BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SAG0094
(191 letters)
Database: nr
1,487,057 sequences; 479,114,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22536279|ref|NP_687130.1| N-acetylmuramoyl-L-alanine amidase,... 318 3e-86
gi|24378601|ref|NP_720556.1| putative N-acetyl-muramidase [Strep... 130 1e-29
gi|4098486|gb|AAD00279.1| putative N-acetyl-muramidase [Streptoc... 113 2e-24
gi|29376865|ref|NP_816019.1| N-acetylmuramoyl-L-alanine amidase,... 111 5e-24
gi|19746717|ref|NP_607853.1| putative N-acetyl-muramidase [Strep... 103 2e-21
gi|21911070|ref|NP_665338.1| putative N-acetyl-muramidase [Strep... 102 4e-21
gi|15675609|ref|NP_269783.1| putative N-acetyl-muramidase [Strep... 101 6e-21
gi|16803255|ref|NP_464740.1| similar to N-acetylmuramoyl-L-alani... 89 3e-17
gi|28377918|ref|NP_784810.1| muramidase [Lactobacillus plantarum... 89 5e-17
gi|16801370|ref|NP_471638.1| similar to N-acetylmuramoyl-L-alani... 86 3e-16
gi|23002691|ref|ZP_00046365.1| hypothetical protein [Lactobacill... 86 5e-16
gi|16804242|ref|NP_465727.1| similar to N-acetylmuramoyl-L-alani... 84 1e-15
gi|14906067|gb|AAK72496.1| putative glycosidase GlyA [Enterococc... 83 2e-15
gi|22992252|ref|ZP_00036908.1| hypothetical protein [Enterococcu... 83 2e-15
gi|15673347|ref|NP_267521.1| N-acetylmuramidase [Lactococcus lac... 83 2e-15
gi|16800133|ref|NP_470401.1| similar to autolysin (amidase) [Lis... 80 2e-14
gi|16800247|ref|NP_470515.1| similar to N-acetylmuramoyl-L-alani... 80 2e-14
gi|23092320|gb|AAN08645.1| FlgJ [Aeromonas hydrophila] 77 2e-13
gi|13160475|gb|AAK13250.1|AF176553_1 N-acetyl muramidase [Leucon... 76 3e-13
gi|16804629|ref|NP_466114.1| surface protein (GW repeat) similar... 75 8e-13
gi|23037785|ref|ZP_00069988.1| hypothetical protein [Oenococcus ... 74 1e-12
gi|23023972|ref|ZP_00063198.1| hypothetical protein [Leuconostoc... 73 3e-12
gi|16800248|ref|NP_470516.1| similar to N-acetylmuramoyl-L-alani... 73 3e-12
gi|16080164|ref|NP_390990.1| similar to N-acetylmuramoyl-L-alani... 72 5e-12
gi|32041090|ref|ZP_00138673.1| hypothetical protein [Pseudomonas... 70 1e-11
gi|15596282|ref|NP_249776.1| flagellar protein FlgJ [Pseudomonas... 70 1e-11
gi|16803256|ref|NP_464741.1| similar to N-acetylmuramoyl-L-alani... 70 2e-11
gi|16801799|ref|NP_472067.1| surface protein (GW repeat) similar... 70 2e-11
gi|29374894|ref|NP_814047.1| N-acetylmuramoyl-L-alanine amidase,... 70 3e-11
gi|23059993|ref|ZP_00084921.1| hypothetical protein [Pseudomonas... 69 4e-11
gi|23037200|ref|ZP_00069412.1| hypothetical protein [Oenococcus ... 67 1e-10
gi|22855012|ref|NP_690772.1| ORF39 [Bacteriophage phi-105] >gnl|... 64 1e-09
gi|24374752|ref|NP_718795.1| flagellar protein FlgJ [Shewanella ... 64 1e-09
gi|29376366|ref|NP_815520.1| N-acetylmuramoyl-L-alanine amidase,... 64 2e-09
gi|27469149|ref|NP_765786.1| autolysin precursor [Staphylococcus... 64 2e-09
gi|23026588|ref|ZP_00065061.1| hypothetical protein [Microbulbif... 62 5e-09
