YDFKRSKVLLN--------RFN-IDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPL 424
D + KVL N RF I L FDT LA Y+++ + + + + Y L
Sbjct: 416 GD-RYPKVLQNAKFDRLVLRFQGIQLRGVVFDTMLASYVINPEASHNLKDLCQRYLPLQA 474
Query: 425 DTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLV----DSEANIMQQLKANEQEELLFEME 480
+ + GK A ++ V EA++ +L+ +LL E+E
Sbjct: 475 QSYRTLVGKDQTLADLSPATVAQYCGLDVHTTYLLKEKLEADLTPRLR-----QLLLEVE 529
Query: 481 QPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLL 540
PL +LA+ME GI++ + L +++ E ++ + L Q+ ++ GQ FN+ SPKQL +LL
Sbjct: 530 LPLEPILAEMEATGIRIDSDYLRQLSQELEQQLAALQQQAWDAVGQPFNLASPKQLSELL 589
Query: 541 FETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL 600
F TLGL + T KTK GYST LE+L P++ IL +R + KL+STY+ L +
Sbjct: 590 FGTLGLDTKKTHKTKLGYSTDAATLEKLRGDHPVIDLILSHRTLAKLKSTYVDVLPTLVR 649
Query: 601 ED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQ 659
D G++HT + Q +T TGRLSSS PNLQNIP+R E R IR+AF+P E +L+++DYSQ
Sbjct: 650 PDTGRVHTEFNQAVTATGRLSSSSPNLQNIPIRTEFSRQIRRAFIP-EAGWLLVAADYSQ 708
Query: 660 IELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG 719
IELR+LAH+S++ L+AA++EGAD+H TA F +EK + ++ ++RR K +NFG++YG
Sbjct: 709 IELRILAHLSQEPALLAAYQEGADVHRLTAQ--FLLEKTD-ISSSERRLGKMINFGVIYG 765
Query: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR---- 775
+ + G+ AK +I ++ RYP + +Y+ + R A +GYVET+ RRR
Sbjct: 766 MGPQRFAREAGVSVAEAKVFIQRFYNRYPRVFDYLRQMERLALSQGYVETILGRRRYFAF 825
Query: 776 --------------SLPDINSRNFNIRQFAE---RTAINSPIQGSAADILKIAMINLDRV 818
L D++ + + R A N+PIQGS+ADI+K AM+ L +
Sbjct: 826 ESRELQSLRGKPLDVLADVDPSKLKMSNYERGLLRAAANAPIQGSSADIIKCAMVKLAPL 885
Query: 819 LDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
L K+++LLQVHDE+VLE+ E ++ + + M +A+ LSVPL D A W E
Sbjct: 886 LPP--EKARLLLQVHDELVLEMTPEAWEHLQTTIPEVMSTAVPLSVPLAVDIYAAANWLE 943
Query: 879 A 879
A
Sbjct: 944 A 944
>gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum]
gi|11261569|pir||D81665 DNA polymerase I TC0780 [imported] -
Chlamydia muridarum (strain Nigg)
gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum]
Length = 866
Score = 438 bits (1126), Expect = e-121
Identities = 315/890 (35%), Positives = 476/890 (53%), Gaps = 44/890 (4%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KL ++D S FRA+FAL + +G T A++GF L+ ++ + P +++ FD
Sbjct: 3 KLFILDASGFIFRAYFAL----PEMRGPNGGSTQAVFGFIRSLDKLVNDLSPEYMVAVFD 58
Query: 66 A-GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
R E+YADYK R + ++ EQ ++Q +++GI E E EADD+I ++A
Sbjct: 59 GPNNKQSRQELYADYKSNRDRKFEDLPEQIALVKQYCELIGIPCLEKEGVEADDVIASVA 118
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
K+A A E F++ + + DKDL+QL ++ ++S + +E ++ + G+ P Q
Sbjct: 119 KKAVA--EGFEVCICTADKDLLQLVNS----QVSVFNPWKEQEIKYNEVLLQFGVAPDQI 172
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
D AL+GD SDNIPGV G K L E+ S+E + N + + SK K+ + E
Sbjct: 173 ADYLALVGDSSDNIPGVVGCGPKKAQAFLKEFQSVEDLVANTQRL-SSKNKQMIEEQIET 231
Query: 245 AFLSKTLATINIASPITIGLEDILYSG-PQDIKALSQFYDEMDFKQF-KAALGEETSQED 302
LSK LAT++ I + E++ +S D+ L+ FY + FK K A ETS
Sbjct: 232 LLLSKRLATLHTDLMIPLKTEEMSFSSQTADVAQLNAFYLQHGFKALVKHAPTSETSISL 291
Query: 303 FEVDFTEVEQLKTEMFSDNDF-YYFEMLGDNYHVEDLIGIAWGNSDTIY-----ATSNVS 356
V V Q+ + + Y G++ L G+A D ++ ++
Sbjct: 292 QVVKDPSVLQMVLKNLKGREVGYCVAYTGEHLPSLRLHGVALSGGDEVFYIEISGDQEIA 351
Query: 357 LLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIA 416
LL+ A F A +K Y KR L ID+ A D LA++L++ T+
Sbjct: 352 LLK-AFFADATTK-FFGYRTKRDNHALKNHGIDVHVTA-DLVLAQHLVNGGAKISFQTLL 408
Query: 417 RLYTNLPLDTDDAVYGK--GAK----RAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKAN 470
++ + A + K GA + +P+ ++ V L + + ++L+
Sbjct: 409 VESGHI---QEAAFFAKEWGASSLPVQNLPQNPA--QYFGIFVSRLPSIKNYLFEKLEEK 463
Query: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNI 530
+ + +EQPL +L ME G+ + L + + K +ET TQEIY+LAG EFNI
Sbjct: 464 GLKSIFKNVEQPLEEILFAMECAGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEFNI 523
Query: 531 NSPKQLGKLLFETLGL-PVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQS 589
SPKQL +L+ LG+ PV+ K TK +VLE L +++KIL +R K+ S
Sbjct: 524 KSPKQLSDVLYHRLGIKPVDKAKSTKA------EVLEALEGSHEIISKILAFRATEKMLS 577
Query: 590 TYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSED 648
TY+ L I L ++H + Q T TGRLS DPNLQNIPVR E+G+ +R+AF +++
Sbjct: 578 TYVRALPRQIDLGTHRVHPTFNQVGTVTGRLSCQDPNLQNIPVRYERGKSLREAFRFTKE 637
Query: 649 NAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRN 708
N L++DYSQ+ELR LAH+S+DE L AF G DIHT TA +VF + + VT R
Sbjct: 638 NDYFLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPL-DQVTERQRYQ 696
Query: 709 AKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVE 768
AKAVNFG+ YG +GLS NL I A+ ID YF RYP ++ + +A + V
Sbjct: 697 AKAVNFGLAYGQQAYGLSKNLKISVNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVT 756
Query: 769 TLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKM 828
T+ R R L D S R + R A+N+ IQGSAA+++K+AM+N+ R L G KS++
Sbjct: 757 TMLGRERILSDWESSP-GARAASGRLAVNTRIQGSAAELIKLAMLNISRELVSRGLKSRL 815
Query: 829 LLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
LLQ+HDE++ EVP EE+ ++ LV + MESA+SLSVPL+ + G+ W E
Sbjct: 816 LLQIHDELLFEVPKEELEEMKVLVQEKMESAMSLSVPLVVNVLIGKNWAE 865
>gi|14916560|sp|Q9RLB6|DPO1_RICHE DNA polymerase I (POL I)
gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica]
Length = 921
Score = 436 bits (1121), Expect = e-121
Identities = 314/936 (33%), Positives = 488/936 (51%), Gaps = 75/936 (8%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA++A + G A+YGF ML +L +P H+
Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQ----QPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHV 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD+G FR +Y +YK R P++ Q P +R L E YEADDII
Sbjct: 57 AVVFDSGGKNFRHYIYPEYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A + A E ++ ++S DKDL+QL N + +G + T +++K G T
Sbjct: 117 ATFATKTAALGE--NVVIISSDKDLLQLMSENIKIYDPLRG----KYITEDDVVKKFGTT 170
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
+ ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ +++ + K +E L N
Sbjct: 171 SDKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQN 230
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQ--------FKA 292
+E A +S L ++ + L ++ +S P K L+ F E F+ F
Sbjct: 231 SREAALISWQLIGLDSNVDLDFQLNNLEWSPPNSDK-LTGFLQEYGFRSLYKRAENLFDI 289
Query: 293 ALGEETSQEDFEVDFTEVEQLKTEMFSDN-----------DFYYFEMLGDNYHV------ 335
+ + D +V TE++++ ++ +N Y + GDN
Sbjct: 290 KINDHKDIVDNKV--TEIKEISNKLELENFAKDAEKIGIFGIYLLQHKGDNLAFILSLQN 347
Query: 336 -----------EDLIGIAWGNSDTIYATSNVSLLQEALFKKALS--KPIKTYDFKRSKVL 382
DL N++ ++ +LL + KK KP+ + +S +
Sbjct: 348 QSYIIKISNTSHDLFSYNAKNNNDWFSDIIFNLLADKSIKKITYSLKPLLKFYANQSHEI 407
Query: 383 LNRFNIDLPEPAFDTRLAKYLL---STTEDNLVSTIARLYTNLPLDTD--DAVY------ 431
+++L + A L++ L + EDN + DT+ A Y
Sbjct: 408 TAIEDLELMQYALSAGLSQKNLFEEALKEDNRPLSKLAYREEFKGDTERSTAAYKSVRED 467
Query: 432 -GKGAKRAIPEKTRF------LEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLA 484
G+ +P + F + A+ V + + +LK N+ L +++ P+
Sbjct: 468 ASTGSTSKLPLEVEFGKRPIVINESARIVANFISLYKQNILELKDNKAFRLYSDIDLPIC 527
Query: 485 NVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETL 544
+L KME GIKV N L +++ E I L +EI+ L+G +FNI S KQLG++LFE +
Sbjct: 528 FILDKMEKVGIKVDANYLKQLSTEFGAEILKLEEEIFALSGTKFNIGSLKQLGEILFEKM 587
Query: 545 GLPVEMTKKTKTGYSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYILE-D 602
LP + YST ++LE+L+ + +L +RQ+TKL++TY L I
Sbjct: 588 QLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTDSLPKQIDNIT 647
Query: 603 GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIEL 662
++HT ++Q T TGRLSS +PNLQN+P+R +G IR+AF+ +E+ L+S+DYSQIEL
Sbjct: 648 HRVHTTFLQTSTTTGRLSSQEPNLQNVPIRSSEGNKIRQAFI-AEEGYKLISADYSQIEL 706
Query: 663 RVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISD 722
R+L+HI+ + L AF DIHT TA ++F ++K E +T RR AKA+NFGI+YGIS
Sbjct: 707 RILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE-LTNEHRRKAKAINFGIIYGISA 765
Query: 723 FGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINS 782
FGL+ L + A +YI YF Y G++ YME A GYV F R+ +P I+
Sbjct: 766 FGLAKQLNVTNGEASEYIKKYFAEYKGVQEYMEQTKAFASSNGYVTNFFGRKCFVPLIHD 825
Query: 783 RNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPN 842
+ ++QFAER AIN+PIQG+ ADI+KIAMINLD+ ++K K++++LQ+HDE++ E P
Sbjct: 826 K--KLKQFAERAAINAPIQGTNADIIKIAMINLDQEIEKRKLKTRLVLQIHDELLFEAPI 883
Query: 843 EEIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
+E+ I ++ K ME + ++ VP+I + G W E
Sbjct: 884 DEVEIIIPIIKKIMEYSTNMDVPIITEIRTGNNWME 919
>gi|15605221|ref|NP_220007.1| DNA Polymerase I [Chlamydia
trachomatis]
gi|7434821|pir||C71509 probable DNA polymerase I - Chlamydia
trachomatis (serotype D, strain UW3/Cx)
gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis]
Length = 866
Score = 426 bits (1094), Expect = e-117
Identities = 313/894 (35%), Positives = 475/894 (53%), Gaps = 52/894 (5%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KL ++D S FRA+FAL + +G T A++GF L+ ++ + P +++ FD
Sbjct: 3 KLFVLDVSGFVFRAYFAL----PEMRGPNGESTQAVFGFIRSLDKLIKDLSPEYVVAVFD 58
Query: 66 A-GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
R E+YADYK R + + EQ ++Q ++LGI E + EADD+I ++
Sbjct: 59 GPNNKQSRQELYADYKSNRDRQLGDLPEQIRLVKQYCELLGISCLEEKGVEADDVIASIT 118
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
K+A A + F++ + + DKDL+QL + +V K+ ++ E ++ + G+ P Q
Sbjct: 119 KKAVA--DGFEVCICTADKDLLQLVSSRVSVFNPWKEQEIQYNE-----VLSQFGVPPEQ 171
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
D AL+GD SDNIPGV+ G K LL E+ S+E + N E + K K+ + + KE
Sbjct: 172 IADYLALVGDSSDNIPGVSGCGPKKAQALLKEFQSVEELVANTERL-SGKTKQMIEDQKE 230
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKA--LSQFYDEMDFKQFKAALGEETSQE 301
LSK LAT+++ + E+ +S PQ I + L+ FY + FK TS
Sbjct: 231 TLLLSKRLATLHMDLAFPLTTEEFAFS-PQAIDSAQLNTFYLQHGFKALVKHAETATSSI 289
Query: 302 DFEVDFTEVEQLKT--EMFSDNDF-YYFEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLL 358
+ T+ LKT E + Y G++ L G+A ++ ++ +
Sbjct: 290 AVQT-VTDPVTLKTVLEQLKGGEVGYCAAYTGEHLPSLQLHGVALAGANQVFYIEVSGVQ 348
Query: 359 QEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARL 418
+ AL K + + RSK R N L D + L+ ++LVS A++
Sbjct: 349 EIALLKDFFADKATQFFGYRSK----RDNHALRNSGIDVHVTADLV--LAEHLVSGGAKI 402
Query: 419 -YTNLPLDT---DDAVY-----GKGA--KRAIP-EKTRFLEHLAKKVKVLVDSEANIMQQ 466
+ L +++ +AV+ G G+ +++P + ++ LA K L+ + + +
Sbjct: 403 SFQTLLMESGHIQEAVFFSKEWGAGSLPVQSLPRDPLQYFGMLASK---LLAIKNYLFVK 459
Query: 467 LKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ 526
L+ +++ +EQPL VL ME G+ + L + + K +E +QEIY+L G
Sbjct: 460 LEEKGLKDIFETVEQPLEAVLFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGC 519
Query: 527 EFNINSPKQLGKLLFETLGL-PVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQIT 585
EFNI SPKQL +L++ LG+ PV+ K TK +VLE L ++ KIL +R
Sbjct: 520 EFNIKSPKQLSDILYQRLGIEPVDKAKSTKA------EVLEALEDRHEIIPKILMFRATE 573
Query: 586 KLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFV 644
K+ STY+ L I +IH + Q T TGRLS DPNLQNIPVR E+GR +R+AF
Sbjct: 574 KMLSTYVRALPKQINAGTQRIHPTFNQVGTVTGRLSCQDPNLQNIPVRSERGRSLREAFR 633
Query: 645 PSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPN 704
+DN L++DYSQIELR LAH+S+DE L AF G DIH TA +VF + E VT
Sbjct: 634 VKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPL-EQVTKQ 692
Query: 705 DRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDK 764
R AKAVNFG+VYG +GLS L I A+ +D YF RYP ++ + +A
Sbjct: 693 QRYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKN 752
Query: 765 GYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGY 824
V T+ R R L D S R + R A+N+ IQGSAA+++K+AM+N+ + G
Sbjct: 753 QKVTTMLGRERILSDWESSP-GARAASGRLAVNTRIQGSAAELIKLAMLNISDEMRSRGL 811
Query: 825 KSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
KS++LLQ+HDE++ EVP EE+ +R LV + MESA+ LSVPL+ + G+ W E
Sbjct: 812 KSRLLLQIHDELLFEVPAEELEEMRSLVQEKMESAMELSVPLVVNVLIGKNWAE 865
>gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis]
Length = 932
Score = 424 bits (1090), Expect = e-117
Identities = 241/508 (47%), Positives = 322/508 (62%), Gaps = 14/508 (2%)
Query: 374 YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGK 433
YD K +L + ++++ D + YLL +N ++ARL L D + +
Sbjct: 432 YDVKSLWLLARQEDVEIQGIDGDGLIGAYLLDPLANNY--SLARLAHEL---IDWKISPE 486
Query: 434 GAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIR 493
K+ +P E A V L + +L +L ++E PLA +L ME
Sbjct: 487 AGKQVLPA-----EDAALAVAGLFHLTPAMEAKLGEESLGKLYRDVELPLAPILGSMEWI 541
Query: 494 GIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKK 553
GIKV L +MA E I+ L EI+ELAG+ FNINS +Q GK+LFE LGLPV K+
Sbjct: 542 GIKVNPKVLQDMAGELNSDIQKLQAEIHELAGETFNINSTQQFGKILFEKLGLPV--IKR 599
Query: 554 TKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQD 612
TKTGYST V+VLE L+ P+V K+LE+RQ+ KL+STY+ GL I +G+IHT + Q
Sbjct: 600 TKTGYSTDVEVLEELSDRHPIVPKVLEFRQLMKLKSTYVEGLLPLIDGPEGRIHTSFNQS 659
Query: 613 LTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDE 672
+T TGRLSS++PNLQNIPVRLEQGR IRKAF+ E LL++DYSQIELR+LAH+S D
Sbjct: 660 VTATGRLSSTEPNLQNIPVRLEQGRHIRKAFIAPEPGWTLLAADYSQIELRILAHLSDDP 719
Query: 673 HLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIP 732
AF + DIHT TA VF + NVT RR AKAVNFGIVYGISDFGLS +LG+
Sbjct: 720 SFKDAFAKNQDIHTRTASEVFDVPM-GNVTREMRRRAKAVNFGIVYGISDFGLSRDLGVT 778
Query: 733 RKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAE 792
R AK+YI+ YF RY G++ Y++ ++ EA+ +G+V TL RRR LPD+ +N + F E
Sbjct: 779 RGEAKEYIEGYFRRYHGVRGYIDRIIAEARQQGFVTTLLGRRRRLPDLFVKNKIRQNFGE 838
Query: 793 RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELV 852
RTA+N+PIQG+AADI+K AM+ + + L G K++MLLQVHDE++ EVP EE+ + L+
Sbjct: 839 RTAMNTPIQGTAADIIKAAMVKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTVVAPLI 898
Query: 853 TKTMESAISLSVPLIADENAGETWYEAK 880
+ ME I +SVPL D G WY+ K
Sbjct: 899 KRIMEKTIEISVPLTVDVKKGANWYDMK 926
Score = 214 bits (546), Expect = 4e-54
Identities = 123/297 (41%), Positives = 177/297 (59%), Gaps = 12/297 (4%)
Query: 8 LLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDAG 67
++IDGSS+ RAF+AL ++ G+ TNA+YGF M + QP ++ V D
Sbjct: 15 MVIDGSSLLHRAFYAL----PPMSSSQGVPTNAVYGFLTMFERLRREYQPEYLAVCLDKS 70
Query: 68 KTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQA 127
+TTFRT+ + YK R TPD+ R QF +++ + I YE E +EADDIIGTL+ A
Sbjct: 71 RTTFRTQTFEGYKAQRGATPDDLRPQFGLLKEVMAAHDIGVYEQEGFEADDIIGTLSCLA 130
Query: 128 EASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFIDL 187
+ + +V+GD+D QL V +++KG++E E + L EK+G++P Q IDL
Sbjct: 131 KEKGIY--TLIVTGDRDAWQLISPGVEVLLTRKGISEVERYDEEALKEKVGLSPKQIIDL 188
Query: 188 KALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAFL 247
K LMGD SDNIPGV +GEKT LKLL ++G++E +Y+ +E +K K+KE L+ KEQAFL
Sbjct: 189 KGLMGDTSDNIPGVPGVGEKTALKLLEQFGTMETLYDRVEEVK-GKLKEKLVTHKEQAFL 247
Query: 248 SKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL----GEETSQ 300
SK LATI I I E L D L + Y +++F+ L GEE+++
Sbjct: 248 SKKLATIVCDMDIAIDWES-LKRMQADPAVLRKLYTDLEFRSLLKNLPLPEGEESAE 303
>gi|15618522|ref|NP_224808.1| DNA Polymerase I [Chlamydophila
pneumoniae CWL029]
gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila
pneumoniae J138]
gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila
pneumoniae AR39]
gi|7434820|pir||F72058 DNA polymerase I CP0135 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
gi|25288527|pir||A86567 DNA polymerase I [imported] - Chlamydophila
pneumoniae (strain J138)
gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila
pneumoniae CWL029]
gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila
pneumoniae AR39]
gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila
pneumoniae J138]
Length = 870
Score = 423 bits (1088), Expect = e-117
Identities = 299/896 (33%), Positives = 480/896 (53%), Gaps = 52/896 (5%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KL ++D S FRA+FAL KN+ G T A++GF LN ++ P +++ FD
Sbjct: 3 KLFVLDASGFIFRAYFAL----PEMKNHQGQATQAVFGFIRSLNKLIKEFSPEYMISVFD 58
Query: 66 A-GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
R +YADYK R K ++ Q +++ ++G+ + E E EADD+I ++A
Sbjct: 59 GPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIASIA 118
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVV--EISKKGVAEFEEFTPAYLMEKMGITPS 182
K+A E++ + V + DKDL+QL + + V + +GV E ++E+ GI P
Sbjct: 119 KKAR--EENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISE-----VIERYGIPPG 171
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
D AL+GD SDNIPG+ G K LL ++GS+EG+ EN++A+K + + +++++
Sbjct: 172 NIPDYLALVGDSSDNIPGLPGCGPKKAAALLKQFGSVEGLLENLDAVK--GLSQTMLSER 229
Query: 243 EQAF-LSKTLATINIASPITIGLEDILY-SGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
++ LSK LA ++ PI + +E + + P D + L FY + FK + E +
Sbjct: 230 QETLKLSKRLALLDSNIPIPVPIESLTFPQHPVDEEKLIHFYIQQGFKTLVPSKQTEAAT 289
Query: 301 EDFEVDFTEVEQLKT--EMFSDNDFYYFEMLGDNYHVE-DLIGIAWGNSDTIY------- 350
D ++ + E L + D + N+ + L G+A ++
Sbjct: 290 VDVQI-IKDAESLTNILNLVQGGDIAFAVAYTGNHLLSLKLEGLALTQGSGVFFIALEEE 348
Query: 351 ATSNVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDN 410
T + +L++ ++ L+ Y+ KR L I + E ++D LA++L T
Sbjct: 349 GTKILPILKDFFLREDLT--FYGYNLKRDCHALLNAGIVIREISYDLALAEHL--TNGGG 404
Query: 411 LVSTIARLYTNLPLDTDDAVYGKGAKRAIP------EKTRFLEHLAKKVKVLVDSEANIM 464
+S + L + +T + +P + ++ + ++ D+ I+
Sbjct: 405 KISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQYFGEFVAYLPIIKDA---IL 461
Query: 465 QQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA 524
+++ +L ++E PL VL ME G+ + L + + + LT+EIY+L+
Sbjct: 462 EEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEIYDLS 521
Query: 525 GQEFNINSPKQLGKLLFETLGL-PVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ 583
G+ FNI SPKQL +L+ LGL P++ K ST +VLE L P++ K+L +R
Sbjct: 522 GRPFNIKSPKQLSDILYNELGLRPIDKAK------STRAEVLEALRSEHPIIEKLLAFRT 575
Query: 584 ITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKA 642
I KL STY+ L + +IH + Q TGRL+ DPNLQNIP+R E+G L+RKA
Sbjct: 576 IEKLLSTYVKALPKQVDSHTQRIHPSFDQTGAVTGRLACRDPNLQNIPIRSERGILLRKA 635
Query: 643 FVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVT 702
F SE N+ LS+DYSQIELR LAH+S+D+ L AF+ G DIH TA +VF + E V+
Sbjct: 636 FRLSEKNSYFLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPL-EQVS 694
Query: 703 PNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAK 762
R AK VNFGIVYG FGL+ L I A++ I YF RYP I +++E +++A
Sbjct: 695 KEQRMQAKTVNFGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAA 754
Query: 763 DKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKG 822
V T+ R R + N + R + R A+N+ IQGSAA+++K+AM+++ + + +
Sbjct: 755 KDLRVTTMLGRERIIDSWNEFPGS-RAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQ 813
Query: 823 GYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
KS+MLLQ+HDE++ EVP EEI ++ LV + MESA++LSVP++ + G+ W E
Sbjct: 814 QMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMTLSVPIVVNILIGKNWAE 869
>gi|33241967|ref|NP_876908.1| DNA-directed DNA polymerase I
[Chlamydophila pneumoniae TW-183]
gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I
[Chlamydophila pneumoniae TW-183]
Length = 870
Score = 422 bits (1086), Expect = e-116
Identities = 299/896 (33%), Positives = 479/896 (53%), Gaps = 52/896 (5%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KL ++D S FRA+FAL KN+ G T A++GF LN ++ P +++ FD
Sbjct: 3 KLFVLDASGFIFRAYFAL----PEMKNHQGQATQAVFGFIRSLNKLIKEFSPEYMISVFD 58
Query: 66 A-GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
R +YADYK R K ++ Q +++ ++G+ + E E EADD+I ++A
Sbjct: 59 GPNNKQSRQAIYADYKSNRQKKFEDIPPQIALVKEYCSLIGLAYLEKESVEADDVIASIA 118
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVV--EISKKGVAEFEEFTPAYLMEKMGITPS 182
K+A E++ + V + DKDL+QL + + V + +GV E ++E+ GI P
Sbjct: 119 KKAR--EENYKVYVCTADKDLLQLVNDHVVAWNPWADQGVVGISE-----VIERYGIPPG 171
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
D AL+GD SDNIPG+ G K LL ++GS+EG+ EN++A+K + + +++++
Sbjct: 172 NIPDYLALVGDSSDNIPGLPGCGPKKAAALLKQFGSVEGLLENLDAVK--GLSQTMLSER 229
Query: 243 EQAF-LSKTLATINIASPITIGLEDILY-SGPQDIKALSQFYDEMDFKQFKAALGEETSQ 300
++ LSK LA ++ PI + +E + + P D + L FY + FK + E +
Sbjct: 230 QETLKLSKRLALLDSNIPIPVPIESLTFPQHPVDEEKLIHFYIQQGFKTLVPSKQTEAAT 289
Query: 301 EDFEVDFTEVEQLKT--EMFSDNDFYYFEMLGDNYHVE-DLIGIAWGNSDTIY------- 350
D ++ + E L + D + N+ + L G+A ++
Sbjct: 290 VDVQI-IKDAESLTNILNLVQGGDIAFAVAYTGNHLLSLKLEGLALTQGSGVFFIALEEE 348
Query: 351 ATSNVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDN 410
T + +L++ ++ L+ Y+ KR L I + E ++D LA++L T
Sbjct: 349 GTKILPILKDFFLREDLT--FYGYNLKRDCHALLNAGIVIREISYDLALAEHL--TNGGG 404
Query: 411 LVSTIARLYTNLPLDTDDAVYGKGAKRAIP------EKTRFLEHLAKKVKVLVDSEANIM 464
+S + L + +T + +P + ++ + ++ D+ I+
Sbjct: 405 KISFQSLLVNHGFTETAHRFAKEWGNSGLPIGRLPEQPEQYFGEFVAYLPIIKDA---IL 461
Query: 465 QQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELA 524
+++ +L ++E PL VL ME G+ + L + + + LT+EIY+L+
Sbjct: 462 EEINRKNLNHILSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLTEEIYDLS 521
Query: 525 GQEFNINSPKQLGKLLFETLGL-PVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQ 583
G FNI SPKQL +L+ LGL P++ K ST +VLE L P++ K+L +R
Sbjct: 522 GGPFNIKSPKQLSDILYNELGLRPIDKAK------STRAEVLEALRSEHPIIEKLLAFRT 575
Query: 584 ITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKA 642
I KL STY+ L + +IH + Q TGRL+ DPNLQNIP+R E+G L+RKA
Sbjct: 576 IEKLLSTYVKALPKQVDSHTQRIHPSFDQTGAVTGRLACRDPNLQNIPIRSERGILLRKA 635
Query: 643 FVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVT 702
F SE N+ LS+DYSQIELR LAH+S+D+ L AF+ G DIH TA +VF + E V+
Sbjct: 636 FRLSEKNSYFLSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPL-EQVS 694
Query: 703 PNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAK 762
R AK VNFGIVYG FGL+ L I A++ I YF RYP I +++E +++A
Sbjct: 695 KEQRMQAKTVNFGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAA 754
Query: 763 DKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKG 822
V T+ R R + N + R + R A+N+ IQGSAA+++K+AM+++ + + +
Sbjct: 755 KDLRVTTMLGRERIIDSWNEFPGS-RAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQQ 813
Query: 823 GYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
KS+MLLQ+HDE++ EVP EEI ++ LV + MESA++LSVP++ + G+ W E
Sbjct: 814 QMKSRMLLQIHDELLFEVPEEEIEEMQRLVREKMESAMTLSVPIVVNILIGKNWAE 869
>gi|15791706|ref|NP_281529.1| DNA polymerase I [Campylobacter
jejuni]
gi|11261573|pir||F81453 DNA-directed DNA polymerase (EC 2.7.7.7) I
Cj0338c [imported] - Campylobacter jejuni (strain NCTC
11168)
gi|6967812|emb|CAB72805.1| DNA polymerase I [Campylobacter jejuni
subsp. jejuni NCTC 11168]
Length = 879
Score = 402 bits (1032), Expect = e-110
Identities = 295/892 (33%), Positives = 452/892 (50%), Gaps = 50/892 (5%)
Query: 17 FRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDAGKTTFRTEMY 76
F FF LY + FKN+ G + I GF + + + +I+ A D+ TFR+E+
Sbjct: 10 FGFFFRLYYALKGFKNSQGQASGMISGFANFIYSLKNEYKSDYIVFALDSKGKTFRSEID 69
Query: 77 ADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQAEASNEHFDI 136
+YK R P E EQ P + ++ +G E YEADDII + K E N +
Sbjct: 70 PNYKQNRTPPPPELLEQIPICIKMIEKMGFISVSQEGYEADDIIASFVKTCE--NRDIFV 127
Query: 137 TVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFIDLKALMGDKSD 196
+++ DKDL QL S +++E A +EK G+ P+Q D AL GD SD
Sbjct: 128 RIITQDKDLYQLIKDGKTSIYSPISKNDYDE---AACLEKYGVKPNQIRDFLALCGDSSD 184
Query: 197 NIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAFLSKTLATINI 256
NIPGV IG K LL E+GS+EGIYEN+ ++ + + L+ KE AFLSK LA++
Sbjct: 185 NIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVRNERSRNLLLEGKENAFLSKKLASLYD 244
Query: 257 ASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQED----FEVDFTEVEQ 312
+ +E Y + + + + + + L + +D F+ + E
Sbjct: 245 NLEVQNLIEKATYPDEEPLLKILEILEHYELNTLLKKLRQNPDNKDKNLGFKATLVQDEN 304
Query: 313 LKTEMFSDND-----FYYFEMLGDNYHVEDLIGIAW--GNSDTIYA--TSNVSLLQEALF 363
E+ + D + E G + ++G ++ ++ Y T N + E +
Sbjct: 305 KLFEILNTLDKESIIAFDTETTGLDTKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQIS 364
Query: 364 KKALSKPIKT------------YDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT-EDN 410
++ K I+ YDF K++ N F+++LP+ DT + +L + + N
Sbjct: 365 LQSAKKAIEVIFNHFVIGHNLKYDF---KIIQNNFDLNLPQKYADTMILAWLKNPSLRVN 421
Query: 411 LVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKAN 470
+ RL+ L + V KG A E + ++ A+ + + ++ L+
Sbjct: 422 MDDLALRLFNYETLHFESLV-KKGENFASVELEKACKYAAEDAYITLRFYLYFLKNLE-T 479
Query: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNI 530
EL E ++ ME GIK+ N L + + + I+ L++EIY L FN+
Sbjct: 480 PLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRFNL 539
Query: 531 NSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQST 590
NSPKQ+G +LFE L LP KK KTGYST VL L P++ KIL+YR++ KL ST
Sbjct: 540 NSPKQMGDILFEKLKLP--SGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELAKLYST 597
Query: 591 YIIGLQDYILED--GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSED 648
Y L L+D +I++ ++Q T TGRLSS DPNLQNIP + + + FV ++D
Sbjct: 598 YCEPLLKLALKDKNSRIYSSFLQTGTATGRLSSKDPNLQNIPAHGQYAKDYKSCFV-AKD 656
Query: 649 NAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRN 708
+S DYSQIELR+LAH S+DE L+ AF DIH TA+ +FG E R
Sbjct: 657 GFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFGESNYET-----RSV 711
Query: 709 AKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVE 768
AK++NFG++YG+ LS NL I LAK YI+ YFE + IK Y E V EAK G++
Sbjct: 712 AKSINFGLIYGMGYKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVKNEAKQNGFIV 771
Query: 769 TLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKM 828
TL R+R N++ I + ER +INS +QGSAAD++K+AM+ +++ L++ K+
Sbjct: 772 TLSGRKRYFDFENAKPMQIAMY-ERESINSILQGSAADVIKLAMLEINKELNE---DKKL 827
Query: 829 LLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
+LQ+HDE++ EV ++ + ME+ + L V L + + W + K
Sbjct: 828 ILQIHDELIFEVKDDLCENFVKKTRDIMENIVKLKVKLKTSSSIAKNWGDLK 879
>gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia
pseudomallei]
Length = 615
Score = 389 bits (998), Expect = e-106
Identities = 229/523 (43%), Positives = 330/523 (62%), Gaps = 17/523 (3%)
Query: 364 KKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLP 423
KK L + +K YD ++VL N + I L DT L Y+L + + + ++A + +
Sbjct: 102 KKKLGQHLK-YD---AQVLAN-YGIALNGIEHDTLLESYVLESHRTHDMDSLALRHLGVK 156
Query: 424 LDTDDAVYGKGAKR----AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-E 478
+ V G+GA++ +P F E+ A+ + + + Q+ ++ +
Sbjct: 157 TIKYEDVAGQGAQQIGFDEVPLAQAF-EYAAEDADITLQLHHALYPQIAREPGLTRVYRD 215
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E P++ VL KME G+ + + L+ + E + L QE Y LAG EFN+ SPKQ+G+
Sbjct: 216 IELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYALAGGEFNLGSPKQIGQ 275
Query: 539 LLFETLGLPVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQD 597
+ FE L LPV KKT +G ST +VL++LA PL +LE+R ++KL+STY L
Sbjct: 276 IFFERLQLPV--VKKTPSGAPSTDEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPR 333
Query: 598 YILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSD 656
+ D G++HT Y Q + TGRL+S+DPNLQNIPVR +GR IR+AFV + + ++S+D
Sbjct: 334 MVNPDTGRVHTNYAQAVAVTGRLASNDPNLQNIPVRTAEGRRIREAFV-APPGSKIVSAD 392
Query: 657 YSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGI 716
YSQIELR++ HIS+DE L+ AF G DIH +TA VFG+ P VT + RR AK +NFG+
Sbjct: 393 YSQIELRIMLHISEDESLLRAFAHGEDIHRATAAEVFGV-TPLEVTSDQRRIAKVINFGL 451
Query: 717 VYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRS 776
+YG+S FGL+ NLGI R AK YID YF RYPG+ YME AK+KGYVET+F RR
Sbjct: 452 IYGMSSFGLASNLGITRDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLW 511
Query: 777 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEI 836
LP+IN N RQ AER AIN+P+QG+AAD++K++MI +D L++GG +++M++QVHDE+
Sbjct: 512 LPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDEL 571
Query: 837 VLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
VLEVP +E+ +RE + + M L VPL+A+ GE W EA
Sbjct: 572 VLEVPEDELSIVREKLPEMMCGVAKLKVPLVAEVGVGENWEEA 614
>gi|22976274|ref|ZP_00022165.1| hypothetical protein [Ralstonia
metallidurans]
Length = 675
Score = 380 bits (975), Expect = e-104
Identities = 214/492 (43%), Positives = 321/492 (64%), Gaps = 10/492 (2%)
Query: 394 AFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKT---RFLEHLA 450
A DT L Y+L++ ++ + ++A +L T + V GKGA + ++ R E+ A
Sbjct: 187 AHDTMLESYVLASYRNHGMDSLAERLLSLKTITYEEVCGKGANQIGFDQIDLPRATEYAA 246
Query: 451 KKVKVLVDSEANIMQQLKANEQEELLFE-MEQPLANVLAKMEIRGIKVKKNTLNEMAIEN 509
+ V + + QL+A+E + ++E +E P++ VL K+E G+ + + L + E
Sbjct: 247 EDADVTLRLHRKMQPQLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAEL 306
Query: 510 QKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGY-STAVDVLERL 568
+ L + ++ AGQ FN+ SPKQ+G++LF + LPV KKT +G ST +VL++L
Sbjct: 307 GLRMMDLERAAHDAAGQPFNLGSPKQIGEILFNQMKLPV--VKKTASGAPSTDEEVLQKL 364
Query: 569 APISPLVTKILEYRQITKLQSTYIIGLQDYILED-GKIHTRYVQDLTQTGRLSSSDPNLQ 627
A PL +L+YR ++KL+STY L + + G++HT Y Q TGRL+S+DPNLQ
Sbjct: 365 ADDYPLPKLLLDYRGLSKLKSTYTDKLPKMVNPNTGRVHTSYGQATAVTGRLASTDPNLQ 424
Query: 628 NIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTS 687
NIPVR E+GR IR+AF+ + N V++S+DYSQIELR++AHIS DE+L+ AF G DIH +
Sbjct: 425 NIPVRTEEGRRIREAFIAAPGN-VIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRA 483
Query: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERY 747
TA +FG+E+ E V+ RR AK +NFG++YG+S FGL+ NLGI R+ AK YID YF RY
Sbjct: 484 TAGEIFGVER-EAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHYIDRYFMRY 542
Query: 748 PGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADI 807
PG+ +YME + A+++GYVET+F RR LPDIN N RQ AER AIN+P+QG+AAD+
Sbjct: 543 PGVAHYMEQTRQTAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADL 602
Query: 808 LKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLI 867
+K++MI + L+ ++ ++QVHDE+VLEVP E+ +R + + M + +L+VPL+
Sbjct: 603 IKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELELVRVKLPELMCAVATLNVPLV 662
Query: 868 ADENAGETWYEA 879
A+ +G W EA
Sbjct: 663 AEVGSGANWEEA 674
>gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330]
gi|23346901|gb|AAN29079.1|AE014326_10 DNA polymerase I [Brucella
suis 1330]
Length = 979
Score = 378 bits (971), Expect = e-103
Identities = 208/409 (50%), Positives = 272/409 (65%), Gaps = 13/409 (3%)
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E+PL +VLA+ME RGI V + L+ ++ + + EIY LAG++F I SPKQLG
Sbjct: 575 LERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGD 634
Query: 539 LLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQ 596
+LF +GLP KTKTG +ST+ VLE LA PL KI+++RQ+TKL+STY L
Sbjct: 635 ILFGKMGLP--GASKTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALP 692
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
+I + ++HT Y T TGRLSSSDPNLQNIPVR +GR IR AF+ N L+S+
Sbjct: 693 GFINPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNK-LISA 751
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPND-RRNAKAVNF 714
DYSQIELRVLAH++ L AF +G DIH TA +FG+ P P++ RR AKA+NF
Sbjct: 752 DYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGV--PVEGMPSEVRRRAKAINF 809
Query: 715 GIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR 774
GI+YGIS FGL++ L IPR+ A QYI TYFER+PGIK+YME A++ GYVET+F RR
Sbjct: 810 GIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRR 869
Query: 775 RSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHD 834
PDI + N +R F ER AIN+PIQG+AADI++ AMI ++ L K ++MLLQVHD
Sbjct: 870 AHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHD 929
Query: 835 EIVLEVPNEEIGAIRELVTKTMES----AISLSVPLIADENAGETWYEA 879
E++ EVP E+ +V + ME+ A+SL+VPL D A W EA
Sbjct: 930 ELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNWDEA 978
Score = 169 bits (429), Expect = 2e-40
Identities = 106/318 (33%), Positives = 163/318 (50%), Gaps = 17/318 (5%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGR------ 54
M + L L+DGS FRA+ AL + GL A+ GF ML +L
Sbjct: 1 MKKGDHLFLVDGSGYIFRAYHALPPLT---RKTDGLPVGAVSGFCNMLWKLLKDARNTDV 57
Query: 55 -VQPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEH 113
V P+H V FD TFR E+Y DYK R P++ QF IRQ + E E
Sbjct: 58 GVVPTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEG 117
Query: 114 YEADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYL 173
+EADD+I T A+ AE + D+T++S DKDL+QL + + S K ++ + +
Sbjct: 118 FEADDLIATYARLAEKAGG--DVTIISSDKDLMQLVTPSVSMYDSMKD----KQISIPEV 171
Query: 174 MEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSK 233
+EK G+ P + ID+++L GD +DN+PG+ IG KT +LL E+G L+ + +KQ+K
Sbjct: 172 IEKWGVPPEKMIDVQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNK 231
Query: 234 MKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAA 293
+EN++ +Q +++ L T+ P+ I L+ ++ PQ+ L F M+F
Sbjct: 232 RRENILAFADQTKIARELVTLKTDVPLDIDLDGLVLE-PQNGPKLIGFLKAMEFTSLTRR 290
Query: 294 LGEETSQEDFEVDFTEVE 311
+ E T + V+ VE
Sbjct: 291 VAEATDTDASSVEPCHVE 308
>gi|17988108|ref|NP_540742.1| DNA POLYMERASE I [Brucella melitensis]
gi|25288541|pir||AC3480 DNA-directed DNA polymerase (EC 2.7.7.7)
[imported] - Brucella melitensis (strain 16M)
gi|17983861|gb|AAL53006.1| DNA POLYMERASE I [Brucella melitensis
16M]
Length = 994
Score = 378 bits (971), Expect = e-103
Identities = 207/409 (50%), Positives = 272/409 (65%), Gaps = 13/409 (3%)
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E+PL +VLA+ME RGI V + L+ ++ + + EIY LAG++F I SPKQLG
Sbjct: 590 LERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYEDEIYALAGEKFTIGSPKQLGD 649
Query: 539 LLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQ 596
+LF +GLP KTKTG +ST+ VLE LA PL KI+++RQ+TKL+STY L
Sbjct: 650 ILFGKMGLP--GASKTKTGQWSTSAQVLEDLAAEGHPLPRKIVDWRQLTKLKSTYTDALP 707
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
+I + ++HT Y T TGRLSSSDPNLQNIPVR +GR IR AF+ N L+S+
Sbjct: 708 GFINPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRTAEGRKIRTAFIAEPGNK-LISA 766
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPND-RRNAKAVNF 714
DYSQIELR+LAH++ L AF +G DIH TA +FG+ P P++ RR AKA+NF
Sbjct: 767 DYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGV--PVEGMPSEVRRRAKAINF 824
Query: 715 GIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR 774
GI+YGIS FGL++ L IPR+ A QYI TYFER+PGIK+YME A++ GYVET+F RR
Sbjct: 825 GIIYGISAFGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRR 884
Query: 775 RSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHD 834
PDI + N +R F ER AIN+PIQG+AADI++ AMI ++ L K ++MLLQVHD
Sbjct: 885 AHYPDIRASNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHD 944
Query: 835 EIVLEVPNEEIGAIRELVTKTMES----AISLSVPLIADENAGETWYEA 879
E++ EVP E+ +V + ME+ A+SL+VPL D A W EA
Sbjct: 945 ELIFEVPENEVEKTIPVVRRVMENAAMPAVSLAVPLRVDARAAHNWDEA 993
Score = 171 bits (432), Expect = 7e-41
Identities = 107/318 (33%), Positives = 163/318 (50%), Gaps = 17/318 (5%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGR------ 54
M + L L+DGS FRA+ AL + GL A+ GF ML +L
Sbjct: 17 MKKGDHLFLVDGSGYIFRAYHALPPLT---RKTDGLPVGAVSGFCNMLWKLLKDARNTDV 73
Query: 55 -VQPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEH 113
V P+H V FD TFR E+Y DYK R P++ QF IRQ + E E
Sbjct: 74 GVVPTHFAVIFDYSSKTFRKEIYPDYKANRTAPPEDLIPQFGLIRQATRAFNLPCIEKEG 133
Query: 114 YEADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYL 173
+EADD+I T A+ AE + D+T++S DKDL+QL + + S K ++ + +
Sbjct: 134 FEADDLIATYARLAEKAGG--DVTIISSDKDLMQLVTPSVSMYDSMKD----KQISIPEV 187
Query: 174 MEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSK 233
+EK G+ P + IDL++L GD +DN+PG+ IG KT +LL E+G L+ + +KQ+K
Sbjct: 188 IEKWGVPPEKMIDLQSLTGDSTDNVPGIPGIGPKTAAQLLEEFGDLDTLLARASEIKQNK 247
Query: 234 MKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAA 293
+EN++ +Q +++ L T+ P+ I L+ ++ PQ+ L F M+F
Sbjct: 248 RRENILAFADQTKIARELVTLKTDVPLDIDLDGLVLE-PQNGPKLIGFLKAMEFTSLTRR 306
Query: 294 LGEETSQEDFEVDFTEVE 311
+ E T + V+ VE
Sbjct: 307 VAEATDTDASSVEPCHVE 324
>gi|17546949|ref|NP_520351.1| PROBABLE DNA POLYMERASE I PROTEIN
[Ralstonia solanacearum]
gi|17429250|emb|CAD15937.1| PROBABLE DNA POLYMERASE I PROTEIN
[Ralstonia solanacearum]
Length = 946
Score = 377 bits (968), Expect = e-103
Identities = 218/501 (43%), Positives = 317/501 (62%), Gaps = 20/501 (3%)
Query: 394 AFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKT---RFLEHLA 450
A DT L Y+L++ ++ + +A +L T + V GKGA + ++ R E+ A
Sbjct: 450 AHDTMLQSYVLASHRNHGMDALAERVLHLKTITYEEVCGKGASQIGFDEVPLDRATEYAA 509
Query: 451 KKVKVLVDSEANIMQQLKANEQEELLFE-MEQPLANVLAKMEIRGIKVKKNTLNEMAIE- 508
+ + + + ++ +++ ++E +E P + VL KME G+ + L +
Sbjct: 510 EDADITLRLHRALYPKVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGL 569
Query: 509 NQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGY-STAVDVLER 567
Q+++E L Q+ Y LAGQ FN+NSPKQ+G++ F L LPV KKT +G ST +VL++
Sbjct: 570 GQRLLE-LEQQAYALAGQPFNLNSPKQIGEIFFTQLKLPV--IKKTASGAPSTDEEVLQK 626
Query: 568 LAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNL 626
LA PL +L++R + KL+STY L + + G++HT Y Q TGRL+S+DPNL
Sbjct: 627 LAEDYPLPKLLLDFRGLAKLKSTYTDKLPKMVNPQTGRVHTTYGQATAVTGRLASTDPNL 686
Query: 627 QNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHT 686
QNIPVR E+GR IR+AFV + +V++S+DYSQIELR++AH+S+DE L+ AF+EG D+H
Sbjct: 687 QNIPVRTEEGRRIREAFV-APAGSVIVSADYSQIELRIMAHLSEDEGLLRAFREGQDVHR 745
Query: 687 STAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFER 746
+TA VFG+ P VT RR AK +NFG++YG+S FGL+ NLGI R AK YID YF R
Sbjct: 746 ATAAEVFGV-TPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYIDRYFAR 804
Query: 747 YPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAAD 806
YPG+ YM+ A ++GYVET+F RR LPDIN N RQ AER AIN+P+QG+AAD
Sbjct: 805 YPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAAD 864
Query: 807 ILKIAMINLDRVLD------KGG--YKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMES 858
++K++M+ + LD K G +++ ++QVHDE+VLEVP EE+ +RE + + M
Sbjct: 865 LIKLSMLAVQDWLDGSPSAGKPGAPMRTRQVMQVHDELVLEVPQEELSLVRERLPELMCG 924
Query: 859 AISLSVPLIADENAGETWYEA 879
SL VPL+A+ G W EA
Sbjct: 925 VASLRVPLVAEVGVGANWEEA 945
Score = 149 bits (376), Expect = 2e-34
Identities = 102/299 (34%), Positives = 152/299 (50%), Gaps = 18/299 (6%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILV 62
++ LLL+DGSS +RA+ AL + +N G T AIYG ML + +
Sbjct: 6 SQETLLLVDGSSYLYRAYHALPD----LRNGEGFPTGAIYGIVNMLRKLRNDYPAKYSAC 61
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
FDA TFR E+Y YK RA PD+ R+Q I + + LG ++ EADD+IGT
Sbjct: 62 VFDAKGKTFRDELYPAYKEHRAPMPDDLRQQIEPIHEAVRALGWPILMVDGVEADDVIGT 121
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
LA++ A+ E V +GDKDL QL + + ++ E PA ++ K G+ P
Sbjct: 122 LAER--AAREGIRTVVSTGDKDLAQLVNDH----VTLVNTMSNETLDPAGVLAKFGVPPG 175
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
+ +D +L+GD DN+PGV K+G KT +K L EYGSL+ + +K + ENL N
Sbjct: 176 KIVDYLSLIGDTVDNVPGVPKVGPKTAVKWLGEYGSLDSVIARAGEIK-GVVGENLRNTL 234
Query: 243 EQAFLSKTLATINIASPITIGLE----DILYSGPQDIKALSQFYDEMDFKQF-KAALGE 296
+ +L K + + + + E + L G +D L F+ FK + + A GE
Sbjct: 235 D--WLPKGRELLTVKTDCDLATEVPTFEALVDGGEDRAKLVDFFGRYGFKTWLREASGE 291
>gi|23015747|ref|ZP_00055515.1| hypothetical protein
[Magnetospirillum magnetotacticum]
Length = 945
Score = 371 bits (953), Expect = e-101
Identities = 202/401 (50%), Positives = 270/401 (66%), Gaps = 7/401 (1%)
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYEL-AGQEFNINSPKQLG 537
+E+PL V+A ME GIKV + L ++ + + + L E+ L G+ FN+ SP+QLG
Sbjct: 545 LERPLVPVIAAMERDGIKVDRPQLMALSEDFGRRLTELETEVVALNNGEAFNLGSPQQLG 604
Query: 538 KLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQ 596
K+LFETL LP KKTKTG ++T DVLE LA + PL ++L++RQ++KL+ TY L
Sbjct: 605 KVLFETLNLP--GGKKTKTGQWATGADVLEDLAHLHPLPARLLDWRQLSKLKGTYTDALV 662
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
I G++HT Y T TGRLSSSDPNLQNIP+R E+GR IR AFV +E L+S+
Sbjct: 663 AQINPATGRVHTSYALAATTTGRLSSSDPNLQNIPIRTEEGRKIRHAFV-AEPGKRLISA 721
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELR++AH+++ E L AF +GADIH TA +VFG+ + + RR AKA+NFG
Sbjct: 722 DYSQIELRLVAHVAEIEGLRDAFADGADIHAITASQVFGVPL-DGMDSALRRRAKAINFG 780
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
I+YGIS FGL+ LGIP+ AK YI+ YF RYP I+ +ME EA++KG+V TLF R+
Sbjct: 781 IIYGISPFGLAAQLGIPQGEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKV 840
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
P I +N +R FAER AIN PIQG AADI+K AMI L L G K+++LLQVHDE
Sbjct: 841 FTPGIKDKNGAMRAFAERAAINGPIQGGAADIIKRAMIRLPAALVAEGLKARLLLQVHDE 900
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETW 876
+VLE P +E A +V + ME+A +LSVPL+ + ++W
Sbjct: 901 LVLEAPEDETEATVRVVKRVMEAAATLSVPLLVEAGIADSW 941
Score = 177 bits (450), Expect = 6e-43
Identities = 107/294 (36%), Positives = 151/294 (50%), Gaps = 11/294 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
+T + LIDGS FRAF L G NA+YGF ML +L Q H+
Sbjct: 20 LTAPRHVTLIDGSGFIFRAFHGL----PPMTRPDGTPVNAVYGFTTMLMKLLADSQSDHV 75
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD+ + TFR+E+Y +YK R PDE QFP +R+ + ELE +EADD+I
Sbjct: 76 AVIFDSSRKTFRSEIYPEYKAHRPPAPDELVPQFPLVREATRAFDLPAIELEGFEADDLI 135
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A+ A + +T+VS DKDL+QL + K A E A + EK G+
Sbjct: 136 ATYARLAVEAGA--SVTIVSSDKDLMQLVGPGVDMYDPMKNRAIGE----AEVREKFGVA 189
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P + +D++AL GD SDN+PGV IG KT +L+ EYG L+ + +KQ K +E+LI
Sbjct: 190 PDKVVDVQALCGDSSDNVPGVPGIGVKTAAQLIEEYGDLDTLLARASEIKQPKRRESLIE 249
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL 294
E A +S+ L + +P+ + L D+ P K L+ F F+ L
Sbjct: 250 HAELARISRQLVRLRTDAPVPVPLADLDVKPPAPEK-LAAFCAAQGFRSLMGRL 302
>gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas
fluorescens]
Length = 939
Score = 370 bits (951), Expect = e-101
Identities = 220/493 (44%), Positives = 311/493 (62%), Gaps = 10/493 (2%)
Query: 394 AFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLE---HL 449
AFDT L Y+L ST + + ++A+ Y N + + GKGAK+ ++ + +
Sbjct: 449 AFDTMLESYVLNSTATRHDMDSLAQKYLNHTTVSFQDIAGKGAKQLTFDQIALEQAGPYA 508
Query: 450 AKKVKVLVDSEANIMQQLKA-NEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIE 508
A+ V + + ++L A +L ++E PL VLA++E +G V + L +IE
Sbjct: 509 AEDADVTLRLHQTLFEKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQSIE 568
Query: 509 NQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERL 568
+ L +E +E+AG+EFN+ SPKQLG +L+E LGLPV + K K STA +VL +L
Sbjct: 569 LGNKMVALEREAFEIAGEEFNLGSPKQLGVILYEKLGLPV-LKKTAKGQPSTAEEVLAKL 627
Query: 569 APISPLVTKIL-EYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNL 626
A + K+L E+R ++KL+STY L + I G+IHT Y Q + TGRLSSSDPNL
Sbjct: 628 AEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVASTGRLSSSDPNL 687
Query: 627 QNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHT 686
QNIPVR +GR IR+AFV + LL++DYSQIELR++AH+S+DE L+ AF+ D+HT
Sbjct: 688 QNIPVRTAEGRRIRQAFVAPKGYK-LLAADYSQIELRIMAHLSRDEGLMNAFRNNLDVHT 746
Query: 687 STAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFER 746
+TA VF +E E VT + RR AKA+NFG++YG+ L ++G+ K AK YIDTYF R
Sbjct: 747 ATAAEVFKVELNE-VTSDQRRGAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDTYFAR 805
Query: 747 YPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAAD 806
YPG++ YM+ +A D+G+VET+F RR LPDINS R AERTAIN+P+QG+AAD
Sbjct: 806 YPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAERTAINAPMQGTAAD 865
Query: 807 ILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPL 866
I+K AM+ +D L G +K++LQVHDE+VLEV + + +RE + M A L VPL
Sbjct: 866 IIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVREEIRVHMSEAAKLDVPL 925
Query: 867 IADENAGETWYEA 879
+ + G W EA
Sbjct: 926 LVEVGVGNNWDEA 938
Score = 164 bits (416), Expect = 5e-39
Identities = 113/303 (37%), Positives = 157/303 (51%), Gaps = 18/303 (5%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DGSS +RAF AL + GL T A+ G ML + + S V FDA
Sbjct: 10 LVLVDGSSYLYRAFHAL----PPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDA 65
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR EMYA+YK R PD+ R Q + Q + LG +E EADD+IGTLA+
Sbjct: 66 KGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARS 125
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
+ A++ + + +GDKD+ QL D + + + G + E + EK G+ P Q ID
Sbjct: 126 SAAADR--PVIISTGDKDMAQLVDGHITLVNTMSGSSMDVE----GVKEKFGVAPEQIID 179
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLL-SEYGSLEGIYENIEAMKQ------SKMKENLI 239
ALMGD SDNIPGV IG KT LL G L +Y ++ + + L
Sbjct: 180 YLALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLLIRGAKTLPAKLE 239
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETS 299
KE AFLS LATI + P+ IGL+D L GP+D L + Y ++FK + L +
Sbjct: 240 EHKEMAFLSYQLATIKVDVPLDIGLDD-LQMGPEDPAKLYELYTLLEFKSWLNDLDRDAK 298
Query: 300 QED 302
+++
Sbjct: 299 RQE 301
>gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex
Of The Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
Length = 539
Score = 369 bits (947), Expect = e-100
Identities = 202/423 (47%), Positives = 285/423 (66%), Gaps = 8/423 (1%)