gi|23471961|ref|ZP_00127289.1| hypothetical protein [Pseudomonas... 62 6e-09
gi|26991071|ref|NP_746496.1| peptidoglycan hydrolase FlgJ [Pseud... 61 1e-08
gi|16803116|ref|NP_464601.1| similar to autolysin (EC 3.5.1.28) ... 60 2e-08
gi|28869147|ref|NP_791766.1| peptidoglycan hydrolase FlgJ [Pseud... 60 2e-08
gi|23037173|ref|ZP_00069385.1| hypothetical protein [Oenococcus ... 57 1e-07
gi|21284294|ref|NP_647382.1| ORFID:MW2565~hypothetical protein, ... 57 1e-07
gi|15925634|ref|NP_373168.1| hypothetical protein [Staphylococcu... 57 1e-07
gi|30248327|ref|NP_840397.1| Mannosyl-glycoprotein endo-beta-N-a... 57 2e-07
gi|27363700|ref|NP_759228.1| Muramidase [Vibrio vulnificus CMCP6... 57 2e-07
gi|29377113|ref|NP_816267.1| N-acetylmuramoyl-L-alanine amidase,... 56 3e-07
gi|28210191|ref|NP_781135.1| conserved phage protein [Clostridiu... 56 3e-07
gi|15672254|ref|NP_266428.1| N-acetylmuramidase [Lactococcus lac... 55 6e-07
gi|26247221|ref|NP_753261.1| Peptidoglycan hydrolase flgJ [Esche... 55 9e-07
gi|16129044|ref|NP_415599.1| FlgJ [Escherichia coli K12] >gnl|BL... 54 1e-06
gi|15801198|ref|NP_287215.1| flagellar biosynthesis [Escherichia... 54 1e-06
gi|24112489|ref|NP_706999.1| flagellar biosynthesis [Shigella fl... 53 3e-06
gi|2707292|gb|AAB93629.1| N-acetylmuramidase [Lactococcus lactis] 53 3e-06
gi|30062617|ref|NP_836788.1| flagellar basal body protein FlgJ [... 53 3e-06
gi|28897558|ref|NP_797163.1| peptidoglycan hydrolase FlgJ [Vibri... 52 4e-06
gi|15213921|sp|Q48603|ACMA_LACLC Probable N-acetylmuramidase pre... 52 4e-06
gi|15673889|ref|NP_268064.1| N-acetylmuramidase [Lactococcus lac... 52 6e-06
gi|22796421|emb|CAC93669.1| peptidoglycan hydrolase [Lactococcus... 52 6e-06
gi|33152063|ref|NP_873416.1| conserved hypothetical protein [Hae... 52 7e-06
gi|31194971|ref|XP_306433.1| ENSANGP00000001769 [Anopheles gambi... 52 7e-06
gi|15672523|ref|NP_266697.1| N-acetylmuramidase [Lactococcus lac... 51 9e-06
gi|22987093|ref|ZP_00032178.1| hypothetical protein [Burkholderi... 51 1e-05
gi|22538050|ref|NP_688901.1| N-acetylmuramoyl-L-alanine amidase,... 51 1e-05
gi|16801898|ref|NP_472166.1| similar to autolysin, N-acetylmuram... 51 1e-05
gi|21242722|ref|NP_642304.1| flagellar protein [Xanthomonas axon... 50 2e-05
gi|21231392|ref|NP_637309.1| flagellar protein [Xanthomonas camp... 50 2e-05
gi|28379158|ref|NP_786050.1| muramidase [Lactobacillus plantarum... 50 2e-05
gi|23037709|ref|ZP_00069913.1| hypothetical protein [Oenococcus ... 49 5e-05
gi|16804728|ref|NP_466213.1| similar to autolysin, N-acetylmuram... 49 6e-05
gi|2394284|gb|AAB70257.1| hemagglutinin [Prevotella intermedia] 48 1e-04
>gi|22536279|ref|NP_687130.1| N-acetylmuramoyl-L-alanine amidase,
family 4 protein [Streptococcus agalactiae 2603V/R]
gi|25010168|ref|NP_734563.1| Unknown [Streptococcus agalactiae
NEM316]
gi|22533100|gb|AAM99002.1|AE014195_21 N-acetylmuramoyl-L-alanine
amidase, family 4 protein [Streptococcus agalactiae
2603V/R]
gi|23094519|emb|CAD45738.1| Unknown [Streptococcus agalactiae
NEM316]
Length = 191
Score = 318 bits (815), Expect = 3e-86
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGK 60
MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGK
Sbjct: 1 MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGK 60
Query: 61 SYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTH 120
SYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTH
Sbjct: 61 SYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTH 120
Query: 121 YKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
YKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI
Sbjct: 121 YKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
Query: 181 IDLYDLTRYDK 191
IDLYDLTRYDK
Sbjct: 181 IDLYDLTRYDK 191
>gi|24378601|ref|NP_720556.1| putative N-acetyl-muramidase
[Streptococcus mutans UA159]
gi|24376455|gb|AAN57862.1|AE014859_6 putative N-acetyl-muramidase
[Streptococcus mutans UA159]
Length = 195
Score = 130 bits (328), Expect = 1e-29
Identities = 80/195 (41%), Positives = 117/195 (59%), Gaps = 4/195 (2%)
Query: 1 MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGK 60
MR R +F+V+ + IL P+L G DAN + Y+ +EF+++I P AQ L K
Sbjct: 1 MRARLKFKSFVVIVLLLLLVILLPILASGGLADANKKMPSPYSHKEFVKEIAPTAQKLSK 60
Query: 61 SYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITL--NDSSTGKKQE--K 116
YG+R S II QAALDS FG +LA+KYHNLF + A PG ++ L ++ G+ QE
Sbjct: 61 IYGVRSSIIIGQAALDSHFGSTLLASKYHNLFSIEASPGQGAVRLKSHEYKNGRWQEVTN 120
Query: 117 QFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKK 176
++ Y+SWK S+YDY+A + K YT M++ KT+ + LQ +GF++D YA K
Sbjct: 121 RYLVYESWKESLYDYMAILHGNKIWDKALYTTMMTSSGYKTVARALQAAGFNSDPNYADK 180
Query: 177 MTEIIDLYDLTRYDK 191
+ +I+ +LT YDK
Sbjct: 181 LIAVIEENNLTDYDK 195
>gi|4098486|gb|AAD00279.1| putative N-acetyl-muramidase
[Streptococcus mutans]
Length = 158
Score = 113 bits (282), Expect = 2e-24
Identities = 65/153 (42%), Positives = 94/153 (60%), Gaps = 4/153 (2%)
Query: 21 ILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFG 80
IL P+L G DAN + Y+ +EF+++I P AQ L K YG+R S II QAALDS FG
Sbjct: 6 ILLPILASGGLADANKKMPSPYSHKEFVKEIAPTAQKLSKIYGVRSSIIIGQAALDSHFG 65
Query: 81 EKILANKYHNLFGLLAEPGTPSITL--NDSSTGKKQE--KQFTHYKSWKYSMYDYLAHIK 136
+LA+KYHNLF + A PG ++ L ++ G+ QE ++ Y+SWK S+YDY+A +
Sbjct: 66 STLLASKYHNLFSIEASPGQGAVRLKSHEYKNGRWQEVTNRYLVYESWKESLYDYMAILH 125
Query: 137 SGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDN 169
K YT M++ KT+ + LQ +GF++
Sbjct: 126 GNKIWDKALYTTMMTSSGYKTVARALQAAGFNS 158
>gi|29376865|ref|NP_816019.1| N-acetylmuramoyl-L-alanine amidase,
family 4 [Enterococcus faecalis V583]
gi|29344330|gb|AAO82089.1| N-acetylmuramoyl-L-alanine amidase,
family 4 [Enterococcus faecalis V583]
Length = 213
Score = 111 bits (278), Expect = 5e-24
Identities = 65/188 (34%), Positives = 104/188 (54%), Gaps = 4/188 (2%)
Query: 8 LNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPS 67