Query: 461 ANIMQQLKANEQEELLF-EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQE 519
AN+ +L+ E+ L+ E+E+PL+ VLA ME G+++ L +++E + I L E
Sbjct: 122 ANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAE 181
Query: 520 IYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKI 578
++ LAG FN+NS QL ++LF+ LGLP + K KTG ST+ VLE L P+V KI
Sbjct: 182 VFRLAGHPFNLNSRDQLERVLFDELGLPA-IGKTEKTGKRSTSAAVLEALREAHPIVEKI 240
Query: 579 LEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGR 637
L+YR++TKL+STYI L D I G++HTR+ Q T TGRLSSSDPNLQNIPVR G+
Sbjct: 241 LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQ 300
Query: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
IR+AF+ +E+ +L++ DYSQIELRVLAH+S DE+LI F+EG DIHT TA +FG+ +
Sbjct: 301 RIRRAFI-AEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPR 359
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETV 757
E V P RR AK +NFG++YG+S LS L IP + A+ +I+ YF+ +P ++ ++E
Sbjct: 360 -EAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKT 418
Query: 758 VREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817
+ E + +GYVETLF RRR +PD+ +R ++R+ AER A N P+QG+AAD++K+AM+ L
Sbjct: 419 LEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP 478
Query: 818 VLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWY 877
L++ G ++MLLQVHDE+VLE P E A+ L + ME L+VPL + GE W
Sbjct: 479 RLEEMG--ARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWL 536
Query: 878 EAK 880
AK
Sbjct: 537 SAK 539
>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment
Of Dna Polymerase I From T. Aquaticus Bound To A
PrimerTEMPLATE DNA
Length = 539
Score = 369 bits (946), Expect = e-100
Identities = 202/423 (47%), Positives = 285/423 (66%), Gaps = 8/423 (1%)
Query: 461 ANIMQQLKANEQEELLF-EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQE 519
AN+ +L+ E+ L+ E+E+PL+ VLA ME G+++ L +++E + I L E
Sbjct: 121 ANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAE 180
Query: 520 IYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKI 578
++ LAG FN+NS QL ++LF+ LGLP + K KTG ST+ VLE L P+V KI
Sbjct: 181 VFRLAGHPFNLNSRDQLERVLFDELGLPA-IGKTEKTGKRSTSAAVLEALREAHPIVEKI 239
Query: 579 LEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGR 637
L+YR++TKL+STYI L D I G++HTR+ Q T TGRLSSSDPNLQNIPVR G+
Sbjct: 240 LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQ 299
Query: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
IR+AF+ +E+ +L++ DYSQIELRVLAH+S DE+LI F+EG DIHT TA +FG+ +
Sbjct: 300 RIRRAFI-AEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPR 358
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETV 757
E V P RR AK +NFG++YG+S LS L IP + A+ +I+ YF+ +P ++ ++E
Sbjct: 359 -EAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKT 417
Query: 758 VREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817
+ E + +GYVETLF RRR +PD+ +R ++R+ AER A N P+QG+AAD++K+AM+ L
Sbjct: 418 LEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP 477
Query: 818 VLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWY 877
L++ G ++MLLQVHDE+VLE P E A+ L + ME L+VPL + GE W
Sbjct: 478 RLEEMG--ARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWL 535
Query: 878 EAK 880
AK
Sbjct: 536 SAK 538
>gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large
Fragment Of Dna Polymerase I From Thermus Aquaticus
Length = 538
Score = 369 bits (946), Expect = e-100
Identities = 202/423 (47%), Positives = 285/423 (66%), Gaps = 8/423 (1%)
Query: 461 ANIMQQLKANEQEELLF-EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQE 519
AN+ +L+ E+ L+ E+E+PL+ VLA ME G+++ L +++E + I L E
Sbjct: 120 ANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAE 179
Query: 520 IYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKI 578
++ LAG FN+NS QL ++LF+ LGLP + K KTG ST+ VLE L P+V KI
Sbjct: 180 VFRLAGHPFNLNSRDQLERVLFDELGLPA-IGKTEKTGKRSTSAAVLEALREAHPIVEKI 238
Query: 579 LEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGR 637
L+YR++TKL+STYI L D I G++HTR+ Q T TGRLSSSDPNLQNIPVR G+
Sbjct: 239 LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQ 298
Query: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
IR+AF+ +E+ +L++ DYSQIELRVLAH+S DE+LI F+EG DIHT TA +FG+ +
Sbjct: 299 RIRRAFI-AEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPR 357
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETV 757
E V P RR AK +NFG++YG+S LS L IP + A+ +I+ YF+ +P ++ ++E
Sbjct: 358 -EAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKT 416
Query: 758 VREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817
+ E + +GYVETLF RRR +PD+ +R ++R+ AER A N P+QG+AAD++K+AM+ L
Sbjct: 417 LEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP 476
Query: 818 VLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWY 877
L++ G ++MLLQVHDE+VLE P E A+ L + ME L+VPL + GE W
Sbjct: 477 RLEEMG--ARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWL 534
Query: 878 EAK 880
AK
Sbjct: 535 SAK 537
>gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex
Of The Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex
Of The Large Fragment Of Dna Polymerase I From Thermus
Aquaticus
Length = 539
Score = 369 bits (946), Expect = e-100
Identities = 202/423 (47%), Positives = 285/423 (66%), Gaps = 8/423 (1%)
Query: 461 ANIMQQLKANEQEELLF-EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQE 519
AN+ +L+ E+ L+ E+E+PL+ VLA ME G+++ L +++E + I L E
Sbjct: 122 ANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAE 181
Query: 520 IYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKI 578
++ LAG FN+NS QL ++LF+ LGLP + K KTG ST+ VLE L P+V KI
Sbjct: 182 VFRLAGHPFNLNSRDQLERVLFDELGLPA-IGKTEKTGKRSTSAAVLEALREAHPIVEKI 240
Query: 579 LEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGR 637
L+YR++TKL+STYI L D I G++HTR+ Q T TGRLSSSDPNLQNIPVR G+
Sbjct: 241 LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQ 300
Query: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
IR+AF+ +E+ +L++ DYSQIELRVLAH+S DE+LI F+EG DIHT TA +FG+ +
Sbjct: 301 RIRRAFI-AEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPR 359
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETV 757
E V P RR AK +NFG++YG+S LS L IP + A+ +I+ YF+ +P ++ ++E
Sbjct: 360 -EAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKT 418
Query: 758 VREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817
+ E + +GYVETLF RRR +PD+ +R ++R+ AER A N P+QG+AAD++K+AM+ L
Sbjct: 419 LEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP 478
Query: 818 VLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWY 877
L++ G ++MLLQVHDE+VLE P E A+ L + ME L+VPL + GE W
Sbjct: 479 RLEEMG--ARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWL 536
Query: 878 EAK 880
AK
Sbjct: 537 SAK 539
>gi|1943520|pdb|1KTQ| Dna Polymerase
gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase
Bound To Dctp
Length = 543
Score = 369 bits (946), Expect = e-100
Identities = 202/423 (47%), Positives = 285/423 (66%), Gaps = 8/423 (1%)
Query: 461 ANIMQQLKANEQEELLF-EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQE 519
AN+ +L+ E+ L+ E+E+PL+ VLA ME G+++ L +++E + I L E
Sbjct: 125 ANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAE 184
Query: 520 IYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKI 578
++ LAG FN+NS QL ++LF+ LGLP + K KTG ST+ VLE L P+V KI
Sbjct: 185 VFRLAGHPFNLNSRDQLERVLFDELGLPA-IGKTEKTGKRSTSAAVLEALREAHPIVEKI 243
Query: 579 LEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGR 637
L+YR++TKL+STYI L D I G++HTR+ Q T TGRLSSSDPNLQNIPVR G+
Sbjct: 244 LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQ 303
Query: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
IR+AF+ +E+ +L++ DYSQIELRVLAH+S DE+LI F+EG DIHT TA +FG+ +
Sbjct: 304 RIRRAFI-AEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPR 362
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETV 757
E V P RR AK +NFG++YG+S LS L IP + A+ +I+ YF+ +P ++ ++E
Sbjct: 363 -EAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKT 421
Query: 758 VREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817
+ E + +GYVETLF RRR +PD+ +R ++R+ AER A N P+QG+AAD++K+AM+ L
Sbjct: 422 LEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP 481
Query: 818 VLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWY 877
L++ G ++MLLQVHDE+VLE P E A+ L + ME L+VPL + GE W
Sbjct: 482 RLEEMG--ARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWL 539
Query: 878 EAK 880
AK
Sbjct: 540 SAK 542
>gi|1942202|pdb|1JXE| Stoffel Fragment Of Taq Dna Polymerase I
gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active
Ternary Complex Of The Large Fragment Of Dna Polymerase
I From Thermus Aquaticus
Length = 540
Score = 369 bits (946), Expect = e-100
Identities = 202/423 (47%), Positives = 285/423 (66%), Gaps = 8/423 (1%)
Query: 461 ANIMQQLKANEQEELLF-EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQE 519
AN+ +L+ E+ L+ E+E+PL+ VLA ME G+++ L +++E + I L E
Sbjct: 122 ANLWGRLEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAE 181
Query: 520 IYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPISPLVTKI 578
++ LAG FN+NS QL ++LF+ LGLP + K KTG ST+ VLE L P+V KI
Sbjct: 182 VFRLAGHPFNLNSRDQLERVLFDELGLPA-IGKTEKTGKRSTSAAVLEALREAHPIVEKI 240
Query: 579 LEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGR 637
L+YR++TKL+STYI L D I G++HTR+ Q T TGRLSSSDPNLQNIPVR G+
Sbjct: 241 LQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFNQTATATGRLSSSDPNLQNIPVRTPLGQ 300
Query: 638 LIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
IR+AF+ +E+ +L++ DYSQIELRVLAH+S DE+LI F+EG DIHT TA +FG+ +
Sbjct: 301 RIRRAFI-AEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPR 359
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETV 757
E V P RR AK +NFG++YG+S LS L IP + A+ +I+ YF+ +P ++ ++E
Sbjct: 360 -EAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRAWIEKT 418
Query: 758 VREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817
+ E + +GYVETLF RRR +PD+ +R ++R+ AER A N P+QG+AAD++K+AM+ L
Sbjct: 419 LEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFP 478
Query: 818 VLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWY 877
L++ G ++MLLQVHDE+VLE P E A+ L + ME L+VPL + GE W
Sbjct: 479 RLEEMG--ARMLLQVHDELVLEAPKERAEAVARLAKEVMEGVYPLAVPLEVEVGIGEDWL 536
Query: 878 EAK 880
AK
Sbjct: 537 SAK 539
>gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti]
gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti]
Length = 1003
Score = 368 bits (944), Expect = e-100
Identities = 236/560 (42%), Positives = 330/560 (58%), Gaps = 34/560 (6%)
Query: 344 GNSDTI--YATSNVSLLQEALFKKALSKPIK--------TYDFKRSKVLLNRFNIDLPEP 393
GN D + A N L+EAL A+ KP+ + K V+++R+ ID+ P
Sbjct: 453 GNGDLLGGGALENQIPLREAL---AVLKPLLEDRSVLKIAQNLKYDLVIMSRYGIDVA-P 508
Query: 394 AFDTRLAKYLLS--TTEDNLVSTIARLYT-NLPLDTDDAVYGKGAKRAIPEKT---RFLE 447
DT L Y+L T + + +A + + PL D V G G ++ +
Sbjct: 509 FDDTMLISYVLDAGTPHGHGMDQLAEKWLGHTPLQLKD-VTGSGKSSVGFDQVDIDKATA 567
Query: 448 HLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAI 507
H A+ V + + +L A + +E+PL VLA+ME RGI V + L+ ++
Sbjct: 568 HAAEDADVTLRLWLVLKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSG 627
Query: 508 ENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLE 566
E + L +EIY+L G+ NI SPKQLG +LF +GLP KTKTG +ST+ +LE
Sbjct: 628 ELAQGAARLEEEIYQLIGERINIGSPKQLGDILFGRMGLP--GGSKTKTGQWSTSAQLLE 685
Query: 567 RLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYILEDG-KIHTRYVQDLTQTGRLSSSDP 624
LA L KI+++RQ+TKL+STY L +I D ++HT Y T TGRLSSSDP
Sbjct: 686 DLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFIHPDTRRVHTSYALAATTTGRLSSSDP 745
Query: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684
NLQNIPVR +GR IR AF+ + N L+S+DYSQIELRVLAH+++ L AF +GADI
Sbjct: 746 NLQNIPVRTAEGRKIRTAFIADKGNR-LVSADYSQIELRVLAHVAEIPQLRQAFADGADI 804
Query: 685 HTSTAMRVFGIEKPENVTPND-RRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTY 743
H TA +F + P P++ RR AKA+NFGI+YGIS FGL++ L IPR+ A YI Y
Sbjct: 805 HAITASEMFNV--PVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEASNYIKKY 862
Query: 744 FERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGS 803
FER+PGI++Y+E A++ G+VET+F RR PDI S N +IR F ER +IN+ +QG+
Sbjct: 863 FERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNERASINARLQGT 922
Query: 804 AADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMES----A 859
AADI++ AM+ ++ LD+ ++MLLQVHDE++ E E+ A +V ME+ A
Sbjct: 923 AADIIRRAMVRMEEALDRAKLSARMLLQVHDELIFETVEAEVEATIPVVRHVMENAAMPA 982
Query: 860 ISLSVPLIADENAGETWYEA 879
+S+SVPL D A W EA
Sbjct: 983 VSMSVPLHVDARAANNWDEA 1002
Score = 171 bits (433), Expect = 5e-41
Identities = 109/321 (33%), Positives = 164/321 (50%), Gaps = 25/321 (7%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ---- 56
M + L LIDGS FRA+ AL + + GL A+ GF ML ++ +
Sbjct: 17 MKKGDHLFLIDGSGYIFRAYHALPPLT---RKSDGLPVGAVSGFCNMLWKLMQDARNTDV 73
Query: 57 ---PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEH 113
P+H V FD TFR ++Y +YK R+ P++ QF IRQ + E+E
Sbjct: 74 GIVPTHFAVIFDYSSKTFRNDLYPEYKANRSAPPEDLIPQFGLIRQATKAFNLPCIEMEG 133
Query: 114 YEADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLT-DTNTVVEISKK---GVAEFEEFT 169
+EADD+I T + A + D T++S DKDL+QL DT + + K G+ E
Sbjct: 134 FEADDLIATYCRLAREAGG--DTTIISSDKDLMQLVGDTVGMYDPMKDRQIGIPE----- 186
Query: 170 PAYLMEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAM 229
++EK G+ P + +DL+AL GD DN+PGV IG KT +LL ++G L+G+ +
Sbjct: 187 ---VIEKWGVPPEKMVDLQALTGDSVDNVPGVPGIGPKTAAQLLEQFGDLDGLLARAGEI 243
Query: 230 KQSKMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQ 289
KQ K +E++I + ++A +S+ L T+ P+ GL+D + P D L F M+F
Sbjct: 244 KQDKRRESIIANTDKALISRQLVTLKNDVPVAEGLDDFVLHAP-DGPKLIGFLKTMEFTS 302
Query: 290 FKAALGEETSQEDFEVDFTEV 310
+ E TS E +V V
Sbjct: 303 LTRRVAEATSTEAGDVQAVAV 323
>gi|23059541|ref|ZP_00084500.1| hypothetical protein [Pseudomonas
fluorescens PfO-1]
Length = 935
Score = 367 bits (941), Expect = e-100
Identities = 219/493 (44%), Positives = 309/493 (62%), Gaps = 10/493 (2%)
Query: 394 AFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLE---HL 449
AFDT L Y+L ST + + ++A+ Y + + + GKGAK+ ++ + +
Sbjct: 445 AFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQDIAGKGAKQLTFDQIALEQAGPYA 504
Query: 450 AKKVKVLVDSEANIMQQLKA-NEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIE 508
A+ V + + +L A +L ++E PL VLA++E +G V L +IE
Sbjct: 505 AEDADVTLRLHQTLFDKLSAIPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQSIE 564
Query: 509 NQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERL 568
+ L +E +E+AG+EFN+ SPKQLG +L+E LGLPV + K K STA +VL +L
Sbjct: 565 LGNKMIALEREAFEIAGEEFNLGSPKQLGVILYEKLGLPV-LKKTAKGQPSTAEEVLAKL 623
Query: 569 APISPLVTKIL-EYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNL 626
A + K+L E+R ++KL+STY L + I G+IHT Y Q + TGRLSSSDPNL
Sbjct: 624 AEDDHRLPKVLMEHRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAVASTGRLSSSDPNL 683
Query: 627 QNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHT 686
QNIPVR +GR IR+AFV + LL++DYSQIELR++AH+S+DE L+ AF+ D+HT
Sbjct: 684 QNIPVRTAEGRRIRQAFVAPKGYK-LLAADYSQIELRIMAHLSRDEGLMNAFRNNLDVHT 742
Query: 687 STAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFER 746
+TA VF +E E VT + RR AKA+NFG++YG+ L ++G+ K AK YIDTYF R
Sbjct: 743 ATAAEVFKVELNE-VTSDQRRGAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDTYFAR 801
Query: 747 YPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAAD 806
YPG++ YM+ +A D+G+VET+F RR LPDINS R AERTAIN+P+QG+AAD
Sbjct: 802 YPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAERTAINAPMQGTAAD 861
Query: 807 ILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPL 866
I+K AM+ +D L G +K++LQVHDE+VLEV + + +RE + M A L VPL
Sbjct: 862 IIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVREEIRVHMSEAAKLDVPL 921
Query: 867 IADENAGETWYEA 879
+ + G W EA
Sbjct: 922 LVEVGVGNNWDEA 934
Score = 164 bits (414), Expect = 9e-39
Identities = 112/303 (36%), Positives = 155/303 (50%), Gaps = 18/303 (5%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DGSS +RAF AL + GL T A+ G ML + + S V FDA
Sbjct: 6 LVLVDGSSYLYRAFHAL----PPLTTSKGLPTGAVKGVLNMLKSLRKQYPDSPFAVVFDA 61
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR EMYA+YK R PD+ R Q + Q + LG +E EADD+IGTLA+
Sbjct: 62 KGGTFRDEMYAEYKANRPSMPDDMRVQIEPLHQSVIALGFPLLCVEGVEADDVIGTLARS 121
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
+ A++ + + +GDKD+ QL D + + + G + EK G+ P Q ID
Sbjct: 122 SAAADR--PVIISTGDKDMAQLVDGHITLVNTMSG----SSMDVDGVKEKFGVAPEQIID 175
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLL-SEYGSLEGIYENIEAMKQ------SKMKENLI 239
ALMGD SDNIPGV IG KT LL G L +Y ++ + + L
Sbjct: 176 YLALMGDSSDNIPGVPGIGPKTASGLLVGVNGGLTELYAQLDIVPTLPIRGAKTLPAKLE 235
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETS 299
KE AFLS LATI + P+ IGL+D L GP+D L + Y ++FK + L +
Sbjct: 236 EHKEMAFLSYQLATIKVDVPLDIGLDD-LQMGPEDPAKLYELYTLLEFKSWLNDLDRDAK 294
Query: 300 QED 302
+++
Sbjct: 295 RQE 297
>gi|32030201|ref|ZP_00133093.1| hypothetical protein [Haemophilus
somnus 2336]
Length = 951
Score = 363 bits (931), Expect = 1e-98
Identities = 215/511 (42%), Positives = 318/511 (62%), Gaps = 11/511 (2%)
Query: 375 DFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGKG 434
+ K + +I L FDT L Y+L +T + + ++ Y + +++ GKG
Sbjct: 445 NIKYDLTIFANHHIQLNGVCFDTMLQSYVLDSTGRHNMGALSERYLGHQVIEFESIAGKG 504
Query: 435 AKRAIPEK---TRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKM 490
K+ +K + E+ A+ + + + Q+L+ + +F ++E PL VL+ M
Sbjct: 505 KKQVTFDKIAIAQATEYAAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSTM 564
Query: 491 EIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEM 550
E G+ + L + + + + + L Q++Y+ AG EFN+ S KQL ++LF L LP+ +
Sbjct: 565 ERNGVLIDSQALLKQSEKIARRLTALEQQVYQEAGAEFNLASTKQLQEILFTKLALPI-I 623
Query: 551 TKKTKTGYSTAVDVLERLAPISPLVTKIL-EYRQITKLQSTYIIGLQDYI-LEDGKIHTR 608
K K ST DVLE LA +V K+L E+R + KL+STY L + + G++HT
Sbjct: 624 AKTPKGAPSTNEDVLETLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTS 683
Query: 609 YVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHI 668
Y Q +T TGRLSSSDPNLQNIP++ E+GR IR+AF+ + + +++DYSQIELR++AH+
Sbjct: 684 YHQAVTATGRLSSSDPNLQNIPIKNEEGRCIRQAFIARKGYKI-IAADYSQIELRIMAHL 742
Query: 669 SKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHN 728
S+D LI AF EG DIH STA +FGI E VT RR+AKA+NFG++YG+S FGLS+
Sbjct: 743 SQDNGLIMAFNEGKDIHRSTAAEIFGIPLNE-VTSEQRRSAKAINFGLIYGMSSFGLSNQ 801
Query: 729 LGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIR 788
LGI R A++Y+D YF+RYPG++ +M + +AK++GYVETLF RR LP+INS N R
Sbjct: 802 LGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEINSSNAIRR 861
Query: 789 QFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAI 848
+ AER AIN+P+QG+AADI+K+AMI + + K +M++QVHDE+V EV ++
Sbjct: 862 KGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDI--QMIMQVHDELVFEVKENKVDEY 919
Query: 849 RELVTKTMESAISLSVPLIADENAGETWYEA 879
L+ ME+A LSVPLI D G+ W EA
Sbjct: 920 SALIKSLMENAAHLSVPLIVDIGVGDNWDEA 950
Score = 168 bits (426), Expect = 3e-40
Identities = 117/318 (36%), Positives = 168/318 (52%), Gaps = 38/318 (11%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RAF+A N+ G T A+YG ML ++ +VQP+HI V
Sbjct: 6 ENPLVLVDGSSYLYRAFYAF----PPLTNSLGEPTGAMYGVLNMLKSLIAQVQPTHIAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R+Q + + LGI +E EADD+IGTL
Sbjct: 62 FDAKGKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVV-------EISKKGVAEFEEFTPAYLMEK 176
A Q AS + ++ + +GDKD+ QL D N ++ + + GV ++K
Sbjct: 122 AVQ--ASQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGV-----------IDK 168
Query: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------ 230
GI P +D ALMGD SDNIPGV+ +GEKT L LL GS+ IY N+E +
Sbjct: 169 YGIPPELIVDYLALMGDSSDNIPGVSGVGEKTALGLLQGIGSMAEIYANLEKVAGLSVRG 228
Query: 231 QSKMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
K+ E L + K A LS LATI + I D L G + L +++ +FK++
Sbjct: 229 AKKLGEKLSSAKADADLSYLLATIKTNVELDI-TPDQLVLGQNNQDQLIEYFARYEFKRW 287
Query: 291 -------KAALGEETSQE 301
+++L + T QE
Sbjct: 288 LNEVISGESSLTKATQQE 305
>gi|15887465|ref|NP_353146.1| AGR_C_169p [Agrobacterium tumefaciens]
gi|17934029|ref|NP_530819.1| DNA polymerase I [Agrobacterium
tumefaciens str. C58 (U. Washington)]
gi|25288539|pir||B97372 DNA polymerase I (pol I) [imported] -
Agrobacterium tumefaciens (strain C58, Cereon)
gi|25288540|pir||AI2589 DNA polymerase I [imported] - Agrobacterium
tumefaciens (strain C58, Dupont)
gi|15154982|gb|AAK85931.1| AGR_C_169p [Agrobacterium tumefaciens str.
C58 (Cereon)]
gi|17738430|gb|AAL41135.1| DNA polymerase I [Agrobacterium
tumefaciens str. C58 (U. Washington)]
Length = 1031
Score = 360 bits (923), Expect = 7e-98
Identities = 232/537 (43%), Positives = 314/537 (58%), Gaps = 29/537 (5%)
Query: 357 LLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLST--TEDNLVST 414
L EA+ K A + KR V++ F+ DT L Y+L T + +
Sbjct: 509 LEDEAVLKVAQNLKYDYLLMKRHGVVMRSFD--------DTMLISYVLEAGKTTHGMDTL 560
Query: 415 IARLYTNLPLDTDDAVYGKGAKRAIP----EKTRFLEHLAKKVKVLVDSEANIMQQLKAN 470
R + P+ D V G G K +I + + A+ V + + +L +
Sbjct: 561 SERWLGHTPIAYKD-VTGSG-KSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLVSE 618
Query: 471 EQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNI 530
++ +E+PL VLA ME RGI V + L+ ++ E + + +EIYELAG+ FNI
Sbjct: 619 RLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNI 678
Query: 531 NSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPI-SPLVTKILEYRQITKLQ 588
SPKQLG +LF +GLP KTKTG +ST+ VLE LA + L KI+++RQ+TKL+
Sbjct: 679 GSPKQLGDILFGRMGLP--GGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLK 736
Query: 589 STYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSE 647
STY L YI E ++HT Y T TGRLSSS+PNLQNIPVR +GR IR AF+ +
Sbjct: 737 STYTDALPSYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTP 796
Query: 648 DNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPND-R 706
+ LLS+DYSQIELRVLAH++ L AF+ G DIH TA +FG+ P P++ R
Sbjct: 797 GHK-LLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGV--PVEGMPSEVR 853
Query: 707 RNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGY 766
R AKA+NFGI+YGIS FGL++ L I R A YI YFER+PGI++YME A++ GY
Sbjct: 854 RRAKAINFGIIYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGY 913
Query: 767 VETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKS 826
VET+F RR P+I S N +++ F ER AIN+PIQGSAADI++ AMI ++ L+ +
Sbjct: 914 VETIFGRRAHYPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAEKLSA 973
Query: 827 KMLLQVHDEIVLEVPNEEIGAIRELVTKTMES----AISLSVPLIADENAGETWYEA 879
+MLLQVHDE++ EV EI +V ME AIS+ VPL D A + W EA
Sbjct: 974 RMLLQVHDELIFEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPLKVDARAADNWDEA 1030
Score = 177 bits (450), Expect = 5e-43
Identities = 112/313 (35%), Positives = 164/313 (51%), Gaps = 17/313 (5%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGR------ 54
M + L L+DGS FRAF A+ ++R + GL NA+ GF ML +L
Sbjct: 34 MKKGDHLFLVDGSGFIFRAFHAI-PPLNR--KSDGLPVNAVSGFCNMLWKLLKDARNTDV 90
Query: 55 -VQPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEH 113
V P+H V FD TFR E+Y YK R+ P++ QF IR+ + E E
Sbjct: 91 GVTPTHFAVIFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEG 150
Query: 114 YEADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYL 173
+EADDII T A+QAEA D+T++S DKDL+QL N + + K ++ +
Sbjct: 151 FEADDIIATYARQAEAIGA--DVTIISSDKDLMQLVTANVHMYDAMKD----KQIGVPDV 204
Query: 174 MEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSK 233
+EK G+ P + IDL+A+ GD +DN+PG+ IG KT +LL EYG L+ + +KQ K
Sbjct: 205 IEKWGVGPEKMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQK 264
Query: 234 MKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAA 293
+EN+I + E A LS+ L + P+ LE+++ PQ+ L F M+F
Sbjct: 265 RRENIIANAELARLSRQLVALRTDVPLEQSLEELVLE-PQNGPKLIAFLKAMEFTTLTRR 323
Query: 294 LGEETSQEDFEVD 306
+ E T + +D
Sbjct: 324 VAEATDSDASAID 336
>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of
Dna Polymerase I Klenow Fragment With Dna
Length = 605
Score = 359 bits (922), Expect = 1e-97
Identities = 224/515 (43%), Positives = 324/515 (62%), Gaps = 17/515 (3%)
Query: 375 DFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGK 433
+ K + +L + I+L AFDT L Y+L S + + ++A + T + + GK
Sbjct: 97 NLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK 156
Query: 434 GAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE-MEQPLANV 486
G + A+ E R+ A+ V + + L+ ++ +FE +E PL V
Sbjct: 157 GKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPV 213
Query: 487 LAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGL 546
L+++E G+K+ L+ + E + L ++ +E+AG+EFN++S KQL +LFE G
Sbjct: 214 LSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQG- 272
Query: 547 PVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGK 604
++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L I + G+
Sbjct: 273 -IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGR 331
Query: 605 IHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRV 664
+HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED V++S+DYSQIELR+
Sbjct: 332 VHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSADYSQIELRI 390
Query: 665 LAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFG 724
+AH+S+D+ L+ AF EG DIH +TA VFG+ E VT RR+AKA+NFG++YG+S FG
Sbjct: 391 MAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-ETVTSEQRRSAKAINFGLIYGMSAFG 449
Query: 725 LSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRN 784
L+ L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR LPDI S N
Sbjct: 450 LARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSN 509
Query: 785 FNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844
R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE+V EV ++
Sbjct: 510 GARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDD 569
Query: 845 IGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+ A+ + + + ME+ L VPL+ + +GE W +A
Sbjct: 570 VDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQA 604
>gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi
35000HP]
gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi
35000HP]
Length = 962
Score = 359 bits (922), Expect = 1e-97
Identities = 215/498 (43%), Positives = 310/498 (62%), Gaps = 10/498 (2%)
Query: 388 IDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRF-- 445
I+L AFDT L Y L++T + + +A Y + + + GKG + +K
Sbjct: 468 IELQGVAFDTMLESYTLNSTGRHNMDELAERYLDHKTIAFEDIAGKGKNQLTFDKIAIET 527
Query: 446 -LEHLAKKVKVLVDSEANIMQQL-KANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLN 503
E+ A+ + + ++ L K +L E+E PL NVLA++E G+ + + L
Sbjct: 528 ATEYAAEDADITMKLHQQLITSLAKTPSLIKLFNEIEMPLVNVLARVEQNGVLIDSDKLL 587
Query: 504 EMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVD 563
+ E ++ + + ++ AGQ FN+ S KQL ++LFE L LPV + K K ST +
Sbjct: 588 AQSKEMEQRLAEVEIAVHTAAGQAFNLASTKQLQEILFEKLALPV-LKKTPKGAPSTNEE 646
Query: 564 VLERLAPISPLVTKIL-EYRQITKLQSTYIIGLQDYILE-DGKIHTRYVQDLTQTGRLSS 621
VLE+LA LV K+L E+R ++KL+STY L I + G++HT Y Q +T TGRLSS
Sbjct: 647 VLEQLAQQGHLVPKLLSEHRALSKLKSTYTDKLPKMINQHTGRVHTSYHQAVTTTGRLSS 706
Query: 622 SDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEG 681
SDPNLQNIP+R E GR IR+AF+ + D ++++DYSQIELR++AH++ DE +I AF G
Sbjct: 707 SDPNLQNIPIRTEAGRRIRQAFI-ARDGYKIVAADYSQIELRIMAHLANDEGMITAFANG 765
Query: 682 ADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYID 741
DIH +TA +FG+ E VT RR+AKA+NFG++YG+SDFGL++ L I R AK+Y+
Sbjct: 766 QDIHQATAAEIFGLSLAE-VTSEQRRSAKAINFGLIYGMSDFGLANQLAISRDEAKEYMA 824
Query: 742 TYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQ 801
YF+RYP ++ +M + A KGYVETLF RR LP+I S N R+ AER AIN+P+Q
Sbjct: 825 RYFQRYPNVQQFMRDIRESASVKGYVETLFGRRLYLPEIKSNNAIRRKAAERLAINAPMQ 884
Query: 802 GSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAIS 861
G+AADI+KIAMI++D+ + + KM++QVHDE++ EV E I L+ ME AI+
Sbjct: 885 GTAADIIKIAMISIDKQI-RADQNIKMIMQVHDELIFEVKQECIEYYTGLIKTEMEKAIA 943
Query: 862 LSVPLIADENAGETWYEA 879
+ VPLIA+ G W EA
Sbjct: 944 MKVPLIAEVGVGANWDEA 961
Score = 155 bits (392), Expect = 3e-36
Identities = 107/294 (36%), Positives = 158/294 (53%), Gaps = 19/294 (6%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RAF + N+ G T A+YG ML ++ +V PSHI V
Sbjct: 6 QNPLVLVDGSSYLYRAFHVF----NYLTNSGGEPTGAMYGVLNMLRSLVNQVNPSHIAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR +++ YK R PDE R Q + + LGI +E EADD+IGTL
Sbjct: 62 FDAKGKTFRDDLFEQYKSHRPPMPDELRAQIQPLHNIIRALGIPLISIEGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A QA + ++ + +GDKD+ QL + + ++ + + E ++EK GI P
Sbjct: 122 AVQAAQDGK--EVLISTGDKDMAQLVNQHIMLINTMNDSLLDREG-----VIEKYGIPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIE-----AMKQSK-MKE 236
ID AL GD SDNIPGV IGEKT L LL GSL+ IY N++ +++ +K +
Sbjct: 175 LIIDYLALQGDASDNIPGVKGIGEKTALALLQGIGSLQTIYANLDRVATLSVRGAKTLAT 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
L+ +K+ A LS LATI + + + S Q + L ++ +FK++
Sbjct: 235 KLVAEKQAADLSYLLATIKTDVALDMTHHQLTPSA-QRREELIALFERYEFKRW 287
>gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I (Klenow Fragment)
(E.C.2.7.7.7) Mutant With Asp 355 Replaced By Ala
(D355a) Complexed With Dna
Length = 605
Score = 359 bits (921), Expect = 1e-97
Identities = 224/515 (43%), Positives = 324/515 (62%), Gaps = 17/515 (3%)
Query: 375 DFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGK 433
+ K + +L + I+L AFDT L Y+L S + + ++A + T + + GK
Sbjct: 97 NLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK 156
Query: 434 GAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE-MEQPLANV 486
G + A+ E R+ A+ V + + L+ ++ +FE +E PL V
Sbjct: 157 GKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPV 213
Query: 487 LAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGL 546
L+++E G+K+ L+ + E + L ++ +E+AG+EFN++S KQL +LFE G
Sbjct: 214 LSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQG- 272
Query: 547 PVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGK 604
++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L I + G+
Sbjct: 273 -IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGR 331
Query: 605 IHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRV 664
+HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED V++S+DYSQIELR+
Sbjct: 332 VHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSADYSQIELRI 390
Query: 665 LAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFG 724
+AH+S+D+ L+ AF EG DIH +TA VFG+ E VT RR+AKA+NFG++YG+S FG
Sbjct: 391 MAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-ETVTSEQRRSAKAINFGLIYGMSAFG 449
Query: 725 LSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRN 784
L+ L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR LPDI S N
Sbjct: 450 LARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSN 509
Query: 785 FNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844
R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE+V EV ++
Sbjct: 510 GARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDD 569
Query: 845 IGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+ A+ + + + ME+ L VPL+ + +GE W +A
Sbjct: 570 VDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQA 604
>gi|229889|pdb|1DPI| DNA Polymerase I (Klenow Fragment)
(E.C.2.7.7.7) - dCMP Complex
gi|576187|pdb|1KFD| Dna Polymerase I (Klenow Fragment)
(E.C.2.7.7.7) Complexed With Dctp
Length = 605
Score = 358 bits (920), Expect = 2e-97
Identities = 224/515 (43%), Positives = 324/515 (62%), Gaps = 17/515 (3%)
Query: 375 DFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGK 433
+ K + +L + I+L AFDT L Y+L S + + ++A + T + + GK
Sbjct: 97 NLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK 156
Query: 434 GAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE-MEQPLANV 486
G + A+ E R+ A+ V + + L+ ++ +FE +E PL V
Sbjct: 157 GKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPV 213
Query: 487 LAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGL 546
L+++E G+K+ L+ + E + L ++ +E+AG+EFN++S KQL +LFE G
Sbjct: 214 LSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQG- 272
Query: 547 PVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGK 604
++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L I + G+
Sbjct: 273 -IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGR 331
Query: 605 IHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRV 664
+HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED V++S+DYSQIELR+
Sbjct: 332 VHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSADYSQIELRI 390
Query: 665 LAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFG 724
+AH+S+D+ L+ AF EG DIH +TA VFG+ E VT RR+AKA+NFG++YG+S FG
Sbjct: 391 MAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-ETVTSEQRRSAKAINFGLIYGMSAFG 449
Query: 725 LSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRN 784
L+ L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR LPDI S N
Sbjct: 450 LARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSN 509
Query: 785 FNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844
R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE+V EV ++
Sbjct: 510 GARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDD 569
Query: 845 IGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+ A+ + + + ME+ L VPL+ + +GE W +A
Sbjct: 570 VDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQA 604
>gi|2982102|pdb|1KFS|A Chain A, All-Oxygen Dna Complexed To The
3'-5' Exonuclease Of Dna Polymerase I From E. Coli
gi|2982104|pdb|1KRP|A Chain A, Rp Isomer Phosphorothioate Dna
Complexed To The 3'-5' Exonuclease Of Dna Polymerase I
From E. Coli
gi|2982108|pdb|1KSP|A Chain A, Sp Isomer Phosphorothioate Dna
Complexed To The 3'-5' Exonuclease Of Dna Polymerase I
From E. Coli
gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur
Substrate And Manganese
gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur
Substrate And Zinc Only
gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal
Substrate And Zinc And Manganese
gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal
Substrate And Zinc Only
gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With
Single-Stranded Substrate And Europium (Iii) Ion
gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of
Dna Polymerase I Klenow Fragment With Short Dna Fragment
Carrying 2'-0- Aminopropyl-Rna Modifications
5'-D(Tcg)-Ap(Auc)-3'
gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of
Dna Polymerase I Klenow Fragment With Dna Tetramer
Carrying 2'-O-(3-Aminopropyl)- Rna Modification
5'-D(Tt)-Ap(U)-D(T)-3'
Length = 605
Score = 358 bits (920), Expect = 2e-97
Identities = 224/515 (43%), Positives = 324/515 (62%), Gaps = 17/515 (3%)
Query: 375 DFKRSKVLLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGK 433
+ K + +L + I+L AFDT L Y+L S + + ++A + T + + GK
Sbjct: 97 NLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK 156
Query: 434 GAKR------AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFE-MEQPLANV 486
G + A+ E R+ A+ V + + L+ ++ +FE +E PL V
Sbjct: 157 GKNQLTFNQIALEEAGRY---AAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPV 213
Query: 487 LAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGL 546
L+++E G+K+ L+ + E + L ++ +E+AG+EFN++S KQL +LFE G
Sbjct: 214 LSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLSSTKQLQTILFEKQG- 272
Query: 547 PVEMTKKTKTGY-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGK 604
++ KKT G ST+ +VLE LA PL ILEYR + KL+STY L I + G+
Sbjct: 273 -IKPLKKTPGGAPSTSEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGR 331
Query: 605 IHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRV 664
+HT Y Q +T TGRLSS+DPNLQNIPVR E+GR IR+AF+ ED V++S+DYSQIELR+
Sbjct: 332 VHTSYHQAVTATGRLSSTDPNLQNIPVRNEEGRRIRQAFIAPED-YVIVSADYSQIELRI 390
Query: 665 LAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFG 724
+AH+S+D+ L+ AF EG DIH +TA VFG+ E VT RR+AKA+NFG++YG+S FG
Sbjct: 391 MAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPL-ETVTSEQRRSAKAINFGLIYGMSAFG 449
Query: 725 LSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRN 784
L+ L IPRK A++Y+D YFERYPG+ YME +AK++GYVETL RR LPDI S N
Sbjct: 450 LARQLNIPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSN 509
Query: 785 FNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844
R AER AIN+P+QG+AADI+K AMI +D L + +M++QVHDE+V EV ++
Sbjct: 510 GARRAAAERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDD 569
Query: 845 IGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
+ A+ + + + ME+ L VPL+ + +GE W +A
Sbjct: 570 VDAVAKQIHQLMENCTRLDVPLLVEVGSGENWDQA 604
>gi|15963928|ref|NP_384281.1| PROBABLE DNA POLYMERASE I PROTEIN
[Sinorhizobium meliloti]
gi|15073103|emb|CAC41562.1| PROBABLE DNA POLYMERASE I PROTEIN
[Sinorhizobium meliloti]
Length = 1004
Score = 357 bits (916), Expect = 5e-97
Identities = 199/409 (48%), Positives = 266/409 (64%), Gaps = 13/409 (3%)
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E+PL +VLA ME RGI V + L+ ++ E + L EIY LAG+ F I SPKQLG
Sbjct: 600 LERPLISVLAGMEERGITVDRQILSRLSGELAQGAAALEDEIYRLAGETFTIGSPKQLGD 659
Query: 539 LLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQ 596
+LF +GLP KTKTG +ST+ VLE LA L KI+++RQ+TKL+STY L
Sbjct: 660 ILFGKMGLP--GGSKTKTGQWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALP 717
Query: 597 DYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
++ E ++HT + T TGRLSSSDPNLQNIP+R +GR IR AFV + + L+S+
Sbjct: 718 GFVHPETKRVHTCFAMAATTTGRLSSSDPNLQNIPIRTGEGRKIRTAFVATPGHK-LVSA 776
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPND-RRNAKAVNF 714
DYSQIELRVLAH++ L AF +G DIH TA +FG+ P + P++ RR AKA+NF
Sbjct: 777 DYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGV--PVDGMPSEIRRRAKAINF 834
Query: 715 GIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR 774
GI+YGIS FGL++ L I R A YI YFER+PGI++YME A++ GYVET+F RR
Sbjct: 835 GIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIFGRR 894
Query: 775 RSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHD 834
PDI S N ++R F ER +IN+PIQGSAADI++ AM+ ++ L+ ++MLLQVHD
Sbjct: 895 AHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHD 954
Query: 835 EIVLEVPNEEIGAIRELVTKTMES----AISLSVPLIADENAGETWYEA 879
E++ EV + EI ++ ME+ A+ + VPL D A W EA
Sbjct: 955 ELIFEVEDGEIERTIPVIISVMENAAMPALDMRVPLKVDARAAHNWDEA 1003
Score = 171 bits (434), Expect = 4e-41
Identities = 108/294 (36%), Positives = 155/294 (51%), Gaps = 17/294 (5%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGR------ 54
M N + L L+DGS FRAF A+ ++R + GL NA+ GF ML +L
Sbjct: 1 MKNGDHLFLVDGSGFIFRAFHAI-PPLNR--KSDGLPVNAVAGFCNMLWKLLTDARDTSV 57
Query: 55 -VQPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEH 113
V P+H+ V FD TFR +Y YK R P++ QF IR + E E
Sbjct: 58 GVTPTHLAVIFDYSSKTFRNGLYDQYKANRTAPPEDLIPQFGLIRHATRAFNLPCIEKEG 117
Query: 114 YEADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYL 173
YEADD+I T A+ AE + D+T+VS DKDL+QL + S K ++ T +
Sbjct: 118 YEADDLIATYARLAEEAGA--DVTIVSSDKDLMQLVTPKVSMYDSMKD----KQITVPDV 171
Query: 174 MEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSK 233
+EK G+ P + IDL+A+ GD +DN+PG+ IG KT +LL EYG L+ + +KQ K
Sbjct: 172 IEKWGVPPEKMIDLQAMTGDSTDNVPGIPGIGPKTAAQLLEEYGDLDTLLARAGEIKQQK 231
Query: 234 MKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
+E++I + + A LS+ L T+ +P+ + ED QD L F M+F
Sbjct: 232 RRESIIANADLARLSRELVTLKKDTPLDVPPEDFRLDS-QDGPKLIAFLKAMEF 284
>gi|12229815|sp|Q9S1G2|DPO1_RHILE DNA polymerase I (POL I)
gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium
leguminosarum]
Length = 1016
Score = 354 bits (909), Expect = 3e-96
Identities = 222/520 (42%), Positives = 309/520 (58%), Gaps = 22/520 (4%)
Query: 375 DFKRSKVLLNRFNIDLPEPAFDTRLAKYLLS--TTEDNLVSTIARLYTNLPLDTDDAVYG 432
+ K +LL R+ I+ DT L Y+L T + + + P+ D V G
Sbjct: 503 NLKYDYLLLKRYGIE-TRSFDDTMLISYVLDAGTGAHGMDPLSEKFLGHTPIPYKD-VAG 560
Query: 433 KGAKRA---IPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAK 489
G + + R + A+ V + + +L A + +E+PL VLA+
Sbjct: 561 SGKANVTFDLVDIDRATHYAAEDADVTLRLWLVLKPRLAAAGLTSVYERLERPLLPVLAR 620
Query: 490 MEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVE 549
ME RGI V + L+ ++ E + L EIY LAG+ FNI SPKQLG +LF +GL
Sbjct: 621 MEARGITVDRQILSRLSGELAQGAARLEDEIYVLAGERFNIGSPKQLGDILFGKMGL--S 678
Query: 550 MTKKTKTG-YSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIH 606
KTKTG +ST+ VLE LA L KI+++RQ+TKL+STY L Y+ E ++H
Sbjct: 679 GGSKTKTGQWSTSAQVLEDLAAAGFELPRKIVDWRQVTKLKSTYTDALPGYVHPETKRVH 738
Query: 607 TRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLA 666
T Y T TGRLSSS+PNLQNIPVR +GR IR AF+ + + L+S+DYSQIELRVLA
Sbjct: 739 TSYSLASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHK-LISADYSQIELRVLA 797
Query: 667 HISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPND-RRNAKAVNFGIVYGISDFGL 725
H+++ L AF++G DIH TA +FG+ P P + RR AKA+NFGI+YGIS FGL
Sbjct: 798 HVAEIPQLTKAFEDGVDIHAMTASEMFGV--PVEGMPGEVRRRAKAINFGIIYGISAFGL 855
Query: 726 SHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNF 785
++ L I R A YI YFER+PGI++YME+ A+DKGYVET+F RR + P+I S N
Sbjct: 856 ANQLSIERSEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNP 915
Query: 786 NIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGY--KSKMLLQVHDEIVLEVPNE 843
++R F ER AIN+PIQGSAAD+++ AMI ++ L + G + +MLLQVHDE++ EV ++
Sbjct: 916 SVRAFNERAAINAPIQGSAADVIRRAMIKIEPALVEVGLADRVRMLLQVHDELIFEVEDQ 975
Query: 844 EIGAIRELVTKTMES----AISLSVPLIADENAGETWYEA 879
++ ++ ME+ A+ + VPL D A W EA
Sbjct: 976 DVEKAMPVIVSVMENATMPALEMRVPLRVDARAATNWDEA 1015
Score = 162 bits (411), Expect = 2e-38
Identities = 108/303 (35%), Positives = 157/303 (51%), Gaps = 17/303 (5%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGR------ 54
M + L L+DGS FRAF AL + GL A+ GF ML +L
Sbjct: 18 MKKGDHLFLVDGSGFIFRAFHALPPLT---RKTDGLPIGAVSGFCNMLWKLLRDARNTDV 74
Query: 55 -VQPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEH 113
V P+H+ V FD TFR ++Y YK R+ P+E QF IR+ + E E
Sbjct: 75 GVTPTHLAVIFDYSAKTFRKDLYDAYKANRSAPPEELIPQFGLIREATRAFNLPCIETEG 134
Query: 114 YEADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYL 173
+EADDII T A+QAEA+ D+T+VS DKDL+QL N + S K ++ +
Sbjct: 135 FEADDIIATYARQAEATGA--DVTIVSSDKDLMQLVSPNVHMYDSMKD----KQIGIPDV 188
Query: 174 MEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSK 233
+EK G+ P + IDL+A+ GD DN+PG+ IG KT +LL EYG L+ + E +KQ K
Sbjct: 189 IEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLEEYGDLDTLLERATEIKQVK 248
Query: 234 MKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAA 293
+E ++ + + A LS+ L + P+ + L+ ++ PQ+ L F M+F
Sbjct: 249 RRETILANIDMARLSRDLVRLRTDVPLDLDLDALVLE-PQNGPKLIGFLKTMEFTTLTRR 307
Query: 294 LGE 296
+ E
Sbjct: 308 VAE 310
>gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas
axonopodis pv. citri str. 306]
gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis
pv. citri str. 306]
Length = 934
Score = 353 bits (907), Expect = 6e-96
Identities = 214/505 (42%), Positives = 303/505 (59%), Gaps = 11/505 (2%)
Query: 382 LLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP 440
++ R ++L A DT L ++L S + + + ++A+ Y + V GKGAK+ IP
Sbjct: 433 VMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDVCGKGAKQ-IP 491
Query: 441 EKTRFLEHLAKKVKVLVDSEANIMQQLK---ANEQ--EELLFEMEQPLANVLAKMEIRGI 495
LE + D + + L A+E E + ++E PL +VLA++E G+
Sbjct: 492 FAQISLEDATRYAAEDADITLRLHRVLGPRLASEPGLERVYRDIEMPLVDVLARIEANGV 551
Query: 496 KVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTK 555
V L + K + Q+ ELAG+ FN++SPKQL LLF+ L LP + K K
Sbjct: 552 CVDAAELRRQRADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPA-VVKTPK 610
Query: 556 TGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLT 614
ST + LE +A L ILEYR +TKL+STY L + I + G++HT Y Q
Sbjct: 611 GQPSTNEEALEAIADQHELPRVILEYRGLTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGA 670
Query: 615 QTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHL 674
TGRLSSSDPNLQNIP+R E GR IR+AFV L++ DYSQIELR++AH+S D L
Sbjct: 671 ATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPPGRK-LIACDYSQIELRIMAHLSGDPGL 729
Query: 675 IAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRK 734
+ AF+ GAD+H +TA VFG + V+ ++RR AKA+NFG++YG+S FGL+ LGI R
Sbjct: 730 VGAFESGADVHRATAAEVFG-RTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRG 788
Query: 735 LAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERT 794
A+ YI YF RYPG++++MET ++A+DKGYVET+F RR L IN+ + R AER
Sbjct: 789 EAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERA 848
Query: 795 AINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTK 854
AIN+P+QG+AADI+K AM+ +D + ++KM+LQVHDE+V E + + + VT
Sbjct: 849 AINAPMQGTAADIIKRAMVKVDGWIADHAQRAKMILQVHDELVFEADIDFVDTLLSEVTT 908
Query: 855 TMESAISLSVPLIADENAGETWYEA 879
M A L VPL+ D G+ W +A
Sbjct: 909 RMAGAAELRVPLVVDSGVGDNWDQA 933
Score = 152 bits (384), Expect = 2e-35