L +VV F F + + KG+ ++ +RQ+ +KEEF+ +I P A++L +SYG+ PS
Sbjct: 26 LGVVVVGLAFVFSLSVLSDSDKGQSESVNRQNENISKEEFVAEITPYARELQESYGVLPS 85
Query: 68 FIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQ----EKQFTHYKS 123
I+ QA L+S+FG+ LA+KY+NLFG+ A P + L + + F Y +
Sbjct: 86 IIMGQAVLESNFGQSQLASKYNNLFGIKAYGNQPKVNLETKEYVNEVWITIQGDFRVYDN 145
Query: 124 WKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDL 183
W+ SM D+ G + Y ++ KN K Q LQD+G+ D YA K+ +I+
Sbjct: 146 WEESMRDHTKLFVDGVDWDPNLYEKVLLAKNYKEAAQALQDAGYATDPTYADKIIHVIEE 205
Query: 184 YDLTRYDK 191
Y+L +YD+
Sbjct: 206 YNLNKYDR 213
>gi|19746717|ref|NP_607853.1| putative N-acetyl-muramidase
[Streptococcus pyogenes MGAS8232]
gi|19748942|gb|AAL98352.1| putative N-acetyl-muramidase
[Streptococcus pyogenes MGAS8232]
Length = 189
Score = 103 bits (256), Expect = 2e-21
Identities = 67/190 (35%), Positives = 103/190 (53%), Gaps = 1/190 (0%)
Query: 1 MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGK 60
MRKR F+ + F I+ PLL+ + A+ V Y++++FI K+ + + L K
Sbjct: 1 MRKRLKFPYFLTLLACFLLLIVCPLLSSQRIASADKEVRVNYSQKQFITKMGKEVKPLAK 60
Query: 61 SYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTH 120
YGIRPS +IAQ L++ G+ +LA+KYHNLF A PG +ITL S Q ++
Sbjct: 61 YYGIRPSILIAQILLETHDGKTLLASKYHNLFSKKATPGQAAITLK-SPKQTNQNVRYAI 119
Query: 121 YKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
YK ++ DYL ++ G K Y + + K K + LQ + DK YA+++ ++
Sbjct: 120 YKDDASAIRDYLRMLRQGKEVDKRLYRNLATEKGYKAPAKSLQKYLYYTDKTYARRLIQV 179
Query: 181 IDLYDLTRYD 190
I+ DLT YD
Sbjct: 180 IESNDLTNYD 189
>gi|21911070|ref|NP_665338.1| putative N-acetyl-muramidase
[Streptococcus pyogenes MGAS315]
gi|28895244|ref|NP_801594.1| putative N-acetyl-muramidase
[Streptococcus pyogenes SSI-1]
gi|21905279|gb|AAM80141.1| putative N-acetyl-muramidase
[Streptococcus pyogenes MGAS315]
gi|28810490|dbj|BAC63427.1| putative N-acetyl-muramidase
[Streptococcus pyogenes SSI-1]
Length = 189
Score = 102 bits (253), Expect = 4e-21
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 1/190 (0%)
Query: 1 MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGK 60
MRKR F+ + F I+ PLL+ + A+ V Y++++FI K+ + + L K
Sbjct: 1 MRKRLKFPYFLTLLACFLLLIVCPLLSSQRIASADKEVRVNYSQKQFITKMGKEVKPLAK 60
Query: 61 SYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTH 120
YGIRPS +IAQ L++ G+ +LA+KYHNLF A PG +ITL S Q ++
Sbjct: 61 YYGIRPSILIAQILLETHDGKTLLASKYHNLFSKKATPGQAAITLK-SPKQTNQNVRYAI 119
Query: 121 YKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
YK ++ DYL ++ G K Y + + K K + LQ DK YA+++ ++
Sbjct: 120 YKDDASAIRDYLRMLRQGKEVDKRLYRNLATEKGYKAPAKSLQKYLHYTDKTYARRLIQV 179
Query: 181 IDLYDLTRYD 190
I+ DLT YD
Sbjct: 180 IESNDLTNYD 189
>gi|15675609|ref|NP_269783.1| putative N-acetyl-muramidase
[Streptococcus pyogenes]
gi|13622816|gb|AAK34504.1| putative N-acetyl-muramidase
[Streptococcus pyogenes M1 GAS]
Length = 189
Score = 101 bits (252), Expect = 6e-21
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 1/190 (0%)
Query: 1 MRKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGK 60
MRKR F+ + F I+ PLL+ + A+ V Y++++FI K+ + + L K
Sbjct: 1 MRKRLKFPYFLTLLACFLLLIVCPLLSSQRIASADKEVRVNYSQKQFITKMGKEVKPLAK 60
Query: 61 SYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTH 120
YGIRPS +IAQ L++ G+ +LA+KYHNLF A PG +ITL S Q ++
Sbjct: 61 YYGIRPSILIAQILLETHDGKTLLASKYHNLFSKKATPGQVAITLK-SPKQTNQNVRYAI 119
Query: 121 YKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
YK ++ DYL ++ G K Y + + K K + LQ DK YA+++ ++
Sbjct: 120 YKDDASAIRDYLRMLRQGKEVDKRLYRNLATEKGYKAPAKSLQKYLHYTDKTYARRLIQV 179
Query: 181 IDLYDLTRYD 190
I+ DLT YD
Sbjct: 180 IESNDLTNYD 189
>gi|16803255|ref|NP_464740.1| similar to N-acetylmuramoyl-L-alanine
amidase (autolysin) [Listeria monocytogenes EGD-e]
gi|25516675|pir||AG1226 N-acetylmuramoyl-L-alanine amidase
(autolysin) homolog lmo1215 [imported] - Listeria
monocytogenes (strain EGD-e)
gi|16410631|emb|CAC99293.1| lmo1215 [Listeria monocytogenes]
Length = 289
Score = 89.4 bits (220), Expect = 3e-17
Identities = 51/152 (33%), Positives = 84/152 (54%), Gaps = 4/152 (2%)
Query: 44 KEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSI 103
++ F+ ++ P AQ++ + +GI S +AQA L+SD+G+ LA K +NLFG+ + P +
Sbjct: 55 EQNFLNELSPRAQEIQEKHGILTSITLAQAILESDWGQSGLAQKGNNLFGVKGKSPQPMV 114
Query: 104 TLNDSS--TGKKQE--KQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLV 159
T+ GK E F YK W S+ + +G + KD Y +++ + K
Sbjct: 115 TMTTKEFVDGKWIEINANFRKYKDWNESLDSHAELFLNGTSWNKDKYNGVIAADDYKKAA 174
Query: 160 QKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
Q+LQ +G+ D YA+K+ II+ YDL YD+
Sbjct: 175 QELQSAGYATDPDYAEKLINIIEKYDLALYDR 206
>gi|28377918|ref|NP_784810.1| muramidase [Lactobacillus plantarum
WCFS1]
gi|28270752|emb|CAD63657.1| muramidase [Lactobacillus plantarum
WCFS1]
Length = 213
Score = 88.6 bits (218), Expect = 5e-17
Identities = 52/153 (33%), Positives = 83/153 (53%), Gaps = 3/153 (1%)
Query: 41 TYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGT 100
T T FI+K+VP AQ L + Y + S ++QA L+SD+G+ A + +NLFG+ ++ G
Sbjct: 61 TTTHAAFIKKLVPAAQQLDQQYHVLASITLSQAILESDWGQSTNATENNNLFGVKSKSGR 120
Query: 101 PSITLNDSSTGKKQ--EKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTL 158
+T + G +++F Y SW S+ D+ + G T Y ++ + +T
Sbjct: 121 -LMTTQEYYDGAYHTVKRRFAVYDSWHASLVDHAKKLAYGTTWDSQHYAAVIKATDYQTA 179
Query: 159 VQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
Q LQ +G+ D YA+K+ II YDL RYD+
Sbjct: 180 AQALQTAGYATDPSYAQKLINIIQKYDLQRYDR 212
>gi|16801370|ref|NP_471638.1| similar to N-acetylmuramoyl-L-alanine
amidase and to internalin B [Listeria innocua]
gi|25516451|pir||AF1720 N-acetylmuramoyl-L-alanine amidase and to
internalin B homolog lin2306 [imported] - Listeria
innocua (strain Clip11262)
gi|16414818|emb|CAC97534.1| lin2306 [Listeria innocua]
Length = 375
Score = 86.3 bits (212), Expect = 3e-16
Identities = 55/162 (33%), Positives = 87/162 (52%), Gaps = 4/162 (2%)
Query: 34 ANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFG 93