Identities = 104/285 (36%), Positives = 149/285 (51%), Gaps = 12/285 (4%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
++L+LIDGSS +RAF AL N G T A++G ML L + +P++I
Sbjct: 2 SRLVLIDGSSYLYRAFHAL----PPLTNAQGEPTGALFGVVNMLRATL-KERPAYIAFVV 56
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR ++YADYK R PD+ R Q + + LGI ++ EADD+IGTLA
Sbjct: 57 DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
Q A + +T+ +GDKD QL + + G + A ++ K G+ P Q
Sbjct: 117 LQGAA--DGLAVTISTGDKDFAQLVRPGIELVNTMSGSRMDSD---AAVIAKFGVRPEQI 171
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
+DL ALMGD DN+PGV K G KT K L+EY SL+G+ N + +K K+ +NL +
Sbjct: 172 VDLLALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIK-GKIGDNLRAALPR 230
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQ 289
L++TL TI + G + P + +AL+ Y F Q
Sbjct: 231 LPLNRTLVTIKTDVTLASGPRALDLREP-NAEALAVLYARYGFTQ 274
>gi|22959123|ref|ZP_00006781.1| hypothetical protein [Rhodobacter
sphaeroides]
Length = 937
Score = 352 bits (902), Expect = 2e-95
Identities = 196/408 (48%), Positives = 270/408 (66%), Gaps = 14/408 (3%)
Query: 479 MEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGK 538
+E+PL VLA+ME+ G++V ++TL+ M+ + + L EI+ LAG FN+ SPKQLG+
Sbjct: 536 LERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHALAGGPFNVGSPKQLGE 595
Query: 539 LLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQ 596
+LFE +GLP +K K G + T DVLE LA L ++L++RQ++KL+STY LQ
Sbjct: 596 ILFEKMGLP--GGQKGKNGAWGTGADVLEDLAAEGHDLPARVLDWRQLSKLKSTYTDALQ 653
Query: 597 DYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
++I E G++HT Y TGRL+S+DPNLQNIPVR E+GR IR+AFV + +L+S
Sbjct: 654 EHIHPETGRVHTSYSIAGANTGRLASTDPNLQNIPVRSEEGRRIREAFV-APPGKLLVSL 712
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELR+LAHI+ L AF+EG DIH TA +F + E + P RR AKA+NFG
Sbjct: 713 DYSQIELRILAHIADIPALKQAFREGHDIHAMTASEMFNVPL-EGMDPMIRRQAKAINFG 771
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
++YGIS FGL+ NL IPR A+ +ID YFER+PGI+ YM+ + AK G+VETLF RR
Sbjct: 772 VIYGISGFGLARNLRIPRADAQGFIDRYFERFPGIRGYMDETIAFAKANGHVETLFGRRI 831
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDE 835
+ P+IN++ FA R AIN+PIQG+AAD+++ AMI + + + G + MLLQVHDE
Sbjct: 832 NTPEINAKGPGA-GFARRAAINAPIQGTAADVIRRAMIRMPKAIR--GMPATMLLQVHDE 888
Query: 836 IVLEVPNEEIGAIRELVTKTMES----AISLSVPLIADENAGETWYEA 879
++ EV E A+ E V + ME A+ L+VPL + G W A
Sbjct: 889 LLFEVEEEAADALIERVREVMEGAADPAVKLTVPLTVEAGRGLNWAAA 936
Score = 155 bits (392), Expect = 3e-36
Identities = 101/288 (35%), Positives = 146/288 (50%), Gaps = 18/288 (6%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHIL----GRVQPSHILV 62
L LIDGS+ FRA+ AL + + GL A+ GF ML + G P+H+ V
Sbjct: 9 LHLIDGSAFIFRAYHALPPLT---RKSDGLPVGAVAGFCNMLFRYVENNKGPDAPTHVAV 65
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
FD TFR E+Y YK R + P++ R QFP R+ I E E +EADDII
Sbjct: 66 IFDHSSKTFRNEIYPLYKAQRPEPPEDLRPQFPLTREATRAFNIACIETEGFEADDIIAA 125
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVV--EISKKGVAEFEEFTPAYLMEKMGIT 180
L+ +A + +T++S DKDL+QL + + K + E F EK G+
Sbjct: 126 LSCKARDAGG--SVTILSSDKDLMQLVGDGVEMLDPMKNKRIGRDEVF------EKFGVY 177
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P + +D++AL GD DN+PG IG KT L+ EYG LE + +KQ K + +
Sbjct: 178 PERVVDVQALAGDSIDNVPGAPGIGIKTAALLIQEYGDLESLLARAGEIKQPKRRAAIEE 237
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK 288
+ EQ +SK L ++ +P+T LED+ P L F + M+F+
Sbjct: 238 NAEQIRISKRLVALDCNTPLTFSLEDLEVRLPVADDLLG-FLNRMEFR 284
>gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 927
Score = 351 bits (901), Expect = 3e-95
Identities = 209/507 (41%), Positives = 306/507 (60%), Gaps = 15/507 (2%)
Query: 382 LLNRFNIDLPEPAFDTRLAKYLL-STTEDNLVSTIARLYTNLPLDTDDAVYGKGAKR--- 437
++ R I L A DT L ++L S + + + ++A+ Y + + GKGAK+
Sbjct: 426 VMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICGKGAKQIKF 485
Query: 438 ---AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKMEIR 493
++ + TR+ A+ + + + ++L A E ++ ++E PL VL ++E
Sbjct: 486 AQVSLEDATRY---AAEDADITLRLHQVLGKRLAAEPALESVYRDIEMPLVGVLERIEAN 542
Query: 494 GIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKK 553
G+ V L + + K + Q+ ELAG+ FN++SPKQL LLF+ L LP + K
Sbjct: 543 GVCVDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFDELKLPA-VVKT 601
Query: 554 TKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQD 612
K ST + LE +A L IL+YR + KL+STY L + I + G++HT Y Q
Sbjct: 602 PKGQPSTNEEALEAIADQHELPRVILDYRSLAKLRSTYTDKLPEMIHPQSGRVHTSYHQA 661
Query: 613 LTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDE 672
TGRLSSSDPNLQNIP+R E GR IR+AFV L++ DYSQIELR++AH+S D
Sbjct: 662 GAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAGRK-LIACDYSQIELRIMAHLSGDP 720
Query: 673 HLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIP 732
L+ AF+ GAD+H +TA VFG + V+ ++RR AKA+NFG++YG+S FGL+ LGI
Sbjct: 721 GLVGAFESGADVHRATAAEVFG-RTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIG 779
Query: 733 RKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAE 792
R A+ YI YF RYPG++++MET ++A+DKGYVET+F RR L IN+ + R AE
Sbjct: 780 RGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAE 839
Query: 793 RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELV 852
R AIN+P+QG+AADI+K AM+++D + ++ M+LQVHDE+V E + + + V
Sbjct: 840 RAAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEV 899
Query: 853 TKTMESAISLSVPLIADENAGETWYEA 879
T M +A SL VPL+ D G+ W EA
Sbjct: 900 TARMSAAASLRVPLVVDSGVGDNWDEA 926
Score = 150 bits (378), Expect = 1e-34
Identities = 105/292 (35%), Positives = 154/292 (51%), Gaps = 26/292 (8%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
++L+LIDGSS +RAF AL N G T A++G ML L + +P+++
Sbjct: 2 SRLVLIDGSSYLYRAFHAL----PPLTNAQGEPTGALFGVVNMLRATL-KERPAYVAFVV 56
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR ++YADYK R PD+ R Q + + LGI ++ EADD+IGTLA
Sbjct: 57 DAPGKTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLA 116
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
Q +++ +T+ +GDKD QL VE+ + A ++ K G+ P+Q
Sbjct: 117 LQ--GASDGLAVTISTGDKDFAQLVRPG--VELVNTMSGSRMDSDEA-VIAKFGVRPNQI 171
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
+DL ALMGD DN+PGV K G KT K L+EY SL+G+ N + +K K+ ENL +
Sbjct: 172 VDLLALMGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIK-GKIGENLRAALPR 230
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQ-------DIKALSQFYDEMDFKQ 289
L++ L +TI + +L SGP+ + +AL+ Y F Q
Sbjct: 231 LPLNREL--------VTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQ 274
>gi|23011486|ref|ZP_00051830.1| hypothetical protein
[Magnetospirillum magnetotacticum]
Length = 490
Score = 350 bits (898), Expect = 7e-95
Identities = 193/421 (45%), Positives = 278/421 (65%), Gaps = 11/421 (2%)
Query: 466 QLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAG 525
+L A + + +E+PL VLA+ME GI++ +N L+ ++ + +++ L +EI E AG
Sbjct: 73 RLVAERRVTVYETLERPLVPVLARMERAGIRIDRNMLSRLSGDFSQILARLEEEIQEDAG 132
Query: 526 QEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPIS-PLVTKILEYRQ 583
++F ++SPKQ+G +LF LGLP KKT +G ++T +LE LA L KIL +RQ
Sbjct: 133 EKFQVSSPKQIGDVLFGKLGLP--GAKKTPSGQWATPATLLEELAQAGHELPKKILNWRQ 190
Query: 584 ITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKA 642
+ KL+STY LQ++ E ++HT + T TGRLSSS+PNLQNIP+R E+GR IR+A
Sbjct: 191 LAKLKSTYTDSLQEHADRETNRVHTSFSLAATTTGRLSSSEPNLQNIPIRTEEGRRIRRA 250
Query: 643 FVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVT 702
FV E L+S+DYSQIELR+LAHI+ L AF++G DIH +TA +FG+ + +T
Sbjct: 251 FVAPEGKK-LISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPL-DQMT 308
Query: 703 PNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAK 762
+ RR AK +NFGI+YGIS FGL+ LGI R+ A +I YFER+PGI++Y++T + +
Sbjct: 309 GDLRRRAKTINFGIIYGISAFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKKSCR 368
Query: 763 DKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKG 822
+KGYV TLF R P I S N + R ER AIN+PIQG+AADI++ AM ++ L+
Sbjct: 369 EKGYVTTLFGRVCHYPQIRSNNPSERASVERQAINAPIQGTAADIIRRAMTRMEAALEAK 428
Query: 823 GYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMES----AISLSVPLIADENAGETWYE 878
++MLLQVHDE+V EVP++E+ A ++ + ME A++LSVPL+ + A W E
Sbjct: 429 RLTARMLLQVHDELVFEVPDDEVEATIPVIAEVMEQAPAPALTLSVPLVVEARAAGNWEE 488
Query: 879 A 879
A
Sbjct: 489 A 489
>gi|22970517|ref|ZP_00017587.1| hypothetical protein [Chloroflexus
aurantiacus]
Length = 564
Score = 350 bits (897), Expect = 9e-95
Identities = 213/495 (43%), Positives = 299/495 (60%), Gaps = 14/495 (2%)
Query: 394 AFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGKGAKR----AIPEKTRFLEHL 449
AFDT +A +L + L P T + + G+G K+ +P +
Sbjct: 67 AFDTMIAAAMLGKRQGLKDLAFYELKLPEPPTTIEDLIGRGNKQISFAEVPVEQAAPYAA 126
Query: 450 AKKVKVLVDSEANIMQQLKANEQ-EELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIE 508
A + L +E + +QL+A +L + +E PL VL ME+ GI++ + L E+
Sbjct: 127 ADALYTLRLTE-RLQRQLEAEPALHDLYYRVELPLIEVLTDMELTGIRLDQEYLRELGRH 185
Query: 509 NQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVE---MTKKTKTGYSTAVDVL 565
+ I L + IY+ AG FNINS +QL +LF LG+ ++K GYS +VL
Sbjct: 186 FAQRIADLVERIYQQAGGPFNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVL 245
Query: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624
E L+ + P+ IL YRQ+TKL+STYI L D + G+IHT Y Q TGRLSS++P
Sbjct: 246 EELSQLYPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAATGRLSSNNP 305
Query: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684
NLQNIPVR E+GR IR+AFV +E +++DYSQIELRVLAH+S DE+LIAAF++G DI
Sbjct: 306 NLQNIPVRTEEGREIRRAFV-AEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDI 364
Query: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744
H +TA R+FG+E P V N RR AK V FG++YGIS FGL+ LGI R LA+Q ID F
Sbjct: 365 HAATASRLFGVE-PTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLF 423
Query: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804
++PGI+ Y++ + + GYV+TLF RRR + D+ + R AER AIN+PIQG+A
Sbjct: 424 AQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDL-RASGARRAAAEREAINAPIQGTA 482
Query: 805 ADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAI-SLS 863
AD++K+AM+N+ R L + G ++++LLQVHDE++ E P +E+ L+ M S L
Sbjct: 483 ADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDEVEPAARLLRDVMSSVYRDLV 542
Query: 864 VPLIADENAGETWYE 878
VPL + G W E
Sbjct: 543 VPLSVNLEVGPNWDE 557
>gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium
dichloromethanicum]
Length = 1052
Score = 349 bits (896), Expect = 1e-94
Identities = 211/509 (41%), Positives = 309/509 (60%), Gaps = 16/509 (3%)
Query: 382 LLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP 440
+L+R+ ID+ P DT L Y+L + + + +AR + T V G G +
Sbjct: 548 VLHRYGIDV-TPFDDTMLISYVLDAGKGGHGMDELARRHLGHQPITFADVAGTGRNKVTF 606
Query: 441 EKT---RFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKV 497
++ + + A+ V + + +L A + + +E+PL VLA+ME GI +
Sbjct: 607 DRVAIDKATAYAAEDADVTLRLWRMMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAI 666
Query: 498 KKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG 557
+N L+ ++ + +++ L +EI E AG+ F ++SPKQ+G +LF +GLP KKT +G
Sbjct: 667 DRNMLSRLSGDFSQILARLEEEIQEDAGERFQVSSPKQIGDVLFGKMGLP--GAKKTPSG 724
Query: 558 -YSTAVDVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYILE-DGKIHTRYVQDLT 614
++T +LE LA L KIL YRQ++KL+STY LQ + ++HT + T
Sbjct: 725 QWATPATLLEELAQAGHDLPKKILNYRQLSKLKSTYTDSLQQHADRGTNRVHTSFALAAT 784
Query: 615 QTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHL 674
TGRLSSSDPNLQNIP+R E+GR IR+AFV E L+S+DYSQIELR+LAHI+ L
Sbjct: 785 TTGRLSSSDPNLQNIPIRTEEGRRIRRAFVAPEGKK-LISADYSQIELRLLAHIADIPQL 843
Query: 675 IAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRK 734
AF++G DIH +TA +FG+ + +T + RR AK +NFGI+YGIS FGL+ LGI R+
Sbjct: 844 REAFEQGIDIHAATASAMFGVAL-DQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGRE 902
Query: 735 LAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERT 794
A +I YFER+PGI++Y++T R ++KGYV TLF R P I S N + R ER
Sbjct: 903 EASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQ 962
Query: 795 AINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTK 854
AIN+PIQG+AADI++ AM ++ L+ ++MLLQVHDE+V EVP++E+ A ++
Sbjct: 963 AINAPIQGTAADIIRRAMTRMEDALEAKRLTARMLLQVHDELVFEVPDDEVEATIPVIAG 1022
Query: 855 TMES----AISLSVPLIADENAGETWYEA 879
ME A++L VPL+ + A W EA
Sbjct: 1023 VMEEAPAPALTLRVPLVVEARAAGNWEEA 1051
Score = 175 bits (443), Expect = 4e-42
Identities = 105/296 (35%), Positives = 160/296 (53%), Gaps = 16/296 (5%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRF--KNNSGLHTNAIYGFHLMLNHILGR----VQPS 58
++++L+DGSS FRA+F NQ ++ + + GL T A+ F + L V+P+
Sbjct: 22 DRVILVDGSSFIFRAYFQSINQDQKYNTRPSDGLPTGAVRLFCTKIAQFLQEGAAGVKPT 81
Query: 59 HILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADD 118
H+ + FD + +FR E++ DYKG R PD+ + Q P +R + G+ EL YEADD
Sbjct: 82 HLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELVRYEADD 141
Query: 119 IIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTP-------A 171
+I T A+QAEA ++ +VS DKDL+QL + G + P A
Sbjct: 142 LIATYARQAEARGA--EVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNLDREA 199
Query: 172 YLMEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQ 231
+ + G+ P Q D AL+GD SDN+PGV IG KT L+ EYGSLE + E +KQ
Sbjct: 200 IIAKWEGLAPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLEQLLERASEIKQ 259
Query: 232 SKMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
K +E L+ + +QA LS+ L + + P+ + L+++ P D + L F M+F
Sbjct: 260 PKRREMLLANIDQAKLSRRLVALEESVPVPVPLDELGVPQP-DPQKLVGFLKAMEF 314
>gi|6015002|sp|O08307|DPO1_CHLAU DNA polymerase I (POL I)
gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I
[Chloroflexus aurantiacus]
Length = 942
Score = 347 bits (891), Expect = 4e-94
Identities = 213/495 (43%), Positives = 299/495 (60%), Gaps = 14/495 (2%)
Query: 394 AFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAVYGKGAKR----AIPEKTRFLEHL 449
AFDT +A +L + L P T + + G+G K+ +P +
Sbjct: 445 AFDTMIAAAMLGKRQGLKDLAFYELKLPEPPTTIEDLIGRGNKQISFAEVPVEQAAPYAA 504
Query: 450 AKKVKVLVDSEANIMQQLKANEQ-EELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIE 508
A + L +E + +QL+A +L + +E PL VL ME+ GI++ + L E+
Sbjct: 505 ADALYTLRLTE-RLQRQLEAEPALHDLYYRVELPLIEVLTDMELTGIRLDQEYLRELGRH 563
Query: 509 NQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVE---MTKKTKTGYSTAVDVL 565
+ I L + IY+ AG FNINS +QL +LF LG+ ++K GYS +VL
Sbjct: 564 FAQRIADLVERIYQQAGGPFNINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVL 623
Query: 566 ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDP 624
E L+ + P+ IL YRQ+TKL+STYI L D + G+IHT Y Q TGRLSS++P
Sbjct: 624 EELSQLYPIAADILTYRQLTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAATGRLSSNNP 683
Query: 625 NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684
NLQNIPVR E+GR IR+AFV +E +++DYSQIELRVLAH+S DE+LIAAF++G DI
Sbjct: 684 NLQNIPVRTEEGREIRRAFV-AEPGWRFVAADYSQIELRVLAHMSGDENLIAAFQQGLDI 742
Query: 685 HTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYF 744
H +TA R+FG+E P V N RR AK V FG++YGIS FGL+ LGI R LA+Q ID F
Sbjct: 743 HAATASRLFGVE-PTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIERDLARQLIDNLF 801
Query: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804
++PGI+ Y++ + + GYV+TLF RRR + D+ + R AER AIN+PIQG+A
Sbjct: 802 AQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDL-RASGARRAAAEREAINAPIQGTA 860
Query: 805 ADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAI-SLS 863
AD++K+AM+N+ R L + G ++++LLQVHDE++ E P +E+ L+ M S L
Sbjct: 861 ADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDEVEPAARLLRDVMSSVYRDLV 920
Query: 864 VPLIADENAGETWYE 878
VPL + G W E
Sbjct: 921 VPLSVNLEVGPNWDE 935
Score = 175 bits (443), Expect = 4e-42
Identities = 111/288 (38%), Positives = 164/288 (56%), Gaps = 18/288 (6%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DG ++A+RAFFAL +++ G T A++GF +L L +P + VAFD
Sbjct: 6 LVLVDGHALAYRAFFALRES--GLRSSRGEPTYAVFGFAQILLTALAEYRPDYAAVAFDV 63
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
G+ TFR ++YA+YK GRA+TP+EF QF I+Q + L I Y E YEADD+IGTLA+Q
Sbjct: 64 GR-TFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALNIPIYTAEGYEADDVIGTLARQ 122
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEIS-----KKGVA--EFEEFTPAYLMEKMGI 179
A+ D +++GD D++QL + + V ++ K V + E+ Y G+
Sbjct: 123 --ATERGVDTIILTGDSDVLQLVNDHVRVALANPYGGKTSVTLYDLEQVRKRY----DGL 176
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
P Q DL+ L GD SDNIPGV IGEK + LL ++ SL+ + E I+A + + + L
Sbjct: 177 EPDQLADLRGLKGDTSDNIPGVRGIGEKGAIALLKQFRSLDALLEQIDAAPK-RYQTLLR 235
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
E A S+ LATI P+ + LE G D A+ + E++F
Sbjct: 236 EQAEAARFSRQLATIVTDVPVQLDLEAARI-GVYDRSAVMALFQELEF 282
>gi|22997220|ref|ZP_00041455.1| hypothetical protein [Xylella
fastidiosa Ann-1]
Length = 923
Score = 344 bits (883), Expect = 3e-93
Identities = 206/509 (40%), Positives = 302/509 (58%), Gaps = 17/509 (3%)
Query: 382 LLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTIARLYTNLPLDTDDAVYGKGAKR--- 437
+L R+ I L A DT L ++L++ + + T+AR + + GKGAK+
Sbjct: 420 VLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPF 479
Query: 438 ---AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKMEIR 493
+ E T++ A+ + + + +L A + E ++ E+E PL VL ++E
Sbjct: 480 SHVGVQEATQY---AAEDADITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEAN 536
Query: 494 GIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKK 553
G+++ L + + + + + Q+ +LAG+ FN++SPKQL LLF+ L LPV + K
Sbjct: 537 GVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPV-VVKT 595
Query: 554 TKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQD 612
K ST + LE + L ILEYR + KL++TY L + I G++HT Y Q
Sbjct: 596 PKGQPSTNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQA 655
Query: 613 LTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDE 672
TGRLSSSDPNLQNIP+R + GR IR+AFV L++ DYSQIELR++AH+S D
Sbjct: 656 GAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRK-LIACDYSQIELRIMAHLSGDA 714
Query: 673 HLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIP 732
L+ AF+ G D+H + A VFG + VTPN+RR AKA+NFG++YG+S FGL+ LGI
Sbjct: 715 GLVDAFESGVDVHCAIAAEVFG-RGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGIS 773
Query: 733 RKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAE 792
R A+ YI YF+R+ G++++ME ++A+D+GYVET+F RR L I S N R AE
Sbjct: 774 RGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAE 833
Query: 793 RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSK--MLLQVHDEIVLEVPNEEIGAIRE 850
R AIN+P+QG+AADI+K AM+ +D L GG++ + M+LQVHDE+V E + +
Sbjct: 834 RAAINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVH 893
Query: 851 LVTKTMESAISLSVPLIADENAGETWYEA 879
V+ M +A L VPL+ D G W EA
Sbjct: 894 EVSARMAAAAQLRVPLVVDVGVGHHWDEA 922
Score = 139 bits (350), Expect = 2e-31
Identities = 105/292 (35%), Positives = 146/292 (49%), Gaps = 26/292 (8%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
+KL+LIDGSS +RAF AL N +G T A++G ML L + +P +
Sbjct: 2 SKLVLIDGSSYLYRAFHAL----PPLSNAAGEPTGALFGVVNMLRTTL-KERPDYAAFVI 56
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR + +YK R PD+ R Q + + LGI ++ EADD+IGTLA
Sbjct: 57 DAPGKTFRDALDCEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIDGVEADDVIGTLA 116
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
A A + +T+ +GDKD QL VE+ + A ++ K G+ P Q
Sbjct: 117 LAAVA--DGIAVTISTGDKDFAQLVRPG--VELVNTMTGSRMDSAMA-VINKFGVAPDQI 171
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
ID ALMGD DN+PGV K G KT K L+EYGSL+ + N + +K K+ +NL +
Sbjct: 172 IDFLALMGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIK-GKIGDNLRIVLPR 230
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDI-------KALSQFYDEMDFKQ 289
L++ L ITI + +L PQD+ +AL FY F Q
Sbjct: 231 LLLNRAL--------ITIKTDVVLEKRPQDLALRERDTEALRDFYRRYGFTQ 274
>gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa
Temecula1]
gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa
Temecula1]
Length = 923
Score = 342 bits (878), Expect = 1e-92
Identities = 206/509 (40%), Positives = 302/509 (58%), Gaps = 17/509 (3%)
Query: 382 LLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTIARLYTNLPLDTDDAVYGKGAKR--- 437
+L R+ I L A DT L ++L++ + + T+AR + + GKGAK+
Sbjct: 420 VLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPF 479
Query: 438 ---AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKMEIR 493
+ E T++ A+ + + + +L A + E ++ E+E PL VL ++E
Sbjct: 480 SHVGVQEATQY---AAEDADITLRLHCVLAPKLLAEPRLERVYREIEMPLVAVLERIEAN 536
Query: 494 GIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKK 553
G+++ L + + + + + Q+ +LAG+ FN++SPKQL LLF+ L LPV + K
Sbjct: 537 GVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPV-VVKT 595
Query: 554 TKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQD 612
K ST + LE + L ILEYR + KL++TY L + I G++HT Y Q
Sbjct: 596 PKGQPSTNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQA 655
Query: 613 LTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDE 672
TGRLSSSDPNLQNIP+R + GR IR+AFV L++ DYSQIELR++AH+S D
Sbjct: 656 GAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRK-LIACDYSQIELRIMAHLSGDA 714
Query: 673 HLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIP 732
L+ AF+ G D+H + A VFG + VTPN+RR AKA+NFG++YG+S FGL+ LGI
Sbjct: 715 GLVDAFESGVDVHCAIAAEVFG-RGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGIS 773
Query: 733 RKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAE 792
R A+ YI YF+R+ G++++ME ++A+D+GYVET+F RR L I S N R AE
Sbjct: 774 RGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAE 833
Query: 793 RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSK--MLLQVHDEIVLEVPNEEIGAIRE 850
R AIN+P+QG+AADI+K AM+ +D L GG++ + M+LQVHDE+V E + +
Sbjct: 834 RAAINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVH 893
Query: 851 LVTKTMESAISLSVPLIADENAGETWYEA 879
V+ M +A L VPL+ D G W EA
Sbjct: 894 EVSARMAAAAQLRVPLVVDVGVGHHWDEA 922
Score = 142 bits (357), Expect = 4e-32
Identities = 106/292 (36%), Positives = 148/292 (50%), Gaps = 26/292 (8%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
+KL+LIDGSS +RAF AL N +G T A++G ML L + +P +
Sbjct: 2 SKLVLIDGSSYLYRAFHAL----PPLSNAAGEPTGALFGVVNMLRTTL-KERPDYAAFVI 56
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR + ++YK R PD+ R Q +R + LGI ++ EADD+IGTLA
Sbjct: 57 DAPGKTFRDALDSEYKMHRPPMPDDLRMQVEPMRGIVHALGIDILCIDGVEADDVIGTLA 116
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
A A + +T+ +GDKD QL VE+ + A ++ K G+ P Q
Sbjct: 117 LAAVA--DGIAVTISTGDKDFAQLVRPG--VELVNTMTGSRMDSAMA-VINKFGVAPDQI 171
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
ID ALMGD DN+PGV K G KT K L+EYGSL+ + N + +K K+ +NL +
Sbjct: 172 IDFLALMGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIK-GKIGDNLRVVLPR 230
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDI-------KALSQFYDEMDFKQ 289
L++ L ITI + +L PQD+ +AL FY F Q
Sbjct: 231 LLLNRAL--------ITIKTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQ 274
>gi|22995303|ref|ZP_00039782.1| hypothetical protein [Xylella
fastidiosa Dixon]
Length = 923
Score = 342 bits (876), Expect = 2e-92
Identities = 206/509 (40%), Positives = 301/509 (58%), Gaps = 17/509 (3%)
Query: 382 LLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTIARLYTNLPLDTDDAVYGKGAKR--- 437
+L R+ I L A DT L ++L++ + + T+AR + + GKGAK+
Sbjct: 420 VLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPF 479
Query: 438 ---AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKMEIR 493
+ E T++ A+ + + + +L A E ++ E+E PL VL ++E
Sbjct: 480 SHVGVQEATQY---AAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEAN 536
Query: 494 GIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKK 553
G+++ L + + + + + Q+ +LAG+ FN++SPKQL LLF+ L LPV + K
Sbjct: 537 GVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPV-VVKT 595
Query: 554 TKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQD 612
K ST + LE + L ILEYR + KL++TY L + I G++HT Y Q
Sbjct: 596 PKGQPSTNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQA 655
Query: 613 LTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDE 672
TGRLSSSDPNLQNIP+R + GR IR+AFV L++ DYSQIELR++AH+S D
Sbjct: 656 GAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRK-LIACDYSQIELRIMAHLSGDA 714
Query: 673 HLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIP 732
L+ AF+ G D+H + A VFG + VTPN+RR AKA+NFG++YG+S FGL+ LGI
Sbjct: 715 GLVDAFESGVDVHCAIAAEVFG-RGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGIS 773
Query: 733 RKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAE 792
R A+ YI YF+R+ G++++ME ++A+D+GYVET+F RR L I S N R AE
Sbjct: 774 RGEAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAE 833
Query: 793 RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSK--MLLQVHDEIVLEVPNEEIGAIRE 850
R AIN+P+QG+AADI+K AM+ +D L GG++ + M+LQVHDE+V E + +
Sbjct: 834 RAAINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVH 893
Query: 851 LVTKTMESAISLSVPLIADENAGETWYEA 879
V+ M +A L VPL+ D G W EA
Sbjct: 894 EVSARMAAAAQLRVPLVVDVGVGHHWDEA 922
Score = 137 bits (346), Expect = 6e-31
Identities = 105/292 (35%), Positives = 146/292 (49%), Gaps = 26/292 (8%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
+KL+LIDGSS +RAF AL N +G T A++G ML L + +P +
Sbjct: 2 SKLVLIDGSSYLYRAFHAL----PPLSNAAGEPTGALFGVVNMLRTTL-KERPDYAAFVI 56
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR + ++YK R PD+ R Q + + LGI + EADD+IGTLA
Sbjct: 57 DAPGKTFRDALDSEYKMHRPPMPDDLRMQVEPMCGIVHALGIDILCIHGVEADDVIGTLA 116
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
A A + +T+ +GDKD QL VE+ + A ++ K G+ P Q
Sbjct: 117 LAAVA--DGIAVTISTGDKDFAQLVRPG--VELVNTMTGSRMDSAMA-VINKFGVAPDQI 171
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
ID ALMGD DN+PGV K G KT K L+EYGSL+ + N + +K K+ +NL +
Sbjct: 172 IDFLALMGDSVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIK-GKIGDNLRVVLPR 230
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDI-------KALSQFYDEMDFKQ 289
L++ L ITI + +L PQD+ +AL FY F Q
Sbjct: 231 LLLNRAL--------ITIKTDVVLEKRPQDLALRERDTEALRDFYQRYGFTQ 274
>gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa
9a5c]
gi|11261555|pir||G82722 DNA polymerase I XF1103 [imported] -
Xylella fastidiosa (strain 9a5c)
gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella
fastidiosa 9a5c]
Length = 923
Score = 342 bits (876), Expect = 2e-92
Identities = 206/509 (40%), Positives = 300/509 (58%), Gaps = 17/509 (3%)
Query: 382 LLNRFNIDLPEPAFDTRLAKYLLSTTE-DNLVSTIARLYTNLPLDTDDAVYGKGAKR--- 437
+L R+ I L A DT L ++L++ + + T+AR + + GKGAK+
Sbjct: 420 VLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDLVGKGAKQIPF 479
Query: 438 ---AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKMEIR 493
+ E TR+ A+ + + + +L A E ++ E+E PL VL ++E
Sbjct: 480 SHVGVQEATRY---AAEDADITLRLHCVLAPKLLAEPSLERVYREIEMPLVAVLERIEAN 536
Query: 494 GIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKK 553
G+++ L + + + + + Q+ +LAG+ FN++SPKQL LLF+ L LPV + K
Sbjct: 537 GVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKLPV-VVKT 595
Query: 554 TKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQD 612
K ST + LE + L ILEYR + KL++TY L + I G++HT Y Q
Sbjct: 596 PKGQPSTNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQA 655
Query: 613 LTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDE 672
TGRLSSSDPNLQNIP+R + GR IR+AFV L++ DYSQIELR++AH+S D
Sbjct: 656 GAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRK-LIACDYSQIELRIMAHLSGDA 714
Query: 673 HLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIP 732
L+ AF+ G D+H + A VFG + VT N+RR AKA+NFG++YG+S FGL+ LGI
Sbjct: 715 GLVDAFESGVDVHCAIAAEVFG-RGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGIS 773
Query: 733 RKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAE 792
R A+ YI YF+R+ G++++ME ++A+D+GYVET+F RR L I S N R AE
Sbjct: 774 RGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAE 833
Query: 793 RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSK--MLLQVHDEIVLEVPNEEIGAIRE 850
R AIN+P+QG+AADI+K AM+ +D L GG++ + M+LQVHDE+V E + +
Sbjct: 834 RAAINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVH 893
Query: 851 LVTKTMESAISLSVPLIADENAGETWYEA 879
V+ M +A L VPL+ D G W EA
Sbjct: 894 EVSARMAAAAQLRVPLVVDVGVGHHWDEA 922
Score = 138 bits (348), Expect = 4e-31
Identities = 105/292 (35%), Positives = 147/292 (49%), Gaps = 26/292 (8%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
+KL+LIDGSS +RAF AL N +G T A++G ML L + +P +
Sbjct: 2 SKLVLIDGSSYLYRAFHAL----PPLSNAAGEPTGALFGVVNMLRTTL-KERPDYAAFVI 56
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
DA TFR + ++YK R PD+ R Q + + LGI ++ EADD+IGTLA
Sbjct: 57 DAPGKTFRDALDSEYKMHRPPMPDDLRVQVEPMCGIVQALGIDILCIDGVEADDVIGTLA 116
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
A A + +T+ +GDKD QL VE+ + A ++ K G+ P Q
Sbjct: 117 LAAVA--DGIAVTISTGDKDFAQLVRPG--VELVNTMTGSRMDSAMA-VINKFGVAPDQI 171
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
ID ALMGD DN+PGV K G KT K L+EYGSL+ + N + +K K+ +NL +
Sbjct: 172 IDFLALMGDAVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIK-GKIGDNLRVVLPR 230
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDI-------KALSQFYDEMDFKQ 289
L++ L ITI + +L PQD+ +AL FY F Q
Sbjct: 231 LLLNRAL--------ITIKTDVVLEKCPQDLALRERDTEALRGFYQRYGFTQ 274
>gi|22961886|ref|ZP_00009492.1| hypothetical protein [Rhodopseudomonas
palustris]
Length = 1025
Score = 340 bits (871), Expect = 9e-92
Identities = 197/444 (44%), Positives = 279/444 (62%), Gaps = 13/444 (2%)
Query: 444 RFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLN 503
R + A++ V + + +L A + +E+PL VLA+ME RGI + + L+
Sbjct: 586 RATAYAAERADVSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLS 645
Query: 504 EMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAV 562
++ + + + EI ELAG++ NI SPKQLG +LF +GLP KTKTG +ST+
Sbjct: 646 RLSADFAQTAARIEAEIRELAGEDINIGSPKQLGDILFGKMGLP--GGSKTKTGAWSTSA 703
Query: 563 DVLERLAPIS-PLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLS 620
VL+ LA KIL++RQ++KL+STY L +Y+ + ++HT Y T TGRLS
Sbjct: 704 QVLDELAEQGHEFPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLS 763
Query: 621 SSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKE 680
S++PNLQNIPVR E GR IR+AFV + N L+S+DYSQIELR+L+ ++ L AF++
Sbjct: 764 SNEPNLQNIPVRTEDGRKIRRAFVATPGNK-LVSADYSQIELRLLSEVADVPALRKAFQD 822
Query: 681 GADIHTSTAMRVFGIEKPENVTPND-RRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQY 739
G DIH TA +FG+ P P++ RR AKA+NFGI+YGIS FGL++ L IPR+ A Y
Sbjct: 823 GIDIHAMTASEMFGV--PVEGMPSEIRRRAKAINFGIIYGISAFGLANQLSIPREEAGAY 880
Query: 740 IDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSP 799
I YFER+PGI+ YM+ ++ GYV TLF R+ PDI + N +IR F ER AIN+
Sbjct: 881 IKRYFERFPGIRAYMDETRDFCRNHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINAR 940
Query: 800 IQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMES- 858
+QGSAADI++ AM+ ++ L + ++MLLQVHDE++ EVP E+ A +V M+
Sbjct: 941 LQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLPVVRAVMQDA 1000
Query: 859 ---AISLSVPLIADENAGETWYEA 879
A+ L+VPL D A + W EA
Sbjct: 1001 PFPAVILNVPLQVDARAADNWDEA 1024
Score = 158 bits (399), Expect = 5e-37
Identities = 100/289 (34%), Positives = 156/289 (53%), Gaps = 22/289 (7%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRV----QPSHILV 62
+ L+DGSS FRA+ AL ++R + GL NA+ GF ML +L + +P+H+ +
Sbjct: 34 IFLVDGSSYIFRAYHAL-PPLNR--KSDGLQVNAVLGFCNMLWKLLRDMPPENRPTHLAI 90
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
FD + TFR +Y +YK R P++ QF IR+ + + E +EADD+I T
Sbjct: 91 IFDKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIAT 150
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKK----GVAEFEEFTPAYLMEKMG 178
+ EA T+VS DKDL+QL V+ + K GV E ++EK G
Sbjct: 151 YVR--EACEAGATATIVSSDKDLMQLVTDCVVMYDTMKDRRIGVPE--------VIEKFG 200
Query: 179 ITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENL 238
+ P++ ++++AL GD DN+PGV IG KT +L++EYG LE + +KQ K +E L
Sbjct: 201 VPPNKVVEVQALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREAL 260
Query: 239 INDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
I + E+A +S+ L ++ + + LE++ P D + L F M+F
Sbjct: 261 IENAEKARISRKLVLLDDHVQLEVPLEELAVHEP-DARKLVAFLKAMEF 308
>gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter
crescentus CB15]
gi|25288525|pir||F87678 DNA polymerase I [imported] - Caulobacter
crescentus
gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus
CB15]
Length = 967
Score = 339 bits (869), Expect = 1e-91
Identities = 198/449 (44%), Positives = 272/449 (60%), Gaps = 15/449 (3%)
Query: 438 AIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKV 497
A+PE T + A+ V + ++ QL + +E+P+ VLA ME G++V
Sbjct: 526 ALPEATAY---AAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRV 582
Query: 498 KKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG 557
L ++ E + EL G+ FN+ SPKQ+G +LF + + + KKT TG
Sbjct: 583 DPEALRLLSNEFSLRMAQFEARAQELVGRPFNLGSPKQIGDVLFGEMQM--KGGKKTATG 640
Query: 558 -YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQ 615
+ST DVLE LA L +L++RQ++KL+ TY L I G++HT Y T
Sbjct: 641 QWSTDSDVLESLALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYALAATT 700
Query: 616 TGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLI 675
TGRLSSSDPNLQNIPVR E+GR IRKAFV + + VL+S+DYSQIELR+LAHI L
Sbjct: 701 TGRLSSSDPNLQNIPVRTEEGRKIRKAFVAAPGH-VLISADYSQIELRLLAHIGDIPQLK 759
Query: 676 AAFKEGADIHTSTAMRVFGIEKP-ENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRK 734
AF+EG DIH TA +F + P E + P RR AKA+NFGIVYGIS FGL++ LGI +
Sbjct: 760 KAFQEGLDIHAMTASEMF--DTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGISQG 817
Query: 735 LAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERT 794
A YI TYFER+PGI+ YM+ ++ GYV T+F R+ ++PDI +++ RQFAER
Sbjct: 818 EAGAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAKSAAHRQFAERA 877
Query: 795 AINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVL----EVPNEEIGAIRE 850
AIN+PIQG+AAD+++ AMI + L+ G ++MLLQVHDE+V +R
Sbjct: 878 AINAPIQGAAADVMRRAMIRMPVALEAAGLSTRMLLQVHDELVFEAPEAEAERACAVVRA 937
Query: 851 LVTKTMESAISLSVPLIADENAGETWYEA 879
++ K E A++LS+PL + A W EA
Sbjct: 938 VMEKAAEPAVALSIPLTVEARAASNWDEA 966
Score = 164 bits (415), Expect = 7e-39
Identities = 101/294 (34%), Positives = 157/294 (53%), Gaps = 13/294 (4%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ---PSHILV 62
+L L+DGS+ FRA+ AL + + GL A+ GF ML +L +Q P+H+ V
Sbjct: 27 RLFLVDGSAYLFRAYHALPPLT---RKSDGLPVGAVQGFCNMLWKLLRDMQGDTPTHLAV 83
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
+D + TFR +Y YK R P++ QFP +R+ G+ EL YEADD+I
Sbjct: 84 IWDHSEKTFRNALYDQYKAHRPPPPEDLIPQFPLVREATLAFGVPAIELPGYEADDLIAA 143
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A +A + + +VS DKDL+QL + KGV E + EK G+ P
Sbjct: 144 YA--CKARDIGGEAIIVSSDKDLMQLVGDGVSMYDPMKGVRIERE----QVFEKFGVYPE 197
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
+ +D++AL GD DN+PG IG KT +L++EYG L+ + +KQ K +E LIN
Sbjct: 198 KVVDVQALCGDSVDNVPGAPGIGIKTAAQLITEYGDLDTLLARAGEIKQPKRRETLINFA 257
Query: 243 EQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296
+Q LS+ L ++ +P+ L+ + P D +AL+ F ++M+F+ +G+
Sbjct: 258 DQIRLSRALVKLDCDTPLPQPLDALTVREP-DKEALAAFLEQMEFRSLARRVGD 310
>gi|23133301|ref|ZP_00115075.1| hypothetical protein [Synechococcus
sp. WH 8102]
Length = 981
Score = 338 bits (866), Expect = 3e-91
Identities = 207/529 (39%), Positives = 308/529 (58%), Gaps = 33/529 (6%)
Query: 377 KRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIA-RLYTNLPLDTDDAVYGKGA 435
K +++L R + L DT LA YL + + +A R + P D V K
Sbjct: 461 KFDRLILMRHGLALDGVVIDTLLADYLRDAAAKHGLELMAEREFGFQPTAYSDLVGKKQT 520
Query: 436 KRAIP-----EKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKM 490
+P + H+ +++ +L+ ++ M + LL ++EQPL VLA+M
Sbjct: 521 FADVPLEAASQYCAMDVHVTRRLALLLRNQLAAM----GAQVLTLLEQVEQPLEPVLAEM 576
Query: 491 EIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEM 550
E GI++ L E++ E +E L E E AG +FN+ SPKQLG+LLF+TLGL +
Sbjct: 577 EATGIRIDVPYLQELSTEMGTTLERLETEAKEAAGVDFNLASPKQLGELLFDTLGLDRKK 636
Query: 551 TKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRY 609
+++TKTGYST VLE+L P+V +LE+R ++KL+STYI L + E G++HT +
Sbjct: 637 SRRTKTGYSTDATVLEKLGDDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDF 696
Query: 610 VQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHIS 669
Q +T TGRLSSS+PNLQNIPVR E R IRKAF+P + LLS+DYSQIELR+L H+S
Sbjct: 697 NQAVTATGRLSSSNPNLQNIPVRTEYSRRIRKAFLP-QAGWTLLSADYSQIELRILTHLS 755
Query: 670 KDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729
+E L A++ G D+H TA + ++K E V+ ++RR K +NFG++YG+ +
Sbjct: 756 GEEVLQEAYRSGDDVHALTARLL--LDKDE-VSADERRLGKTINFGVIYGMGAQRFARET 812
Query: 730 GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLP----------- 778
G+ + AK ++ Y +RYP + ++E R A +GYVET+ RRR
Sbjct: 813 GVSQSEAKDFLSKYKQRYPKVFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLG 872
Query: 779 ------DIN-SRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQ 831
D++ +R + R A N+PIQGS+ADI+K+AM+ L L G +++LLQ
Sbjct: 873 KEPLEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKVAMVQLQAALTSQGLPARLLLQ 932
Query: 832 VHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VHDE+VLEV + + R++V +TME+A+ L+VPL+A+ G W EAK
Sbjct: 933 VHDELVLEVEPDALETTRDMVVRTMENAVKLTVPLVAETGVGANWMEAK 981
Score = 144 bits (364), Expect = 6e-33
Identities = 93/278 (33%), Positives = 150/278 (53%), Gaps = 21/278 (7%)
Query: 2 TNKNKLLLIDGSSVAFRAFFALYNQID-RFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
+ K LLL+DG S+AFR+F+A + N G T+ YGF L ++P +
Sbjct: 5 STKPLLLLVDGHSLAFRSFYAFSKGGEGGLATNDGRPTSVTYGFLKSLLDTGKSLKPEGV 64
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQL-DVLGIKHYELEHYEADDI 119
+AFD + TFR + A+YK R P+ F + +++ L L + YEADD+
Sbjct: 65 AIAFDTAEPTFRHKADANYKAHRDVAPEVFFQDLDQLQEILRHKLDLPLCMAPGYEADDV 124
Query: 120 IGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFT-PAYLME--- 175
+GTLA + A+++ + + ++SGD+DL QL D N + + G + + + P + E
Sbjct: 125 LGTLANR--AADDGWGVRILSGDRDLFQLVDDNRDIAVLYMGGGPYAKNSGPTLIREEGV 182
Query: 176 --KMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK--- 230
K+G+ P++ +DLKAL GD SDNIPGV +G KT + LL + L+ +Y +E ++
Sbjct: 183 LGKLGVMPNKVVDLKALTGDSSDNIPGVRGVGPKTAISLLKDNNDLDAVYATLEELEAEG 242
Query: 231 --------QSKMKENLINDKEQAFLSKTLATINIASPI 260
+ +K L NDK+ A+LS+ LA I + P+
Sbjct: 243 PKASRGAIKGALKGKLRNDKDNAYLSRKLAEILVDIPL 280
>gi|33240684|ref|NP_875626.1| DNA polymerase I 3'-5' exonuclease and
polymerase domains [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and
polymerase domains [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 985
Score = 338 bits (866), Expect = 4e-91
Identities = 214/530 (40%), Positives = 321/530 (60%), Gaps = 35/530 (6%)
Query: 377 KRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIA-RLYTNLPLDTDDAVYGKGA 435
K +++ I L DT LA YL ++T + + IA R Y P++ + V GKG
Sbjct: 465 KYDRLIFLHNGIPLEGVVMDTLLADYLSNSTNKHSLDEIAKREYGFTPINFKELV-GKGE 523
Query: 436 K-RAIPEKTRFLE-----HLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAK 489
+ + T + +L +K+ + S+ Q K +E +LL ++EQPL +LA+
Sbjct: 524 TFKDVDIDTASIYCGMDVYLTRKLSFRIRSQL----QTKGSELIQLLEKVEQPLEPILAE 579
Query: 490 MEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVE 549
ME RGI + L E++ E + ++ L ++ Y+ AG EFN+NSPKQLG++LF+ L L +
Sbjct: 580 MEARGICIDIPYLKELSKELNQTLKGLEEQAYKSAGFEFNLNSPKQLGEILFDKLALDKK 639
Query: 550 MTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTR 608
++KTKTG+ST +VLERL PLV ++E+R ++KL STY+ L + E G++HT
Sbjct: 640 KSRKTKTGWSTDANVLERLEADHPLVPLLVEHRTLSKLVSTYVDALPQLVEAETGRVHTD 699
Query: 609 YVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHI 668
+ Q +T TGRLSSS+PNLQNIP+R E R IRKAF+P E N L+S+DYSQIELR+LAH+
Sbjct: 700 FNQAVTATGRLSSSNPNLQNIPIRTEFSRRIRKAFLPQE-NWKLISADYSQIELRILAHL 758
Query: 669 SKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHN 728
S +E L A+K G D+HT TA + +EK E++ N+RR K +NFG++YG+ + +
Sbjct: 759 SGEEILQEAYKNGDDVHTLTAKIL--LEK-ESINSNERRLGKTINFGVIYGMGAQRFARS 815
Query: 729 LGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR----------SLP 778
G+ + AK +++ + ERYP + +++E R A KGYV+TL RRR L
Sbjct: 816 TGLNQSEAKDFLNRFKERYPKVFSFLELQERLALSKGYVQTLLGRRRYFNFDKNGLGRLL 875
Query: 779 DINSRNFNIRQFAE--------RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLL 830
+ N ++++ R A N+PIQGS+ADI+KIAM+ L L G + +LL
Sbjct: 876 GSDPMNIDLKRARRAGMEAQQLRAAANAPIQGSSADIIKIAMVQLATKLKVSGVAANLLL 935
Query: 831 QVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
QVHDE+VLEV I ++ +V TME+A+ L+VPL+ + G+ W +AK
Sbjct: 936 QVHDELVLEVEPSVIEEVKNIVVSTMENAVHLAVPLVVHASIGDNWMDAK 985
Score = 149 bits (377), Expect = 2e-34
Identities = 95/273 (34%), Positives = 151/273 (54%), Gaps = 21/273 (7%)
Query: 7 LLLIDGSSVAFRAFFALYNQID-RFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
LLL+DG S+AFR+F+A + + G T+ YGF L + P + +AFD
Sbjct: 10 LLLVDGHSLAFRSFYAFSKGGEGGLQTKEGTPTSVTYGFLKSLLDNCKLLSPEGVTIAFD 69
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQL-DVLGIKHYELEHYEADDIIGTLA 124
+ TFR + +YK R PD F + +++ L + L + + YEADD++GTLA
Sbjct: 70 TAEPTFRHKADPNYKANRDVAPDIFFQDLAQLQKILEESLNLPIFTAPGYEADDVLGTLA 129
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEF-EEFTPAYLME-----KMG 178
+ AS+ + + +++GD+DL QL D + + + G + + +PA++ E K+G
Sbjct: 130 NK--ASDNGWQVRILTGDRDLFQLVDDDRNIAVLYMGGGPYAKSGSPAFINEAGVKTKLG 187
Query: 179 ITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK-------- 230
+ P++ IDLKAL GD SDNIPG+ +G KT + LL E G L+GI++ ++ ++
Sbjct: 188 VIPTKVIDLKALTGDSSDNIPGIRGVGPKTAINLLKENGDLDGIFKILDYLETKGEKATQ 247
Query: 231 ---QSKMKENLINDKEQAFLSKTLATINIASPI 260
+ +KE L KE A+LS+ LA I I PI
Sbjct: 248 GVIKGALKEKLKTGKENAYLSRQLAEIMINVPI 280
>gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema
pallidum]
gi|6166143|sp|P74933|DPO1_TREPA DNA polymerase I (POL I)
gi|7434816|pir||F71365 probable DNA polymerase I (polA) - syphilis
spirochete
gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema
pallidum]
Length = 997
Score = 331 bits (848), Expect = 4e-89
Identities = 191/483 (39%), Positives = 283/483 (58%), Gaps = 5/483 (1%)
Query: 395 FDTRLAKYLLSTTEDNL-VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKV 453
FDT +A +LL + +A + + T + V KG A + + A+
Sbjct: 515 FDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDA 574
Query: 454 KVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513
+ + +L+ + +E PL +LA+ME GI ++K+ + ++ +I
Sbjct: 575 DITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLI 634
Query: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573
+ +I+ LAG EFNI SPKQL +LF+ L LP KK GYST VL++LA P
Sbjct: 635 QQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPP--GKKNTQGYSTDHSVLKKLARKHP 692
Query: 574 LVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRL 633
+ KIL +R ++KL+STY L + G++HT +VQ T TGRLSS +PNLQNIP++
Sbjct: 693 IAEKILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKS 752
Query: 634 EQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVF 693
+GR IR+AF + + L+S+DY+QIEL VLAH+S+D +L+ AF++ DIH TA +F
Sbjct: 753 TEGRKIRQAFQATVGHE-LISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIF 811
Query: 694 GIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNY 753
+ ++V P RR AK +NFGIVYG+S F LS L I +K A+ +I YFE YPG+ +
Sbjct: 812 NVSI-DDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAF 870
Query: 754 METVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMI 813
V + + GYV +L RRR + I+SRN R AER A+N+ IQ SAADI+KIAMI
Sbjct: 871 STQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMI 930
Query: 814 NLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAG 873
+ R + ++++LLQVHDE++ E P E ++E++ ME A+ LS+PL +G
Sbjct: 931 AIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVELSIPLRIHVESG 990
Query: 874 ETW 876
+W
Sbjct: 991 NSW 993
Score = 159 bits (402), Expect = 2e-37
Identities = 94/267 (35%), Positives = 147/267 (54%), Gaps = 8/267 (2%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M K L L+D + +R++ A N+SG + +A+YGF L+ +L +P +
Sbjct: 1 MQEKKTLYLLDAYGLIYRSYHAFARA--PLINDSGANVSAVYGFFRSLHTLLCHYRPRYF 58
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
+ FD+ TFR Y YK R KT E Q P I + L LGI + +EADD+I
Sbjct: 59 VAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEADDLI 118
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLT-DTNTVVEISKKGVAEFEEFTPAYLMEKMGI 179
TLAK+ A EH + ++S DKD++QL DT V+ + ++ AY+ ++ +
Sbjct: 119 ATLAKRVAA--EHCHVVIISSDKDVLQLVCDTVQVLRLDID--HKWTCCDAAYVQQRWTV 174
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
P+Q +DL +LMGD SDN+PGV IG KT LL +G+L+GIY + ++K++ ++ ++
Sbjct: 175 MPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEA-LRTKIV 233
Query: 240 NDKEQAFLSKTLATINIASPITIGLED 266
K+ AF S++L + P LED
Sbjct: 234 CGKKDAFFSRSLIELRDDVPCVFSLED 260
>gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp.
PCC 6803]
gi|6225285|sp|Q55971|DPO1_SYNY3 DNA polymerase I (POL I)
gi|7434822|pir||S77056 DNA-directed DNA polymerase (EC 2.7.7.7) I -
Synechocystis sp. (strain PCC 6803)
gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC
6803]
Length = 986
Score = 330 bits (846), Expect = 6e-89
Identities = 218/568 (38%), Positives = 322/568 (56%), Gaps = 74/568 (13%)
Query: 357 LLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIA 416
LL E L K ++ F R +L I+L DT LA Y+L E + ++ +
Sbjct: 449 LLGEILGNAIYPKVLQNAKFDRR--VLAHHGIELGGVVLDTMLASYVLQPEETHNLTDLC 506
Query: 417 RLY--------------------TNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVL 456
R Y +LPL+T G + +L LA K++
Sbjct: 507 RRYNLGLVALSYKDLGLKKDQTIADLPLET------AGQYCGLDCYATYL--LASKLQKE 558
Query: 457 VDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKN---TLNEMAIENQKVI 513
+D + E +E+L E+EQPL +LA ME RGI++ + TL++ EN I
Sbjct: 559 LD---------QYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTI 609
Query: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573
ET YE AG+ FN++SPKQLG +LF+ LGL + ++KTKTGYST LE+L P
Sbjct: 610 ETAA---YEAAGESFNLSSPKQLGTILFDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHP 666
Query: 574 LVTKILEYRQITKLQSTYIIGLQDYIL-EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVR 632
++ ILE+R + KL+STY+ L + + + +IHT + Q +T TGRLSSS+PNLQNIP+R
Sbjct: 667 IIDAILEHRTLAKLKSTYVDALPELVNGQTQRIHTDFNQAVTSTGRLSSSNPNLQNIPIR 726
Query: 633 LEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRV 692
+ R IR+AF+P +D +L+S+DYSQIELR+LAH+S++ L+ A+ + D+H TA +
Sbjct: 727 SDFSRQIRRAFLPQKD-WLLVSADYSQIELRILAHLSQEPVLLQAYGDRQDVHGVTAKLL 785
Query: 693 FGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752
FG E++TP +R K +NFG++YG+ + GI +++ID Y Y + +
Sbjct: 786 FG---KEDITPAERNLGKTINFGVIYGMGAQRFARETGISAVEGREFIDRYHRTYAQVFD 842
Query: 753 YMETVVREAKDKGYVETLFHRRR--------------------SLPDINSRNFNIRQFAE 792
Y+ET+ EA KGYV T+ RRR L D+ N+N Q
Sbjct: 843 YLETMKLEAIAKGYVTTIVGRRRYFNFVTEALRQLRGKTVTELDLVDVK-MNYNDAQLL- 900
Query: 793 RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELV 852
R+A N+PIQGS+ADI+KIAM+ L ++L+ Y+++MLLQVHDE++ E+P EE + L+
Sbjct: 901 RSAANAPIQGSSADIIKIAMVKLAKLLES--YQTRMLLQVHDELIFEMPPEEWEELAPLI 958
Query: 853 TKTMESAISLSVPLIADENAGETWYEAK 880
TME A++LSVPL+ + + G W EAK
Sbjct: 959 QNTMEQALTLSVPLVVEMHRGSNWMEAK 986
Score = 183 bits (464), Expect = 1e-44
Identities = 104/272 (38%), Positives = 166/272 (60%), Gaps = 10/272 (3%)
Query: 7 LLLIDGSSVAFRAFFAL-YNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
LLL+DG S+AFRA++A ++ + +G+ T+ +GF L ++ +P+ I +AFD
Sbjct: 10 LLLVDGHSLAFRAYYAFGLSKKGPLRTTAGIPTSVCFGFLNSLMQVMESQKPAAIAIAFD 69
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
+ TFR E YK R +TP++F E Y++Q L+ L ++ YEADDI+GTLA
Sbjct: 70 RREPTFRHEADGAYKSNRQETPEDFAEDLSYLQQLLEALNLQTITYAGYEADDILGTLAC 129
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTN---TVVEISKKGVAE---FEEFTPAYLMEKMGI 179
Q S+ + + ++SGD+DL QL +V+ +++ + ++E +++KMG+
Sbjct: 130 Q--GSDAGYQVKILSGDRDLFQLVSPEKNISVLYLTRNPFSSNTGYDELDWQGVVDKMGV 187
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
TP+Q +D KAL GDKSD IPG+ IGEKT +KLL+EY +LE +YEN+ +K + +K L
Sbjct: 188 TPAQIVDFKALCGDKSDCIPGINGIGEKTAIKLLAEYETLEKVYENLAQIKGA-LKTRLD 246
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSG 271
N K+ A S+ LA I + P+ + ED+ +G
Sbjct: 247 NGKDDAMHSQMLARIVVDVPLPVTWEDLQLTG 278
>gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease
and polymerase [Treponema pallidum]
Length = 997
Score = 329 bits (844), Expect = 1e-88
Identities = 190/483 (39%), Positives = 282/483 (58%), Gaps = 5/483 (1%)
Query: 395 FDTRLAKYLLSTTEDNL-VSTIARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKV 453
FDT +A +LL + +A + + T + V KG A + + A+
Sbjct: 515 FDTMVAAWLLDPDRGTYGMDVLAASFFQIRTITFEEVVAKGQTFAHVPYECAVRYAAEDA 574
Query: 454 KVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVI 513
+ + +L+ + +E PL +LA+ME GI ++K+ + ++ +I
Sbjct: 575 DITFRLYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLI 634
Query: 514 ETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISP 573
+ +I+ LAG EFNI SPKQL +LF+ L LP KK GYST VL++LA P
Sbjct: 635 QQYEHDIFSLAGHEFNIGSPKQLQTVLFQELHLPP--GKKNTQGYSTDHSVLKKLARKHP 692
Query: 574 LVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRL 633
+ KIL +R ++KL+STY L + G++HT +VQ T TGRLSS +PNLQNIP++
Sbjct: 693 IAEKILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIGTATGRLSSRNPNLQNIPIKS 752
Query: 634 EQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVF 693
+GR IR+AF + + L+S+DY+QIEL LAH+S+D +L+ AF++ DIH TA +F
Sbjct: 753 TEGRKIRQAFQATVGHE-LISADYTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIF 811
Query: 694 GIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNY 753
+ ++V P RR AK +NFGIVYG+S F LS L I +K A+ +I YFE YPG+ +
Sbjct: 812 NVSI-DDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQKEAQSFIYRYFETYPGVYAF 870
Query: 754 METVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMI 813
V + + GYV +L RRR + I+SRN R AER A+N+ IQ SAADI+KIAMI
Sbjct: 871 STQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMI 930
Query: 814 NLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAG 873
+ R + ++++LLQVHDE++ E P E ++E++ ME A+ LS+PL +G
Sbjct: 931 AIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFAEMEHAVELSIPLRIHVESG 990
Query: 874 ETW 876
+W
Sbjct: 991 NSW 993
Score = 159 bits (402), Expect = 2e-37
Identities = 94/267 (35%), Positives = 147/267 (54%), Gaps = 8/267 (2%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M K L L+D + +R++ A N+SG + +A+YGF L+ +L +P +
Sbjct: 1 MQEKKTLYLLDAYGLIYRSYHAFARA--PLINDSGANVSAVYGFFRSLHTLLCHYRPRYF 58
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
+ FD+ TFR Y YK R KT E Q P I + L LGI + +EADD+I
Sbjct: 59 VAVFDSLTPTFRHVQYPAYKAKRDKTSAELYAQIPLIEEILCALGITVLRHDGFEADDLI 118
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLT-DTNTVVEISKKGVAEFEEFTPAYLMEKMGI 179
TLAK+ A EH + ++S DKD++QL DT V+ + ++ AY+ ++ +
Sbjct: 119 ATLAKRVAA--EHCHVVIISSDKDVLQLVCDTVQVLRLDID--HKWTCCDAAYVQQRWTV 174
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
P+Q +DL +LMGD SDN+PGV IG KT LL +G+L+GIY + ++K++ ++ ++
Sbjct: 175 MPTQLLDLFSLMGDSSDNVPGVRGIGPKTAAHLLHCFGTLDGIYRHTYSLKEA-LRTKIV 233
Query: 240 NDKEQAFLSKTLATINIASPITIGLED 266
K+ AF S++L + P LED
Sbjct: 234 CGKKDAFFSRSLIELRDDVPCVFSLED 260
>gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium
japonicum]
gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium
japonicum USDA 110]
Length = 1023
Score = 328 bits (841), Expect = 2e-88
Identities = 191/422 (45%), Positives = 268/422 (63%), Gaps = 13/422 (3%)
Query: 466 QLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAG 525
+L A + +E+PL VLA+ME RGI + + L+ ++ + + + EI E+AG
Sbjct: 606 RLVAEHMTTVYETLERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARVEAEIQEIAG 665
Query: 526 QEFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPIS-PLVTKILEYRQ 583
+ N+ SPKQ+G +LF + LP KTKTG +ST VL+ LA L KILE+RQ
Sbjct: 666 EPVNVGSPKQIGDILFGKMSLP--GGTKTKTGAWSTTAQVLDELAEQGHDLPKKILEWRQ 723
Query: 584 ITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKA 642
++KL+STY L +Y+ + ++HT Y T TGRLSS++PNLQNIPVR E GR IR+A
Sbjct: 724 VSKLKSTYTDALPEYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTEDGRKIRRA 783
Query: 643 FVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVT 702
F+ + + L+S+DYSQIELR+LA I+ L AF++G DIH TA +FG+ P
Sbjct: 784 FIATPGHK-LVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGV--PIKGM 840
Query: 703 PND-RRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREA 761
P++ RR AKA+NFGI+YGIS FGL++ LGI R+ A YI YFER+PGI+ YM+
Sbjct: 841 PSEIRRRAKAINFGIIYGISAFGLANQLGIAREEASAYIKKYFERFPGIRAYMDETRDFC 900
Query: 762 KDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDK 821
+ GYV TLF R+ PDI + N ++R F ER AIN+ +QG+AADI++ AM ++ L +
Sbjct: 901 RQHGYVTTLFGRKCHYPDIKASNASVRAFNERAAINARLQGTAADIIRRAMTRVEDALAE 960
Query: 822 GGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMES----AISLSVPLIADENAGETWY 877
++MLLQVHDE++ EVP+ E+ A +V M+ A+ LSVPL D A + W
Sbjct: 961 KKLSAQMLLQVHDELIFEVPDAEVEATLPVVQHVMQDAPFPAVLLSVPLHVDARAAKNWD 1020
Query: 878 EA 879
EA
Sbjct: 1021 EA 1022
Score = 160 bits (406), Expect = 6e-38
Identities = 102/308 (33%), Positives = 165/308 (53%), Gaps = 22/308 (7%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRV----QPSHILV 62
+ L+DGSS FRA+ AL ++R + GL NA+ GF ML +L + +P+H+ +
Sbjct: 47 VFLVDGSSYIFRAYHAL-PPLNR--KSDGLQVNAVLGFCNMLWKLLRDMPADNRPTHLAI 103
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
FD + TFR ++Y +YK R PD+ QF IR+ + + E +EADD+I T
Sbjct: 104 VFDKSEVTFRNKIYPEYKAHRPPAPDDLIPQFALIREAVRAFDLPCLEQGGFEADDLIAT 163
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKK----GVAEFEEFTPAYLMEKMG 178
A+ EAS+ T+VS DKDL+QL + + + K G+ E ++EK G
Sbjct: 164 YAR--EASDRGATTTIVSSDKDLMQLVNDRITMYDTMKDRRIGIPE--------VIEKFG 213
Query: 179 ITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENL 238
+ P + ++++AL GD +DN+PGV IG KT +L+ +YG LE + +KQ K +E L
Sbjct: 214 VPPEKVVEVQALAGDSTDNVPGVPGIGIKTAAQLIVDYGDLEQLLFRATEIKQPKRREAL 273
Query: 239 INDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEET 298
I + E+A +S+ L ++ + + L+D+ P D + L F M+F + + +
Sbjct: 274 IENAEKARISRKLVLLDDKVELEVPLDDLAVHEP-DARKLIAFLKAMEFSTLTRRVADYS 332
Query: 299 SQEDFEVD 306
+ VD
Sbjct: 333 QIDPANVD 340
>gi|22965813|ref|ZP_00013411.1| hypothetical protein [Rhodospirillum
rubrum]
Length = 924
Score = 324 bits (831), Expect = 4e-87
Identities = 201/500 (40%), Positives = 289/500 (57%), Gaps = 15/500 (3%)
Query: 393 PAFDTRLAKYLLS-TTEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEKT---RFLEH 448
P DT + Y+L T + + +A L+ T + V GKG + ++ + + +
Sbjct: 426 PVDDTMVLSYVLDGTLHGHGMDELAGLHLGRRTITFEEVCGKGKGQITFDQVPLDKAVAY 485
Query: 449 LAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIE 508
A+ V + + +L + +++P+ +L ME G++V L ++ +
Sbjct: 486 AAEDADVTLRLYLLLRDRLLKEHMVRVHETLDRPMVRILTDMEAAGVRVDALRLKALSGD 545
Query: 509 NQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERL 568
K + L +I+ LAG FN+ SPKQLG++LFE + L + +ST VL++L
Sbjct: 546 FAKRMGDLEDQIHALAGHAFNVASPKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQL 605
Query: 569 APIS-PLVTKILEYRQITKLQSTYIIGLQDYILE-DGKIHTRYVQDLTQTGRLSSSDPNL 626
A L ++L++RQ KL+ TY L I E G++HT Y +T TGRLSS+DPNL
Sbjct: 606 AAEGHDLPARVLDWRQYAKLKGTYTDALVAEIDERTGRVHTTYGLTVTATGRLSSNDPNL 665
Query: 627 QNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHT 686
QNIPVR E GR IR+AF+ + + +L+S+DYSQIELR++AH++ L AF EG DIH
Sbjct: 666 QNIPVRSEAGRKIREAFIAAPGH-LLISADYSQIELRLVAHVAGITALRQAFAEGKDIHA 724
Query: 687 STAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFER 746
TA +VFG+ E + P RR AKA+NFGI+YGIS GL+ LG+ R A +I YF R
Sbjct: 725 ITASQVFGV-PVEGMDPMVRRQAKAINFGIIYGISAHGLAQQLGVGRPEAAAFITAYFAR 783
Query: 747 YPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAAD 806
+P I++YMETV EA+ G+V T F RR +P I +N R FAER AIN+PIQG AAD
Sbjct: 784 FPEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAARAFAERQAINAPIQGGAAD 843
Query: 807 ILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISL---- 862
I+K AMI L L++ G ++MLLQVHDE++ E P E LV + ME+A++L
Sbjct: 844 IIKRAMIALPPALEQAGLATRMLLQVHDELIFEAPEAEAETAAALVKRVMETAVTLTDDQ 903
Query: 863 ---SVPLIADENAGETWYEA 879
+VPL D +W EA
Sbjct: 904 GERTVPLEVDTGIAASWAEA 923
Score = 173 bits (439), Expect = 1e-41
Identities = 107/297 (36%), Positives = 153/297 (51%), Gaps = 21/297 (7%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT L L+DGS FRA Y+ + G NA+YGF ML +L + H+
Sbjct: 1 MTEPKHLYLVDGSGYIFRA----YHSLPPMTRTDGTPVNAVYGFTAMLMKLLADMDADHL 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD + +FR E+Y YK R P++ QFP IR+ + + E + +EADD+I
Sbjct: 57 AVIFDKARVSFRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDLI 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFT-----PAYLME 175
T AK+A A E +TVVS DKDL+QL +GVA F+ PA + E
Sbjct: 117 ATYAKRARA--EGAIVTVVSSDKDLMQLVG---------EGVALFDPMKNRAIGPAEVFE 165
Query: 176 KMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMK 235
K G+ P + ID++AL GD DN+PGV IG KT +L+ EYG LE + +KQ K +
Sbjct: 166 KFGVAPDKVIDVQALAGDAVDNVPGVPGIGVKTAAQLIGEYGDLETLLARAAEIKQPKRR 225
Query: 236 ENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKA 292
++L++ E A +S L + ++ L D + P D + L+ F E F+ A
Sbjct: 226 QSLLDHAEAARISLQLVRLRDDVEVSETLADFATAEP-DAEVLAGFLAENGFRSLLA 281
>gi|23110653|ref|ZP_00096806.1| hypothetical protein
[Novosphingobium aromaticivorans]
Length = 945
Score = 306 bits (784), Expect = 1e-81
Identities = 183/406 (45%), Positives = 250/406 (61%), Gaps = 14/406 (3%)
Query: 478 EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLG 537
++++PL V+A ME GIKV + L+ ++ E I L I+E G F I SPKQLG
Sbjct: 543 KVDRPLIPVVAMMERNGIKVDRERLSGLSTEFAAQIARLEGVIHEKCGMSFTIGSPKQLG 602
Query: 538 KLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPI-SPLVTKILEYRQITKLQSTYIIGLQ 596
++LF+ LG KT YST VLE LA + + T +LE+RQ++KL+STY LQ
Sbjct: 603 EVLFDKLGYKGGKKGKTGQ-YSTDQSVLEGLAAQGAEVATLVLEWRQLSKLKSTYTDALQ 661
Query: 597 DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSS 655
I G++HT Y QTGRLSS++PNLQNIP+R E GR IR AFV +E VLL++
Sbjct: 662 AAINPHTGRVHTSYSLVGAQTGRLSSNEPNLQNIPIRTEIGRQIRDAFV-AEPGNVLLAA 720
Query: 656 DYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFG 715
DYSQIELR+ AH++ L AF G DIH TAM +FG V + R AK +NF
Sbjct: 721 DYSQIELRLAAHMADVPALKEAFAAGEDIHARTAMEMFG-----TVDRDTRGRAKTINFA 775
Query: 716 IVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRR 775
I+YGIS +GL LG+ A+ ID YFER+PGI+ Y+ + +++GY ETLF R+
Sbjct: 776 ILYGISRWGLGGRLGVSADEAQAMIDRYFERFPGIQRYIHETLESVRERGYSETLFGRKT 835
Query: 776 SLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGY-KSKMLLQVHD 834
P I+S+N RQ +ER AIN+PIQG++ADI+K AM + L + G +MLLQVHD
Sbjct: 836 WFPRISSKNQAERQGSERAAINAPIQGTSADIIKRAMARMMPALTEAGLGHVRMLLQVHD 895
Query: 835 EIVLEVPNEEIGAIRELVTKTM----ESAISLSVPLIADENAGETW 876
E+V E+P ++ A + ++ + M E A+ LSVPL + G +W
Sbjct: 896 ELVFELPQGDVEAAKPVIERVMATAAEPAVKLSVPLGVEIGTGLSW 941
Score = 157 bits (397), Expect = 9e-37
Identities = 100/299 (33%), Positives = 150/299 (49%), Gaps = 25/299 (8%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQ---- 56
M K L L+DGS+ FRA Y+++ N G+ A+YG+ ML + +
Sbjct: 1 MDEKQHLYLVDGSAYIFRA----YHRLPPLTNPRGVPVGAVYGYTTMLWKLAEDLHKADG 56
Query: 57 PSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEA 116
P+H+ V D T+FR ++Y YK R P++ QFP IR + E + EA
Sbjct: 57 PTHLAVILDKAGTSFRNDLYDQYKANRPPPPEDLVPQFPLIRDATRAFSLACIEEDALEA 116
Query: 117 DDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNT-------VVEISKKGVAEFEEFT 169
DD+I + A+ A +D+T+VS DKDL+QL +++ K + E
Sbjct: 117 DDLIASYARAATLRG--WDVTIVSSDKDLMQLVGKCATGGGCIDMLDTMKNQRIDIPE-- 172
Query: 170 PAYLMEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAM 229
++EK G+ P + D+ ALMGD DN+PG+ IG KT KL+ E+G LE M
Sbjct: 173 ---VVEKFGVPPEKVGDVLALMGDSVDNVPGIRGIGPKTATKLIQEHGDLESALAAAPTM 229
Query: 230 KQSKMKENLINDKEQAFLSKTLATINIASPITIGLEDI-LYSGPQDIKALSQFYDEMDF 287
K K++E+LI E A LS+ L + P+ + +ED L P+D L+ F +E F
Sbjct: 230 KAGKLRESLIEQAEMARLSRVLVALKEDCPLPVPIEDFKLGQIPRD--PLAAFLEEHGF 286
>gi|15487835|gb|AAL00966.1|AF401678_1 DNA polymerase I
[Lactobacillus sakei]
Length = 343
Score = 303 bits (777), Expect = 6e-81
Identities = 169/325 (52%), Positives = 220/325 (67%), Gaps = 7/325 (2%)
Query: 327 EMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEALFKKAL---SKPIKTYDFKRSKVLL 383
EML DNYH DLIG G D Y + +V+LL E + K L S P + KR++V
Sbjct: 13 EMLTDNYHTADLIGFYIGAPDHWYVSDDVALLAEPVLKDWLEDASHPKAVFGVKRTQVAA 72
Query: 384 NRFNIDLPEPAFDTRLAKYLLSTTED-NLVSTIARLYTNLPLDTDDAVYGKGAKRAIPEK 442
NR + L FD LA YLL+TT + N + T+A L+ + TD+AVYGKGAKRA+P +
Sbjct: 73 NRLGVHLAGVDFDLLLASYLLNTTNNSNDLGTVANLHEYQNVQTDEAVYGKGAKRAVPTE 132
Query: 443 TRFL-EHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNT 501
L +HL +K + + + +QLK ++Q +L +ME PLA VLA+MEI GI+V +
Sbjct: 133 PALLYQHLVQKAAAIYHLQPQLEEQLKEHQQFDLFTDMELPLALVLAQMEITGIRVDASR 192
Query: 502 LNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTA 561
L +M E + ++ L +++Y AG+ FNINSPKQLG +LFE +GLPV KKTKTGYSTA
Sbjct: 193 LQQMGSEFSQTLKILEEKVYAEAGETFNINSPKQLGVILFEKMGLPV--VKKTKTGYSTA 250
Query: 562 VDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSS 621
VDVLE+L +P+V IL+YRQI K+QSTY+ GL I +D K+HTRY+Q LTQTGRLSS
Sbjct: 251 VDVLEQLRKDAPIVQTILDYRQIAKIQSTYVEGLLKSIHQDNKVHTRYLQTLTQTGRLSS 310
Query: 622 SDPNLQNIPVRLEQGRLIRKAFVPS 646
DPNLQNIPVRL +GR IR+AFVPS
Sbjct: 311 VDPNLQNIPVRLAEGRKIRQAFVPS 335
>gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 627
Score = 303 bits (775), Expect = 1e-80
Identities = 216/564 (38%), Positives = 323/564 (56%), Gaps = 18/564 (3%)
Query: 326 FEMLGDNYHVEDLIGIAWGNSDTIYATSNVSLLQEALFKKALSKPIKTYDFK----RSKV 381
++ + Y+ E I I+ + D + ++ LL + + K + I + K KV
Sbjct: 73 YKKIASIYYEELGIIISTEDKDFYFPLNHGGLLAKNIDKNLVVNFISELNIKFISYNFKV 132
Query: 382 LLNRFNIDLPEPAFDTRLAKYLLST-TEDNLVSTIARLYTNLPLDTDDAVYGKGAKRAIP 440
LLN I+ D +A +L+S+ T+ + + I Y+ L +GK I
Sbjct: 133 LLN-LGINFKSMYMDMMIAYHLISSQTKIDPIIPITE-YSKLEPKDFKTAFGKINIELIT 190
Query: 441 EK--TRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVK 498
+ +++L + + + D E N + LK + ++L E E PL VL+ ME +GI++
Sbjct: 191 AQDFSKYLSATSIGILAIYD-ELNYL--LKKEDLYKILMENEMPLIQVLSLMERKGIEID 247
Query: 499 KNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGY 558
++E K + + + IYE AG+EFNINSPKQLG +LF L LP KKTKTGY
Sbjct: 248 IQYFKNYSLELDKELLRIEKAIYEEAGEEFNINSPKQLGDILFVKLNLP--SGKKTKTGY 305
Query: 559 STAVDVLERLAPISPLVTK-ILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTG 617
ST V VLE L + + +L+YR++ KL++TY+ L + E+ +IHT + Q T TG
Sbjct: 306 STDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTLPLLVDENSRIHTTFNQIGTATG 365
Query: 618 RLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAA 677
RLSSSDPNLQNIPV+ + G IR+ FV VL+S DYSQ+ELRVL +SKDE+LI A
Sbjct: 366 RLSSSDPNLQNIPVKTDDGIKIREGFVAGA-GKVLMSIDYSQVELRVLTSMSKDENLIEA 424
Query: 678 FKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAK 737
++E D+H TA R+F + E V+ R AK +NF I+YG + FGL+ L IP K A
Sbjct: 425 YREEKDLHDLTARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDAS 484
Query: 738 QYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAIN 797
+YI YFE+YP + ++ V+ ++ GYV+TLF R+R + I+S+N I+ AER A+N
Sbjct: 485 EYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVN 544
Query: 798 SPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTME 857
+ IQG+AA++LK M+ + VL K +LLQVHDE++ EV + E++ M+
Sbjct: 545 TVIQGTAAEVLKKVMVKVYDVL-KDKEDITLLLQVHDELIFEVEENSVEKYSEILADIMK 603
Query: 858 SAISLS-VPLIADENAGETWYEAK 880
+ + L V L + N G+ W EAK
Sbjct: 604 NTVQLEDVKLNININIGKNWAEAK 627
>gi|32034753|ref|ZP_00134878.1| hypothetical protein [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
Length = 273
Score = 290 bits (743), Expect = 7e-77
Identities = 146/275 (53%), Positives = 201/275 (73%), Gaps = 3/275 (1%)
Query: 605 IHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRV 664
+HT Y Q +T TGRLSSSDPNLQNIP+R E+GR IR+AF+ + D ++++DYSQIELR+
Sbjct: 1 MHTSYHQAVTATGRLSSSDPNLQNIPIRNEEGRRIRQAFI-ARDGYKIVAADYSQIELRI 59
Query: 665 LAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFG 724
+AH++ DE +I AF EG DIH +TA +FG+ + VT RR+AKA+NFG++YG+S+FG
Sbjct: 60 MAHLANDEGMITAFAEGKDIHCATAAEIFGLAL-DQVTSEQRRSAKAINFGLIYGMSEFG 118
Query: 725 LSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRN 784
LS+ LGI R AK+Y++ YF+RYP ++ +M + A +KGYVETLF RR LP+I S N
Sbjct: 119 LSNQLGISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSN 178
Query: 785 FNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844
R+ AER AIN+P+QG+AADI+K+AMI++D+ + +G KM++QVHDE+V EV E
Sbjct: 179 AMRRKAAERVAINAPMQGTAADIIKVAMIDIDKAI-RGDDNIKMIMQVHDELVFEVKEEL 237
Query: 845 IGAIRELVTKTMESAISLSVPLIADENAGETWYEA 879
I +L+ ME AI L VPLIA+ G+ W EA
Sbjct: 238 IEHYSQLIKAEMEKAIQLKVPLIAEVGVGDNWDEA 272
>gi|23336564|ref|ZP_00121775.1| hypothetical protein
[Bifidobacterium longum DJO10A]
Length = 682
Score = 286 bits (733), Expect = 9e-76
Identities = 197/538 (36%), Positives = 287/538 (52%), Gaps = 33/538 (6%)
Query: 359 QEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTT--EDNLVSTIA 416
Q A F K+ + +K LL ++D+ P FDT+LA YL D+L
Sbjct: 153 QLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAE 212
Query: 417 RLY------TNLP----LDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQ 466
T P LD DD + E EH + + ++ +
Sbjct: 213 HFLDIHFTETEQPSQGTLDFDD--------DQVEEDPN--EHRLRDLAIIRSLAVTLGPI 262
Query: 467 LKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ 526
+ EQ L+ +E P++ VL ME G KV L M + + +E AG
Sbjct: 263 IDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGT 322
Query: 527 EFNINSPKQLGKLLFETLGLPVEMTKKTKTG-YSTAVDVLERLAPIS-------PLVTKI 578
E N+ SPKQL K+LFE +GL + TK+TK+G Y+T L+ L S + +
Sbjct: 323 EINLQSPKQLQKVLFEDMGL--KPTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGAL 380
Query: 579 LEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRL 638
L +R+I KL+ + D +IHT + Q + TGRLSS DPNLQNIP R GR
Sbjct: 381 LRHREINKLKQIVQTLIDATNTSDERIHTTFEQTVAATGRLSSVDPNLQNIPNRNAAGRE 440
Query: 639 IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKP 698
IR FVP E L+S DYSQ+ELR++A +S DE LI AF+ GAD H A V+ +
Sbjct: 441 IRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKL-PV 499
Query: 699 ENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVV 758
+ +T + R + KA+++G+ YG+S +GL+ L I + A+ + YF+ + + +Y+E++V
Sbjct: 500 DQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESLV 559
Query: 759 REAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRV 818
A++KGY ET+F RRR P ++S N R+ AER A+N+PIQGSAADI+KIAMI ++
Sbjct: 560 ANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQT 619
Query: 819 LDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETW 876
L + KS+++LQ+HDE+V+E+ E + ELV ME A+ L+VPL G W
Sbjct: 620 LAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVRNAMEHAVDLAVPLDVSCGIGSDW 677
>gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter
hepaticus ATCC 51449]
gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus
ATCC 51449]
Length = 912
Score = 278 bits (712), Expect = 2e-73
Identities = 168/409 (41%), Positives = 235/409 (57%), Gaps = 12/409 (2%)
Query: 474 ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSP 533
EL ++E P VL ME GIKV L + + + I L+ +I+EL G+ FN+NSP
Sbjct: 514 ELANKLEYPFIKVLLAMECEGIKVDIPLLESLKEKASEHISQLSAQIFELCGETFNLNSP 573
Query: 534 KQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYII 593
+QL +LF LGL + + K G ST L + P++ IL+YR++ KL+STYI
Sbjct: 574 QQLAHILFNRLGL--KAGRSVKGGLSTDERTLLAIIDAHPVIALILDYREVNKLKSTYIE 631
Query: 594 GLQDYILEDGK--IHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAV 651
L + + K I+T ++Q T TGRLSS PNLQNIPVR E+GR IR+AF+ E ++
Sbjct: 632 PLLRFGSANDKHRIYTSFLQSGTATGRLSSKSPNLQNIPVRREEGRKIRQAFISKEGHS- 690
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
L+S DYSQIELR+LAH KD LI +FK+ DIH TA R+FG+E + R AK+
Sbjct: 691 LISIDYSQIELRLLAHFCKDSSLIESFKQDKDIHFETAARLFGVE----LAAQKRAIAKS 746
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
+NFG++YG+ L+ L I K AK YI++YF +P IKN++ + GY +TL
Sbjct: 747 INFGLIYGMGSKKLAQTLQISLKEAKNYIESYFALFPTIKNFLNAQKEFLLENGYSQTLL 806
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQ 831
RR N+ +F F R INS QGSAAD++K++M + + + KMLLQ
Sbjct: 807 GHRRYFDFKNATDFMKANFL-REGINSIFQGSAADLIKLSMCEIHKRYGHSDF--KMLLQ 863
Query: 832 VHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VHDE++ E P E+ + + M L VPL + G+ W E K
Sbjct: 864 VHDELIFEAPQEKAHIYAQEAAQIMNHIYELEVPLKCGISIGKNWAELK 912
Score = 134 bits (336), Expect = 1e-29
Identities = 87/255 (34%), Positives = 131/255 (51%), Gaps = 17/255 (6%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
N L +ID FR+F+AL KN G T + GF +L + +++ A
Sbjct: 2 NTLSVIDTFGFFFRSFYAL----PPLKNKEGFPTGLLVGFCNLLQSLYKDPSCTYLAFAL 57
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
+ G R ++Y YK R P E Q P + ++ +G + +E YEADD+I ++
Sbjct: 58 EGGGENKRRQIYDAYKRNRQPPPQELLMQLPIAIEWIEKMGFLNISIEGYEADDVIASIN 117
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVV--EISKKGVAEFEEFTPAYLMEKMGITPS 182
K A A N + ++S DKDL QL D NT + I K+ + E E + K G+ P
Sbjct: 118 KVANAQN--IVVRIISHDKDLYQLIDENTYIYDPIGKRDIREAE------CLYKYGVNPK 169
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYE---NIEAMKQSKMKENLI 239
FID ++L+GD SDNI G+ IG K+ KL++ +GS+E +YE +E + ++ L
Sbjct: 170 NFIDYQSLVGDTSDNIVGIKGIGAKSAQKLITHFGSIESLYERESELEEVVTPRIAHLLR 229
Query: 240 NDKEQAFLSKTLATI 254
K AFLSK L T+
Sbjct: 230 EGKNNAFLSKKLVTL 244
>gi|23040910|ref|ZP_00072402.1| hypothetical protein [Trichodesmium
erythraeum IMS101]
Length = 1045
Score = 278 bits (712), Expect = 3e-73
Identities = 174/461 (37%), Positives = 281/461 (60%), Gaps = 40/461 (8%)
Query: 446 LEHLAKKVKVLVDSEANIMQQLKANEQEEL---LFEMEQPLANVLAKMEIRGIKVKKNTL 502
LE + K+ VDS+ ++Q+ E E+ F +Q L ++ + K +
Sbjct: 599 LEEIEKRAFKTVDSQ--VLQKYLQTEIHEIDFNSFSNQQELKKAISS------PILKAYI 650
Query: 503 NEMAIENQKVIETLTQEIYELAGQE-FNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTA 561
++ E+++ +E + +I ++ ++ N+NSP QL +LLF L + +++ KTGYST
Sbjct: 651 TKLLKEHRQNLENIESQINQVETRDLLNLNSPSQLSELLFRILNQNHKKSRRIKTGYSTD 710
Query: 562 VDVLERLAPIS---PLVTKILEYRQITKLQSTYIIGLQDYILEDG-KIHTRYVQDLTQTG 617
V LE+L P++ +IL +R + KL STY+ + + D ++HT + Q T TG
Sbjct: 711 VVALEKLQTEPEHHPIIDEILNHRTLYKLFSTYVEAIPRLVRSDTQRVHTNFNQTQTDTG 770
Query: 618 RLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAA 677
RLSSS+PNLQNIP+ + R IR+AF+P +D +L+++DYSQIELR+LAH+S++ LI A
Sbjct: 771 RLSSSEPNLQNIPIGTKFSRQIRQAFLPKKD-WLLVAADYSQIELRILAHLSQEPVLIEA 829
Query: 678 FKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAK 737
+K D+HT TA +F + E ++ +RR K +NFG++YG+ L+ ++ I K +K
Sbjct: 830 YKNNQDVHTVTAKLLF---EKEEISSEERRVGKTINFGVIYGMGAQKLARSVKITVKESK 886
Query: 738 QYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRR----------RSLPDINSRNFNI 787
Q+++ Y ++Y + Y+E + ++A KGYVET+ RR R L D N+
Sbjct: 887 QFLEKYKQQYSLVFAYLEKLKKQAIAKGYVETILGRRRYFELESKTIRDLKDKEPEEINL 946
Query: 788 RQ--FAE------RTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLE 839
++ F++ R+A NSPIQGS+ADI+KIAMI L+++L Y++K+LLQVHDE+V E
Sbjct: 947 QELKFSQNDAQILRSAANSPIQGSSADIIKIAMIRLNKILTN--YQTKLLLQVHDELVFE 1004
Query: 840 VPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
VP E+ +++L+ TME+A++L VPLI D + G+ W E K
Sbjct: 1005 VPPSELEKMQQLIKSTMENAVTLKVPLIVDIHGGKNWMETK 1045
Score = 170 bits (430), Expect = 1e-40
Identities = 110/332 (33%), Positives = 183/332 (54%), Gaps = 17/332 (5%)
Query: 8 LLIDGSSVAFRAFFALYNQID-RFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L +DG S+AFR+++A + K ++G+ T+ +GF L ++ +P ++ +AFD
Sbjct: 9 LFVDGHSLAFRSYYAFAKSRNGGLKTSTGIPTSICFGFLKSLLEVINTQKPEYLAIAFDL 68
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
GK TFR E +YK R + P++ ++ L + YEADDI+GTLAK+
Sbjct: 69 GKPTFRHEADKNYKADRPEPPEDLIIDLGNLQDLLKAFNLTVITAPGYEADDILGTLAKK 128
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTN---TVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A A+ F + ++SGD+DL QL D +V+ + + +EF P + EK+GI P+Q
Sbjct: 129 ASATG--FKVKILSGDQDLFQLIDAEKGISVLHLPGGKGSIPQEFFPEEVKEKLGILPTQ 186
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+D KAL GDKSDNIPGV IG+KT +KLL+EYG L IY ++E +K + K+ L+ K
Sbjct: 187 VVDYKALCGDKSDNIPGVRGIGQKTAVKLLNEYGCLSEIYASLEQIKGAN-KKKLVLGKT 245
Query: 244 QAFLSKTLATINIASPITIGLEDILYSG--PQDIKALSQFYDEMDF--------KQFKAA 293
+A S+ +A I + P+ I +ED + P +I+ + Q + F +QF +
Sbjct: 246 EAEHSQFMAKIEVNVPLNIDIEDCKFKKIYPSEIEPILQKLELQHFINKIPHLEQQFNSL 305
Query: 294 LGEETSQEDFEVDFTEVEQLKTEMFSDNDFYY 325
+ ++ ++ + E+ Q +D+++
Sbjct: 306 VEVKSGLDESGIQQQEISQNTLVEIGSDDWFF 337
>gi|15612428|ref|NP_224081.1| DNA POLYMERASE I [Helicobacter pylori
J99]
gi|9789748|sp|Q9ZJE9|DPO1_HELPJ DNA polymerase I (POL I)
gi|7434814|pir||F71816 DNA polymerase I - Helicobacter pylori
(strain J99)
gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori
J99]
Length = 897
Score = 255 bits (652), Expect = 2e-66
Identities = 164/434 (37%), Positives = 241/434 (54%), Gaps = 21/434 (4%)
Query: 456 LVDSEANIMQQL-----KANEQEELLF---EMEQPLANVLAKMEIRGIKVKKNTLNEMAI 507
L+ E N +++L K +E+LL ++E P VL ME +G K+ +
Sbjct: 475 LLSMELNALKRLCEYFEKGGLEEDLLTLARDIETPFVKVLMGMEFQGFKIDAPYFKRLEQ 534
Query: 508 ENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLER 567
E + + L ++I +L G +FN+NSPKQLG++L++ LGLP K K+ +ST L +
Sbjct: 535 EFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYDKLGLP-----KNKS-HSTDEKNLLK 588
Query: 568 LAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQ 627
+ P + ILEYR++ KL +TY L +D KIHT ++Q T TGRLSS PNLQ
Sbjct: 589 ILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTGTATGRLSSHSPNLQ 648
Query: 628 NIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTS 687
NIPVR +G LIRK F+ S LL DYSQIELR+LAH S+D+ L+ AF +G DIH
Sbjct: 649 NIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLE 708
Query: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERY 747
T+ +FG E++ R AK++NFG+VYG+ LS L IP AK YI+ YF+R+
Sbjct: 709 TSKALFG----EDLAKEKRSIAKSINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRF 764
Query: 748 PGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADI 807
P IK+Y+ + E TL R R D N ++ R +N+ QGSA+D+
Sbjct: 765 PSIKDYLNGMREEILKTSKAFTLLGRYRVF-DFTGVNDYVKGNYLREGVNAIFQGSASDL 823
Query: 808 LKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAI-SLSVPL 866
LK+ M+ + K ++LLQVHDE++ E+ + +++ + + + + L VPL
Sbjct: 824 LKLGMLKVSERF-KNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYPLRVPL 882
Query: 867 IADENAGETWYEAK 880
+ W E K
Sbjct: 883 ETSAFIAKRWNELK 896
Score = 114 bits (286), Expect = 6e-24
Identities = 87/252 (34%), Positives = 119/252 (46%), Gaps = 16/252 (6%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHIL-GRVQPSHILVAFD 65
L LID + FR+++ + + N+ G T + G M+ R I+ A +
Sbjct: 11 LALIDTFAYLFRSYY-MSAKNKPLTNDKGFPTGLLTGLVGMVKKFYKDRKNMPFIVFALE 69
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
+ T R E +YK R P E Q P + L +G E+ +EADD+I +LA
Sbjct: 70 SQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEVGGFEADDVIASLAT 129
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
+ + + S DKD QL + K EF +EK GI PSQF
Sbjct: 130 LSP-----YKTRIYSKDKDFNQLLSDKIALFDGKT------EFLAKDCVEKYGILPSQFT 178
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQ---SKMKENLINDK 242
D + ++GD SDN GV IG K +LL GSLE IYEN++ K KM + LI DK
Sbjct: 179 DYQGIVGDSSDNYKGVKGIGSKNAKELLQRLGSLEKIYENLDLAKNLLSPKMYQALIQDK 238
Query: 243 EQAFLSKTLATI 254
AFLSK LAT+
Sbjct: 239 GSAFLSKELATL 250
>gi|847765|gb|AAC44593.1| DNA polymerase I
Length = 242
Score = 220 bits (560), Expect = 1e-55
Identities = 108/238 (45%), Positives = 161/238 (67%), Gaps = 1/238 (0%)
Query: 639 IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKP 698
IR AFV E A L+++DYSQIE+R++AH+S+D LI AF G D+H+ A R F +
Sbjct: 1 IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60
Query: 699 ENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVV 758
E VTP RR KA+++G+ YG+S +G++ L I + AK ++ YF+R+ G+++Y+ VV
Sbjct: 61 E-VTPELRRRVKAMSYGLAYGLSAYGVAQQLKISTEEAKVQMEQYFDRFGGVRDYLRDVV 119
Query: 759 REAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRV 818
+A+ GY T+ RRR LP+++S N +R+ AER A+N+PIQGSAADI+K+AMIN+D+
Sbjct: 120 DQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQA 179
Query: 819 LDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETW 876
+ G +S++LLQVHDE++ EV E G + +LV + M +A L VPL G +W
Sbjct: 180 IKDAGLRSRILLQVHDELLFEVSEGERGELEQLVREHMGNAYPLDVPLEVSVGYGRSW 237
>gi|30387615|ref|NP_084253.1| polymerase (DNA directed), theta [Mus
musculus]
gi|29825886|gb|AAL77225.1| DNA polymerase theta [Mus musculus]
Length = 2544
Score = 218 bits (556), Expect = 3e-55
Identities = 197/684 (28%), Positives = 308/684 (44%), Gaps = 134/684 (19%)
Query: 322 DFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQEALFKKA-LSKPIKTYDFKRS 379
D YY + + E +A D T+ + LQ L KK+ + + TYDF ++
Sbjct: 1866 DAYYLSLQKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQT 1925
Query: 380 -KVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN-LP--------LDTDD 428
KVLL I L EP++ D ++A +LL D+ T+ + T+ LP ++T
Sbjct: 1926 YKVLLLSCGISL-EPSYEDPKVACWLLDP--DSKEPTLHSIVTSFLPHELALLEGMETGP 1982
Query: 429 AVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVL 487
+ G R+ A VL+ + N + L E +F ++E P L
Sbjct: 1983 GIQSLGLNVNTEHSGRY---RASVESVLIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCL 2039
Query: 488 AKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP 547
A +E+ GI Q ++ + + Y+LAG F+ S + ++LF L LP
Sbjct: 2040 ALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKLP 2099
Query: 548 ------VEMTKKT--------KTG--------YSTAVDVLERLAPISPLVTKILEYRQIT 585
+ +KKT ++G +ST+ D+L +L + PL ILE+R+I+
Sbjct: 2100 PNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLPGLILEWRRIS 2159
Query: 586 KLQSTYIIGLQ-----DYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE------ 634
+ + LQ + +L +I+ Q T TGR++ ++PN+QN+P E
Sbjct: 2160 NAITKVVFPLQREKHLNPLLRMERIYP-VSQSHTATGRITFTEPNIQNVPRDFEIKMPTL 2218
Query: 635 ----------QGRL-----------------------------------IRKAFVPSEDN 649
+GR +R AFVP
Sbjct: 2219 VRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMRHAFVPFP-G 2277
Query: 650 AVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNA 709
++L++DYSQ+ELR+LAH+S+D LI GAD+ S A IE P+ V + R++A
Sbjct: 2278 GLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIE-PDAVGDDLRQHA 2336
Query: 710 KAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVET 769
K + +GI+YG+ L +GI A YID++ RY GI ++M V+ + G+VET
Sbjct: 2337 KQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCRKNGFVET 2396
Query: 770 LFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD-------KG 822
+ RRR LP I N + AER AIN+ +QGSAADI+KIA +N+ + L+
Sbjct: 2397 ILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFRSTFKSH 2456
Query: 823 GYKSKML--------------------------LQVHDEIVLEVPNEEIGAIRELVTKTM 856
G++ ML LQ+HDE++ EV E++ + ++V M
Sbjct: 2457 GHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEM 2516
Query: 857 ESAISLSVPLIADENAGETWYEAK 880
E AI LSV L G +W E K
Sbjct: 2517 ECAIKLSVKLKVKVKIGASWGELK 2540
>gi|32306445|gb|AAN39838.1| DNA polymerase Q [Mus musculus]
Length = 2587
Score = 218 bits (555), Expect = 4e-55
Identities = 197/684 (28%), Positives = 308/684 (44%), Gaps = 134/684 (19%)
Query: 322 DFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQEALFKKA-LSKPIKTYDFKRS 379
D YY + + E +A D T+ + LQ L KK+ + + TYDF ++
Sbjct: 1909 DAYYLSLQKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQT 1968
Query: 380 -KVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN-LP--------LDTDD 428
KVLL I L EP++ D ++A +LL D+ T+ + T+ LP ++T
Sbjct: 1969 YKVLLLSCGISL-EPSYEDPKVACWLLDP--DSKEPTLHSIVTSFLPHELALLEGMETGP 2025
Query: 429 AVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVL 487
+ G R+ A VL+ + N + L E +F ++E P L
Sbjct: 2026 GIQSLGLNVNTEHSGRY---RASVESVLIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCL 2082
Query: 488 AKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP 547
A +E+ GI Q ++ + + Y+LAG F+ S + ++LF L LP
Sbjct: 2083 ALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKLP 2142
Query: 548 ------VEMTKKT--------KTG--------YSTAVDVLERLAPISPLVTKILEYRQIT 585
+ +KKT ++G +ST+ D+L +L + PL ILE+R+I+
Sbjct: 2143 PNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLPGLILEWRRIS 2202
Query: 586 KLQSTYIIGLQ-----DYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE------ 634
+ + LQ + +L +I+ Q T TGR++ ++PN+QN+P E
Sbjct: 2203 NAITKVVFPLQREKHLNPLLRMERIYP-VSQSHTATGRITFTEPNIQNVPRDFEIKMPTL 2261
Query: 635 ----------QGRL-----------------------------------IRKAFVPSEDN 649
+GR +R AFVP
Sbjct: 2262 VRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMRHAFVPFP-G 2320
Query: 650 AVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNA 709
++L++DYSQ+ELR+LAH+S+D LI GAD+ S A IE P+ V + R++A
Sbjct: 2321 GLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIE-PDAVGDDLRQHA 2379
Query: 710 KAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVET 769
K + +GI+YG+ L +GI A YID++ RY GI ++M V+ + G+VET
Sbjct: 2380 KQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCRKNGFVET 2439
Query: 770 LFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD-------KG 822
+ RRR LP I N + AER AIN+ +QGSAADI+KIA +N+ + L+
Sbjct: 2440 ILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFRSTFKSH 2499
Query: 823 GYKSKML--------------------------LQVHDEIVLEVPNEEIGAIRELVTKTM 856
G++ ML LQ+HDE++ EV E++ + ++V M
Sbjct: 2500 GHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEM 2559
Query: 857 ESAISLSVPLIADENAGETWYEAK 880
E AI LSV L G +W E K
Sbjct: 2560 ECAIKLSVKLKVKVKIGASWGELK 2583
>gi|27464957|gb|AAN64234.1| DNA polymerase theta short isoform [Mus
musculus]
Length = 2265
Score = 218 bits (554), Expect = 5e-55
Identities = 197/684 (28%), Positives = 308/684 (44%), Gaps = 134/684 (19%)
Query: 322 DFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQEALFKKA-LSKPIKTYDFKRS 379
D YY + + E +A D T+ + LQ L KK+ + + TYDF ++
Sbjct: 1587 DAYYLSLQKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQT 1646
Query: 380 -KVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN-LP--------LDTDD 428
KVLL I L EP++ D ++A +LL D+ T+ + T+ LP ++T
Sbjct: 1647 YKVLLLSCGISL-EPSYEDPKVACWLLDP--DSKEPTLHSIVTSFLPHELALLEGMETGP 1703
Query: 429 AVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVL 487
+ G R+ A VL+ + N + L E +F ++E P L
Sbjct: 1704 GIQSLGLNVNTEHSGRY---RASVESVLIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCL 1760