A S+ +T ++++FIQ I DAQDL K I S +AQA L+S++GE L+ +NLFG
Sbjct: 42 AVSQAGMTLSQQQFIQSIASDAQDLQKEEKILTSVTLAQAILESNWGESGLSTSANNLFG 101
Query: 94 LLA--EPGTPSITLNDSSTGKKQEKQ--FTHYKSWKYSMYDYLAHIKSGATGKKDSYTIM 149
+ E + S+ + S GK Q F Y K S+ D+ +G +G D Y+ +
Sbjct: 102 IKGSYEGSSVSMGTQEFSNGKAYHTQADFRKYPDKKSSLVDHAQLFINGVSGNPDLYSAV 161
Query: 150 VSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
+ + K +QD+G+ D YA+K+ I+ Y+L YD+
Sbjct: 162 IGETDYKKAAHAIQDAGYATDPTYAEKLISTIETYNLDDYDQ 203
>gi|23002691|ref|ZP_00046365.1| hypothetical protein [Lactobacillus
gasseri]
Length = 208
Score = 85.5 bits (210), Expect = 5e-16
Identities = 60/205 (29%), Positives = 102/205 (49%), Gaps = 16/205 (7%)
Query: 2 RKRFSLLNFIVVTFIFFFFILFPLLN------HKGKVDANSRQS------VTYTKEEFIQ 49
R+R + +++ F L +L+ H+ V+ RQ+ +KE FI+
Sbjct: 4 RRRQKNIQYVIARAFAICFTLVVILSGFLYWRHEVAVNEQLRQARLEKERALQSKERFIK 63
Query: 50 KIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSS 109
+ P AQ K YG+ PS IAQA L+S+FG+ L+ KY+NLFG+ S L S
Sbjct: 64 IVAPIAQRADKPYGLFPSVTIAQACLESNFGQSELSKKYYNLFGVKGTDPNTSRELTTSE 123
Query: 110 TGKKQEK----QFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDS 165
+ +F Y S++ S+ + +G + K+ Y +++ K+ + Q L+
Sbjct: 124 FVNDHWETVTGRFQVYNSYEESIQAHTRLFVNGTSWNKNQYQHVLAAKDYISQAQALETD 183
Query: 166 GFDNDKKYAKKMTEIIDLYDLTRYD 190
G+ D YAKK+ ++I ++LT+YD
Sbjct: 184 GYATDPGYAKKLIDLIKEFNLTQYD 208
>gi|16804242|ref|NP_465727.1| similar to N-acetylmuramoyl-L-alanine
amidase and to internalin B [Listeria monocytogenes
EGD-e]
gi|25514439|pir||AC1350 N-acetylmuramoyl-L-alanine amidase and to
internalin B homolog lmo2203 [imported] - Listeria
monocytogenes (strain EGD-e)
gi|16411673|emb|CAD00281.1| lmo2203 [Listeria monocytogenes]
Length = 375
Score = 84.0 bits (206), Expect = 1e-15
Identities = 53/160 (33%), Positives = 88/160 (54%), Gaps = 4/160 (2%)
Query: 36 SRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLL 95
S+ +T ++++FIQ I DAQDL K I S +AQA L+S++G+ L+ +NLFG+
Sbjct: 44 SQAGMTLSQQQFIQSIANDAQDLQKEEKILTSVTLAQAILESNWGKSGLSTSANNLFGIK 103
Query: 96 A--EPGTPSITLNDSSTGKKQEKQ--FTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVS 151
E + S+ + S+GK Q F Y K S+ D+ +G +G + Y+ ++
Sbjct: 104 GSYEGSSVSMGTQEFSSGKAYHTQADFRKYPDKKASLVDHAQLFVNGVSGNANLYSAVIG 163
Query: 152 VKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
N K +QD+G+ D YA+K+ I+ Y+L +YD+
Sbjct: 164 ETNYKEAAYAIQDAGYATDPAYAEKLISTIENYNLDQYDQ 203
>gi|14906067|gb|AAK72496.1| putative glycosidase GlyA [Enterococcus
faecium]
Length = 714
Score = 83.2 bits (204), Expect = 2e-15
Identities = 62/168 (36%), Positives = 95/168 (55%), Gaps = 9/168 (5%)
Query: 32 VDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHN 90
+D + S T ++F++KI DAQ++G+ GI S ++AQA L+S G +L+++ HN
Sbjct: 445 LDGSFHFSQNQTTDQFLKKIADDAQEIGQKEGIYASVMMAQAILESGSGNSLLSSEPNHN 504
Query: 91 LFGLLAEPGTPSITLN----DSSTGKKQ-EKQFTHYKSWKYSMYDYLAHIKSGATGKKDS 145
LFG+ S+T N DSS Q QF Y S+K S+ DY IK+G TG D