Query: 488 AKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP 547
A +E+ GI Q ++ + + Y+LAG F+ S + ++LF L LP
Sbjct: 1761 ALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKLP 1820
Query: 548 ------VEMTKKT--------KTG--------YSTAVDVLERLAPISPLVTKILEYRQIT 585
+ +KKT ++G +ST+ D+L +L + PL ILE+R+I+
Sbjct: 1821 PNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLPGLILEWRRIS 1880
Query: 586 KLQSTYIIGLQ-----DYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE------ 634
+ + LQ + +L +I+ Q T TGR++ ++PN+QN+P E
Sbjct: 1881 NAITKVVFPLQREKHLNPLLRMERIYP-VSQSHTATGRITFTEPNIQNVPRDFEIKMPTL 1939
Query: 635 ----------QGRL-----------------------------------IRKAFVPSEDN 649
+GR +R AFVP
Sbjct: 1940 VRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMRHAFVPFP-G 1998
Query: 650 AVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNA 709
++L++DYSQ+ELR+LAH+S+D LI GAD+ S A IE P+ V + R++A
Sbjct: 1999 GLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIE-PDAVGDDLRQHA 2057
Query: 710 KAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVET 769
K + +GI+YG+ L +GI A YID++ RY GI ++M V+ + G+VET
Sbjct: 2058 KQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCRKNGFVET 2117
Query: 770 LFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD-------KG 822
+ RRR LP I N + AER AIN+ +QGSAADI+KIA +N+ + L+
Sbjct: 2118 ILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFRSTFKSH 2177
Query: 823 GYKSKML--------------------------LQVHDEIVLEVPNEEIGAIRELVTKTM 856
G++ ML LQ+HDE++ EV E++ + ++V M
Sbjct: 2178 GHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEM 2237
Query: 857 ESAISLSVPLIADENAGETWYEAK 880
E AI LSV L G +W E K
Sbjct: 2238 ECAIKLSVKLKVKVKIGASWGELK 2261
>gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium
leprae]
gi|1169403|sp|P46835|DPO1_MYCLE DNA polymerase I (POL I)
gi|7434824|pir||S77659 DNA-directed DNA polymerase (EC 2.7.7.7) -
Mycobacterium leprae
gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae]
gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae]
Length = 911
Score = 217 bits (553), Expect = 6e-55
Identities = 122/306 (39%), Positives = 179/306 (57%), Gaps = 13/306 (4%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K L+L+DG+S+AFRAF+AL + FK GL TNA+YGF ML ++L P+HI A
Sbjct: 15 KPMLMLLDGNSLAFRAFYAL--PTENFKTRGGLTTNAVYGFTAMLINLLREEAPTHIAAA 72
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FD + TFR+E YA YK R+ P EF Q ++ L LGI + +EADD+I TL
Sbjct: 73 FDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEADDLIATL 132
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A QAE NE + + VV+GD+D +QL + V +KGV+E FTP ++EK G+TP+Q
Sbjct: 133 ATQAE--NEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGVTPAQ 190
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ DL AL GD SDN+PG+ +GEKT K + +YGSL+G+ +N+E+++ K+ E L
Sbjct: 191 YPDLAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVR-GKVGEALRTHLA 249
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFK-------AALGE 296
++ L + P+ + D L P D + + +D ++F+ + AA GE
Sbjct: 250 SVVRNRELTELVKDVPL-VQTSDTLRLQPWDRDRIHRLFDNLEFRVLRDRLFEALAAAGE 308
Query: 297 ETSQED 302
+ D
Sbjct: 309 RVPEVD 314
>gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae]
Length = 907
Score = 217 bits (553), Expect = 6e-55
Identities = 122/306 (39%), Positives = 179/306 (57%), Gaps = 13/306 (4%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K L+L+DG+S+AFRAF+AL + FK GL TNA+YGF ML ++L P+HI A
Sbjct: 11 KPMLMLLDGNSLAFRAFYAL--PTENFKTRGGLTTNAVYGFTAMLINLLREEAPTHIAAA 68
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FD + TFR+E YA YK R+ P EF Q ++ L LGI + +EADD+I TL
Sbjct: 69 FDVSRKTFRSECYAGYKANRSSIPAEFHGQIDITKEVLGALGITVFAEAGFEADDLIATL 128
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A QAE NE + + VV+GD+D +QL + V +KGV+E FTP ++EK G+TP+Q
Sbjct: 129 ATQAE--NEGYRVLVVTGDRDALQLVSNDVTVLYPRKGVSELTRFTPEAVIEKYGVTPAQ 186
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ DL AL GD SDN+PG+ +GEKT K + +YGSL+G+ +N+E+++ K+ E L
Sbjct: 187 YPDLAALRGDPSDNLPGIPGVGEKTAAKWIVDYGSLQGLVDNVESVR-GKVGEALRTHLA 245
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFK-------AALGE 296
++ L + P+ + D L P D + + +D ++F+ + AA GE
Sbjct: 246 SVVRNRELTELVKDVPL-VQTSDTLRLQPWDRDRIHRLFDNLEFRVLRDRLFEALAAAGE 304
Query: 297 ETSQED 302
+ D
Sbjct: 305 RVPEVD 310
>gi|28493899|ref|XP_148122.2| RIKEN cDNA A430110D14 [Mus musculus]
Length = 2168
Score = 217 bits (553), Expect = 6e-55
Identities = 197/684 (28%), Positives = 308/684 (44%), Gaps = 134/684 (19%)
Query: 322 DFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQEALFKKA-LSKPIKTYDFKRS 379
D YY + + E +A D T+ + LQ L KK+ + + TYDF ++
Sbjct: 1490 DAYYLSLQKEQKQSEISPSLAPPPLDATLTVKERMECLQSCLQKKSDRERSVVTYDFIQT 1549
Query: 380 -KVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN-LP--------LDTDD 428
KVLL I L EP++ D ++A +LL D+ T+ + T+ LP ++T
Sbjct: 1550 YKVLLLSCGISL-EPSYEDPKVACWLLDP--DSKEPTLHSIVTSFLPHELALLEGMETGP 1606
Query: 429 AVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVL 487
+ G R+ A VL+ + N + L E +F ++E P L
Sbjct: 1607 GIQSLGLNVNTEHSGRY---RASVESVLIFNSMNQLNSLLQKENLHDIFCKVEMPSQYCL 1663
Query: 488 AKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP 547
A +E+ GI Q ++ + + Y+LAG F+ S + ++LF L LP
Sbjct: 1664 ALLELNGIGFSTAECESQKHVMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLELKLP 1723
Query: 548 ------VEMTKKT--------KTG--------YSTAVDVLERLAPISPLVTKILEYRQIT 585
+ +KKT ++G +ST+ D+L +L + PL ILE+R+I+
Sbjct: 1724 PNGEMKTQGSKKTLGSTRRGNESGRRMRLGRQFSTSKDILNKLKGLHPLPGLILEWRRIS 1783
Query: 586 KLQSTYIIGLQ-----DYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE------ 634
+ + LQ + +L +I+ Q T TGR++ ++PN+QN+P E
Sbjct: 1784 NAITKVVFPLQREKHLNPLLRMERIYP-VSQSHTATGRITFTEPNIQNVPRDFEIKMPTL 1842
Query: 635 ----------QGRL-----------------------------------IRKAFVPSEDN 649
+GR +R AFVP
Sbjct: 1843 VRESPPSQAPKGRFPMAIGQDKKVYGLHPGHRTQMEEKASDRGVPFSVSMRHAFVPFP-G 1901
Query: 650 AVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNA 709
++L++DYSQ+ELR+LAH+S+D LI GAD+ S A IE P+ V + R++A
Sbjct: 1902 GLILAADYSQLELRILAHLSRDCRLIQVLNTGADVFRSIAAEWKMIE-PDAVGDDLRQHA 1960
Query: 710 KAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVET 769
K + +GI+YG+ L +GI A YID++ RY GI ++M V+ + G+VET
Sbjct: 1961 KQICYGIIYGMGAKSLGEQMGIKENDAASYIDSFKSRYKGINHFMRDTVKNCRKNGFVET 2020
Query: 770 LFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD-------KG 822
+ RRR LP I N + AER AIN+ +QGSAADI+KIA +N+ + L+
Sbjct: 2021 ILGRRRYLPGIKDDNPYHKAHAERQAINTTVQGSAADIVKIATVNIQKQLETFRSTFKSH 2080
Query: 823 GYKSKML--------------------------LQVHDEIVLEVPNEEIGAIRELVTKTM 856
G++ ML LQ+HDE++ EV E++ + ++V M
Sbjct: 2081 GHRESMLQNDRTGLLPKRKLKGMFCPMRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEM 2140
Query: 857 ESAISLSVPLIADENAGETWYEAK 880
E AI LSV L G +W E K
Sbjct: 2141 ECAIKLSVKLKVKVKIGASWGELK 2164
>gi|32364063|gb|AAN39837.2| DNA polymerase N [Mus musculus]
Length = 866
Score = 217 bits (553), Expect = 7e-55
Identities = 153/460 (33%), Positives = 246/460 (53%), Gaps = 32/460 (6%)
Query: 447 EHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMA 506
+++ +K+L D ++ +LKA +L +E PL +LA ME I V K + +
Sbjct: 396 QNVFMNLKILYDLTMDLCSKLKAYGLWQLFCTLELPLIPILAVMENHKIPVDKEEMERTS 455
Query: 507 IENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMTKK--TKTG----YST 560
++ L QE + +AG++F I S QL ++LF L L + +K +TG ST
Sbjct: 456 ALLGARLKELEQEAHFVAGEQFLIMSNNQLREILFGKLKLHLLSQRKHLPRTGLQNQLST 515
Query: 561 AVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLS 620
+ +L L + PL ILEYRQ+ K++ST+I GL Y ++ G I + + Q T TGRLS
Sbjct: 516 SEAMLNSLQDLHPLPKLILEYRQVHKIKSTFIDGLLAY-MKKGSISSTWNQTGTVTGRLS 574
Query: 621 SSDPNLQNI---PVRL----------EQGRLI--RKAFVPSEDNAVLLSSDYSQIELRVL 665
+ PN+Q I P+++ E+ I R FV SE + L++D+SQIELR+L
Sbjct: 575 AKHPNIQGISKHPIKISKPWNFKGKEEETVTISPRTLFVSSEGH-TFLAADFSQIELRIL 633
Query: 666 AHISKDEHLIAAFKEGADIHTSTAMRVFGIEKP-ENVTPNDRRNAKAVNFGIVYGISDFG 724
AH+S D L+ F+E + + + P E VT DR K V + +VYG
Sbjct: 634 AHLSGDPELLKLFQESERDDVFSTLTSQWKDIPIERVTHMDREQTKKVVYSVVYGAGKER 693
Query: 725 LSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRN 784
L+ LG+ A +++ + ++Y IK++ +TV+ + GYV ++ RRR LP I +++
Sbjct: 694 LAACLGVTVLEATHFLERFLQKYKKIKDFAQTVIGQCHSAGYVTSILGRRRPLPRICAQD 753
Query: 785 FNIRQFAERTAINSPIQGSAADILKIAMINLDR-VLDKGGYKSKMLLQVHDEIVLEVPNE 843
+R AER A+N +QGSAAD+ K+AMI + V ++++ Q+HDE++ EV +
Sbjct: 754 QQLRAQAERQAVNFVVQGSAADLCKLAMIRISTAVATSPTLTARLVAQIHDELLFEVEDT 813
Query: 844 EIGAIRELVTKTMES-------AISLSVPLIADENAGETW 876
++ LV + MES + L VPL + + G +W
Sbjct: 814 QVPEFAALVRRIMESLQQVQTLELQLQVPLKVNLSVGRSW 853
>gi|4105277|gb|AAD02338.1| putative DNA polymerase; POL4P [Homo
sapiens]
Length = 579
Score = 217 bits (552), Expect = 9e-55
Identities = 150/472 (31%), Positives = 250/472 (52%), Gaps = 33/472 (6%)
Query: 428 DAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVL 487
++ YG ++ + + R + +K L ++ +LK +L +E PL +L
Sbjct: 15 NSTYGNSSRNIVNQNVR------ENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPIL 68
Query: 488 AKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP 547
A ME I+V K + + + ++ L QE + +AG+ F I S QL ++LF L L
Sbjct: 69 AVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLH 128
Query: 548 VEMTKKT--KTGY----STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILE 601
+ + + +TG ST + L L + PL ILEYRQ+ K++ST++ GL ++
Sbjct: 129 LLSQRNSLPRTGLQKYPSTVSEALNALRDLHPLPKIILEYRQVHKIKSTFVDGLL-ACMK 187
Query: 602 DGKIHTRYVQDLTQTGRLSSSDPNLQNI---PVRL--------EQGRLI----RKAFVPS 646
G I + + Q T TGRLS+ PN+Q I P+++ ++ +++ R FV S
Sbjct: 188 KGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSS 247
Query: 647 EDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGA-DIHTSTAMRVFGIEKPENVTPND 705
+ + L++D+SQIELR+L H+S D L+ F+E D ST + E VT D
Sbjct: 248 KGH-TFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHAD 306
Query: 706 RRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKG 765
R K V + +VYG L+ LG+P + A Q+++++ ++Y IK++ + + G
Sbjct: 307 REQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTG 366
Query: 766 YVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINL-DRVLDKGGY 824
V ++ RRR LP I++ + +R AER A+N +QGSAAD+ K+AMI++ V
Sbjct: 367 CVVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTL 426
Query: 825 KSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETW 876
++++ Q+HDE++ EV + +I LV +TMES VPL +AG +W
Sbjct: 427 TARLVAQIHDELLFEVEDPQIPECAALVRRTMESL--EQVPLKVSLSAGRSW 476
>gi|17933644|ref|NP_524333.1| mutagen-sensitive 308 CG6019-PA
[Drosophila melanogaster]
gi|7511999|pir||T13858 probable DNA-directed DNA polymerase (EC
2.7.7.7) I - fruit fly (Drosophila melanogaster)
gi|2340084|gb|AAB67306.1| mus308 [Drosophila melanogaster]
gi|7299675|gb|AAF54858.1| CG6019-PA [Drosophila melanogaster]
Length = 2059
Score = 216 bits (549), Expect = 2e-54
Identities = 148/465 (31%), Positives = 252/465 (53%), Gaps = 30/465 (6%)
Query: 431 YGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKM 490
YG AI + R + +L N + ++ + + ++E P+ L +M
Sbjct: 1606 YGLDTSSAILPRIRTAIESCVTLHILQGQTEN-LSRIGNGDLLKFFHDIEMPIQLTLCQM 1664
Query: 491 EIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEM 550
E+ G +K L ++ V++ + +IYE G FN+ S + + K+L +
Sbjct: 1665 ELVGFPAQKQRLQQLYQRMVAVMKKVETKIYEQHGSRFNLGSSQAVAKVL--------GL 1716
Query: 551 TKKTKTGYSTAVDVLERL-APISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRY 609
+K K +T+ VLE+L +PIS L IL YR+++ L + I L + D +IH +
Sbjct: 1717 HRKAKGRVTTSRQVLEKLNSPISHL---ILGYRKLSGLLAKSIQPLMECCQAD-RIHGQS 1772
Query: 610 VQDLTQTGRLSSSDPNLQNIP--VRLEQGRLI-----RKAFVPSEDNAVLLSSDYSQIEL 662
+ T TGR+S ++PNLQN+ ++ G + R F+P++++ LLS+D+ Q+E+
Sbjct: 1773 IT-YTATGRISMTEPNLQNVAKEFSIQVGSDVVHISCRSPFMPTDESRCLLSADFCQLEM 1831
Query: 663 RVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISD 722
R+LAH+S+D+ L+ K D+ + A IE+ E VT + R + K V +GIVYG+
Sbjct: 1832 RILAHMSQDKALLEVMKSSQDLFIAIAAHWNKIEESE-VTQDLRNSTKQVCYGIVYGMGM 1890
Query: 723 FGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINS 782
L+ +L + A+ D + + Y GI++Y VV A+ KG+VET+ RRR L +INS
Sbjct: 1891 RSLAESLNCSEQEARMISDQFHQAYKGIRDYTTRVVNFARSKGFVETITGRRRYLENINS 1950
Query: 783 RNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDK-------GGYKSKMLLQVHDE 835
+++ AER A+NS IQGSAADI K A++ +++ +++ G +++ +HDE
Sbjct: 1951 DVEHLKNQAERQAVNSTIQGSAADIAKNAILKMEKNIERYREKLALGDNSVDLVMHLHDE 2010
Query: 836 IVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
++ EVP + I ++++ TME+ + LSVPL G +W E K
Sbjct: 2011 LIFEVPTGKAKKIAKVLSLTMENCVKLSVPLKVKLRIGRSWGEFK 2055
>gi|32698792|ref|NP_861524.1| DNA polymerase POL4P; DNA polymerase N
[Homo sapiens]
gi|32306441|gb|AAN52116.1| DNA polymerase N [Homo sapiens]
Length = 900
Score = 215 bits (547), Expect = 4e-54
Identities = 150/478 (31%), Positives = 247/478 (51%), Gaps = 36/478 (7%)
Query: 428 DAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVL 487
++ YG ++ + + R + +K L ++ +LK +L +E PL +L
Sbjct: 382 NSTYGNSSRNIVNQNVR------ENLKTLYRLTMDLCSKLKDYGLWQLFRTLELPLIPIL 435
Query: 488 AKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP 547
A ME I+V K + + + ++ L QE + +AG+ F I S QL ++LF L L
Sbjct: 436 AVMESHAIQVNKEEMEKTSALLGARLKELEQEAHFVAGERFLITSNNQLREILFGKLKLH 495
Query: 548 VEMTKKT--KTGY----STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILE 601
+ + + +TG ST+ VL L + PL ILEYRQ+ K++ST++ GL ++
Sbjct: 496 LLSQRNSLPRTGLQKYPSTSEAVLNALRDLHPLPKIILEYRQVHKIKSTFVDGLL-ACMK 554
Query: 602 DGKIHTRYVQDLTQTGRLSSSDPNLQNI---PVRLEQGRLIR-----------KAFVPSE 647
G I + + Q T TGRLS+ PN+Q I P+++ + + +A S
Sbjct: 555 KGSISSTWNQTGTVTGRLSAKHPNIQGISKHPIQITTPKNFKGKEDKILTISPRAMFVSS 614
Query: 648 DNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGA-DIHTSTAMRVFGIEKPENVTPNDR 706
L++D+SQIELR+L H+S D L+ F+E D ST + E VT DR
Sbjct: 615 KGHTFLAADFSQIELRILTHLSGDPELLKLFQESERDDVFSTLTSQWKDVPVEQVTHADR 674
Query: 707 RNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGY 766
K V + +VYG L+ LG+P + A Q+++++ ++Y IK++ + + G
Sbjct: 675 EQTKKVVYAVVYGAGKERLAACLGVPIQEAAQFLESFLQKYKKIKDFARAAIAQCHQTGC 734
Query: 767 VETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINL-DRVLDKGGYK 825
V ++ RRR LP I++ + +R AER A+N +QGSAAD+ K+AMI++ V
Sbjct: 735 VVSIMGRRRPLPRIHAHDQQLRAQAERQAVNFVVQGSAADLCKLAMIHVFTAVAASHTLT 794
Query: 826 SKMLLQVHDEIVLEVPNEEIGAIRELVTKTMES-------AISLSVPLIADENAGETW 876
++++ Q+HDE++ EV + +I LV +TMES + L VPL +AG +W
Sbjct: 795 ARLVAQIHDELLFEVEDPQIPECAALVRRTMESLEQVQALELQLQVPLKVSLSAGRSW 852
>gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces
griseus]
Length = 889
Score = 214 bits (545), Expect = 5e-54
Identities = 117/286 (40%), Positives = 175/286 (60%), Gaps = 8/286 (2%)
Query: 2 TNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHIL 61
TN+ +LLLIDG S+AFRAF+AL +D + G HTNA+YGF ML++I+ P I
Sbjct: 13 TNQPRLLLIDGHSMAFRAFYAL--PVDNLSTSGGQHTNAVYGFLSMLSNIVAEEAPDAIA 70
Query: 62 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIG 121
VAFD G+ TFRTEM+ DYK R P+EF+ Q IR+ L+VLGI E++EADDI+
Sbjct: 71 VAFDVGRKTFRTEMFPDYKAQREAAPEEFKGQVDLIREVLEVLGITTLSRENFEADDILA 130
Query: 122 TLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITP 181
TLA +A + ++ +V+GD+D +QL + +T V KGV+ FTP+ + EK G+TP
Sbjct: 131 TLATEA----QDYETLIVTGDRDYLQLVNESTTVLYPMKGVSTLHRFTPSAVEEKYGLTP 186
Query: 182 SQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIND 241
+Q+ D AL GD SDN+PG+ K+GEKT K + +YG L + E+ E +K + N
Sbjct: 187 AQYPDFAALRGDPSDNLPGIPKVGEKTATKWIVKYGDLASLVEHAEEIK-GVVGNNFRER 245
Query: 242 KEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
EQ +++ L + + +G D+ + + ++F D+++F
Sbjct: 246 IEQVQMNRKLTQMITDMDLEVGPNDLAFKEAKVADVAAKF-DDLEF 290
>gi|4163931|gb|AAD05272.1| DNA polymerase eta [Homo sapiens]
Length = 1154
Score = 213 bits (542), Expect = 1e-53
Identities = 192/682 (28%), Positives = 302/682 (44%), Gaps = 129/682 (18%)
Query: 322 DFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQEALFKKALSK-PIKTYDFKRS 379
D YYF + + H E + + D ++ + LQ L K++ + + YDF +S
Sbjct: 477 DAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQS 536
Query: 380 -KVLLNRFNIDLPEPAFDTRLAKYLL--STTEDNLVSTIARLYTN-LPL----DTDDAVY 431
K+LL I L + D ++A +LL + E L S + + + LPL +T +
Sbjct: 537 YKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFFPHELPLLEGMETSQGIQ 596
Query: 432 GKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKM 490
G R+ A +L+ + N + L E + +F ++E P LA +
Sbjct: 597 SLGLNAGSEHSGRY---RASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALL 653
Query: 491 EIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP--- 547
E+ GI Q ++ + + Y+LAG F+ S + ++LF L LP
Sbjct: 654 ELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNR 713
Query: 548 -----------------VEMTKKTKTG--YSTAVDVLERLAPISPLVTKILEYRQITKLQ 588
++ +K + G +ST+ DVL +L + PL ILE+R+IT
Sbjct: 714 EMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAI 773
Query: 589 STYIIGLQ-----DYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE--------- 634
+ + LQ + L +I+ Q T TGR++ ++PN+QN+P E
Sbjct: 774 TKVVFPLQREKCLNPFLGMERIYP-VSQSHTATGRITFTEPNIQNVPRDFEIKMPTLVGE 832
Query: 635 -----------------------------QGRLIRKA--------------FVPSEDNAV 651
Q ++ +A FVP ++
Sbjct: 833 SPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSI 892
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
L++DYSQ+ELR+LAH+S D LI GAD+ S A IE PE+V + R+ AK
Sbjct: 893 -LAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE-PESVGDDLRQQAKQ 950
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
+ +GI+YG+ L +GI A YID++ RY GI +M V+ K G+V+T+
Sbjct: 951 ICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTIL 1010
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD-------KGGY 824
RRR LP I N + AER AIN+ +QGSAADI+KIA +N+ + L+ G+
Sbjct: 1011 GRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGH 1070
Query: 825 KSKML--------------------------LQVHDEIVLEVPNEEIGAIRELVTKTMES 858
+ ML LQ+HDE++ EV E++ + ++V MES
Sbjct: 1071 REGMLQSDQTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVAEEDVVQVAQIVKNEMES 1130
Query: 859 AISLSVPLIADENAGETWYEAK 880
A+ LSV L G +W AK
Sbjct: 1131 AVKLSVKLKVKVKIGASWGRAK 1152
>gi|16418479|ref|NP_006587.2| polymerase (DNA directed), theta;
polymerase (DNA-directed), theta [Homo sapiens]
gi|13892061|gb|AAK39635.1| DNA polymerase theta [Homo sapiens]
Length = 2724
Score = 206 bits (524), Expect = 2e-51
Identities = 193/682 (28%), Positives = 301/682 (43%), Gaps = 129/682 (18%)
Query: 322 DFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQEALFKKALSK-PIKTYDFKRS 379
D YYF + + H E + + D ++ + LQ L K++ + + YDF +S
Sbjct: 2045 DAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQS 2104
Query: 380 -KVLLNRFNIDLPEPAFDTRLAKYLL--STTEDNLVSTIAR-LYTNLPL----DTDDAVY 431
K+LL I L + D ++A +LL + E L S + L LPL +T +
Sbjct: 2105 YKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGMETSQGIQ 2164
Query: 432 GKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKM 490
G R+ A +L+ + N + L E + +F ++E P LA +
Sbjct: 2165 SLGLNAGSEHSGRY---RASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALL 2221
Query: 491 EIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP--- 547
E+ GI Q ++ + + Y+LAG F+ S + ++LF L LP
Sbjct: 2222 ELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNR 2281
Query: 548 -----------------VEMTKKTKTG--YSTAVDVLERLAPISPLVTKILEYRQITKLQ 588
++ +K + G +ST+ DVL +L + PL ILE+R+IT
Sbjct: 2282 EMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAI 2341
Query: 589 STYIIGLQ-----DYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE--------- 634
+ + LQ + L +I+ Q T TGR++ ++PN+QN+P E
Sbjct: 2342 TKVVFPLQREKCLNPFLGMERIYP-VSQSHTATGRITFTEPNIQNVPRDFEIKMPTLVGE 2400
Query: 635 -----------------------------QGRLIRKA--------------FVPSEDNAV 651
Q ++ +A FVP ++
Sbjct: 2401 SPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSI 2460
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
L++DYSQ+ELR+LAH+S D LI GAD+ S A IE PE+V + R+ AK
Sbjct: 2461 -LAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE-PESVGDDLRQQAKQ 2518
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
+ +GI+YG+ L +GI A YID++ RY GI +M V+ K G+V+T+
Sbjct: 2519 ICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTIL 2578
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD-------KGGY 824
RRR LP I N + AER AIN+ +QGSAADI+KIA +N+ + L+ G+
Sbjct: 2579 GRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGH 2638
Query: 825 KSKML--------------------------LQVHDEIVLEVPNEEIGAIRELVTKTMES 858
+ ML LQ+HDE++ EV E++ + ++V MES
Sbjct: 2639 REGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVVEEDVVQVAQIVKNEMES 2698
Query: 859 AISLSVPLIADENAGETWYEAK 880
A+ LSV L G +W E K
Sbjct: 2699 AVKLSVKLKVKVKIGASWGELK 2720
>gi|29832769|ref|NP_827403.1| putative DNA polymerase I
[Streptomyces avermitilis MA-4680]
gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces
avermitilis MA-4680]
Length = 907
Score = 206 bits (524), Expect = 2e-51
Identities = 113/285 (39%), Positives = 173/285 (60%), Gaps = 10/285 (3%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+L+L+DG S+A+RAFFAL + F +G TNAIYGF ML + L P+H VAFD
Sbjct: 19 RLMLMDGHSLAYRAFFAL--PAENFTTATGQPTNAIYGFASMLANTLRDEAPTHFAVAFD 76
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
+ T+R+E + +YK R+KTPDEF+ Q I + LD + + + ++ +EADDII TLA
Sbjct: 77 VSRKTWRSEEFTEYKANRSKTPDEFKGQVELIGELLDAMHAQRFAVDGFEADDIIATLAT 136
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
QAEA E F++ +V+GD+D QL +T V KGV+E FTP + EK G+TP+Q+
Sbjct: 137 QAEA--EGFEVLIVTGDRDSFQLVSDHTTVLYPTKGVSELTRFTPEKVFEKYGLTPAQYP 194
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D AL GD SDN+PG+ +GEKT K ++++GS + E ++ +K K+ +NL + E
Sbjct: 195 DFAALRGDPSDNLPGIPGVGEKTAAKWINQFGSFAELVERVDEVK-GKVGQNLRDHLESV 253
Query: 246 FLSKTLATI--NIASPITIGLEDILYSGPQDIKALSQFYDEMDFK 288
L++ L + ++ P ++ L P D A++ D ++ +
Sbjct: 254 KLNRRLTEMVRDVELPKSVA---ALERAPYDRTAVAMVLDTLEIR 295
>gi|25028011|ref|NP_738065.1| putative DNA polymerase I
[Corynebacterium efficiens YS-314]
gi|23493294|dbj|BAC18265.1| putative DNA polymerase I
[Corynebacterium efficiens YS-314]
Length = 945
Score = 206 bits (523), Expect = 2e-51
Identities = 117/281 (41%), Positives = 165/281 (58%), Gaps = 6/281 (2%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+LIDG S+AFRAFFAL + F G +TNA+YGF ML +L QPSHI VAFD
Sbjct: 63 LMLIDGHSMAFRAFFAL--PAENFSTTGGQNTNAVYGFLSMLATLLKEEQPSHIAVAFDV 120
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
G+ TFRT+++ DYK R TP EF+ Q ++ L LGI E E YEADDII TLA
Sbjct: 121 GRKTFRTDLFPDYKAQREATPPEFKGQVEILKDVLKTLGITTIEKEDYEADDIIATLAVA 180
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
A+ +D +V+GD+D QL + T V +GV+ FTP + EK G+TPSQ+ D
Sbjct: 181 AKPLG--YDTLIVTGDRDSFQLVNDTTTVLYPMRGVSVLHRFTPEAVEEKYGLTPSQYPD 238
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAF 246
AL GD SDN+P + +GEKT K + EYGSL+ + E+ + +K K + +Q
Sbjct: 239 FAALRGDPSDNLPNIPGVGEKTATKWIVEYGSLDNLLEHADEIK-GKAGNSFRERLDQVR 297
Query: 247 LSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
+++ L + + +G +D L G D+ ++ +D ++F
Sbjct: 298 MNRKLTEMIKDMELPVGPDD-LEMGTADVAEVATEFDALEF 337
>gi|6226811|sp|O75417|DPOQ_HUMAN DNA polymerase theta (DNA polymerase
eta)
gi|3510695|gb|AAC33565.1| DNA polymerase theta [Homo sapiens]
Length = 1762
Score = 201 bits (510), Expect = 6e-50
Identities = 193/682 (28%), Positives = 301/682 (43%), Gaps = 129/682 (18%)
Query: 322 DFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQEALFKKALSK-PIKTYDFKRS 379
D YYF + + H E + + D ++ + LQ L K++ + + YDF +S
Sbjct: 1083 DAYYFSLQKEQKHSEISASLVPPSLDPSLTLKDRMWYLQSCLRKESDKECSVVIYDFIQS 1142
Query: 380 -KVLLNRFNIDLPEPAFDTRLAKYLL--STTEDNLVSTIAR-LYTNLPL----DTDDAVY 431
K+LL I L + D ++A +LL + E L S + L LPL +T +
Sbjct: 1143 YKILLLSCGISLEQSYEDPKVACWLLDPDSQEPTLHSIVTSFLPHELPLLEGMETSQGIQ 1202
Query: 432 GKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLF-EMEQPLANVLAKM 490
G R+ A +L+ + N + L E + +F ++E P LA +
Sbjct: 1203 SLGLNAGSEHSGRY---RASVESILIFNSMNQLNSLLQKENLQDVFRKVEMPSQYCLALL 1259
Query: 491 EIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLP--- 547
E+ GI Q ++ + + Y+LAG F+ S + ++LF L LP
Sbjct: 1260 ELNGIGFSTAECESQKHIMQAKLDAIETQAYQLAGHSFSFTSSDDIAEVLFLELKLPPNR 1319
Query: 548 -----------------VEMTKKTKTG--YSTAVDVLERLAPISPLVTKILEYRQITKLQ 588
++ +K + G +ST+ DVL +L + PL ILE+R+IT
Sbjct: 1320 EMKNQGSKKTLGSTRRGIDNGRKLRLGRQFSTSKDVLNKLKALHPLPGLILEWRRITNAI 1379
Query: 589 STYIIGLQ-----DYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE--------- 634
+ + LQ + L +I+ Q T TGR++ ++PN+QN+P E
Sbjct: 1380 TKVVFPLQREKCLNPFLGMERIYP-VSQSHTATGRITFTEPNIQNVPRDFEIKMPTLVGE 1438
Query: 635 -----------------------------QGRLIRKA--------------FVPSEDNAV 651
Q ++ +A FVP ++
Sbjct: 1439 SPPSQAVGKGLLPMGRGKYKKGFSVNPRCQAQMEERAADRGMPFSISMRHAFVPFPGGSI 1498
Query: 652 LLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKA 711
L++DYSQ+ELR+LAH+S D LI GAD+ S A IE PE+V + R+ AK
Sbjct: 1499 -LAADYSQLELRILAHLSHDRRLIQVLNTGADVFRSIAAEWKMIE-PESVGDDLRQQAKQ 1556
Query: 712 VNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLF 771
+ +GI+YG+ L +GI A YID++ RY GI +M V+ K G+V+T+
Sbjct: 1557 ICYGIIYGMGAKSLGEQMGIKENDAACYIDSFKSRYTGINQFMTETVKNCKRDGFVQTIL 1616
Query: 772 HRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLD-------KGGY 824
RRR LP I N + AER AIN+ +QGSAADI+KIA +N+ + L+ G+
Sbjct: 1617 GRRRYLPGIKDNNPYRKAHAERQAINTIVQGSAADIVKIATVNIQKQLETFHSTFKSHGH 1676
Query: 825 KSKML--------------------------LQVHDEIVLEVPNEEIGAIRELVTKTMES 858
+ ML LQ+HDE++ EV E++ + ++V MES
Sbjct: 1677 REGMLQSDRTGLSRKRKLQGMFCPIRGGFFILQLHDELLYEVVEEDVVQVAQIVKNEMES 1736
Query: 859 AISLSVPLIADENAGETWYEAK 880
A+ LSV L G +W E K
Sbjct: 1737 AVKLSVKLKVKVKIGASWGELK 1758
>gi|30019729|ref|NP_831360.1| 5'-3' exonuclease [Bacillus cereus
ATCC 14579]
gi|29895274|gb|AAP08561.1| 5'-3' exonuclease [Bacillus cereus ATCC
14579]
Length = 288
Score = 196 bits (497), Expect = 2e-48
Identities = 111/284 (39%), Positives = 172/284 (60%), Gaps = 10/284 (3%)
Query: 6 KLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K+LL+DG ++ FRAF+A +Y Q K G TN I+G+ L ++P+HI+
Sbjct: 3 KVLLVDGMALLFRAFYATSVYGQF--MKRQDGTPTNGIHGYMKHLLTATQAIEPTHIVTC 60
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
+D G TTFRTE +++YK RA P+E QF +++ L I ++ YEADD IGTL
Sbjct: 61 WDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSIPVIGMKGYEADDCIGTL 120
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AKQ NE ++ +++GD DL+QL D N V + +KG+ +E +TP +ME+ G+ P Q
Sbjct: 121 AKQ--YCNEA-EVYILTGDTDLLQLVDKNVTVMLLRKGIGNYEYYTPERIMEEKGVEPWQ 177
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ KA MGD SDN PGV IGEKT KL+ E+G++ + EN+E++ +++ + + +D E
Sbjct: 178 IVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVSAVLENVESLTKAQ-RTKIESDLE 236
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
+S LA I+ PI+ LE+ L++ D + L +EM++
Sbjct: 237 NLNISLQLAQIHCEVPISCLLEEGLHT--MDEEKLRFVCEEMNW 278
>gi|21399498|ref|NP_655483.1| 53EXOc, 5'-3' exonuclease [Bacillus
anthracis A2012]
gi|30261677|ref|NP_844054.1| 5'-3' exonuclease family protein
[Bacillus anthracis str. Ames]
gi|30255905|gb|AAP25540.1| 5'-3' exonuclease family protein
[Bacillus anthracis str. Ames]
Length = 288
Score = 194 bits (492), Expect = 8e-48
Identities = 105/267 (39%), Positives = 164/267 (61%), Gaps = 8/267 (2%)
Query: 6 KLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K+LL+DG ++ FRAF+A +Y Q K G TN I+G+ L + ++P+HI+
Sbjct: 3 KVLLVDGMALLFRAFYATSVYGQF--MKRQDGTPTNGIHGYMKHLLTAMQAIEPTHIVTC 60
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
+D G TTFRTE +++YK RA P+E QF +++ L + ++ YEADD IGTL
Sbjct: 61 WDMGSTTFRTESFSNYKANRAAPPEELIPQFDLVQEMTAKLSVPVIGMKGYEADDCIGTL 120
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AKQ NE ++ +++GD DL+QL D N V + +KG+ +E +TP +ME+ G+ P Q
Sbjct: 121 AKQ--YCNEA-EVYILTGDTDLLQLVDKNVTVMLLRKGMGNYEYYTPEKIMEEKGVEPWQ 177
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ KA MGD SDN PGV IGEKT KL+ E+G++ + EN+ ++ +++ + + +D E
Sbjct: 178 IVHAKAFMGDTSDNYPGVKGIGEKTAYKLIQEHGTVATVLENVASLTKAQ-RTKIESDLE 236
Query: 244 QAFLSKTLATINIASPITIGLEDILYS 270
+S LA I+ PI+ LE+ L++
Sbjct: 237 NLNISLQLAQIHCEVPISCSLEEGLHT 263
>gi|23099156|ref|NP_692622.1| 5'-3' exonuclease [Oceanobacillus
iheyensis HTE831]
gi|22777384|dbj|BAC13657.1| 5'-3' exonuclease [Oceanobacillus
iheyensis HTE831]
Length = 290
Score = 193 bits (490), Expect = 1e-47
Identities = 108/287 (37%), Positives = 168/287 (57%), Gaps = 12/287 (4%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NK+LL+DG ++ FR FFA + + + G+ TN +Y F L + + +P+H++ +
Sbjct: 4 NKVLLVDGMALLFRGFFATSFRGNFMYTSKGVPTNGVYQFLRYLMDSVQKFEPTHVICCW 63
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
D G TFRTE++A YK R + P E QF +++ ++ + + LE++EADD IGTLA
Sbjct: 64 DMGSKTFRTELFAGYKANRDEPPKELIPQFDLVKEVVEAFNMPNIGLENFEADDCIGTLA 123
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
NE +TV++GD+DL+QL N + I +KG +E F EK G++P Q
Sbjct: 124 HAYSLENE---VTVLTGDQDLLQLVKENIRIAIMRKGQGNYEVFDQDNFYEKKGLSPKQI 180
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK---QSKMKENLIND 241
IDLK LMGD SDN PGV IGEKT +KLL EY +++ + NIE + Q+K+ NL
Sbjct: 181 IDLKGLMGDSSDNYPGVKGIGEKTAIKLLQEYETIDDLLNNIEKLPKGVQAKINANL--- 237
Query: 242 KEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK 288
+ LS++LA I PI+ L+ ++ +++ + +E++FK
Sbjct: 238 -DMLHLSRSLAEIKCDVPISCSLDTSEWN--VNLETATNKLNELEFK 281
>gi|23021107|ref|ZP_00060794.1| hypothetical protein [Clostridium
thermocellum ATCC 27405]
Length = 640
Score = 192 bits (489), Expect = 2e-47
Identities = 148/430 (34%), Positives = 220/430 (50%), Gaps = 32/430 (7%)
Query: 478 EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQ-EFNIN-SPKQ 535
E+E P + + M+ GI V K+ + + E + I ++ +EI + G E N S
Sbjct: 212 EVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIVSIRKEIAGIIGNVEIGANASTSA 271
Query: 536 LGKLLFETLGLPVEMTKKTKTGYSTAVD------VLERLAPISPLVTKIL----EYRQIT 585
K LF LGLPV KT + A D + E A P + ++ EYR+
Sbjct: 272 FKKYLFVDLGLPV---MKTTAKHQEAADDETMILLKEWCATNRPELVRLFELVQEYRKWG 328
Query: 586 KLQSTYIIGLQDYILED-GKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFV 644
KL+STYI G +I ED G+IH + T+TGR +S +PN+QN P + +RK F+
Sbjct: 329 KLKSTYIDGYLRFIDEDTGRIHPDLMPLGTETGRFASRNPNMQNCPQKDNDPIGVRK-FI 387
Query: 645 PSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPN 704
+ VLLS D+SQIELRV A +D+ ++ ++ G DIH T ++ I E N
Sbjct: 388 IAPAGKVLLSLDFSQIELRVGAFYCRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKN 447
Query: 705 -----DRRN-AKAVNFGIVYGISDFGLSHNL----GIPRKLA--KQYIDTYFERYPGIKN 752
+RR AK NFG+ YG+ GL L GI LA + I YPG+
Sbjct: 448 APHYKERRTIAKNCNFGVFYGLFPTGLQRTLKFKAGINPTLAECETIIQNLKSGYPGLAK 507
Query: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812
+ + V + A Y ET RRR L I S ++ + FAER A+N+PIQG+AADILK+A
Sbjct: 508 WQDEVKKRAAVSCYSETWLGRRRYLLGIRSSDWGKKSFAERCALNTPIQGTAADILKLAC 567
Query: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESA--ISLSVPLIADE 870
+ L + + M LQ+HDE+V E+P +++ + + ME+ + VP++A+
Sbjct: 568 GRIISGLPERLWLKPM-LQIHDELVFELPEDKVDEAVVFIKECMETQPFPAFDVPIVAEA 626
Query: 871 NAGETWYEAK 880
+ G + E K
Sbjct: 627 SVGRNFGEMK 636
>gi|16801060|ref|NP_471328.1| similar to 5'-3' exonuclease [Listeria
innocua]
gi|25331626|pir||AH1681 5'-3' exonuclease homolog lin1994
[imported] - Listeria innocua (strain Clip11262)
gi|16414495|emb|CAC97224.1| lin1994 [Listeria innocua]
Length = 290
Score = 190 bits (483), Expect = 8e-47
Identities = 108/275 (39%), Positives = 157/275 (56%), Gaps = 10/275 (3%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILV 62
N+ LL++DG ++ FRAF+A N G+ TN + GF + + + P+H L+
Sbjct: 4 NRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQGFMRHMFAAIRQSNPTHTLI 63
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
+D G TFR E+Y YK GR P+E QF ++ G + + +EADD IGT
Sbjct: 64 CWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEADDCIGT 123
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
+ QA +S TV+SGDKDL+QL V I +KG ++ + A E+MGITP
Sbjct: 124 ITVQASSS---ISTTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYNEATFFEEMGITPK 180
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK---QSKMKENLI 239
QFID+KALMGD SD PGV IGEKT +KL+ E+ S+EG+ N++ +K Q K++E+L
Sbjct: 181 QFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIEGVLNNLDKLKPAQQLKIQEDL- 239
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQD 274
LS+ LA I+ P+ + L + Y+G +D
Sbjct: 240 ---AMLELSQKLAKIHTEVPLEMNLASLKYNGFRD 271
>gi|32043063|ref|ZP_00140325.1| hypothetical protein [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 185
Score = 190 bits (482), Expect = 1e-46
Identities = 89/181 (49%), Positives = 130/181 (71%)
Query: 699 ENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVV 758
E+V+ + RR+AKA+NFG++YG+S FGL+ +G+ RK A+ YID YF RYPG+ YME
Sbjct: 4 EDVSGDQRRSAKAINFGLIYGMSAFGLAKQIGVERKEAQAYIDRYFARYPGVLAYMERTR 63
Query: 759 REAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRV 818
+A ++G+VETLF RR LP+I+S+N +R+ AERTAIN+P+QG+AADI+K AM+ +D
Sbjct: 64 AQAAEQGFVETLFGRRLYLPEIHSKNGAMRKAAERTAINAPMQGTAADIMKRAMVAVDNW 123
Query: 819 LDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYE 878
L + G ++++LQVHDE+VLEV + + +RE + M A +L VPL+ + G W E
Sbjct: 124 LQESGLDARVILQVHDELVLEVREDLVEQVREGIRPLMSGAATLDVPLVVEAGVGSNWDE 183
Query: 879 A 879
A
Sbjct: 184 A 184
>gi|16803920|ref|NP_465405.1| similar to 5'-3' exonuclease [Listeria
monocytogenes EGD-e]
gi|25331628|pir||AI1309 5'-3' exonuclease homolog lmo1881
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16411334|emb|CAC99959.1| lmo1881 [Listeria monocytogenes]
Length = 290
Score = 187 bits (476), Expect = 5e-46
Identities = 107/272 (39%), Positives = 154/272 (56%), Gaps = 10/272 (3%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILV 62
N+ LL++DG ++ FRAF+A N G+ TN + GF + + + P+H L+
Sbjct: 4 NRENLLVVDGMALLFRAFYATAVSKQFMFNQQGIPTNGVQGFMRHMFAAIRQSNPTHTLI 63
Query: 63 AFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
+D G TFR E+Y YK GR P+E QF ++ G + + +EADD IGT
Sbjct: 64 CWDMGSQTFRNELYDGYKAGRTAPPEEMIPQFDLAKEVAAGFGFVNLGVPGFEADDCIGT 123
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
+ QA + TV+SGDKDL+QL V I +KG ++ + A E+MGI+P
Sbjct: 124 ITVQASNT---IATTVLSGDKDLLQLIAPTNDVWIMQKGYGNYKRYDEATFFEEMGISPR 180
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK---QSKMKENLI 239
QFID+KALMGD SD PGV IGEKT +KL+ EY S+EG+ N++ +K Q+K++E+L
Sbjct: 181 QFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEYESIEGVLNNLDKLKPAQQTKIQEDL- 239
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSG 271
LS+ LA I+ P+ I L + Y G
Sbjct: 240 ---AMLELSQKLARIHTEVPLEIDLPSLKYDG 268
>gi|16079259|ref|NP_390083.1| similar to 5'-3' exonuclease [Bacillus
subtilis]
gi|1730895|sp|P54161|EX53_BACSU Probable 5'-3' exonuclease
gi|7451690|pir||H69933 5'-3' exonuclease homolog ypcP - Bacillus
subtilis
gi|1256623|gb|AAA96617.1| exodeoxyribonuclease [Bacillus subtilis]
gi|2634620|emb|CAB14118.1| ypcP [Bacillus subtilis subsp. subtilis
str. 168]
Length = 296
Score = 187 bits (476), Expect = 6e-46
Identities = 110/274 (40%), Positives = 164/274 (59%), Gaps = 16/274 (5%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRV---QPSH 59
N NKLLL+DG ++ FRAFFA + N+SG+ TN + GF L H++ V QP+H
Sbjct: 2 NNNKLLLVDGMALLFRAFFATAVHRNFMINDSGVPTNGVNGF---LKHLITAVETFQPTH 58
Query: 60 ILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDI 119
++ +D G T+R +++ DYK R+ P E QF ++ LGI + YEADD
Sbjct: 59 VVCCWDMGSKTYRNDLFQDYKANRSAPPVELIPQFDLAKEAAAELGIMNIGFAGYEADDC 118
Query: 120 IGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGI 179
IGTLA +NE DITVV+GD+DL+QL V + +KG+ ++ +T E+ G+
Sbjct: 119 IGTLADL--FANEA-DITVVTGDRDLLQLLTDKVSVALLQKGIGNYKVYTKETFYEETGV 175
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAM---KQSKMKE 236
P ID+KALMGD SDN PGV IGEKT KL+ EY +++ + EN+ + +Q K+++
Sbjct: 176 MPKALIDIKALMGDSSDNYPGVKGIGEKTAYKLIREYETIDRLLENLSLLPKGQQGKIQQ 235
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYS 270
L +D E +S+ LA I+ + P+ L+D L++
Sbjct: 236 GL-SDLE---MSRKLAEIHCSVPLACTLKDALFT 265
>gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease
and polymerase domains [Corynebacterium glutamicum ATCC
13032]
Length = 905
Score = 186 bits (471), Expect = 2e-45
Identities = 106/281 (37%), Positives = 164/281 (57%), Gaps = 6/281 (2%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+LIDG S+AFRAFFAL + F + G TNA+YGF ML+ +L QP+H+ VAFD
Sbjct: 25 LMLIDGHSMAFRAFFAL--PAENFSTSGGQATNAVYGFLSMLSTLLKDEQPTHVAVAFDV 82
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
G+ TFRT+M+ YK R TP EF+ Q +++ L LGI E +EADD+I TL+
Sbjct: 83 GRKTFRTDMFPAYKAQREATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLSVA 142
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
A+ F +V+GD+D QL + T V KGV+ FTP + EK G+TP Q+ +
Sbjct: 143 AKPLG--FKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPE 200
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAF 246
AL GD SDN+P + +GEKT K +++Y +L+ + ++ + +K K+ +L EQ
Sbjct: 201 FAALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIK-GKVGASLRERIEQVR 259
Query: 247 LSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
+++ L + + +G +D P + ++ +D+++F
Sbjct: 260 MNRKLTEMVKDLELPLGPDDFEMK-PVQVAEVAAKFDDLEF 299
>gi|15924430|ref|NP_371964.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|15927021|ref|NP_374554.1| hypothetical protein, similar to 5'-3'
exonuclease [Staphylococcus aureus subsp. aureus N315]
gi|25331624|pir||H89921 hypothetical protein SA1273 [imported] -
Staphylococcus aureus (strain N315)
gi|13701238|dbj|BAB42533.1| SA1273 [Staphylococcus aureus subsp.
aureus N315]
gi|14247211|dbj|BAB57602.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
Length = 292
Score = 186 bits (471), Expect = 2e-45
Identities = 100/257 (38%), Positives = 155/257 (59%), Gaps = 6/257 (2%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NK+LL+DG ++ FR F+A N+ G+ TN I GF + + ++P+H+ V +
Sbjct: 3 NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIRPTHVAVCW 62
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
D G++TFR +M+ YK R+ P+E QF Y+++ + G + +++YEADD+IGTLA
Sbjct: 63 DMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVIGTLA 122
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
+Q N D+ +++GDKDL+Q + N V + KKG + +T E+ + P Q
Sbjct: 123 QQYSTDN---DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQQL 179
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK-E 243
ID+KA MGD +D GV IGEKT +KL+ +Y S+E + ENI+A+ S + N IND +
Sbjct: 180 IDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDAL--SAGQRNKINDNLD 237
Query: 244 QAFLSKTLATINIASPI 260
+ +LSK LA I+ PI
Sbjct: 238 ELYLSKRLAEIHTQVPI 254
>gi|21283058|ref|NP_646146.1| ORFID:MW1329~hypothetical protein,
similar to 5'-3' exonuclease [Staphylococcus aureus
subsp. aureus MW2]
gi|21204497|dbj|BAB95194.1| MW1329 [Staphylococcus aureus subsp.
aureus MW2]
Length = 292
Score = 185 bits (470), Expect = 2e-45
Identities = 100/257 (38%), Positives = 155/257 (59%), Gaps = 6/257 (2%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAF 64
NK+LL+DG ++ FR F+A N+ G+ TN I GF + + ++P+H+ V +
Sbjct: 3 NKILLVDGMALLFRHFYATSLHKQFMYNSQGVPTNGIQGFVRHIFSAIHEIRPTHVAVCW 62
Query: 65 DAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
D G++TFR +M+ YK R+ P+E QF Y+++ + G + +++YEADD+IGTLA
Sbjct: 63 DMGQSTFRNDMFDGYKQNRSAPPEELIPQFDYVKEISEQFGFVNIGVKNYEADDVIGTLA 122
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQF 184
+Q N D+ +++GDKDL+Q + N V + KKG + +T E+ + P Q
Sbjct: 123 QQYSTDN---DVYIITGDKDLLQCINDNVEVWLIKKGFNIYNRYTLHRFNEEYALEPQQL 179
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK-E 243
ID+KA MGD +D GV IGEKT +KL+ +Y S+E + ENI+A+ S + N IND +
Sbjct: 180 IDIKAFMGDTADGYAGVKGIGEKTAIKLIQQYQSVENVVENIDAL--SAGQRNKINDNLD 237
Query: 244 QAFLSKTLATINIASPI 260
+ +LSK LA I+ PI
Sbjct: 238 ELYLSKRLAEIHTQVPI 254
>gi|30685835|ref|NP_188690.2| DNA polymerase -related [Arabidopsis
thaliana]
Length = 1030
Score = 185 bits (470), Expect = 3e-45
Identities = 123/337 (36%), Positives = 185/337 (54%), Gaps = 20/337 (5%)
Query: 556 TGYSTAVDVL---ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYV 610
+ Y TA D E + + E I L S +I+ LQ + +DG++H
Sbjct: 702 SAYGTAFDAFGGGESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLN 761
Query: 611 QDLTQTGRLSSSDPNLQNIPVRLEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHIS 669
+ T+TGRLS+ PNLQN P LE+ R IR+AF+ S N+ L+ +DY Q+ELR+LAH++
Sbjct: 762 IN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIASPGNS-LIVADYGQLELRILAHLA 818
Query: 670 KDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNL 729
E + AF G D H+ TAM ++ + E V +RR AK +NF I YG + GLS +
Sbjct: 819 SCESMKEAFIAGGDFHSRTAMNMYPHIR-EAVENGERRKAKMLNFSIAYGKTAIGLSRDW 877
Query: 730 GIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQ 789
+ R+ A+ ++ ++ ++ + E +EA KGYV TL R R P+ SR +
Sbjct: 878 KVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQKGYVLTLLGRARKFPEYRSR--AQKN 935
Query: 790 FAERTAINSPIQGSAADILKIAMINL--DRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGA 847
ER AIN+P+QGSAAD+ AM+ + ++ L + G+ K+LLQVHDE++LE P+E
Sbjct: 936 HIERAAINTPVQGSAADVAMCAMLEISNNQRLKELGW--KLLLQVHDEVILEGPSESAEN 993
Query: 848 IRELVTKTMESAIS----LSVPLIADENAGETWYEAK 880
+++V M + LSV L D + WY K
Sbjct: 994 AKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYAGK 1030
>gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium
glutamicum ATCC 13032]
Length = 880
Score = 184 bits (466), Expect = 9e-45
Identities = 105/280 (37%), Positives = 163/280 (57%), Gaps = 6/280 (2%)
Query: 8 LLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDAG 67
+LIDG S+AFRAFFAL + F + G TNA+YGF ML+ +L QP+H+ VAFD G
Sbjct: 1 MLIDGHSMAFRAFFAL--PAENFSTSGGQATNAVYGFLSMLSTLLKDEQPTHVAVAFDVG 58
Query: 68 KTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQA 127
+ TFRT+M+ YK R TP EF+ Q +++ L LGI E +EADD+I TL+ A
Sbjct: 59 RKTFRTDMFPAYKAQREATPPEFKGQVEILKEVLSTLGITTIEKIDFEADDVIATLSVAA 118
Query: 128 EASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFIDL 187
+ F +V+GD+D QL + T V KGV+ FTP + EK G+TP Q+ +
Sbjct: 119 KPLG--FKTLIVTGDRDSFQLVNDTTTVLYPMKGVSVLHRFTPEAVEEKYGLTPRQYPEF 176
Query: 188 KALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAFL 247
AL GD SDN+P + +GEKT K +++Y +L+ + ++ + +K K+ +L EQ +
Sbjct: 177 AALRGDPSDNLPNIPGVGEKTATKWIAQYETLDNLLDHADEIK-GKVGASLRERIEQVRM 235
Query: 248 SKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
++ L + + +G +D P + ++ +D+++F
Sbjct: 236 NRKLTEMVKDLELPLGPDDFEMK-PVQVAEVAAKFDDLEF 274
>gi|28572629|ref|NP_789409.1| DNA polymerase I [Tropheryma whipplei
TW08/27]
gi|28410761|emb|CAD67147.1| DNA polymerase I [Tropheryma whipplei
TW08/27]
Length = 356
Score = 183 bits (465), Expect = 1e-44
Identities = 107/278 (38%), Positives = 163/278 (58%), Gaps = 9/278 (3%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+L+L+DG S+AFR+F+ +G+ NA+YGF L +L SH VAFD
Sbjct: 10 RLILVDGHSLAFRSFYG----TKAIAVVNGVQVNALYGFVNRLTQLLESGPVSHFAVAFD 65
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
+ +FRTE Y +YKG R K P+EF Q I++ L ++G+ H+ +++YEADDII TL++
Sbjct: 66 VSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEFLHLIGVNHFAVQNYEADDIIATLSR 125
Query: 126 QAEASNEHF-DITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A E F D+ ++SGD+DLIQL + +++ S K F +TP +M++ GI P
Sbjct: 126 L--ALEEGFSDVRILSGDRDLIQLVNNKVSLLFFSAKHRLGFAVYTPEAVMDRYGIEPHV 183
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ D+ AL+G+ SDN+PG+ KIGEKT LL +YG L+ I E+ + + +N+ ND
Sbjct: 184 YPDMAALVGESSDNLPGIKKIGEKTATTLLQKYGCLQKIIESRWEI-SGVVGQNIRNDYH 242
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQF 281
A ++ L T+ P+ + D+ SG D K L F
Sbjct: 243 VALRNRKLNTLVNDLPLPASVSDLSLSGEIDTKKLEGF 280
>gi|28493259|ref|NP_787420.1| DNA polymerase I [Tropheryma whipplei
str. Twist]
gi|28476300|gb|AAO44389.1| DNA polymerase I [Tropheryma whipplei
str. Twist]
Length = 356
Score = 183 bits (465), Expect = 1e-44
Identities = 107/283 (37%), Positives = 164/283 (57%), Gaps = 9/283 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
+ +L+L+DG S+AFR+F+ +G+ NA+YGF L +L SH
Sbjct: 5 LDQSKRLILVDGHSLAFRSFYG----TKAIAVVNGVQVNALYGFVNRLTQLLESGPVSHF 60
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
VAFD + +FRTE Y +YKG R K P+EF Q I++ L ++G+ H+ +++YEADDII
Sbjct: 61 AVAFDVSRKSFRTEAYPEYKGTRKKVPEEFFPQVDLIKEFLHLIGVNHFAVQNYEADDII 120
Query: 121 GTLAKQAEASNEHF-DITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMG 178
TL++ A E F D+ ++SGD+DLIQL + +++ S K F +TP +M++ G
Sbjct: 121 ATLSRL--ALEEGFSDVRILSGDRDLIQLVNNKVSLLFFSAKHRLGFAVYTPEAVMDRYG 178
Query: 179 ITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENL 238
I P + D+ AL+G+ SDN+PG+ KIGEKT LL +YG L+ I E+ + + +N+
Sbjct: 179 IEPHVYPDMAALVGESSDNLPGIKKIGEKTATTLLQKYGCLQKIIESRWEI-SGVVGQNI 237
Query: 239 INDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQF 281
ND A ++ L T+ P+ + D+ SG D K L F
Sbjct: 238 RNDYHVALRNRKLNTLVNDLPLPASVSDLSLSGEIDTKKLEGF 280
>gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120]
gi|25288542|pir||AC1963 DNA polymerase I [imported] - Nostoc sp.
(strain PCC 7120)
gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120]
Length = 977
Score = 182 bits (463), Expect = 2e-44
Identities = 116/336 (34%), Positives = 182/336 (53%), Gaps = 15/336 (4%)
Query: 2 TNKNKLLLIDGSSVAFRAFFALYNQID-RFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
T + +L+DG S+AFR++FA D + +G+ T+ +GF L ++ QP +
Sbjct: 12 TTRPTFILVDGHSLAFRSYFAFAKGRDGGLRTKTGIPTSVCFGFLKSLLEVMATQQPQAM 71
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
+AFD G TFR E YK R TP++F + + L+ + Y YEADD++
Sbjct: 72 AIAFDLGLPTFRHEADDTYKADRPGTPEDFVPDLKNLHELLEGFNLPIYTAPGYEADDVL 131
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTN---TVVEIS----KKGVAEFEEFTPAYL 173
GTLA++A A E + + +++GD+DL QL D TV+ S K+ E + +
Sbjct: 132 GTLAQKATA--EGYKVKILTGDRDLFQLVDPEKEITVLNFSPDALKRSTNSITEVSTEQV 189
Query: 174 MEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSK 233
E++G+ P+Q +D KAL GDKSDNIPGV IGEKT ++LLS YGSL+G+Y+ + +K +
Sbjct: 190 KERLGVLPTQVVDFKALCGDKSDNIPGVRGIGEKTAVQLLSTYGSLDGVYKALNEIKGAT 249
Query: 234 MKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAA 293
K+ L KE A S+ LA I + P+ + LED G D L ++++F +F +
Sbjct: 250 QKK-LAEGKEDAAKSQFLAKIVVDVPLEVNLEDCKLVG-FDESLLIPILEKLEFTRFLSQ 307
Query: 294 LGE---ETSQEDFEVDFTEVEQLKTEMFSDNDFYYF 326
+ + E TE ++T F D+D ++
Sbjct: 308 INDLQLRFGGTVVETPKTETSAIETTNFEDDDIAFY 343
>gi|31198797|ref|XP_308346.1| ENSANGP00000019077 [Anopheles gambiae]
gi|30178668|gb|EAA04696.2| ENSANGP00000019077 [Anopheles gambiae str.
PEST]
Length = 1624
Score = 182 bits (461), Expect = 3e-44
Identities = 135/436 (30%), Positives = 212/436 (47%), Gaps = 51/436 (11%)
Query: 480 EQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAG-QEFNINSPKQLGK 538
E P+ LA E+ G V + L + + + + + +E +L G Q + S + + K
Sbjct: 1193 EMPVQLALASAEVIGFPVDRERLAALIAQLKACRDRIAEEARKLNGNQRLDFGSSRAVAK 1252
Query: 539 LLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDY 598
L G + T VLERL SPL ++ YR+I + I L
Sbjct: 1253 ALRLAGG-------NDRKQCRTVRQVLERLE--SPLAALVIAYRKIESNLTRTIEPLYRI 1303
Query: 599 ILE-DGKIHTRYVQDLTQTGRLSSSDPNLQ------NIPVRLEQGRLI-----------R 640
+ ++H R T TGR++ +PNLQ +P RL +G R
Sbjct: 1304 VRPGSNRVHGRSFC-FTSTGRITMHEPNLQTVVKDFTVPARLTEGGGGGGDAPPPLFSCR 1362
Query: 641 KAFVPSEDNA--VLLSSDYSQIELRVLAHISKDEHLIAAFKEG-----------ADIHTS 687
F S+ + VLLS+D+ Q+EL +L H+S+D L+AA G +D+ +
Sbjct: 1363 STFACSDPDGGTVLLSADFCQLELSILTHLSQDPQLMAALGGGGNEAPGRTEARSDVFRA 1422
Query: 688 TAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERY 747
A R E+ +V+ R KA+ +G++YG+ ++ L + A+ ++ + Y
Sbjct: 1423 LAARWNHYERESDVSDELRNRTKAIVYGVIYGMGVRAMAAELQLDEDAARTLMEQFHATY 1482
Query: 748 PGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADI 807
P I+ Y+E VVR + GY+ETL RRR LP I S N R AER A+ + IQGSAADI
Sbjct: 1483 PEIRRYIERVVRLTRQLGYIETLTGRRRHLPAITSENARERSEAERQAVCTTIQGSAADI 1542
Query: 808 LKIAMINLDRVLDKGGYKS-------KMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAI 860
LK A++ + R L K Y++ + +L +HDE++ EVP ++ I +++ +ME+
Sbjct: 1543 LKNAIVRMRRNLRK--YRNVLELERIRFVLHMHDELIYEVPRSQLHKIAKILKSSMENCA 1600
Query: 861 SLSVPLIADENAGETW 876
LSVPL AG +W
Sbjct: 1601 KLSVPLRVKLKAGPSW 1616
>gi|22330154|ref|NP_175498.2| DNA polymerase A family protein -related
[Arabidopsis thaliana]
Length = 1050
Score = 181 bits (459), Expect = 5e-44
Identities = 131/374 (35%), Positives = 195/374 (52%), Gaps = 51/374 (13%)
Query: 551 TKKTKT-------GYSTAVDVL---ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL 600
T+K+KT Y TA ER + + E I L S +I+ LQ +
Sbjct: 684 TQKSKTDDETDTSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 743
Query: 601 --EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRL-IRKAFVPSEDNAVLLSSDY 657
+DG++H + T+TGRLS+ PNLQN P LE+ R IRKAFV S N L+ +DY
Sbjct: 744 SGKDGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRKAFVASPGN-TLVVADY 800
Query: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVF--------------------GIEK 697
Q+ELR+LAH++ + ++ AFK G D H+ TAM ++ G +K
Sbjct: 801 GQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDK 860
Query: 698 P-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752
P ++ ++RR AK +NF I YG + GLS + + K A++ +D ++ ++
Sbjct: 861 PPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRK 920
Query: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812
+ E +EA + GYV TL R R P SR R +R AIN+P+QGSAAD+ AM
Sbjct: 921 WQEMRKKEAIEDGYVLTLLGRSRRFPASKSR--AQRNHIQRAAINTPVQGSAADVAMCAM 978
Query: 813 --INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAIS----LSVPL 866
I++++ L K G+ ++LLQ+HDE++LE P E +++V M + LSV L
Sbjct: 979 LEISINQQLKKLGW--RLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDL 1036
Query: 867 IADENAGETWYEAK 880
D + WY AK
Sbjct: 1037 SVDAKCAQNWYAAK 1050
>gi|18087568|gb|AAL58915.1|AF462826_1 At1g50840/F8A12_8 [Arabidopsis
thaliana]
gi|20259545|gb|AAM13892.1| putative DNA polymerase A family protein
[Arabidopsis thaliana]
Length = 1049
Score = 181 bits (459), Expect = 5e-44
Identities = 131/374 (35%), Positives = 195/374 (52%), Gaps = 51/374 (13%)
Query: 551 TKKTKT-------GYSTAVDVL---ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL 600
T+K+KT Y TA ER + + E I L S +I+ LQ +
Sbjct: 683 TQKSKTDDETDTSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 742
Query: 601 --EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRL-IRKAFVPSEDNAVLLSSDY 657
+DG++H + T+TGRLS+ PNLQN P LE+ R IRKAFV S N L+ +DY
Sbjct: 743 SGKDGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRKAFVASPGN-TLVVADY 799
Query: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVF--------------------GIEK 697
Q+ELR+LAH++ + ++ AFK G D H+ TAM ++ G +K
Sbjct: 800 GQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDK 859
Query: 698 P-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752
P ++ ++RR AK +NF I YG + GLS + + K A++ +D ++ ++
Sbjct: 860 PPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRK 919
Query: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812
+ E +EA + GYV TL R R P SR R +R AIN+P+QGSAAD+ AM
Sbjct: 920 WQEMRKKEAIEDGYVLTLLGRSRRFPASKSR--AQRNHIQRAAINTPVQGSAADVAMCAM 977
Query: 813 --INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAIS----LSVPL 866
I++++ L K G+ ++LLQ+HDE++LE P E +++V M + LSV L
Sbjct: 978 LEISINQQLKKLGW--RLLLQIHDEVILEGPIESAEIAKDIVVDCMSKPFNGRNILSVDL 1035
Query: 867 IADENAGETWYEAK 880
D + WY AK
Sbjct: 1036 SVDAKCAQNWYAAK 1049
>gi|23017878|ref|ZP_00057600.1| hypothetical protein [Thermobifida
fusca]
Length = 929
Score = 181 bits (459), Expect = 6e-44
Identities = 94/217 (43%), Positives = 137/217 (62%), Gaps = 4/217 (1%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+LLL+DG S+AFRAF+AL ++F N++G TNAIYGF ML +L QP+HI VA+D
Sbjct: 34 RLLLVDGHSMAFRAFYAL--PAEKFVNSAGQATNAIYGFTSMLVKLLREEQPTHIAVAWD 91
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
+ TFR E YA+YK GR++TP EF Q +++ L ++G+ + YEADDII TL
Sbjct: 92 RSEPTFRHEEYAEYKAGRSETPPEFPSQVGLLQELLGLIGVTSLSVPGYEADDIIATLTT 151
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
+ A E D+ + SGD+D QL + V + +++ TP + K + P ++
Sbjct: 152 RGLA--EGMDVLIASGDRDTFQLVGEHCTVLYPGRSLSDLIRMTPEAVEAKYAVPPERYC 209
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGI 222
DL AL+G+KSDN+PGV +G KT K L++YGSL+ +
Sbjct: 210 DLAALVGEKSDNLPGVPGVGPKTAAKWLAKYGSLDAL 246
>gi|27414159|gb|AAO12053.1| mitochondrial DNA polymerase A
[Dictyostelium discoideum]
Length = 1369
Score = 181 bits (458), Expect = 7e-44
Identities = 120/333 (36%), Positives = 184/333 (55%), Gaps = 33/333 (9%)
Query: 575 VTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLE 634
+ +LE I L +T+II LQ + ++HT + T+TGRLSS PNLQN P LE
Sbjct: 1043 INALLELGSIGTLLNTFIIPLQKLADSNSRLHTS-INVNTETGRLSSKKPNLQNQPA-LE 1100
Query: 635 QGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVF 693
+ R IRKAF E L+ +DY Q+ELR+LAHI+ + +I AF+ G D H+ TAM ++
Sbjct: 1101 KDRYKIRKAFT-CEPGNTLIVADYGQLELRLLAHITNCKSMITAFQVGGDFHSRTAMGMY 1159
Query: 694 -----GIEKPE-----------------NVTPNDRRNAKAVNFGIVYGISDFGLSHNLGI 731
I++ E NV ++RR AK +NF I YG + GLS + G+
Sbjct: 1160 PHVKEAIDRGEVLLEWDGEGEPPKPLLKNVYASERRKAKTLNFSIAYGKTAHGLSQDWGV 1219
Query: 732 PRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFA 791
AK+ ++ ++E P + + + A G+ TL R R LPDI N ++ A
Sbjct: 1220 TLNEAKETLNRWYEDRPEVLVWQRKTIETAHKYGWTRTLMGRYRQLPDIKG-NKGMKGHA 1278
Query: 792 ERTAINSPIQGSAADILKIAM--INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIR 849
ER +IN+P+QG AADI+ AM I ++ L + G+ K+++Q+HDE++LE P + R
Sbjct: 1279 ERASINTPLQGGAADIVMKAMLIIEDNKRLKELGF--KLIMQIHDELILEGPEQHADEAR 1336
Query: 850 ELVTKTMESAIS--LSVPLIADENAGETWYEAK 880
++ M + ++ L + L+ D +TWY+AK
Sbjct: 1337 SIMMNLMSNPLTTPLLIDLVVDCRYAKTWYDAK 1369
Score = 141 bits (355), Expect = 6e-32
Identities = 99/340 (29%), Positives = 172/340 (50%), Gaps = 39/340 (11%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQP-SHILV 62
K +LIDG+ +A++A N N G++ N +YGF + ++ ++P I+V
Sbjct: 271 KKHTVLIDGTLMAYKA-----NATTPSLTNEGMNVNVLYGFMRSMLKVIDELKPIDSIVV 325
Query: 63 AFD-AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIG 121
FD G ++FR ++Y +YK R TP E +Q I + D + + +++ YE DD++
Sbjct: 326 CFDPKGGSSFRRDLYPEYKSNRPPTPPELLQQLLLIPEVTDSINVAFTKVDGYECDDLLA 385
Query: 122 TLAKQAEAS-------NEHFD-------------ITVVSGDKDLIQLTDTNTVVEISKKG 161
T +K A N+ +D +T+V+ DKD+ QL + N V +++G
Sbjct: 386 TYSKLATQEGNKFIEGNDQYDPTHPESNRFNGSQVTIVTDDKDIYQLVNDNVSVYSTRRG 445
Query: 162 VAEFEEFTPAYLMEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEG 221
+++K G P++F+ ++L+GDK DNIPG+ +IGEKT ++ ++G+L
Sbjct: 446 ----SMVDKQGVIDKFGFEPNKFVTFQSLIGDKVDNIPGIPRIGEKTATDIIKKFGNLNS 501
Query: 222 IYENIEAMKQSKMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQF 281
I ENI+ + Q K E + + +Q +S LA +N I + L+DI Y P D F
Sbjct: 502 IIENIDQLPQ-KFIEPIRSSIDQLRISYQLAKLNDNVSINLNLDDIKYK-PIDRTKFYNF 559
Query: 282 YDEMDFKQFKAALGEETSQEDFEVDFTEVEQLKTEMFSDN 321
D+ +F K +S E F++ +++ T + N
Sbjct: 560 LDKYNFTSIK------SSVEKLNKLFSDNQEITTSTSTTN 593
>gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein
A [Trypanosoma brucei]
Length = 958
Score = 181 bits (458), Expect = 8e-44
Identities = 148/533 (27%), Positives = 233/533 (42%), Gaps = 106/533 (19%)
Query: 433 KGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEI 492
KG+K A+ + ++E L + + + S + LK ++ ++ + + +E+
Sbjct: 419 KGSKEAVSHRVFYMEPLYRMLYGRLGSHGLLPAFLKQEKRISIMCAAMKLNGFYVNLVEV 478
Query: 493 RGIKVK-KNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETLGLPVEMT 551
G K + + ++ E + +I ++T FNI S L+E L L +
Sbjct: 479 DGFKARCAEKMEKLRSEARSMIPSMTN---------FNIQSADDCRVALYEVLKLGPNLV 529
Query: 552 KKTKTG--------------YSTAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQD 597
K G ST+ + L LA ++ YR++ KL TY++G +
Sbjct: 530 SKGTEGSTENNSLILTRGGKLSTSEETLRILARHHEFPRILIAYRKLAKLLQTYVVGFME 589
Query: 598 YI--LEDG-----------------------------KIHTRYVQDLTQTGRLSSSDPNL 626
+E+G K+H VQ+ T+TGRL+S +PN+
Sbjct: 590 MAIPIEEGDGEFTDFSISEQGKEAIPNASDRHKAKWAKLHPNLVQEGTETGRLTSVEPNM 649
Query: 627 QNI--------------------------------------------PVRLEQGRLIRKA 642
Q + PV+ ++ IR+
Sbjct: 650 QALPRSTQLVATHEKNNTNDADSENGNNENINGDVNAADAGGNESDGPVQEKEVSFIRRC 709
Query: 643 F-VPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENV 701
VP D L+S DY Q+ELRVLAH+S D LI+ + DIH S A +F + +V
Sbjct: 710 LGVP--DGYSLVSLDYEQVELRVLAHLSGDSALISVLTKSGDIHRSIAEIIF---RKTSV 764
Query: 702 TPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREA 761
T +R AK V FGI+YG GL+ +G+ + A + + +P + Y ++ +
Sbjct: 765 TGEERSLAKKVVFGILYGAGPRGLAQQMGVSVEQALRVSSLFKSCFPTVDAYQRRIIDQC 824
Query: 762 KDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR-VLD 820
+ G V TL R RS+PDIN R R AER A N+ +QGSAAD++K+ MI ++R VL
Sbjct: 825 RSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIAVEREVLQ 884
Query: 821 KGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAG 873
++LLQVHDEI+L VPN + +I ISL VPL+ G
Sbjct: 885 PHAPDVRLLLQVHDEIILSVPNHMLHSIVPAAMHAFAHPISLLVPLLVTTKVG 937
>gi|30313818|gb|AAO34128.1| PolI-like DNA polymerase [Arabidopsis
thaliana]
Length = 1034
Score = 180 bits (457), Expect = 8e-44
Identities = 125/362 (34%), Positives = 189/362 (51%), Gaps = 44/362 (12%)
Query: 556 TGYSTAVDVL---ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYV 610
+ Y TA D E + + E I L S +I+ LQ + +DG++H
Sbjct: 680 SAYGTAFDAFGGGESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLN 739
Query: 611 QDLTQTGRLSSSDPNLQNIPVRLEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHIS 669
+ T+TGRLS+ PNLQN P LE+ R IR+AF+ S N+ L+ +DY Q+ELR+LAH++
Sbjct: 740 IN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIASPGNS-LIVADYGQLELRILAHLA 796
Query: 670 KDEHLIAAFKEGADIHTSTAMRVF--------------------GIEKP-----ENVTPN 704
E + AF G D H+ TAM ++ G EKP ++ +
Sbjct: 797 SCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFAS 856
Query: 705 DRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDK 764
+RR AK +NF I YG + GLS + + R+ A+ ++ ++ ++ + E +EA K
Sbjct: 857 ERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQK 916
Query: 765 GYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINL--DRVLDKG 822
GYV TL R R P+ SR + ER AIN+P+QGSAAD+ AM+ + ++ L +
Sbjct: 917 GYVLTLLGRARKFPEYRSR--AQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKEL 974
Query: 823 GYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAIS----LSVPLIADENAGETWYE 878
G+ K+LLQVHDE++LE P+E +++V M + LSV L D + WY
Sbjct: 975 GW--KLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNWYA 1032
Query: 879 AK 880
K
Sbjct: 1033 GK 1034
>gi|23336563|ref|ZP_00121774.1| hypothetical protein
[Bifidobacterium longum DJO10A]
Length = 269
Score = 180 bits (456), Expect = 1e-43
Identities = 96/243 (39%), Positives = 143/243 (58%), Gaps = 5/243 (2%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
LL++DG S+AFRAFFAL +D F +SG TNA++GF ML ++ +P H+ VAFD
Sbjct: 14 LLVVDGHSLAFRAFFAL--PVDNFSTSSGQATNAVWGFATMLAQVIDAEKPDHLGVAFDV 71
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR EM YKG R P+E Q P I++ L LG+ + E +E DD+I TLA
Sbjct: 72 KGGTFRNEMLPQYKGTREAAPEELLTQLPLIQRMLTALGVTYIEKPGFEGDDVIATLATM 131
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
+ + H V+SGD+D QL D N V + + TP +++K +TP+Q+ D
Sbjct: 132 GDKAGYH--TLVLSGDRDAFQLVDDNVTVLYPGHHFKDLKHMTPQSIIDKYKVTPAQYPD 189
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAF 246
L AL G+ +DNIPGV +G+ K ++++GSL+GI E+ + + K E+L + +Q
Sbjct: 190 LAALRGETADNIPGVPGVGDGFAAKWINQFGSLDGICEHADEIG-GKKGESLRANIDQVK 248
Query: 247 LSK 249
L++
Sbjct: 249 LNR 251
>gi|461960|sp|P30314|DPOL_BPSP1 DNA polymerase
Length = 924
Score = 177 bits (448), Expect = 9e-43
Identities = 114/346 (32%), Positives = 184/346 (52%), Gaps = 14/346 (4%)
Query: 525 GQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQI 584
G + N S KQLG+LLFE +GL + K ST D L+ + S V ++E+R+
Sbjct: 498 GDKINFGSTKQLGELLFERMGLETVIFTD-KGAPSTNDDSLKFMGSQSDFVKVLMEFRKA 556
Query: 585 TKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFV 644
L + ++ L I D +H Y T TGRLSS++PN Q P ++ L + F
Sbjct: 557 NHLYNNFVSKLSLMIDPDNIVHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPTLFQYNFE 616
Query: 645 PSE-------DNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
+ D V++ DYSQ+ELR+L + I ++ GAD+H + A FG+
Sbjct: 617 IKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGV-A 675
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNL-----GIPRKLAKQYIDTYFERYPGIKN 752
E V+ + R +K + FGIVY S GLS +L + + +I YF+R+P +
Sbjct: 676 IEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFIKKYFKRFPKVSK 735
Query: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812
++ + KD V+TL R+LPDI+S + + AER A+N+PIQG+ +D +++
Sbjct: 736 WIRDTKKHVKDISTVKTLTGATRNLPDIDSIDQSKANEAERQAVNTPIQGTGSDCTLMSL 795
Query: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMES 858
I +++ L + G +S++ + VHD IVL+ P +E+ + + V ME+
Sbjct: 796 ILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKKVKHIMEN 841
>gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira
hyodysenteriae]
Length = 920
Score = 177 bits (448), Expect = 1e-42
Identities = 110/290 (37%), Positives = 167/290 (56%), Gaps = 10/290 (3%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K L+ID + +R F + N+ G + ++I GF ++ ++ +A
Sbjct: 2 KKTFLIIDAFGILYRYHFIFLKR--PLLNSKGQNVSSINGFMRTYFSLINTYPAEYVAIA 59
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
D+ + TFR E+Y +YK R PD+ R Q P + +D LGI L++YEADDI+GT+
Sbjct: 60 LDSSRKTFRNEIYKEYKENRESMPDDLRSQIPILYNLIDALGISRIVLDNYEADDIVGTI 119
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A++ + E+ + S DKD++QL D + V S K E E+ + EK G+ P+Q
Sbjct: 120 AERNK--KENIKTIIYSPDKDILQLVDDDVKVVASNKD-NELMEYDAQAVKEKRGVYPNQ 176
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
IDL +LMGD SDNIPGV +GEKT LKLL EY SL+GIYENI+++K K++E L+ K+
Sbjct: 177 IIDLLSLMGDASDNIPGVKGVGEKTALKLLEEYKSLDGIYENIDSIK-GKIQEKLLESKD 235
Query: 244 QAFLSKTLATI--NIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFK 291
A++S LATI NI + +I S +I +++ DE++ KQ +
Sbjct: 236 MAYMSYKLATIERNIEG-FNLDYNEIA-SSKINIDEVNKILDELELKQIR 283
>gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania
major]
Length = 931
Score = 176 bits (447), Expect = 1e-42
Identities = 111/288 (38%), Positives = 156/288 (53%), Gaps = 21/288 (7%)
Query: 605 IHTRYVQDLTQTGRLSSSDPNLQNIPVR-----------LEQGRL----IRKAFVPSEDN 649
+H ++Q+ T TGRLS +PNLQN+P E G R+ FV + D
Sbjct: 632 LHPNFLQEGTDTGRLSCVEPNLQNLPRNGITAAVAGNDAEEDGEEDLLGFRRCFVAT-DG 690
Query: 650 AVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNA 709
VLLS DY QIELRVLAH+ D L+ A ADIH + A VF K + V+ +RR A
Sbjct: 691 CVLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVF---KKKPVSTEERRLA 747
Query: 710 KAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVET 769
K V FG++YG L+ ++G+ A +PGI Y V+ EA+ G+V T
Sbjct: 748 KRVVFGLLYGAGPKTLATHMGVTVDRALHITSLLANAFPGIDAYQRRVIEEARTNGFVRT 807
Query: 770 LFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKS--K 827
L R R LPDI S + R +AER A NS +QGSAAD++K+AM+ + + + + +S
Sbjct: 808 LSGRLRYLPDIRSTVLSRRSYAERQAFNSVVQGSAADVMKMAMLAVSKEVLQRYDRSDVS 867
Query: 828 MLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGET 875
+L Q+HDE+V V E + + LV+ M A+ L VPL G++
Sbjct: 868 LLSQIHDEMVFMVRKELLPMVVPLVSSAMSHAMQLLVPLSVTAKFGDS 915
>gi|3913510|sp|O52225|DPO1_THEFI DNA polymerase I, thermostable (TFI
polymerase 1)
gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus
filiformis]
Length = 833
Score = 176 bits (447), Expect = 1e-42
Identities = 105/300 (35%), Positives = 166/300 (55%), Gaps = 18/300 (6%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
++LL+DG +A+R F+AL R G +YGF L L + ++V FD
Sbjct: 13 RVLLVDGHHLAYRTFYALSLTTSR-----GEPVQMVYGFARSLLKAL-KEDGQAVVVVFD 66
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
A +FR E Y YK GRA TP++F Q +++ +D+LG+ E YEADD++GTLAK
Sbjct: 67 AKAPSFRHEAYEAYKAGRAPTPEDFPRQLALVKRLVDLLGLVRLEAPGYEADDVLGTLAK 126
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
+AE E ++ +++GD+D QL V + + TP + EK G+ P +++
Sbjct: 127 KAE--REGMEVRILTGDRDFFQLLSEKVSVLLPDGTLV-----TPKDVQEKYGVPPERWV 179
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D +AL GD+SDNIPGV IGEKT L+LL+E+GS+E + +N++ +K ++ + E
Sbjct: 180 DFRALTGDRSDNIPGVAGIGEKTALRLLAEWGSVENLLKNLDRVKPDSLRRKIEAHLEDL 239
Query: 246 FLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF----KQFKAALGEETSQE 301
LS LA I P+ + + + P D++ L F +E++F +F GE+ +E
Sbjct: 240 HLSLDLARIRTDLPLEVDFKALRRRTP-DLEGLRAFLEELEFGSLLHEFGLLGGEKPREE 298
>gi|11994141|dbj|BAB01162.1| contains similarity to DNA polymerase
I~gene_id:K10D20.8 [Arabidopsis thaliana]
Length = 1088
Score = 176 bits (445), Expect = 2e-42
Identities = 123/358 (34%), Positives = 187/358 (51%), Gaps = 44/358 (12%)
Query: 556 TGYSTAVDVL---ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL--EDGKIHTRYV 610
+ Y TA D E + + E I L S +I+ LQ + +DG++H
Sbjct: 645 SAYGTAFDAFGGGESGKEACHAIAALCEVCSIDSLISNFILPLQGSNVSGKDGRVHCSLN 704
Query: 611 QDLTQTGRLSSSDPNLQNIPVRLEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHIS 669
+ T+TGRLS+ PNLQN P LE+ R IR+AF+ S N+ L+ +DY Q+ELR+LAH++
Sbjct: 705 IN-TETGRLSARRPNLQNQPA-LEKDRYKIRQAFIASPGNS-LIVADYGQLELRILAHLA 761
Query: 670 KDEHLIAAFKEGADIHTSTAMRVF--------------------GIEKP-----ENVTPN 704
E + AF G D H+ TAM ++ G EKP ++ +
Sbjct: 762 SCESMKEAFIAGGDFHSRTAMNMYPHIREAVENGEVLLEWHPQPGQEKPPVPLLKDAFAS 821
Query: 705 DRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDK 764
+RR AK +NF I YG + GLS + + R+ A+ ++ ++ ++ + E +EA K
Sbjct: 822 ERRKAKMLNFSIAYGKTAIGLSRDWKVSREEAQDTVNLWYNDRQEVRKWQELRKKEAIQK 881
Query: 765 GYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINL--DRVLDKG 822
GYV TL R R P+ SR + ER AIN+P+QGSAAD+ AM+ + ++ L +
Sbjct: 882 GYVLTLLGRARKFPEYRSR--AQKNHIERAAINTPVQGSAADVAMCAMLEISNNQRLKEL 939
Query: 823 GYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAIS----LSVPLIADENAGETW 876
G+ K+LLQVHDE++LE P+E +++V M + LSV L D + W
Sbjct: 940 GW--KLLLQVHDEVILEGPSESAENAKDIVVNCMSEPFNGKNILSVDLSVDAKCAQNW 995
>gi|93621|pir||JC1269 DNA-directed DNA polymerase (EC 2.7.7.7) -
phage SPO1
gi|216114|gb|AAA03732.1| DNA polymerase
Length = 924
Score = 175 bits (444), Expect = 3e-42
Identities = 114/346 (32%), Positives = 183/346 (51%), Gaps = 14/346 (4%)
Query: 525 GQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQI 584
G + N S KQLG+LLFE +GL + K ST D L+ + S V ++E+R
Sbjct: 498 GDKINFGSTKQLGELLFERMGLETVIFTD-KGAPSTNDDSLKFMGSQSDFVKVLMEFRNG 556
Query: 585 TKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFV 644
L + ++ L I D +H Y T TGRLSS++PN Q P ++ L + F
Sbjct: 557 NHLYNNFVSKLSLMIDPDNIVHPSYNIHGTVTGRLSSNEPNAQQFPRKVNTPTLFQYNFE 616
Query: 645 PSE-------DNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEK 697
+ D V++ DYSQ+ELR+L + I ++ GAD+H + A FG+
Sbjct: 617 IKKMFNSRFGDGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGV-A 675
Query: 698 PENVTPNDRRNAKAVNFGIVYGISDFGLSHNL-----GIPRKLAKQYIDTYFERYPGIKN 752
E V+ + R +K + FGIVY S GLS +L + + +I YF+R+P +
Sbjct: 676 IEEVSKDQRTASKKIQFGIVYQESARGLSEDLRAEGITMSEDECEIFIKKYFKRFPKVSK 735
Query: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812
++ + KD V+TL R+LPDI+S + + AER A+N+PIQG+ +D +++
Sbjct: 736 WIRDTKKHVKDISTVKTLTGATRNLPDIDSIDQSKANEAERQAVNTPIQGTGSDCTLMSL 795
Query: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMES 858
I +++ L + G +S++ + VHD IVL+ P +E+ + + V ME+
Sbjct: 796 ILINQWLRESGLRSRICITVHDSIVLDCPKDEVLEVAKKVKHIMEN 841
>gi|27468048|ref|NP_764685.1| putative 5'-3' exonuclease
[Staphylococcus epidermidis ATCC 12228]
gi|27315593|gb|AAO04727.1|AE016747_224 putative 5'-3' exonuclease
[Staphylococcus epidermidis ATCC 12228]
Length = 292
Score = 174 bits (442), Expect = 5e-42
Identities = 94/257 (36%), Positives = 152/257 (58%), Gaps = 8/257 (3%)
Query: 6 KLLLIDGSSVAFRAFFA--LYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
++LL+DG ++ FR F+A L+NQ N+ G+ TN I GF + + ++P+H+ V
Sbjct: 4 RVLLVDGMALLFRHFYATSLHNQF--MYNSKGIPTNGIQGFVRHIFSAIKEIEPTHVAVC 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
+D G+ TFR EMY YK R PDE QF Y+++ G + +YEADDIIG+L
Sbjct: 62 WDMGQETFRNEMYDGYKQNRPAPPDELIPQFDYVKEISHQFGFVNVGKRNYEADDIIGSL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AE ++ ++ +++GD+DL+Q + N V + KKG ++ +T +++ G+ P Q
Sbjct: 122 ---AETYSQEHEVYIITGDRDLLQCINHNVEVWLIKKGFTIYQRYTLDRFIDEYGLNPQQ 178
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
ID+KA MGD +D GV IGEKT +KL+ +G++E + N+ ++ ++ K+ + N+
Sbjct: 179 LIDVKAFMGDTADGYSGVKGIGEKTAIKLIQNHGTVENVVNNLSSLTPAQQKK-ITNNLN 237
Query: 244 QAFLSKTLATINIASPI 260
LSK+LA I PI
Sbjct: 238 HLHLSKSLAEIYTKVPI 254
>gi|27887284|gb|EAA24381.1| DNA polymerase I [Fusobacterium
nucleatum subsp. vincentii ATCC 49256]
Length = 286
Score = 174 bits (440), Expect = 9e-42
Identities = 107/274 (39%), Positives = 162/274 (59%), Gaps = 18/274 (6%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+ +L+D S++ +RA+FA N R KN T A+YGF L I+ +P ++ AFD
Sbjct: 3 RAVLLDVSAIMYRAYFANINF--RTKNEP---TGAVYGFINTLLSIINEFKPDYMAAAFD 57
Query: 66 AGKTTF-RTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLA 124
+++ RTE+Y DYK R TP++ Q P I + LD I Y+++ YEADD++G+LA
Sbjct: 58 VKRSSLKRTEIYGDYKSNRQSTPEDLVTQIPRIEEVLDAFNINRYKIDGYEADDVLGSLA 117
Query: 125 KQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEF----TPAYLMEKMGIT 180
K+ + + ++ +++GDKDL QL + N V + KG E E+F ++ +G+
Sbjct: 118 KK--IAKQDIEVIIITGDKDLSQLVERNISVALLGKG-TEGEKFGILKNSDDVVNYLGVV 174
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQ-----SKMK 235
P + DL L+GDKSD IPGVTKIGEK L + S+Y SLE IYENI+ +K +
Sbjct: 175 PEKIPDLFGLIGDKSDGIPGVTKIGEKKALAIFSQYDSLEKIYENIDNLKNIDGIGPSLI 234
Query: 236 ENLINDKEQAFLSKTLATINIASPITIGLEDILY 269
+NL+N+K+ AF+S+ LA I IT+ + Y
Sbjct: 235 KNLVNEKDIAFMSRELAKIFTDLDITVEDSGLXY 268
>gi|22969182|ref|ZP_00016721.1| hypothetical protein [Rhodospirillum
rubrum]
Length = 403
Score = 173 bits (439), Expect = 1e-41
Identities = 107/297 (36%), Positives = 153/297 (51%), Gaps = 21/297 (7%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT L L+DGS FRA Y+ + G NA+YGF ML +L + H+
Sbjct: 1 MTEPKHLYLVDGSGYIFRA----YHSLPPMTRTDGTPVNAVYGFTAMLMKLLADMDADHL 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD + +FR E+Y YK R P++ QFP IR+ + + E + +EADD+I
Sbjct: 57 AVIFDKARVSFRNEIYPLYKAQRPPPPEDLIPQFPLIREAVRAFNVPCIERDGFEADDLI 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFT-----PAYLME 175
T AK+A A E +TVVS DKDL+QL +GVA F+ PA + E
Sbjct: 117 ATYAKRARA--EGAIVTVVSSDKDLMQLVG---------EGVALFDPMKNRAIGPAEVFE 165
Query: 176 KMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMK 235
K G+ P + ID++AL GD DN+PGV IG KT +L+ EYG LE + +KQ K +
Sbjct: 166 KFGVAPDKVIDVQALAGDAVDNVPGVPGIGVKTAAQLIGEYGDLETLLARAAEIKQPKRR 225
Query: 236 ENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKA 292
++L++ E A +S L + ++ L D + P D + L+ F E F+ A
Sbjct: 226 QSLLDHAEAARISLQLVRLRDDVEVSETLADFATAEP-DAEVLAGFLAENGFRSLLA 281
>gi|22974373|ref|ZP_00020643.1| hypothetical protein [Chloroflexus
aurantiacus]
Length = 315
Score = 173 bits (438), Expect = 1e-41
Identities = 111/288 (38%), Positives = 164/288 (56%), Gaps = 18/288 (6%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+L+DG ++A+RAFFAL +++ G T A++GF +L L +P + VAFD
Sbjct: 6 LVLVDGHALAYRAFFALRES--GLRSSRGEPTYAVFGFAQILLTALAEYRPDYAAVAFDV 63
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
G+ TFR ++YA+YK GRA+TP+EF QF I+Q + L I Y E YEADD+IGTLA+Q
Sbjct: 64 GR-TFRDDLYAEYKAGRAETPEEFYPQFERIKQLVQALNIPIYTAEGYEADDVIGTLARQ 122
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEIS-----KKGVA--EFEEFTPAYLMEKMGI 179
A+ D +++GD D++QL + + V ++ K V + E+ Y G+
Sbjct: 123 --ATERGVDTIILTGDSDVLQLVNDHVRVALANPYGGKTSVTLYDLEQVRKRY----DGL 176
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
P Q DL+ L GD SDNIPGV IGEK + LL ++ SL+ + E I+A + + + L
Sbjct: 177 EPDQLADLRGLKGDTSDNIPGVRGIGEKGAIALLKQFRSLDALLEQIDAAPK-RYQTLLR 235
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
E A S+ LATI P+ + LE G D A+ + E++F
Sbjct: 236 EQAEAARFSRQLATIVTDVPVQLDLEAARI-GVYDRSAVMALFQELEF 282
>gi|16120370|ref|NP_403683.1| DNA polymerase I [Yersinia pestis]
gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM]
gi|25288535|pir||AB0003 DNA-directed DNA polymerase (EC 2.7.7.7)
[imported] - Yersinia pestis (strain CO92)
gi|15978132|emb|CAC88884.1| DNA polymerase I [Yersinia pestis CO92]
gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia
pestis KIM]
Length = 932
Score = 172 bits (436), Expect = 3e-41
Identities = 107/296 (36%), Positives = 158/296 (53%), Gaps = 19/296 (6%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N LLL+DGSS +RA Y+ N SG T A+YG ML +L + +PSH+ V
Sbjct: 6 ENPLLLVDGSSYLYRA----YHAFPPLTNGSGEPTGAMYGVLNMLRSLLLQYRPSHVAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++A+YK R PD+ R Q + Q + +G+ + EADD+IGTL
Sbjct: 62 FDAKGKTFRDELFAEYKSHRPPMPDDLRVQIEPLHQMVKAMGLPLLVVSGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTN-TVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A++AE + + + +GDKD+ QL N T++ + P + +K G+ P
Sbjct: 122 AREAEKAGH--SVLISTGDKDMAQLVTPNITLINTMNNTI-----LGPQDVCDKYGVPPE 174
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQ------SKMKE 236
ID ALMGD SDNIPGV +GEKT LL G L+ ++ N++ + M
Sbjct: 175 LIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLFSNLDKISTLTFRGAKTMSA 234
Query: 237 NLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKA 292
L +K+ A+LS LATI + + +++ S P D K L Q + +FK++ A
Sbjct: 235 KLEQNKDVAYLSYKLATIKTDVELDVTCDELTVSPPDD-KQLHQLFSRYEFKRWLA 289
>gi|1942938|pdb|1TAQ| Structure Of Taq Dna Polymerase
Length = 832
Score = 171 bits (434), Expect = 4e-41
Identities = 106/301 (35%), Positives = 166/301 (54%), Gaps = 16/301 (5%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R F AL + G A+YGF L L + ++V
Sbjct: 11 KGRVLLVDGHHLAYRTFHALKG----LTTSRGEPVQAVYGFAKSLLKAL-KEDGDAVIVV 65
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG+ E+ YEADD++ +L
Sbjct: 66 FDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASL 125
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK+AE E +++ +++ DKDL QL ++ + + +G TPA+L EK G+ P Q
Sbjct: 126 AKKAE--KEGYEVRILTADKDLYQLL-SDRIHVLHPEGYL----ITPAWLWEKYGLRPDQ 178
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ D +AL GD+SDN+PGV IGEKT KLL E+GSLE + +N++ +K + ++E ++ +
Sbjct: 179 WADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMD 237
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
LS LA + P+ + D D + L F + ++F G S +
Sbjct: 238 DLKLSWDLAKVRTDLPLEV---DFAKRREPDRERLRAFLERLEFGSLLHEFGLLESPKAL 294
Query: 304 E 304
E
Sbjct: 295 E 295
>gi|1084022|pir||JX0359 DNA-directed DNA polymerase (EC 2.7.7.7) -
Thermus aquaticus
Length = 831
Score = 171 bits (433), Expect = 5e-41
Identities = 106/301 (35%), Positives = 166/301 (54%), Gaps = 16/301 (5%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R F AL + G A+YGF L L + ++V
Sbjct: 11 KGRVLLVDGHHLAYRTFHALKG----LTTSRGEPVQAVYGFAKSLLKAL-KEDGDAVIVV 65
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG+ E+ YEADD++ +L
Sbjct: 66 FDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASL 125
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK+AE E +++ +++ DKDL QL ++ + + +G TPA+L EK G+ P Q
Sbjct: 126 AKKAE--KEGYEVRILTADKDLYQLL-SDRIHALHPEGYL----ITPAWLWEKYGLRPDQ 178
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ D +AL GD+SDN+PGV IGEKT KLL E+GSLE + +N++ +K + ++E ++ +
Sbjct: 179 WADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMD 237
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
LS LA + P+ + D D + L F + ++F G S +
Sbjct: 238 DLKLSWDLAKVRTDLPLEV---DFAKRREPDRERLRAFLERLEFGSLLHEFGLLESPKAL 294
Query: 304 E 304
E
Sbjct: 295 E 295
>gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus]
Length = 832
Score = 171 bits (433), Expect = 6e-41
Identities = 106/301 (35%), Positives = 166/301 (54%), Gaps = 16/301 (5%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R F AL + G A+YGF L L + ++V
Sbjct: 11 KGRVLLVDGHHLAYRTFHALKG----LTTSRGEPVQAVYGFAKSLLKAL-KEDGDAVIVV 65
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG+ E+ YEADD++ +L
Sbjct: 66 FDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASL 125
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK+AE E +++ +++ DKDL QL ++ + + +G TPA+L EK G+ P Q
Sbjct: 126 AKKAE--KEGYEVRILTADKDLYQLL-SDRIHALHPEGYL----ITPAWLWEKYGLRPDQ 178
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ D +AL GD+SDN+PGV IGEKT KLL E+GSLE + +N++ +K + ++E ++ +
Sbjct: 179 WADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMD 237
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
LS LA + P+ + D D + L F + ++F G S +
Sbjct: 238 DLKLSWDLAKVRTDLPLEV---DFAKRREPDRERLRAFLERLEFGSLLHEFGLLESPKAL 294
Query: 304 E 304
E
Sbjct: 295 E 295
>gi|2098289|pdb|1TAU|A Chain A, Structure Of Dna Polymerase
Length = 832
Score = 170 bits (431), Expect = 8e-41
Identities = 106/301 (35%), Positives = 166/301 (54%), Gaps = 16/301 (5%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R F AL + G A+YGF L L + ++V
Sbjct: 11 KGRVLLVDGHHLAYRTFHALKG----LTTSRGEPVQAVYGFAKSLLKAL-KEDGDAVIVV 65
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG+ E+ YEADD++ +L
Sbjct: 66 FDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASL 125
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK+AE E +++ +++ DKDL QL ++ + + +G TPA+L EK G+ P Q
Sbjct: 126 AKKAE--KEGYEVRILTADKDLYQLL-SDRIHVLHPEGYL----ITPAWLWEKYGLRPDQ 178
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ D +AL GD+SDN+PGV IGEKT KLL E+GSLE + +N++ +K + ++E ++ +
Sbjct: 179 WADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMD 237
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
LS LA + P+ + D D + L F + ++F G S +
Sbjct: 238 DLKLSWDLAKVRTDLPLEV---DFAKRREPDRERLRAFLERLEFGSLLHEFGLLESPKAL 294
Query: 304 E 304
E
Sbjct: 295 E 295
>gi|25405411|pir||D96545 probable DNA polymerase A family protein
[imported] - Arabidopsis thaliana
gi|12321800|gb|AAG50942.1|AC079284_17 DNA polymerase A family
protein, putative [Arabidopsis thaliana]
Length = 1067
Score = 170 bits (431), Expect = 8e-41
Identities = 131/392 (33%), Positives = 195/392 (49%), Gaps = 69/392 (17%)
Query: 551 TKKTKT-------GYSTAVDVL---ERLAPISPLVTKILEYRQITKLQSTYIIGLQDYIL 600
T+K+KT Y TA ER + + E I L S +I+ LQ +
Sbjct: 683 TQKSKTDDETDTSAYGTAYVAFGGGERGKEACHAIASLCEVCSIDSLISNFILPLQGSNV 742
Query: 601 --EDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRL-IRKAFVPSEDNAVLLSSDY 657
+DG++H + T+TGRLS+ PNLQN P LE+ R IRKAFV S N L+ +DY
Sbjct: 743 SGKDGRVHCSLNIN-TETGRLSARRPNLQNQPA-LEKDRYKIRKAFVASPGN-TLVVADY 799
Query: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVF--------------------GIEK 697
Q+ELR+LAH++ + ++ AFK G D H+ TAM ++ G +K
Sbjct: 800 GQLELRILAHLTGCKSMMEAFKAGGDFHSRTAMNMYPHVREAVENGQVILEWHPEPGEDK 859
Query: 698 P-----ENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKN 752
P ++ ++RR AK +NF I YG + GLS + + K A++ +D ++ ++
Sbjct: 860 PPVPLLKDAFGSERRKAKMLNFSIAYGKTAVGLSRDWKVSTKEAQETVDLWYNDRQEVRK 919
Query: 753 YMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM 812
+ E +EA + GYV TL R R P SR R +R AIN+P+QGSAAD+ AM
Sbjct: 920 WQEMRKKEAIEDGYVLTLLGRSRRFPASKSR--AQRNHIQRAAINTPVQGSAADVAMCAM 977
Query: 813 --INLDRVLDKGGYKSKMLL------------------QVHDEIVLEVPNEEIGAIRELV 852
I++++ L K G+ ++LL Q+HDE++LE P E +++V
Sbjct: 978 LEISINQQLKKLGW--RLLLQWSLLDWKLSNKGNLYWKQIHDEVILEGPIESAEIAKDIV 1035
Query: 853 TKTMESAIS----LSVPLIADENAGETWYEAK 880
M + LSV L D + WY AK
Sbjct: 1036 VDCMSKPFNGRNILSVDLSVDAKCAQNWYAAK 1067
>gi|118828|sp|P19821|DPO1_THEAQ DNA polymerase I, thermostable (Taq
polymerase 1)
gi|94709|pir||A33530 DNA-directed DNA polymerase (EC 2.7.7.7) I -
Thermus aquaticus
gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7,
An Inhibitory Fab
gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq
Dna-Polymerase Shows A New Orientation For The
Structure-Specific Nuclease Domain
gi|155129|gb|AAA27507.1| DNA polymerase
Length = 832
Score = 170 bits (431), Expect = 9e-41
Identities = 106/301 (35%), Positives = 166/301 (54%), Gaps = 16/301 (5%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K ++LL+DG +A+R F AL + G A+YGF L L + ++V
Sbjct: 11 KGRVLLVDGHHLAYRTFHALKG----LTTSRGEPVQAVYGFAKSLLKAL-KEDGDAVIVV 65
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA +FR E Y YK GRA TP++F Q I++ +D+LG+ E+ YEADD++ +L
Sbjct: 66 FDAKAPSFRHEAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASL 125
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
AK+AE E +++ +++ DKDL QL ++ + + +G TPA+L EK G+ P Q
Sbjct: 126 AKKAE--KEGYEVRILTADKDLYQLL-SDRIHVLHPEGYL----ITPAWLWEKYGLRPDQ 178
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
+ D +AL GD+SDN+PGV IGEKT KLL E+GSLE + +N++ +K + ++E ++ +
Sbjct: 179 WADYRALTGDESDNLPGVKGIGEKTARKLLEEWGSLEALLKNLDRLKPA-IREKILAHMD 237
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGEETSQEDF 303
LS LA + P+ + D D + L F + ++F G S +
Sbjct: 238 DLKLSWDLAKVRTDLPLEV---DFAKRREPDRERLRAFLERLEFGSLLHEFGLLESPKAL 294
Query: 304 E 304
E
Sbjct: 295 E 295
>gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum
TLS]
gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum
TLS]
Length = 950
Score = 170 bits (430), Expect = 1e-40
Identities = 111/291 (38%), Positives = 155/291 (53%), Gaps = 7/291 (2%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K L L+DG ++ +RAF+AL Q R G+ T A++GF L I+ +P ++ VA
Sbjct: 34 KPGLFLLDGMALVYRAFYAL--QQARMSTRDGVPTGAVFGFATSLLRIIEEYRPDYLAVA 91
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FD+ + TFR E Y YK R PD+ Q IR+ + GI + +EADD+IGT
Sbjct: 92 FDSPEKTFRHEKYKAYKANRPAPPDDLINQLDNIRELIRACGIPLIIMPGFEADDLIGTT 151
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
A++ EA + F +V+ DKD+ QL + K EFE + E+ G P Q
Sbjct: 152 ARKFEADCQVF---IVTPDKDMSQLVHDGVRILKPGKKQNEFELLGSREVAEQFGAPPEQ 208
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKE 243
FIDL L GD SDNIPG IG KT LL +YGSLEGIY NI+A+ K +++L +E
Sbjct: 209 FIDLLTLTGDTSDNIPGAKGIGPKTASSLLKKYGSLEGIYANIDALT-PKTRQSLEAFRE 267
Query: 244 QAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL 294
L + L TI + + LE + S P D +AL +++ K A L
Sbjct: 268 MMPLVRELVTIRTDLDLPLTLEALHASKP-DPEALFALLAKLELKSIAARL 317
>gi|23466822|ref|ZP_00122409.1| hypothetical protein [Haemophilus
somnus 129PT]
Length = 951
Score = 168 bits (426), Expect = 3e-40
Identities = 117/318 (36%), Positives = 168/318 (52%), Gaps = 38/318 (11%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
+N L+L+DGSS +RAF+A N+ G T A+YG ML ++ +VQP+HI V
Sbjct: 6 ENPLVLVDGSSYLYRAFYAF----PPLTNSLGEPTGAMYGVLNMLKSLIAQVQPTHIAVV 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FDA TFR E++ YK R PD+ R+Q + + LGI +E EADD+IGTL
Sbjct: 62 FDAKGKTFRDEIFEQYKSHRPPMPDDLRQQIQPLHNIIKALGIPLLSVEGVEADDVIGTL 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVV-------EISKKGVAEFEEFTPAYLMEK 176
A Q AS + ++ + +GDKD+ QL D N ++ + + GV ++K
Sbjct: 122 AVQ--ASQQGKNVLISTGDKDMAQLVDDNIMLINTMNNSLLDRDGV-----------IDK 168
Query: 177 MGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------ 230
GI P +D ALMGD SDNIPGV+ +GEKT L LL GS+ IY N+E +
Sbjct: 169 YGIPPELIVDYLALMGDSSDNIPGVSGVGEKTALGLLQGIGSMAEIYANLEKVAGLSIRG 228
Query: 231 QSKMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
K+ E L + K A LS LATI + I D L G + L +++ +FK++
Sbjct: 229 AKKLGEKLSSAKADADLSYLLATIKTNVELDI-TPDQLVLGQNNQDQLIEYFARYEFKRW 287
Query: 291 -------KAALGEETSQE 301
+++L + T QE
Sbjct: 288 LNEVISGESSLTKATQQE 305
>gi|17555440|ref|NP_498250.1| dna polymerase i (3G882) [Caenorhabditis
elegans]
gi|7508861|pir||T34469 hypothetical protein W03A3.2 - Caenorhabditis
elegans
gi|2731173|gb|AAB93325.1| Hypothetical protein W03A3.2
[Caenorhabditis elegans]
Length = 1208
Score = 167 bits (422), Expect = 1e-39
Identities = 120/410 (29%), Positives = 212/410 (51%), Gaps = 27/410 (6%)
Query: 478 EMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLG 537
++E + + GI + N + +K IE L + I+ LA +FNI+S ++
Sbjct: 819 QLEMESCQTVLNIFYSGIVFDQALCNSFIYKIRKQIENLEENIWRLAYGKFNIHSSNEVA 878
Query: 538 KLLFETLGLPVEMTKKTKTGYS---TAVDVLERLAPISPLVTKILEYRQITKLQSTYIIG 594
+LF LGL T K T +LE++ P+V KILEYRQI + ++
Sbjct: 879 NVLFYRLGLIYPETSGCKPKLRHLPTNKLILEQMNTQHPIVGKILEYRQIQHTLTQCLMP 938
Query: 595 LQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQ-GRLIRKAFVPSEDNAVLL 653
L +I G+IH + + T TGR+ +S PNLQN+P R+ G R+ F+ + +N +L+
Sbjct: 939 LAKFI---GRIHC-WFEMCTSTGRILTSVPNLQNVPKRISSDGMSARQLFIANSEN-LLI 993
Query: 654 SSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNA-KAV 712
+DY Q+ELRVLAH+S D +L+ D+ +++ N R+A K +
Sbjct: 994 GADYKQLELRVLAHLSNDSNLVNLITSDRDLFEELSIQW-----------NFPRDAVKQL 1042
Query: 713 NFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFH 772
+G++YG+ LS + + A++ + +F +PG+++Y+ + + + T+
Sbjct: 1043 CYGLIYGMGAKSLSELTRMSIEDAEKMLKAFFAMFPGVRSYINETKEKVCKEEPISTIIG 1102
Query: 773 RRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQV 832
RR + S R ER A+N IQGSA++I K A+++++ + + G ++++L +
Sbjct: 1103 RRTIIK--ASGIGEERARIERVAVNYTIQGSASEIFKTAIVDIESKIKEFG--AQIVLTI 1158
Query: 833 HDEIVLEVPNEEIGAIRELVTKTMESAIS--LSVPLIADENAGETWYEAK 880
HDE+++E P + A E + M++A+S L VP+ G +W + K
Sbjct: 1159 HDEVLVECPEIHVAAASESIENCMQNALSHLLRVPMRVSMKTGRSWADLK 1208
>gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii]
Length = 875
Score = 166 bits (421), Expect = 1e-39
Identities = 103/290 (35%), Positives = 152/290 (51%), Gaps = 11/290 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA++A + G A+YGF ML +L +P H+
Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQ----QPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHV 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD+G FR ++Y DYK R P++ Q P +R L E YEADDII
Sbjct: 57 AVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A + A EH + ++S DKDL+QL N + KG + T +++K G T
Sbjct: 117 ATFATKTAALGEH--VVIISSDKDLLQLMTENIKIYDPLKG----KYITEDDVVKKFGTT 170
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
+ ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ +++ + K ++ L N
Sbjct: 171 SDKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRKTLQN 230
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
+E A +S L +N + L ++ +S P K L+ F E F+
Sbjct: 231 SRETALISWQLIGLNSNVDLDFQLNNLEWSPPNSDK-LTGFLQEYGFRSL 279
>gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica]
gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia
sibirica]
Length = 875
Score = 166 bits (419), Expect = 2e-39
Identities = 103/290 (35%), Positives = 151/290 (51%), Gaps = 11/290 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA++A + G A+YGF ML +L +P H+
Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQ----QPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHV 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD+G FR ++Y DYK R P++ Q P +R L E YEADDII
Sbjct: 57 AVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A + A H + ++S DKDL+QL N + KG + T +++K G T
Sbjct: 117 ATFATKTAALGAH--VVIISSDKDLLQLMTENIKIYDPLKG----KYITEDDVVKKFGTT 170
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
+ ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ +++ + K +E L N
Sbjct: 171 SDKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQN 230
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
+E A +S L +N + L ++ +S P K L+ F E F+
Sbjct: 231 SREAALISWQLIGLNSNVDLDFQLNNLEWSPPNSDK-LTGFLQEYGFRSL 279
>gi|15893129|ref|NP_360843.1| DNA polymerase I (POL I) [EC:2.7.7.7]
[Rickettsia conorii]
gi|25288532|pir||F97850 DNA-directed DNA polymerase (EC 2.7.7.7) -
Rickettsia conorii (strain Malish 7)
gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [EC:2.7.7.7]
[Rickettsia conorii]
Length = 875
Score = 166 bits (419), Expect = 2e-39
Identities = 103/290 (35%), Positives = 151/290 (51%), Gaps = 11/290 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA++A + G A+YGF ML +L +P H+
Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQ----QPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHV 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD+G FR ++Y DYK R P++ Q P +R L E YEADDII
Sbjct: 57 AVVFDSGGKNFRHQIYPDYKANRPPPPEDLIIQLPLVRDVASNLNFPILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A + A H + ++S DKDL+QL N + KG + T +++K G T
Sbjct: 117 ATFATKTAALGAH--VVIISSDKDLLQLMTENIKIYDPLKG----KYITEDDVVKKFGTT 170
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
+ ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ +++ + K +E L N
Sbjct: 171 SDKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQN 230
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
+E A +S L +N + L ++ +S P K L+ F E F+
Sbjct: 231 SREAALISWQLIGLNSNVDLDFQLNNLEWSPPNSDK-LTGFLQEYGFRSL 279
>gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia
montanensis]
Length = 875
Score = 166 bits (419), Expect = 2e-39
Identities = 103/290 (35%), Positives = 152/290 (51%), Gaps = 11/290 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA++A + G A+YGF ML +L +P H+
Sbjct: 1 MTQKNTLLLIDGYGFVFRAYYAQ----QPLTSPKGEPVGALYGFTSMLLKLLSDFKPKHV 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD+G FR ++Y DYK R P++ Q P +R L E YEADDII
Sbjct: 57 AVVFDSGGKNFRHQIYPDYKANRPPPPEDLIVQLPLVRDVASNLNFPILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A + A EH + ++S DKDL+QL N + KG + T ++ K G T
Sbjct: 117 ATFATKTAALGEH--VVIISSDKDLLQLMTKNIKIYDPLKG----KYITEDDVVTKFGTT 170
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
++ ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ +++ + K +E L N
Sbjct: 171 SNKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSVKQRETLQN 230
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
+E A +S L ++ + L ++ +S P K L+ F E F+
Sbjct: 231 SREAALISWQLIGLDSNVDLDFQLNNLEWSPPNSDK-LTGFLQEYGFRSL 279
>gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase
[Deinococcus radiodurans]
gi|7404361|sp|P52027|DPO1_DEIRA DNA polymerase I (POL I)
gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase
[Deinococcus radiodurans]
Length = 956
Score = 164 bits (416), Expect = 5e-39
Identities = 100/258 (38%), Positives = 144/258 (55%), Gaps = 14/258 (5%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+LIDG ++AFR++FAL N+ G T+AI GF +L L R + + ++V FD
Sbjct: 49 LVLIDGHALAFRSYFAL----PPLNNSKGEMTHAIVGFMKLLLR-LARQKSNQVIVVFDP 103
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR E Y YK GRA+TP++ Q IR +D LG E YEADD+I +L +
Sbjct: 104 PVKTFRHEQYEGYKSGRAQTPEDLPGQINRIRALVDALGFPRLEEPGYEADDVIASLTRM 163
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
AE +++ +V+ D+D QL D + V + +F PA + EK G+T Q++D
Sbjct: 164 AEGKG--YEVRIVTSDRDAYQLLDEHVKVIAN-----DFSLIGPAQVEEKYGVTVRQWVD 216
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEA--MKQSKMKENLINDKEQ 244
+AL GD SDNIPG IG KT KLL EYG+LE +YE A +K ++ L++ +E
Sbjct: 217 YRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDGTRKKLLDSEEN 276
Query: 245 AFLSKTLATINIASPITI 262
S L+ + P+ I
Sbjct: 277 VKFSHDLSCMVTDLPLDI 294
>gi|19912795|dbj|BAB40805.2| PolI-like DNA polymerase [Oryza sativa]
Length = 976
Score = 164 bits (416), Expect = 5e-39
Identities = 128/400 (32%), Positives = 198/400 (49%), Gaps = 49/400 (12%)
Query: 517 TQEIYEL-AGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVL---ERLAPIS 572
T IY++ GQEF+ + +L LP + + T + Y TA + ++
Sbjct: 590 TDHIYKIDDGQEFDEDG---------SSLELPEQDIEDT-SPYGTAYEAFGGGKKGREAC 639
Query: 573 PLVTKILEYRQITKLQSTYIIGLQ-DYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIP 630
+ + E I KL S +I+ LQ D I ++G+IH + T+TGRLS+ PNLQN P
Sbjct: 640 HAIAALCEVFSIDKLISGFIVPLQGDRISCKEGRIHCSLNIN-TETGRLSARTPNLQNQP 698
Query: 631 VRLEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTA 689
V LE+ R IR AFV + N L+ +DY Q+ELR+LAH++ + ++ AFK G D H+ TA
Sbjct: 699 V-LEKDRYKIRHAFVAAPGN-TLIVADYGQLELRILAHLTNCKSMLEAFKAGGDFHSRTA 756
Query: 690 MRVF--------------------GIEKP-----ENVTPNDRRNAKAVNFGIVYGISDFG 724
M ++ G +KP ++ +RR AK +NF I YG + G
Sbjct: 757 MNMYQHVRDAVEEKKVLLEWHPQPGQDKPPVPLLKDAFGAERRKAKMLNFSIAYGKTAVG 816
Query: 725 LSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRN 784
LS + + + A+ + ++ + + + A +K V TL R R P++
Sbjct: 817 LSWDWKVSVREARDTLKLWYRDRKEVSAWQKKQKAFALEKCEVYTLLGRSRQFPNMTHAG 876
Query: 785 FNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEE 844
+ ER AIN+P+QGSAAD+ AM+ ++R ++LLQVHDE++LE P E
Sbjct: 877 PGQKGHVERAAINAPVQGSAADVAMCAMLEIERNARLKELGWRLLLQVHDEVILEGPTES 936
Query: 845 IGAIRELVTKTMESAIS----LSVPLIADENAGETWYEAK 880
+ +V + M L V L D ++WY AK
Sbjct: 937 AEEAKTIVVECMSKPFYGTNILKVDLAVDAKYAKSWYAAK 976
>gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides
thetaiotaomicron VPI-5482]
gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides
thetaiotaomicron VPI-5482]
Length = 949
Score = 164 bits (415), Expect = 7e-39
Identities = 109/289 (37%), Positives = 159/289 (54%), Gaps = 8/289 (2%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
M + NKL L+D ++ +RA++A + N+ G +T+AI GF L +L + PSHI
Sbjct: 1 MESDNKLFLLDAYALIYRAYYAFIK--NPRINSKGFNTSAILGFVNTLEEVLKKENPSHI 58
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
VAFD TFR E + YK R +TP+ R P I+ + I E+ YEADD+I
Sbjct: 59 GVAFDPSGPTFRHEAFEQYKAQREETPEAIRLSVPIIKDIIHAYRIPILEVAGYEADDVI 118
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGI- 179
GTLA EA + +++ DKD QL T+ V K FE + K I
Sbjct: 119 GTLA--TEAGRQGITTYMMTPDKDYGQLV-TDNVFMYRPKHTGGFEVMGIEEVKAKFDIQ 175
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLI 239
+P+Q ID+ LMGD SDNIPG +GEKT KL++E+GS+E + E+ + +K + +K +
Sbjct: 176 SPAQVIDMLGLMGDASDNIPGCPGVGEKTAQKLIAEFGSIENLLEHTDQLKGA-LKTKVE 234
Query: 240 NDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK 288
+KE SK LATI I PI + + D L D +L Q ++E++F+
Sbjct: 235 TNKELITFSKFLATIKIDVPIQLEM-DKLVREQADEDSLRQIFEELEFR 282
>gi|538888|pir||A40597 DNA-directed DNA polymerase (EC 2.7.7.7) I -
Deinococcus radiodurans (strain R1)
gi|290068|gb|AAC36974.1| DNA polymerase
gi|737486|prf||1922368A DNA polymerase I
Length = 921
Score = 164 bits (415), Expect = 7e-39
Identities = 100/258 (38%), Positives = 144/258 (55%), Gaps = 14/258 (5%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L+LIDG ++AFR++FAL N+ G T+AI GF +L L R + + ++V FD
Sbjct: 14 LVLIDGHALAFRSYFAL----PPLNNSKGEMTDAIVGFMKLLLR-LARQKSNQVIVVFDP 68
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
T R E Y YK GRA+TP++ R Q IR +D LG E YEADD+I +L +
Sbjct: 69 PVKTLRHEQYEGYKSGRAQTPEDLRGQINRIRALVDALGFPRLEEPGYEADDVIASLTRM 128
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
AE +++ +V+ D+D QL D + V + +F PA + EK G+T Q++D
Sbjct: 129 AEGKG--YEVRIVTSDRDAYQLLDEHVKVIAN-----DFSLIGPAQVEEKYGVTVRQWVD 181
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEA--MKQSKMKENLINDKEQ 244
+AL GD SDNIPG IG KT KLL EYG+LE +YE A +K ++ L++ +E
Sbjct: 182 YRALTGDASDNIPGAKGIGPKTAAKLLQEYGTLEKVYEAAHAGTLKPDGTRKKLLDSEEN 241
Query: 245 AFLSKTLATINIASPITI 262
S L+ + P+ I
Sbjct: 242 VKFSHDLSCMVTDLPLDI 259
>gi|15233883|ref|NP_194996.1| DNA polymerase family protein
[Arabidopsis thaliana]
gi|7486403|pir||T04456 hypothetical protein F4D11.100 - Arabidopsis
thaliana
gi|3063700|emb|CAA18591.1| putative protein [Arabidopsis thaliana]
gi|7270174|emb|CAB79987.1| putative protein [Arabidopsis thaliana]
Length = 1548
Score = 164 bits (414), Expect = 9e-39
Identities = 136/452 (30%), Positives = 216/452 (47%), Gaps = 81/452 (17%)
Query: 467 LKANEQEELLFEMEQPLANVLAKMEIRGIKVK-KNTLNEMAIENQKVIETLTQEIYELAG 525
L + E + L +E PL NVLA ME+ GI + + L I K + +L ++ +ELAG
Sbjct: 1115 LVSEELLQALTTIEMPLVNVLADMELWGIGIDIEGCLRARNILRDK-LRSLEKKAFELAG 1173
Query: 526 QEFNINSPKQLGKLLFETLGLPV-EMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQI 584
F++++P + +LF L LP+ E K K ST L+ +L Y +
Sbjct: 1174 MTFSLHNPADIANVLFGQLKLPIPENQSKGKLHPSTDKHCLD-----------LLRYSEW 1222
Query: 585 TKLQSTYIIGLQDYILEDGKIHTRYVQD--------LTQTGRLSSSDPNLQNIPVRLEQG 636
L + I +I++D ++ L + GR SSD + I
Sbjct: 1223 --LIAFPYIAFCFFIIKDNRLFELLSASVEHEVEFKLDKNGRDVSSDADRYKINA----- 1275
Query: 637 RLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKE-GADIHTSTAMRVFGI 695
R FVP+++N +LL++DYSQIELR++AH S+D LI+ + D+ T A + G
Sbjct: 1276 ---RDFFVPTQENWLLLTADYSQIELRLMAHFSRDSSLISKLSQPEGDVFTMIAAKWTG- 1331
Query: 696 EKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYME 755
+ ++V+P+DR K + +GI+YG+ L+ L AK+ I ++ +P + +++
Sbjct: 1332 KAEDSVSPHDRDQTKRLIYGILYGMGANRLAEQLECTSDEAKEKIRSFKSSFPAVTSWLN 1391
Query: 756 TVVREAKDKG--------------------------YVETLFHRRRSLPDINSRNFNIRQ 789
+ ++KG Y++TL RRR L I N +
Sbjct: 1392 ETISFCQEKGWGCYRLFPLLFVLNAVLCVPLNHIFIYIQTLKGRRRFLSKIKFGNAKEKS 1451
Query: 790 FAERTAINSPIQGSAADILKIAMINLDRVLD-------------------KGGYKSKMLL 830
A+R A+NS QGSAADI+KIAMIN+ + KG + ++LL
Sbjct: 1452 KAQRQAVNSMCQGSAADIIKIAMINIYSAIAEDVDTAASSSSSETRFHMLKG--RCRILL 1509
Query: 831 QVHDEIVLEVPNEEIGAIRELVTKTMESAISL 862
QVHDE+VLEV + L+ +ME+A+SL
Sbjct: 1510 QVHDELVLEVDPSYVKLAAMLLQTSMENAVSL 1541
>gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia
rhipicephali]
Length = 875
Score = 162 bits (411), Expect = 2e-38
Identities = 103/290 (35%), Positives = 153/290 (52%), Gaps = 11/290 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA+ Y Q + G A+YGF ML +L +P H+
Sbjct: 1 MTQKNTLLLIDGYGFVFRAY---YTQ-QPLNSPKGEPVGALYGFTSMLLKLLSDFKPQHV 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
V FD+G FR ++Y+DYK R P++ Q P +R L E YEADDII
Sbjct: 57 AVVFDSGGKNFRHQIYSDYKANRPPPPEDLIVQLPLVRDVAGNLNFPILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A + A EH + ++S DKDL+QL + + KG + T +++K G T
Sbjct: 117 ATFATKTAALGEH--VVIISSDKDLLQLMTEHIKIYDPLKG----KYITEDDVVKKFGTT 170
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
+ ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ +++ + K +E L N
Sbjct: 171 SDKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQVSSIKQRETLQN 230
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
+E A +S L ++ + L ++ +S P K L+ F E F+
Sbjct: 231 SREAALISWQLIGLDSNVDLDFQLNNLKWSPPNSDK-LTGFLQEYGFRSL 279
>gi|15606966|ref|NP_214348.1| DNA polymerase I (PolI) [Aquifex
aeolicus]
gi|6015000|sp|O67779|DPO1_AQUAE DNA polymerase I (POL I)
gi|7514773|pir||G70468 DNA polymerase I (PolI) - Aquifex aeolicus
gi|2984205|gb|AAC07735.1| DNA polymerase I (PolI) [Aquifex aeolicus
VF5]
Length = 574
Score = 162 bits (410), Expect = 2e-38
Identities = 171/546 (31%), Positives = 268/546 (48%), Gaps = 62/546 (11%)
Query: 360 EALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLY 419
E L K + I ++ K L R+ I P FDT +A YLL +L ++ L
Sbjct: 59 EPLRKLINERGIVGHNLKFDLKYLYRYGI-FPSATFDTMIASYLLGYERHSLNHIVSNLL 117
Query: 420 TNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELL--- 476
+D GA + ++ + ++ L +++ +L A EELL
Sbjct: 118 -GYSMDKSYQTSDWGASVLSDAQLKYAANDVIVLRELFPKMRDMLNELDAERGEELLKTR 176
Query: 477 ----FEMEQPLANV-------LAKMEIRGIKVK----KNTLNEMAIENQKVIETLTQEIY 521
F+++ P+A V +AK+EI G V N L + E QK I QE Y
Sbjct: 177 TAKIFDLKSPVAIVEMAFVREVAKLEINGFPVDVEELTNKLKAVERETQKRI----QEFY 232
Query: 522 ELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEY 581
+ SPKQL LL T + + K K ST L + P V +LE
Sbjct: 233 --IKYRVDPLSPKQLASLL--TKKFKLNLPKTPKGNVSTDDKALTSYQDVEP-VKLVLEI 287
Query: 582 RQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRK 641
R++ K+ + L+++ L++G+++ + Q TGR+SS+ PN+QNI R +R
Sbjct: 288 RKLKKIADK-LKELKEH-LKNGRVYPEFKQIGAVTGRMSSAHPNIQNI------HRDMRG 339
Query: 642 AFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENV 701
F E N ++ SD+SQIELR+ A KD ++ AFK+G D+H TA V G +K E +
Sbjct: 340 IFKAEEGNTFVI-SDFSQIELRIAAEYVKDPLMLDAFKKGKDMHRYTASVVLG-KKEEEI 397
Query: 702 TPNDRRNAKAVNFGIVYGISDFGLS------HNLGIPRKLAKQYIDTYFERYPGIKNYME 755
T +R+ AKA+NFG++YGIS GL+ + + I + A+ + +F+ + K + +
Sbjct: 398 TKEERQLAKAINFGLIYGISAKGLAEYAKLGYGVEISLEEAQVLRERFFKNFKAFKEWHD 457
Query: 756 TVVREAKDKGYVE--TLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMI 813
V +E K+KG V+ TL RR S N A+N PIQG+ AD+LK+A++
Sbjct: 458 RVKKELKEKGEVKGHTLLGRRFSANTFND------------AVNYPIQGTGADLLKLAVL 505
Query: 814 NLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESA---ISLSVPLIADE 870
D L K G +K++ VHDEIV+E E+ ++E++ K+M++A I VP+ +
Sbjct: 506 LFDANLQKKGIDAKLVNLVHDEIVVECEKEKAEEVKEILEKSMKTAGKIILKEVPVEVES 565
Query: 871 NAGETW 876
E W
Sbjct: 566 VINERW 571
>gi|21672683|ref|NP_660750.1| DNA polymerase I 3'-5' exo domain
[Buchnera aphidicola str. Sg (Schizaphis graminum)]
gi|25008437|sp|Q8K9D0|EX53_BUCAP Probable 5'-3' exonuclease
gi|21623322|gb|AAM67961.1| DNA polymerase I 3'-5' exo domain
[Buchnera aphidicola str. Sg (Schizaphis graminum)]
Length = 287
Score = 162 bits (409), Expect = 4e-38
Identities = 107/274 (39%), Positives = 153/274 (55%), Gaps = 19/274 (6%)
Query: 2 TNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGR-VQPSHI 60
T K ++++DGS +R++F N F +N + AIYG + +IL + I
Sbjct: 4 TKKKPIIIVDGSLYLYRSYFTFQN----FNSNEENPSGAIYGMLKTIQNILNKNYNSKKI 59
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
++ FD+ K FR ++ +YK R+ P++ Q + + L+ +GIK + EADDII
Sbjct: 60 IIIFDSSKKNFRNTIFKEYKSNRSAMPNKLYVQIQPLFKILEEIGIKTLSILGIEADDII 119
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQL-TDTNTVVEISKKGVAEFEEFTPAYLMEKMGI 179
G+LA + E E + +VS DKD+IQL TD V+ ISK + TP + EK GI
Sbjct: 120 GSLAYKLEQKGEQ--VLIVSHDKDMIQLITDNINVLNISKNSI-----LTPEKIQEKYGI 172
Query: 180 TPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE--- 236
P +FIDL ALMGD SDNIPGV KIG KT L LL ++ +++ IY NIE ++ +
Sbjct: 173 YPKEFIDLLALMGDSSDNIPGVPKIGIKTALFLLKKFSNIKNIYNNIEKIQSLPFRNAKN 232
Query: 237 ---NLINDKEQAFLSKTLATINIASPITIGLEDI 267
L N K+ AFLS LA I + PI I E+I
Sbjct: 233 AAIQLKNYKKTAFLSYQLAKIKLDVPINITSEEI 266
>gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacteriophage
phBC6A51]
gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacteriophage
phBC6A51]
gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacteriophage
phBC6A51]
Length = 802
Score = 160 bits (405), Expect = 1e-37
Identities = 171/626 (27%), Positives = 269/626 (42%), Gaps = 119/626 (19%)
Query: 364 KKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLP 423
+K + + Y FK KVL N+ E + + KY+L D L+ + L P
Sbjct: 172 RKLVLDLLDEYLFKNEKVLKIAVNLSF-ETKYAAKYGKYILGKVADPLIMWVRCLQIAAP 230
Query: 424 LDTDD---AVYGKGAKRAIPE----------------KTRFLEHL-AKKVKVLV----DS 459
++ G G K A K F + + A K + L+ DS
Sbjct: 231 QKINNPKKPTSGWGLKPATKHIFGVTMNDFSALLKKYKVNFFDEIDASKGEGLLYSAEDS 290
Query: 460 EANIMQ-----QLKA--NEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKV 512
+ + Q+ A + EE L ++E P V+ ME G+ N + E + +
Sbjct: 291 DYAVQHYEYWSQIAAQISRYEEWLHKIEMPFTRVIGLMEYWGMNWDPNLATQKKQEAEIM 350
Query: 513 IETLTQEIYELAGQEFNIN-------SPKQLGKLLFETLGLPVEMTKKTKTGYS------ 559
E + I ++A + FNI+ ++ L+F+ L +P+ K KTG S
Sbjct: 351 QEQAAERIKQIAKETFNIDINTGKSGKTNEVKSLMFDYLKIPI--AKYGKTGASLDQEAL 408
Query: 560 ------------------------------------TAVDVLE----RLAPISP------ 573
+D LE R+A P
Sbjct: 409 IDMAFMLENKLNDIDEEKYLGVSLPENWENIDPEKDPTLDKLERGAIRIAKREPHPYKEQ 468
Query: 574 ---LVTKILEYRQITKLQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNI 629
++ ++ + ++ T L S++IIG + Y+ G+IH Y T+TGRL+S +PN QN+
Sbjct: 469 ALEVIDQLKKIQKYTTLLSSHIIGREKYLNFMSGRIHAGY-SPFTETGRLNSFNPNGQNV 527
Query: 630 PVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTA 689
P IR FVP + +L D+S ELR++A S DE + F G D+H TA
Sbjct: 528 PRPDNDEFKIRNFFVP-KPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTA 586
Query: 690 MRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAK------QYIDTY 743
+ G + E + +R +AKA NFGI YG ++ L + K Q ++
Sbjct: 587 SVMTGKSEAE-IVKKERTDAKAGNFGISYGGTEHALQFTFKTKYMIRKTLDECAQIVNAV 645
Query: 744 FERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGS 803
Y I Y +V EA+++GYV+T++ R LP INS N R AER A N+P+QGS
Sbjct: 646 KTAYKRIPEYQRKIVLEAREQGYVQTIYGYMRLLPGINSANRRDRGSAERQAANTPVQGS 705
Query: 804 AADILKIAMINL-------DRVLDKGGYKSKMLLQVHDEIVLEVPN--EEIGAIRELVTK 854
AADI+K + + VL G + M+ Q+HDEI+ E+ + E + A+ + + +
Sbjct: 706 AADIMKKVQNEIYESIGKQEGVLSHG--SADMIAQIHDEIIFEIDDDPEIVVAVEKQIKQ 763
Query: 855 TMES--AISLSVPLIADENAGETWYE 878
ME VP+ A+ + G W E
Sbjct: 764 VMEQPPVPGFPVPIEAEGSVGYRWGE 789
>gi|23138023|ref|ZP_00119726.1| hypothetical protein [Cytophaga
hutchinsonii]
Length = 946
Score = 160 bits (404), Expect = 1e-37
Identities = 108/301 (35%), Positives = 169/301 (55%), Gaps = 8/301 (2%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
KL L+D ++ +RA FA +++ R ++G+ T A++GF L IL + +P+HI VAFD
Sbjct: 3 KLFLLDAMALIYRAHFA-FSKNPRV-TSTGISTGAVFGFTNSLLEILLKEKPTHIGVAFD 60
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
TFR + + +YK R + P++ PYI + L+ + I + YEADDI+GT +K
Sbjct: 61 LQGPTFRHDNFTEYKANRQEQPEDISVAIPYIYRLLEGMNIPILGVPGYEADDIVGTFSK 120
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITP-SQF 184
A FD+ +++ DKD +QL + + + + E + ++ K I Q
Sbjct: 121 IAPPLG--FDVYMMTMDKDYMQLVNEHVFLYRPAYMGNDVEIYDINKVLAKFNIKEVDQV 178
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
D+ L GD DNIPG+ IGEKT KL++++GS+E + +N + +K K KEN+IN Q
Sbjct: 179 RDILGLQGDTVDNIPGIPGIGEKTAQKLIADFGSVENLIKNADQLK-GKQKENVINFAAQ 237
Query: 245 AFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAAL-GEETSQEDF 303
LSK LATI+ PI E+ L +I+AL Q +DE++F+ K L G +S +
Sbjct: 238 GLLSKELATIHCEVPIEFD-EEALRVKEYNIEALDQLFDELEFRTLKKRLFGNSSSASET 296
Query: 304 E 304
E
Sbjct: 297 E 297
>gi|13508118|ref|NP_110067.1| 5'-3' exonuclease (complete)
[Mycoplasma pneumoniae]
gi|2494184|sp|P75403|EX53_MYCPN Probable 5'-3' exonuclease
gi|2146104|pir||S73784 DNA polymerase I - Mycoplasma pneumoniae
(strain ATCC 29342)
gi|1674147|gb|AAB96106.1| 5'-3' exonuclease (complete) [Mycoplasma
pneumoniae]
Length = 291
Score = 160 bits (404), Expect = 1e-37
Identities = 101/299 (33%), Positives = 169/299 (55%), Gaps = 19/299 (6%)
Query: 8 LLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDAG 67
+LIDG+S+A+RA+FA + Q++ K ++ NAI +M ++L Q + +++FD
Sbjct: 5 ILIDGNSLAYRAYFATWQQVEFAKLHNLPFNNAIRTMLMMCWNLLQSKQYDYGVISFDTK 64
Query: 68 KTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQA 127
TFR ++Y++YK R+KTP E Q P +++ L LG E + +EADD+IG+ A+
Sbjct: 65 APTFRDQLYSEYKSKRSKTPSELLVQIPVVKESLRHLGFLVCEQDGFEADDLIGSYARLM 124
Query: 128 EASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEK-MGITPSQFID 186
+N DI S D+DL+QL D+ T V + KG E +E+ E+ G+TP Q I+
Sbjct: 125 TQNNVAVDI--YSSDRDLLQLVDSMTSVWLCVKGTKEMKEYNTDNFAEQFFGLTPKQVIE 182
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK---QSKMKENLINDKE 243
K L+GD SDN+ G+ IG K G+ LL +YG+++ I+ N + + Q+ ++ + K+
Sbjct: 183 YKGLVGDNSDNLTGIKGIGPKKGIDLLKQYGTIDNIFANFDKLSKALQTILQGQIDTAKK 242
Query: 244 QAFLSKTLATINIASPITIGLEDILYSG--PQDIKALSQFYDEMDFKQFKAALGEETSQ 300
+FL+ I + +DI+++ P D +AL + D+ K AL ++ SQ
Sbjct: 243 FSFLASIKTDIKLN-------DDIVHAALKPIDKQALLELLDKYGIK----ALAQKFSQ 290
>gi|15606735|ref|NP_214115.1| DNA polymerase I 3'-5' exo domain
[Aquifex aeolicus]
gi|17366200|sp|O67550|EX53_AQUAE Probable 5'-3' exonuclease
gi|7451689|pir||D70440 DNA polymerase I 3'-5' exo domain - Aquifex
aeolicus
gi|2983968|gb|AAC07515.1| DNA polymerase I 3'-5' exo domain
[Aquifex aeolicus VF5]
Length = 289
Score = 159 bits (401), Expect = 3e-37
Identities = 104/282 (36%), Positives = 153/282 (53%), Gaps = 15/282 (5%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
L ++DGSS +R+FFAL + G TNAIYGF ML ++ + +P +++V FDA
Sbjct: 4 LYILDGSSFVYRSFFAL----PPLSTSKGFPTNAIYGFLRMLFSLIKKERPQYLVVVFDA 59
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
T R ++YADYK R K PD + Q P I++ L + GI EL YEADD+I LA++
Sbjct: 60 PAKTKREKIYADYKKQRPKAPDPLKVQIPVIKEILKLAGIPLLELPGYEADDVIAYLAEK 119
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
S + F + + S DKDL+QL N +V E FT +++K G+ P + D
Sbjct: 120 --FSQKGFKVKIYSPDKDLLQLVSENVLVINPMND----EVFTKERVIKKFGVEPQKIPD 173
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAF 246
AL+GDK DN+PG+ +G KT + +L +YGS+E I +N E ++ + KE
Sbjct: 174 YLALVGDKVDNVPGIEGVGPKTAINILKKYGSVENILKNWEKFQREFPRAK----KEDLE 229
Query: 247 LSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFK 288
LS L + I + ED+ P D+ L Q E++ K
Sbjct: 230 LSYKLVKLYTDLDIELSEEDLKIKRP-DLNKLKQKLQELEMK 270
>gi|23112285|ref|ZP_00097788.1| hypothetical protein
[Desulfitobacterium hafniense]
Length = 583
Score = 159 bits (401), Expect = 3e-37
Identities = 154/526 (29%), Positives = 246/526 (46%), Gaps = 84/526 (15%)
Query: 391 PEPAFDTRLAKYLLSTT----EDNLVSTIARLYTNLPLDTDDAV---YGKGAKRAIPEKT 443
P FDT LA LL + + NL +A+ Y N LD ++ G+ + I
Sbjct: 103 PPTLFDTMLASQLLRGSGGPVQSNL-KALAQHYLNEDLDKEEQTSNWQGELTESQILYAA 161
Query: 444 RFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLN 503
R E L + KV++ Q+ N ++ E+E +A +E RGI + +
Sbjct: 162 RDAEILLRLRKVMI-------PQILENHLTQIA-EIEFRCVKAMAHLEYRGIYLDRQKWQ 213
Query: 504 EMAIENQKVIETLTQEIY----------ELAGQEFNINSPKQLGKLLFETL---GLPVEM 550
E+ + + +T E+Y L G++ IN + + + L G+PV
Sbjct: 214 ELYEKTEAERKTALDELYTYVERPLMQMSLWGEDVAINQNFESQQFVLNVLHEHGIPVAA 273
Query: 551 TKKTKTGYSTAVDVLERLAP--ISPLVTKILEYRQITKLQSTYIIGLQDYILE-DGKIHT 607
T K + L P PLV +L YR+ K S ++ I G++H
Sbjct: 274 TAK------------QDLYPHRRHPLVKTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHP 321
Query: 608 RYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAH 667
RY Q +GR+S +PN+Q IP E R F ++L +DYSQIELRV A
Sbjct: 322 RYGQISAWSGRMSCWNPNIQQIPRDSE----FRACFAAPPGRKLIL-ADYSQIELRVAAQ 376
Query: 668 ISKDEHLIAAFKEGADIHTSTAMRVFGIEKP-ENVTPNDRRNAKAVNFGIVYGISDFGL- 725
IS D +I+A+++G D+H TA V KP E ++P +R+ AKAVNFG+++G+ GL
Sbjct: 377 ISGDTRMISAYQQGEDLHLLTASLV--AHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQ 434
Query: 726 ---SHNLGIPRKL--AKQYIDTYFERYPGIKNYMETVV----REAKDKGYVETLFHRRRS 776
N G+ L A ++ + +F+ Y GI + +++ +E + + +++ +
Sbjct: 435 QYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEGRTLAGRKFVYYEKAG 494
Query: 777 LPDINSRNFNIRQFAERTAINSPIQGSAADILKIAM-INLDRVLDKGGYKSKMLLQVHDE 835
LP N+P+QG+AADI+K A+ + ++R+ G + ++ VHDE
Sbjct: 495 LPGY---------------YNTPVQGTAADIVKKALGLLIERL---AGTDTYIVGIVHDE 536
Query: 836 IVLEVPNEEIGAIRELVTKTME---SAISLSVPLIADENAGETWYE 878
I+LE P EE + L+ TME +AI VP D E+W E
Sbjct: 537 ILLESPAEEAHTMAALLKSTMEEAANAILPKVPTKVDVLVSESWAE 582
>gi|23007000|ref|ZP_00049062.1| hypothetical protein
[Magnetospirillum magnetotacticum]
Length = 552
Score = 157 bits (398), Expect = 6e-37
Identities = 87/240 (36%), Positives = 131/240 (54%), Gaps = 10/240 (4%)
Query: 55 VQPSHILVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHY 114
V P+H+ + FD + +FR E++ DYKG R PD+ + Q P +R + G+ ELE Y
Sbjct: 85 VMPTHLGIVFDKSEGSFRKELFPDYKGHRPDAPDDLKRQMPLMRDAVRAFGLHAVELERY 144
Query: 115 EADDIIGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTP---- 170
E+DD+I T A+QAEA ++ +VS DKDL+QL + G + P
Sbjct: 145 ESDDLISTYARQAEARGA--EVIIVSSDKDLMQLVSDKIRFYDFESGAKGKPGYRPERNL 202
Query: 171 ---AYLMEKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIE 227
A + + G++P Q D AL+GD SDN+PGV IG KT L+ EYGSL+ + E
Sbjct: 203 DREAIIAKWEGLSPEQIGDALALIGDTSDNVPGVPGIGLKTAAALIKEYGSLDQLLERAG 262
Query: 228 AMKQSKMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
+KQ K +E L+ + +QA LS+ L + P+ + L+++ P D + L F M+F
Sbjct: 263 DIKQPKRRETLLANIDQARLSRRLVALEENVPVPVPLDELGVPQP-DPQKLVGFLKAMEF 321
>gi|15617030|ref|NP_240243.1| DNA polymerase I [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
gi|17366258|sp|P57506|EX53_BUCAI Probable 5'-3' exonuclease
gi|25331616|pir||A84980 DNA-directed DNA polymerase (EC 2.7.7.7)
[imported] - Buchnera sp. (strain APS)
gi|10039095|dbj|BAB13129.1| DNA polymerase I [Buchnera aphidicola
str. APS (Acyrthosiphon pisum)]
Length = 286
Score = 157 bits (397), Expect = 7e-37
Identities = 100/271 (36%), Positives = 152/271 (55%), Gaps = 17/271 (6%)
Query: 5 NKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQP-SHILVA 63
N +++IDGS + +++A N +N SG AIYG ++++I + + I++
Sbjct: 7 NPVIIIDGSLYLYASYYAFCN----LENTSGKPCGAIYGMLKIIDNIFKKYKNLKKIIII 62
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FD+ + TFR +++ +YK R+ PD Q + + L +GIK + EADD+IG+L
Sbjct: 63 FDSSRKTFRNKLFKEYKKNRSSMPDLLVMQIQPLFEILKKIGIKTLTIPGIEADDVIGSL 122
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQ 183
+ Q E E I ++S DKD++QL N + K T + EK GI P +
Sbjct: 123 SYQLEKQGE--KILILSHDKDMLQLVTENINIFHKKNNCI----ITSEIIQEKYGIKPKE 176
Query: 184 FIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE------N 237
FID ALMGD +DNIPGV KIG KT L L++++ ++E IY NIE +K ++
Sbjct: 177 FIDFLALMGDATDNIPGVPKIGIKTALFLINKFSNIENIYNNIEKIKSLPLRNAKNISIQ 236
Query: 238 LINDKEQAFLSKTLATINIASPITIGLEDIL 268
L N+KE+A LS LA I + PI I L+DI+
Sbjct: 237 LKNNKERALLSYKLARIKLDIPIDIKLKDII 267
>gi|27666712|ref|XP_221423.1| similar to polymerase (DNA directed),
theta; polymerase (DNA-directed), theta [Homo sapiens]
[Rattus norvegicus]
Length = 2318
Score = 156 bits (395), Expect = 2e-36
Identities = 185/713 (25%), Positives = 293/713 (40%), Gaps = 166/713 (23%)
Query: 322 DFYYFEMLGDNYHVEDLIGIAWGNSD-TIYATSNVSLLQEALFKKA-LSKPIKTYDFKRS 379
D YY + + E +A D T+ + LQ L KK+ + + TYDF ++
Sbjct: 1614 DAYYLSLQKEQKQSEMSPSLAPPPLDATLTVKERMEYLQSCLQKKSDQERSVVTYDFIQT 1673
Query: 380 -KVLLNRFNIDLPEPAF-DTRLAKYLLSTTEDNLVSTIARLYTN-LP--------LDTDD 428
KVLL I L EP++ D ++A +LL D+ T+ + T+ LP ++T
Sbjct: 1674 YKVLLLSCGISL-EPSYEDPKVACWLLDP--DSKEPTLHSIVTSFLPHELALLEGIETGP 1730
Query: 429 AVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEELLFEM----EQPLA 484
+ G R+ A VL+ N M QL + Q+E L ++ E P
Sbjct: 1731 GIQSLGLNVNTDHSGRY---RASVESVLI---FNSMNQLNSMLQKENLHDIFCKVEMPSQ 1784
Query: 485 NVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEFNINSPKQLGKLLFETL 544
LA +E+ GI Q ++ + + Y+LAG F+ S + ++LF L
Sbjct: 1785 YCLALLELNGIGFSTAECETQKHIMQAKLDAIETQAYQLAGHSFSFTSADDIAQVLFLEL 1844
Query: 545 GLPVEMTKKTKTG----------------------YSTAV------------------DV 564
LP KT+ G +ST+ D+
Sbjct: 1845 KLPPNGEMKTQGGRKTLGSTRRGTESDRKLRLGRRFSTSKVLGGTHRAHMGHTRGTHGDI 1904
Query: 565 LERLAPISPLVTKILEYRQITKLQSTYIIGLQ-----DYILEDGKIHTRYVQDLTQTGRL 619
L +L + PL ILE+R+I+ + + LQ + L +I+ Q T TGR+
Sbjct: 1905 LNKLKDLHPLPGLILEWRRISNAITKVVFPLQREKHLNPFLRMERIYP-VSQSHTATGRI 1963
Query: 620 SSSDPNLQNIP--VRLEQGRLIRKAFVPSEDNA---VLLSSDYSQI------ELRVLAHI 668
+ ++PN+QN+P ++ L+R++ PS+ + + ++ ++ + VL
Sbjct: 1964 TFTEPNIQNVPRDFEIKMPTLVRES-PPSQASGKGQLAMARQNQKVYGLHPGQRTVLEKT 2022
Query: 669 SKD--------EHLIAAF---KEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIV 717
S H F GAD+ S A IE P+ V N R+ AK + +GI+
Sbjct: 2023 SDRGVPFSVSMRHAFVPFPVLNSGADVFRSIAAEWKMIE-PDAVGDNLRQQAKQICYGII 2081
Query: 718 YGISDFGLSHNLGIPRKLAKQYIDTYFERYP----------------------------- 748
YG+ L +GI A YID++ RY
Sbjct: 2082 YGMGAKSLGEQMGIKENDAACYIDSFKSRYKGLPSKVSTLVCGLIPAHPAHEREGETSRS 2141
Query: 749 --------GIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPI 800
GI ++M V+ + G+VET+ RRR LP I N + AER AIN+ +
Sbjct: 2142 SVDPLRQQGINHFMRDTVKNCRRDGFVETILGRRRYLPGIKDNNPYHKAHAERQAINTTV 2201
Query: 801 QGSAADILKIAMINLDRVLD-------KGGYKSKML------------------------ 829
QGSAADI+K+A +N+ + L+ G++ ML
Sbjct: 2202 QGSAADIVKVATVNIQKQLETFHPTFKSHGHRESMLQSDRAGLLPKRKVKGMFCPMRGGF 2261
Query: 830 --LQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENAGETWYEAK 880
LQ+HDE++ EV E++ + ++V ME AI LSV L G +W E K
Sbjct: 2262 FILQLHDELLYEVAEEDVVQVAQIVKNEMECAIKLSVKLKVKVKIGASWGELK 2314
>gi|27904863|ref|NP_777989.1| putative 5'-3' exonuclease [Buchnera
aphidicola (Baizongia pistaciae)]
gi|27904261|gb|AAO27094.1| putative 5'-3' exonuclease [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 302
Score = 155 bits (392), Expect = 3e-36
Identities = 106/266 (39%), Positives = 147/266 (54%), Gaps = 16/266 (6%)
Query: 8 LLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDAG 67
LLIDG+S +RA++A +FKNN AIYG ML +L + S+I+V FD+
Sbjct: 11 LLIDGTSYLYRAYYAFL----KFKNNFNKPCGAIYGMLNMLRSMLLKYPYSNIVVIFDSP 66
Query: 68 KTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQA 127
+ TFR E++ YK R K P++ +EQ I + +GI + H EADDIIGTLA
Sbjct: 67 QKTFRNELFIPYKKNRPKMPNDLKEQILPIHHIIKHIGIPIISIPHVEADDIIGTLA--T 124
Query: 128 EASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFIDL 187
+ + + I + + DKDL QL + + V I + E + + +K GI P DL
Sbjct: 125 KLYKKKYFILISTNDKDLAQLVNIHIHVLIGTSNIVLDE----SKVKKKYGIIPKLIPDL 180
Query: 188 KALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKE------NLIND 241
LMGD SDNIPGV +G+KT L LL +GSLE IY NIE + + +K+ NL
Sbjct: 181 LGLMGDNSDNIPGVPTVGKKTALILLKTFGSLENIYNNIEKIPKCLIKKAKTIYNNLHTY 240
Query: 242 KEQAFLSKTLATINIASPITIGLEDI 267
K+ AFLS+ LATI + I + I
Sbjct: 241 KKLAFLSQKLATIKTDINVNITTKKI 266
>gi|15604609|ref|NP_221127.1| DNA POLYMERASE I (polA) [Rickettsia
prowazekii]
gi|6015004|sp|O05949|DPO1_RICPR DNA polymerase I (POL I)
gi|7434819|pir||C71638 DNA polymerase I (polA) RP776 - Rickettsia
prowazekii
gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii]
gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia
prowazekii]
gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii]
gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii]
Length = 867
Score = 155 bits (391), Expect = 4e-36
Identities = 97/290 (33%), Positives = 151/290 (51%), Gaps = 11/290 (3%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA++A + + G A+YGF ML +L +P ++
Sbjct: 1 MTKKNTLLLIDGYGFVFRAYYAQKS----LSSAKGEPVGALYGFTSMLLKLLSDFKPQYV 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
+ FD+G FR ++Y +YK R P + Q P +R E YEADDII
Sbjct: 57 AIVFDSGGKNFRHKIYQNYKANRPLPPKDLIAQLPLVRDVASNFKFAILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGIT 180
T A + + E ++ ++S DKDL+QL N + K + T ++ K G T
Sbjct: 117 ATFATKTVSLGE--EVIIISSDKDLLQLMSKNIKIYDPIK----CKYITEDNVVTKFGTT 170
Query: 181 PSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLIN 240
P + ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ +++ + K ++ L N
Sbjct: 171 PDKLREVMALIGDRSDNIPGVPSIGPKTASSLITKFGSVENIFNSLDQISSIKQRKTLQN 230
Query: 241 DKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
+E A +S L ++ + L ++ +S P + K L+ F E FK
Sbjct: 231 AREAALISWKLIGLDSNVDLDFDLNNLKWS-PPNSKKLTGFLQEYGFKSL 279
>gi|26553652|ref|NP_757586.1| DNA polymerase I: 5'-3' exonuclease
[Mycoplasma penetrans]
gi|26453658|dbj|BAC43990.1| DNA polymerase I: 5'-3' exonuclease
[Mycoplasma penetrans]
Length = 292
Score = 153 bits (387), Expect = 1e-35
Identities = 99/294 (33%), Positives = 154/294 (51%), Gaps = 4/294 (1%)
Query: 4 KNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
K K +LIDG+S+ FRA++ NQ+D + N+ TNAI L++ +L + ++A
Sbjct: 2 KKKAILIDGNSLMFRAYYGTINQVDYYIKNNLEPTNAIKTMMLIIFKLLTTNNYDYAVIA 61
Query: 64 FDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTL 123
FD FR E DYKG R KTPD Q I++ + G+ Y + EADD++G+
Sbjct: 62 FDHKDKNFRKEELEDYKGTRKKTPDHLISQIEPIKEIMSYFGLNVYCVSGIEADDVVGSA 121
Query: 124 AKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKM-GITPS 182
+K ++ + +I S D DL+QL + V KKG+ E +T G+ P+
Sbjct: 122 SKLLTDNDVYCEI--YSSDNDLLQLVNEKANVIQLKKGIDETITYTQENFSNLFYGLQPA 179
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDK 242
Q D K + GD SDN+PG+ +G KT + LL +Y SLE IYEN++ + + +K L+ K
Sbjct: 180 QIPDYKGISGDSSDNLPGIKGLGNKTAIDLLQKYKSLESIYENLDFITSNSVKTKLLAGK 239
Query: 243 EQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQFKAALGE 296
E K LATI + +++ + G D + + ++ F FK +GE
Sbjct: 240 EIGLKCKKLATILVNYFDDKKIDEFAFKG-MDQEKIKDIINKYHFSGFKKYIGE 292
>gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi]
Length = 872
Score = 149 bits (377), Expect = 2e-34
Identities = 96/295 (32%), Positives = 149/295 (49%), Gaps = 21/295 (7%)
Query: 1 MTNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
MT KN LLLIDG FRA++A + + G A+YGF ML +L +P +
Sbjct: 1 MTKKNTLLLIDGYGFVFRAYYAQQS----LSSAKGEPVGALYGFTSMLLKLLSDFKPQYG 56
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDII 120
+ FD+G FR ++Y +YK R P++ Q P IR L E YEADDII
Sbjct: 57 AIVFDSGGKNFRHKIYQNYKANRPTPPEDLIGQLPLIRDVASHLNFAILEKNGYEADDII 116
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLME----- 175
T A + + ++ ++S DKDL+QL N + ++ Y+ E
Sbjct: 117 ATFATKTITLGK--EVIIISSDKDLLQLMSKNIKI---------YDPIKCKYITEDDVII 165
Query: 176 KMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMK 235
K G TP + ++ AL+GD+SDNIPGV IG KT L++++GS+E I+ +++ + K +
Sbjct: 166 KFGTTPDKLREVMALIGDRSDNIPGVPSIGPKTASSLITQFGSVENIFNSLDQISSIKQR 225
Query: 236 ENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
+ L N +E A +S L ++ + L ++ +S P K + F + FK
Sbjct: 226 KTLQNSREAALISWRLIGLDSNVDLDFNLNNLEWSHPNSEKLIG-FLQKYGFKSL 279
>gi|23131695|ref|ZP_00113480.1| hypothetical protein
[Prochlorococcus marinus str. MIT 9313]
Length = 986
Score = 149 bits (375), Expect = 3e-34
Identities = 99/277 (35%), Positives = 147/277 (52%), Gaps = 21/277 (7%)
Query: 3 NKNKLLLIDGSSVAFRAFFALYNQID-RFKNNSGLHTNAIYGFHLMLNHILGRVQPSHIL 61
NK LLL+DG S+AFR+F+A + G T+ YGF L + P I+
Sbjct: 6 NKPLLLLVDGHSLAFRSFYAFSKGGEGGLATKDGTPTSVTYGFLKALLDNCKGLSPQGIV 65
Query: 62 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLD-VLGIKHYELEHYEADDII 120
+AFD + TFR + +YK R PD F + +++ L+ L + YEADD++
Sbjct: 66 IAFDTAEPTFRHQADVNYKANRDVAPDIFFQDLKQLQEILENNLQLPLCLAPGYEADDVL 125
Query: 121 GTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEE------FTPAYLM 174
GTLA Q AS + + + ++SGD+DL QL D + + G + + A ++
Sbjct: 126 GTLANQ--ASRDGWGVRILSGDRDLFQLVDDQRDIAVLYMGGGPYAKNSGPSLIDEAGVL 183
Query: 175 EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENI-----EAM 229
K+G+ PS+ ++LKAL GD SDNIPGV +G KT + LL E G L+GIY + E
Sbjct: 184 SKLGVAPSKVVELKALTGDSSDNIPGVKGVGPKTAITLLKENGDLDGIYNALAEVEAEGE 243
Query: 230 KQSK------MKENLINDKEQAFLSKTLATINIASPI 260
K S+ +K L ND++ A+LS LA I + P+
Sbjct: 244 KASRGAIKGALKSKLSNDRDNAYLSLHLAEILVDIPL 280
>gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex
pyrophilus]
Length = 574
Score = 148 bits (374), Expect = 4e-34
Identities = 163/555 (29%), Positives = 270/555 (48%), Gaps = 62/555 (11%)
Query: 349 IYATSNVSLLQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTE 408
+Y +++ L+E + +K + ++ K L + I+ P FDT +A +LL
Sbjct: 52 LYEIHDITPLRELISEKG----VIGHNLKFDLHYLMNYQIE-PLATFDTMIASFLLGYER 106
Query: 409 DNLVSTIARL--YTNLPLDTDDAVYGKGAKRAIPEKTRF-------LEHLAKKVKVLVDS 459
+L + L YT LD + GA + ++ L L K++ +++
Sbjct: 107 HSLNHLVGNLLGYT---LDKSYQLSDWGAPVLSDAQLKYAAKDVDVLRELFPKLRDMLNE 163
Query: 460 EANIMQQLKANEQEELLFEMEQPLANV-------LAKMEIRGIKVKKNTLNEMAIENQKV 512
+ + +F ++ P+A V +AK+E G+ V TL K
Sbjct: 164 LEGERGEELLKTRTARIFGLKSPVAIVEMAFVKEVAKLERNGLPVDIETLESTL----KD 219
Query: 513 IETLTQEIYELAGQEFNIN--SPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAP 570
IE TQ+ + +F ++ SPKQ+G+LL L + T+K ST VL A
Sbjct: 220 IERKTQKKVQEFLIKFRVDPFSPKQVGQLLTSKYKLNLPRTQKGNV--STDDKVLSSYAH 277
Query: 571 ISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQTGRLSSSDPNLQNIP 630
+ P V +LE R++ KL + ++ L+ +++ + Q TGR+SS PN+QN+P
Sbjct: 278 VEP-VRLLLEIRKLKKLSDKFKEIKEN--LKGDRLYPEFKQIGAVTGRMSSLKPNVQNVP 334
Query: 631 VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAM 690
R R F E N ++ +D+SQIELR+ A +E +I AF+EG D+H TA
Sbjct: 335 ------REERAIFKAPEGNTFVI-ADFSQIELRIAAEYVNEELMIRAFREGKDLHRYTAS 387
Query: 691 RVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLS------HNLGIPRKLAKQYIDTYF 744
V G ++ E +T +R+ AKA+NFG++YGIS GL+ + + I + A+ + + +F
Sbjct: 388 LVLG-KREEEITKEERQLAKAINFGLIYGISAKGLAEYARTGYGVEISEEEAETFRNRFF 446
Query: 745 ERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSA 804
+ + K + E V +E K+KG +F R L R F F + A+N PIQG+
Sbjct: 447 KNFKAFKLWHEKVKKELKEKG----VFRGRTLL----GRRFTATTFND--AVNYPIQGTG 496
Query: 805 ADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESA---IS 861
AD+LK+A++ D K +K++ VHDEIV+E E ++E++ K M+ A I
Sbjct: 497 ADLLKLAVLLFDAEAKKKKLDAKLVNLVHDEIVVECRKEVANQVKEVLEKAMKQAGKIIL 556
Query: 862 LSVPLIADENAGETW 876
VP+ + E W
Sbjct: 557 KKVPVEVESVINERW 571
>gi|28828242|gb|AAO50919.1| similar to Mus musculus (Mouse). DNA
polymerase theta short isoform [Dictyostelium
discoideum]
Length = 516
Score = 148 bits (373), Expect = 5e-34
Identities = 130/484 (26%), Positives = 219/484 (44%), Gaps = 74/484 (15%)
Query: 466 QLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEI-YELA 524
Q N+ + E+E + + A ME GI + + Q I L + L
Sbjct: 11 QSAENQSLFIFSEIEMKILPIFAMMEFVGIGFNEKICESGREKVQNKINYLEYKAKVLLP 70
Query: 525 GQEFNINSPKQLGKLLFETLGLPVEMTKKT------------------KTGYSTAVDVLE 566
G+ F+++S + + +LLF+ L +PV K + YST VLE
Sbjct: 71 GKVFSLSSTEDISQLLFQDLKIPVPEIAKANQQYNGNKGGGGCGGGVRRQNYSTKGAVLE 130
Query: 567 RLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYV-----QDLTQTGRLSS 621
++ PL I+E R++T + Y+ L Y + + R + Q + TGR+S
Sbjct: 131 HISHHHPLPGLIIEIRKLTHHITHYVDILGKYEYHSDRFNMRRIYSTIQQTVVPTGRISM 190
Query: 622 SDPNLQNIPVRLEQGRLIRKAFVPSEDNA------------------------------- 650
+ PNLQNI +E + + S+D+
Sbjct: 191 AFPNLQNISHPIEFRVAPSETDLQSQDSIKSFQDEIHTFDYTNDQNFKNLLEIESRCSFT 250
Query: 651 --------------VLLSSDYSQIELRVLAHISKDEHLIAAFK--EGADIHTSTAMRVFG 694
VLLS+DYSQ+ELR+L H SKD +LI F D+ A ++ G
Sbjct: 251 KVSLRNSFTCANGYVLLSADYSQLELRILTHYSKDPNLIEMFNYSRELDVFKCIAHQLSG 310
Query: 695 IEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYM 754
++ E V+ +R AK + +GI+YG+ ++ L + ++ AK ++ + Y + +++
Sbjct: 311 VDY-EKVSDEERNFAKHLVYGILYGMGINSIASELKVDKEKAKVQLERFKNTYRTLIDFL 369
Query: 755 ETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFA--ERTAINSPIQGSAADILKIAM 812
E++ Y++TLF R R+ I+ + +R A NS QG+AADI K+AM
Sbjct: 370 ESIEDRVFIDAYIKTLFGRIRNFSAIHDPKTLPKDIGKIKRGARNSVPQGTAADITKLAM 429
Query: 813 INLDRVLDKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVPLIADENA 872
IN+ D+ M+LQ+HDE++ EVP +I +++ ++ME+ + L+VPL +
Sbjct: 430 INIQSQFDQLSINVHMVLQLHDELLFEVPLTDIDQSAKIIKESMENVVKLNVPLPIKMSI 489
Query: 873 GETW 876
G W
Sbjct: 490 GTNW 493
>gi|32492179|emb|CAE04166.1| OSJNBb0034I13.15 [Oryza sativa (japonica
cultivar-group)]
Length = 1000
Score = 147 bits (370), Expect = 1e-33
Identities = 96/285 (33%), Positives = 143/285 (49%), Gaps = 32/285 (11%)
Query: 626 LQNIPVRLEQGRL-IRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADI 684
LQN P LE+ R IR+AFV + N+ L+ +DY Q+ELR+LAH++ + ++ AFK G D
Sbjct: 718 LQNQPA-LEKDRYKIRQAFVAAPGNS-LIVADYGQLELRILAHLASCKSMLDAFKAGGDF 775
Query: 685 HTSTAMRVF--------------------GIEKP-----ENVTPNDRRNAKAVNFGIVYG 719
H+ TAM ++ G EKP ++ +RR AK +NF I YG
Sbjct: 776 HSRTAMNMYQHIRDAVEEKKVLLEWHPQPGQEKPPVPLLKDAFGAERRKAKMLNFSIAYG 835
Query: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPD 779
+ GL+ + + K AK + ++ + + A++K V TL R R P+
Sbjct: 836 KTPVGLARDWKVSVKEAKDTLKLWYRDRKEVLAWQMKQKELAQEKCEVYTLLGRSRRFPN 895
Query: 780 INSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKMLLQVHDEIVLE 839
+ R ER AIN+P+QGSAAD+ AM+ +DR ++LLQVHDE++LE
Sbjct: 896 MAHATSGQRGHIERAAINAPVQGSAADVAMCAMLEIDRNARLKELGWRLLLQVHDEVILE 955
Query: 840 VPNEEIGAIRELVTKTMESAIS----LSVPLIADENAGETWYEAK 880
P E + +V + M L+V L D + WY AK
Sbjct: 956 GPTESADLAKSIVVECMSKPFYGTNILNVELAVDAKCAQNWYAAK 1000
>gi|23122969|ref|ZP_00105104.1| hypothetical protein
[Prochlorococcus marinus subsp. pastoris str. CCMP1378]
Length = 976
Score = 146 bits (369), Expect = 1e-33
Identities = 93/280 (33%), Positives = 151/280 (53%), Gaps = 21/280 (7%)
Query: 2 TNKNKLLLIDGSSVAFRAFFALYNQID-RFKNNSGLHTNAIYGFHLMLNHILGRVQPSHI 60
+ K LLL+DG S+AFR+F+A +D G T+ YGF L + +
Sbjct: 8 SKKPILLLVDGHSLAFRSFYAFSKGVDGGLTTKEGFPTSVTYGFLKSLLDNCKNINAEGV 67
Query: 61 LVAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQL-DVLGIKHYELEHYEADDI 119
+ FD K TFR E+ +YK R PD F + + L + L + ++ +EADD+
Sbjct: 68 CITFDTEKPTFRHELDPNYKANRDVAPDVFFQDIEQLEIILKESLNLPIFKSPGFEADDL 127
Query: 120 IGTLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLM----- 174
+GT+A +AS++ + + ++SGD+DL QL D + + G + + LM
Sbjct: 128 LGTIAN--DASSKGWCVNILSGDRDLFQLVDDQKDIYVLYMGGGPYAKSGNPTLMNENGV 185
Query: 175 -EKMGITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSK 233
EK+G+ P + +DLKAL GD SDNIPG+ +G KT + LL E +L+GIY+ ++ +++ +
Sbjct: 186 KEKLGVYPERVVDLKALTGDSSDNIPGIKGVGPKTAINLLKENDTLDGIYKALDIIQKDE 245
Query: 234 -----------MKENLINDKEQAFLSKTLATINIASPITI 262
++E L NDK A+LS+ LA I++ P+ +
Sbjct: 246 DKKYQGFIKGAVREKLKNDKFNAYLSRDLAKIDVEVPLVL 285
>gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein
[Nitrosomonas europaea ATCC 19718]
gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein
[Nitrosomonas europaea ATCC 19718]
Length = 912
Score = 144 bits (363), Expect = 8e-33
Identities = 95/284 (33%), Positives = 147/284 (51%), Gaps = 12/284 (4%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFDA 66
LLL+DGSS +RAF AL + +R +G AIYG ML + +P + FDA
Sbjct: 4 LLLVDGSSYLYRAFHALPDLRNRLNEPTG----AIYGVLNMLRRLHKEYRPDYSACVFDA 59
Query: 67 GKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQ 126
TFR ++Y YK R P++ Q + + +G E EADD+IGTL ++
Sbjct: 60 KGKTFRDDIYPQYKAHRPPMPEDLVCQIGPLYACIRAMGWPLLIEEGVEADDVIGTLVER 119
Query: 127 AEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFID 186
A A + +GDKD+ QL I E + +++K G+TP+Q ID
Sbjct: 120 AIARQAQ--CVIATGDKDIAQLVRPG----IWLVNTMNNESLDESGILQKFGVTPAQIID 173
Query: 187 LKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAF 246
AL+GD DNIPGV K+G KT +K L +YG+L+ + + + +K + ENL +
Sbjct: 174 FLALVGDSVDNIPGVEKVGPKTAVKWLDQYGTLDDLIAHADEIK-GVVGENLRKALDWLK 232
Query: 247 LSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDFKQF 290
+S+ L TI P+ + +D L + P D L++ Y+ ++F+ +
Sbjct: 233 VSRKLLTIKCDVPLAMDWQD-LVAVPPDTARLTELYEHLEFRSW 275
>gi|13357976|ref|NP_078250.1| DNA polymerase I: 5'-3' exonuclease
domain [Ureaplasma urealyticum]
gi|17367031|sp|Q9PQ75|EX53_UREPA Probable 5'-3' exonuclease
gi|11280430|pir||C82895 DNA polymerase I 5'-3'-exonuclease domain
homolog UU414 [imported] - Ureaplasma urealyticum
gi|6899402|gb|AAF30825.1|AE002138_12 DNA polymerase I: 5'-3'
exonuclease domain [Ureaplasma urealyticum]
Length = 289
Score = 144 bits (362), Expect = 1e-32
Identities = 92/250 (36%), Positives = 138/250 (54%), Gaps = 4/250 (1%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
K ++IDG+S+ +RAF A Y Q + + TNAI M+ IL + Q ++ L+A D
Sbjct: 3 KAIVIDGNSLIYRAFHATYKQAEWAVEKQLMPTNAIKLVASMIFKILNQEQFTYGLIAMD 62
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
A K TFR + YA YK R + Q PY+++ +G + EADD +G+ +
Sbjct: 63 ASKQTFRAQEYAAYKATRKPMDAKLIVQLPYLKKLFVAMGFRIISQPGIEADDFVGSFSN 122
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFT-PAYLMEKMGITPSQF 184
+ D T+ S D+D++QL + NT +++ K G + +E + + GI P Q
Sbjct: 123 LMNKFD--VDTTIYSSDRDMLQLINKNTKLKLLKTGTSVMQEINLTNFSLLNNGILPYQI 180
Query: 185 IDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQ 244
I+ K L+GD SDN+ GV IG KT + LL +Y ++E IY N+E + S +K LI K+
Sbjct: 181 IEYKGLVGDSSDNLIGVKGIGPKTAINLLLKYDNIENIYTNLEKIAPS-VKNKLIEHKDM 239
Query: 245 AFLSKTLATI 254
AFLSK LA I
Sbjct: 240 AFLSKKLAAI 249
>gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii]
Length = 1813
Score = 143 bits (360), Expect = 2e-32
Identities = 144/523 (27%), Positives = 252/523 (47%), Gaps = 57/523 (10%)
Query: 358 LQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAFDTRLAKYLLSTTEDNL---VST 414
L++ L + + K I+ F +L N FNI FDT +A LL ++ ++
Sbjct: 1309 LRKILNDENIVKIIQNGKFDTKFLLYNNFNI---TNIFDTYIASKLLDKNKNMYGFKLNN 1365
Query: 415 IARLYTNLPLDTDDAVYGKGAKRAIPEKTRFLEHLAKKVKVLVDSEANIMQQLKANEQEE 474
I Y ++ LD L + A+ L+ + +Q+ A E +
Sbjct: 1366 IVEKYLSVYLDKQQQ---NSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQITA-ENMQ 1421
Query: 475 LLFEMEQPLANVLAKMEIRGIKV-----KKNT---LNEMAIENQKVIETLTQEIYELAGQ 526
++ ++E + ME+ GIKV K+T LNE+ +E K+ + EL
Sbjct: 1422 IVNDIENKCILPICDMELNGIKVDLESLNKSTDQILNELNVERDKLKK-------ELKND 1474
Query: 527 EFNINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITK 586
+ N+NS +Q+ K L + + T + + + A V + YR++ K
Sbjct: 1475 DINVNSQQQILKALQDNNVRDLSNKLIDNTSDANLKNFINHNA-----VILLRNYRKLYK 1529
Query: 587 LQSTYIIGLQDYI-LEDGKIHTRYVQDLTQTGRLSSSDPNLQNIPVRLEQGRLIRKAFVP 645
L S + + L +I + KIHT + Q T +GR SS PNLQ IP + + IR+ F+P
Sbjct: 1530 LYSAFYLKLPLHINKKTNKIHTTFNQLKTFSGRFSSEKPNLQQIP----RQKNIREIFIP 1585
Query: 646 SEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPND 705
+E+N + + +D+ QIEL++ A I+ DE ++ A+ D+HT TA + + + D
Sbjct: 1586 TENN-IFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTA-SIITKKGINEINKED 1643
Query: 706 RRNAKAVNFGIVYGISDFGLS------HNLGIPRKLAKQYIDTYFERYPGIKNYMETVVR 759
R AKA+NFG++YG++ L +N+ + + +++FE Y G+ + + V+
Sbjct: 1644 RHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLSRWHNS-VK 1702
Query: 760 EAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVL 819
+ K Y TL +R+ P F+ A+N P+QG+ ADILK+A++ L + L
Sbjct: 1703 QTKALEY-STLSNRKVVFP----------YFSFTKALNYPVQGTCADILKLALVELYKNL 1751
Query: 820 DKGGYKSKMLLQVHDEIVLEVPNEEIGAIRELVTKTMESAISL 862
K++L VHDEI++EV + +++ ++ME++ S
Sbjct: 1752 RH--INGKIILCVHDEIIIEVDKKHQEEALKILVESMENSASF 1792
>gi|118855|sp|P19822|DPOL_BPT5 DNA polymerase
gi|67055|pir||DJBPT5 DNA-directed DNA polymerase (EC 2.7.7.7) -
phage T5
gi|215988|gb|AAA32561.1| polymerase
Length = 829
Score = 141 bits (355), Expect = 6e-32
Identities = 124/459 (27%), Positives = 225/459 (49%), Gaps = 46/459 (10%)
Query: 448 HLAKKVKVLVDSEANIMQQLKANEQE-ELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMA 506
+ AK + + +++ NE+ L +++ P L ++E RG+ + + L E
Sbjct: 286 YAAKDTDATIRLHNFFLPKIEKNEKLCSLYYDVLMPGCVFLQRVEDRGVPISIDRLKEAQ 345
Query: 507 IENQKVIETLTQEIY---------ELAGQEFNINSPKQLGKLLFETLGLPVEMTKKTKTG 557
+ + +++Y + + FN NS KQL LLF+ +GL K T TG
Sbjct: 346 YQLTHNLNKAREKLYTYPEVKQLEQDQNEAFNPNSVKQLRVLLFDYVGL-TPTGKLTDTG 404
Query: 558 Y-STAVDVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYVQDLTQT 616
ST + L LA P+ +LE R++TKL STY+ + I DG I T + + +T +
Sbjct: 405 ADSTDAEALNELATQHPIAKTLLEIRKLTKLISTYVEKILLSIDADGCIRTGFHEHMTTS 464
Query: 617 GRLSSSDP-NLQNIPVRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLI 675
GRLSSS NLQ +P + I K V + +++ D + E+ A +S D ++
Sbjct: 465 GRLSSSGKLNLQQLP----RDESIIKGCVVAPPGYRVIAWDLTTAEVYYAAVLSGDRNMQ 520
Query: 676 AAF-------KEGADIHTSTAMRVFGIE-KPENVT---PNDRRNAKAVNFGIVYGISDFG 724
F + D H++ A VF ++ +P +V P R+ AKA+ FGI+YG
Sbjct: 521 QVFINMRNEPDKYPDFHSNIAHMVFKLQCEPRDVKKLFPALRQAAKAITFGILYGSGPAK 580
Query: 725 LSHNL-----------GIP-----RKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVE 768
++H++ G P AK+YI+TYF ++P +K +++ + K+ G++
Sbjct: 581 VAHSVNEALLEQAAKTGEPFVECTVADAKEYIETYFGQFPQLKRWIDKCHDQIKNHGFIY 640
Query: 769 TLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLDKGGYKSKM 828
+ F R+R L +I+S + ++ R+ N+ IQ +++D L + ++ D + G + +M
Sbjct: 641 SHFGRKRRLHNIHSEDRGVQGEEIRSGFNAIIQSASSDSLLLGAVDADNEIISLGLEQEM 700
Query: 829 --LLQVHDEIVLEVPNEEIGAIRELVTKTMESAISLSVP 865
++ VHD +V V + I E++ + ++ +S+P
Sbjct: 701 KIVMLVHDSVVAIVREDLIDQYNEILIRNIQKDRGISIP 739
>gi|15614743|ref|NP_243046.1| 5'-3' exonuclease [Bacillus
halodurans]
gi|17366931|sp|Q9KAV6|EX53_BACHD Probable 5'-3' exonuclease
gi|25331618|pir||D83922 5'-3' exonuclease BH2180 [imported] -
Bacillus halodurans (strain C-125)
gi|10174799|dbj|BAB05899.1| 5'-3' exonuclease [Bacillus halodurans]
Length = 303
Score = 141 bits (355), Expect = 7e-32
Identities = 93/277 (33%), Positives = 147/277 (52%), Gaps = 11/277 (3%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRF---KNNSGLHTNAIYGFHLMLNHILGRVQPSHILVA 63
LLLIDG ++ R +FA D +N +G + NA+ F L ++ +H+ VA
Sbjct: 6 LLLIDGFNLLSRGYFATSYGKDEAQLPRNEAGYYINALRVFFPKLFQLIREHNVTHVAVA 65
Query: 64 FDAGKT-TFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGT 122
+D + + R + +A YK R + P+ EQ+ L+ +G+ + YEADD IG
Sbjct: 66 WDVKREDSHRRQAFAFYKASRGELPEALIEQYETATSLLEEIGVAQVTIPPYEADDTIGA 125
Query: 123 LAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPS 182
A + A E + S D+DL+QL +T IS KG +T I+P+
Sbjct: 126 FACRW-AKEEKGHCFIYSNDRDLLQLLSKSTSQIISSKGKDLI--YTEENFRNDYNISPA 182
Query: 183 QFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAM--KQSKMKENLIN 240
Q++D+KAL+GDKSDNIPG +GEK+ L L+ +YG++E +YE IE + K + + L+
Sbjct: 183 QWVDVKALLGDKSDNIPGCPGVGEKSALPLIQQYGTIETLYEQIEDLDPKYKRYHKKLVA 242
Query: 241 DKEQAFLSKTLATIN--IASPITIGLEDILYSGPQDI 275
+E +SK LATI I + + L ++ + P D+
Sbjct: 243 GEESVIISKELATITTEIEAISSFSLNSLVLTTPADL 279
>gi|24421685|gb|AAN60992.1| Unknown protein [Oryza sativa (japonica
cultivar-group)]
Length = 443
Score = 140 bits (352), Expect = 1e-31
Identities = 89/322 (27%), Positives = 158/322 (48%), Gaps = 54/322 (16%)
Query: 3 NKNKLLLIDGSSVAFRAFFAL---------------------------YNQIDRFKNNSG 35
+K++++L+DG+SV +R+++ + + Q++ N
Sbjct: 89 SKSRIMLVDGTSVMYRSYYKILGKCFLILFVTSVLVYYVWLLLLIKLQHGQLEHADGNGD 148
Query: 36 LHTNAIYGFHLMLNHILGRVQPSHILVAFD-------------------AGKTTFRTEMY 76
L+L+ + PSH V FD A TFR +Y
Sbjct: 149 WVLTIFKALSLVLDML--EFIPSHAAVVFDHDGVPYGHYTAMPSKECHMAKGMTFRHMLY 206
Query: 77 ADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAKQAEASNEHFDI 136
YK R TPD + Y++ + + IK E+ EADD+IGTLA + ++ + +
Sbjct: 207 PSYKSNRIPTPDTIVQGMQYLKASIKAMSIKVIEVPGVEADDVIGTLAVSSVSAG--YKV 264
Query: 137 TVVSGDKDLIQ-LTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFIDLKALMGDKS 195
+VS DKD Q L+ + ++ I+ +G ++ + PSQF+D+ AL GDK+
Sbjct: 265 RIVSPDKDFFQILSPSLRLLRIAPRGSGMVSFGVEDFVKRYGALKPSQFVDVVALSGDKA 324
Query: 196 DNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQAFLSKTLATIN 255
DNIPGV IG+ +KL++++GSLE + ++++ +++ ++K+ LI+ EQA L K+LAT+
Sbjct: 325 DNIPGVEGIGDINAVKLITKFGSLENLLKSVDEVEEERIKQALISQSEQAMLCKSLATLR 384
Query: 256 IASP---ITIGLEDILYSGPQD 274
P + D+++ P+D
Sbjct: 385 SDLPSYMVPFKTSDLVFQKPKD 406
>gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia
burgdorferi]
gi|6225284|sp|O51498|DPO1_BORBU DNA polymerase I (POL I)
gi|7434818|pir||C70168 DNA polymerase I (polA) homolog - Lyme
disease spirochete
gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia
burgdorferi B31]
Length = 908
Score = 139 bits (351), Expect = 2e-31
Identities = 91/249 (36%), Positives = 137/249 (54%), Gaps = 7/249 (2%)
Query: 6 KLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD 65
+L LID ++ FR + + N N G + NA GF L I+ P H+++ FD
Sbjct: 3 ELYLIDALNIIFRNYHVMKNY--PLLNTQGENVNAFIGFFKTLFFIIKEKNPEHLIITFD 60
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
+ TFR + Y YK R PD+ Q +I++ L I +E+E YEADD++ + AK
Sbjct: 61 SEVPTFRKQKYPSYKATRDLPPDDLIPQIGWIKEGLLKAKIPIFEMEGYEADDLLASFAK 120
Query: 126 QAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITPSQFI 185
+A +N + ++S DKDL+Q + V+I K F E Y+ +K G+ Q
Sbjct: 121 KAAKNN--YLTYIISPDKDLLQ--TMSEYVKILKIENNSFIEMDNEYVTKKFGVNSFQIK 176
Query: 186 DLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQSKMKENLINDKEQA 245
D A++GD+SDNIPG+ IG K LL E+ +L+GIY N+E + + K +E LI +KE A
Sbjct: 177 DYLAIVGDRSDNIPGIKGIGAKGAANLLREFKTLDGIYSNLEIINK-KHRELLIKEKENA 235
Query: 246 FLSKTLATI 254
FLS L ++
Sbjct: 236 FLSYELVSL 244
>gi|21230313|ref|NP_636230.1| exodeoxyribonuclease IX [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|21111863|gb|AAM40154.1| exodeoxyribonuclease IX [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 332
Score = 139 bits (350), Expect = 2e-31
Identities = 97/295 (32%), Positives = 137/295 (45%), Gaps = 31/295 (10%)
Query: 7 LLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHILVAFD- 65
L L+D S FRA+ ++ D F++ G TNA++GF L +L R +P HI +AFD
Sbjct: 25 LYLVDASLYVFRAWHSI---PDEFQDAQGWPTNAVHGFARFLLDLLERERPQHITIAFDE 81
Query: 66 AGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIGTLAK 125
A + FR +Y YKG R PD R QF + + LG+ YEADD+IG+
Sbjct: 82 ALDSCFRHAIYPAYKGNREPAPDALRRQFAHCKALCAALGLSVLAHREYEADDLIGSALH 141
Query: 126 QAEASNEHFDITVVSGDKDLIQLT-------DTNTVVEISKKGVAEFEEFTPAYLMEKMG 178
A A +VS DKDL QL D V GV + G
Sbjct: 142 SARARG--LRGIIVSADKDLSQLLFEHDEQWDYARNVRWGMDGVK-----------ARHG 188
Query: 179 ITPSQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMK------QS 232
+ Q D AL GD DNIPG+T IG K+ LL+ +GSL+ + E ++ + +
Sbjct: 189 VHAHQMADYLALCGDAIDNIPGITGIGAKSAAVLLAHFGSLDALLERLDELPFLRLRGAA 248
Query: 233 KMKENLINDKEQAFLSKTLATINIASPITIGLEDILYSGPQDIKALSQFYDEMDF 287
+M L +E A L + L TI + +P+ + E P D L+ D + F
Sbjct: 249 QMALRLREQREHALLWRQLTTIALDAPLEL-TESGFTRAPADTDMLTGLCDSLRF 302
>gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus
Blochmannia floridanus]
gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus
Blochmannia floridanus]
Length = 943
Score = 137 bits (346), Expect = 7e-31
Identities = 87/265 (32%), Positives = 139/265 (51%), Gaps = 16/265 (6%)
Query: 2 TNKNKLLLIDGSSVAFRAFFALYNQIDRFKNNSGLHTNAIYGFHLMLNHILGRVQPSHIL 61
T N ++L+DGS +RA Y+ +G IYG M+ ++ R QPSH+
Sbjct: 6 TIHNPIILVDGSFYMYRA----YHAYPPLTTQNGQPVWVIYGVISMIKSLITRYQPSHMA 61
Query: 62 VAFDAGKTTFRTEMYADYKGGRAKTPDEFREQFPYIRQQLDVLGIKHYELEHYEADDIIG 121
V FD TFR +++ YK R K PD+ Q + + +GI + + EADD+I
Sbjct: 62 VIFDVSGKTFRDDLFKQYKSNRIKIPDDLSIQIIPTHKIIKAMGISVLNIPNVEADDVIA 121
Query: 122 TLAKQAEASNEHFDITVVSGDKDLIQLTDTNTVVEISKKGVAEFEEFTPAYLMEKMGITP 181
TLA N+ + + +GDKD+ Q+ +N ++ + + P + +K G+ P
Sbjct: 122 TLATFYAQLNK--TVLISTGDKDMAQIVSSNIILINTMSNIM----LNPTEVEKKFGVPP 175
Query: 182 SQFIDLKALMGDKSDNIPGVTKIGEKTGLKLLSEYGSLEGIYENIEAMKQ------SKMK 235
+ D AL+GD++DNIPGV IG+KT +L++ G+L +Y+N+ + Q K+
Sbjct: 176 TLIADYLALVGDRADNIPGVPGIGKKTAQIVLNQIGNLNILYQNLNNILQLNIRGRKKIY 235
Query: 236 ENLINDKEQAFLSKTLATINIASPI 260
+ L+ +KE AFL LATI I P+
Sbjct: 236 QALLINKELAFLCYKLATIKIDVPL 260
Database: nr
Posted date: Aug 11, 2003 9:58 AM
Number of letters in database: 479,114,161
Number of sequences in database: 1,487,057
Lambda K H
0.316 0.135 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 771,226,429
Number of Sequences: 1487057
Number of extensions: 32949130
Number of successful extensions: 101604
Number of sequences better than 1.0e-04: 340
Number of HSP's better than 0.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 99382
Number of HSP's gapped (non-prelim): 545
length of query: 880
length of database: 479,114,161
effective HSP length: 133
effective length of query: 747
effective length of database: 281,335,580
effective search space: 210157678260
effective search space used: 210157678260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 121 (51.2 bits)