Sbjct: 505 LFGIKGSYKGSSVTFNTLEQDSSGQSYQIRAQFRKYPSYKESLEDYADLIKNGLTGNPDF 564
Query: 146 Y--TIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
Y T K+ K + L+ + D++Y++K+ II+ YDLT+YD+
Sbjct: 565 YKPTWKSETKDYKEATKYLEGR-YATDRQYSQKLNAIIEAYDLTKYDE 611
>gi|22992252|ref|ZP_00036908.1| hypothetical protein [Enterococcus
faecium]
Length = 487
Score = 83.2 bits (204), Expect = 2e-15
Identities = 62/168 (36%), Positives = 95/168 (55%), Gaps = 9/168 (5%)
Query: 32 VDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHN 90
+D + S T ++F++KI DAQ++G+ GI S ++AQA L+S G +L+++ HN
Sbjct: 236 LDGSFHFSQNQTTDQFLKKIADDAQEIGQKEGIYASVMMAQAILESGSGNSLLSSEPNHN 295
Query: 91 LFGLLAEPGTPSITLN----DSSTGKKQ-EKQFTHYKSWKYSMYDYLAHIKSGATGKKDS 145
LFG+ S+T N DSS Q QF Y S+K S+ DY IK+G TG D
Sbjct: 296 LFGIKGSYKGSSVTFNTLEQDSSGQSYQIRAQFRKYPSYKESLEDYADLIKNGLTGNPDF 355
Query: 146 Y--TIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
Y T K+ K + L+ + D++Y++K+ II+ YDLT+YD+
Sbjct: 356 YKPTWKSETKDYKEATKYLEGR-YATDRQYSQKLNAIIEAYDLTKYDE 402
>gi|15673347|ref|NP_267521.1| N-acetylmuramidase [Lactococcus lactis
subsp. lactis]
gi|25401614|pir||E86795 N-acetylmuramoyl-L-alanine amidase (EC
3.5.1.28) [imported] - Lactococcus lactis subsp. lactis
(strain IL1403)
gi|12724349|gb|AAK05463.1|AE006368_7 N-acetylmuramidase (EC
3.5.1.28) [Lactococcus lactis subsp. lactis]
Length = 209
Score = 82.8 bits (203), Expect = 2e-15
Identities = 60/195 (30%), Positives = 98/195 (49%), Gaps = 7/195 (3%)
Query: 3 KRFSLLNFIVVTFIFFFFILF--PLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGK 60
+R SLL ++ F+ IL + N++ + + + Q + +FI++I P AQ K
Sbjct: 12 RRQSLLKQLIFIFLVILGILVYNKIFNNQAQKPSEA-QLQEINEHKFIKEIAPLAQKSQK 70
Query: 61 SYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQ----EK 116
+ S IAQA L+S+FG+ LA+KYHNLFG+ A P ++L Q +
Sbjct: 71 ESQVLASITIAQACLESNFGKSELASKYHNLFGVKASDDVPKVSLATQEYENGQWVTVQG 130
Query: 117 QFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKK 176
F Y ++ S+ + G T Y ++S + KT + +Q+SG+ D YA K
Sbjct: 131 VFRVYPNFADSVSAHTQLFLYGTTWNSKQYASVLSATDYKTAAKAVQNSGYATDPTYADK 190
Query: 177 MTEIIDLYDLTRYDK 191
+ +I+ Y L +YDK
Sbjct: 191 LINMIETYHLNQYDK 205
>gi|16800133|ref|NP_470401.1| similar to autolysin (amidase)
[Listeria innocua]
gi|25516878|pir||AG1565 autolysin (amidase) homolog lin1064
[imported] - Listeria innocua (strain Clip11262)
gi|16413523|emb|CAC96295.1| lin1064 [Listeria innocua]
Length = 774
Score = 80.1 bits (196), Expect = 2e-14
Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 35 NSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGL 94
+++ + T +++ FI KI P AQ + Y + S +AQA L+S +G+ LA + +NLFG+
Sbjct: 42 DAQAATTASQQAFIDKIAPAAQASQEKYHLLSSITLAQAILESGWGKSGLATQGYNLFGI 101
Query: 95 LAEPGTPSITLNDSS--TGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMV 150
+ S+ ++ S G+ K + +F Y SW S+ D+ + +G + K+ Y +V
Sbjct: 102 KGKYNGQSVIMSTSEYVNGEWIKIDAEFRKYPSWNESVTDHTLLLVNGTSWNKNLYKKVV 161
Query: 151 SVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
+ K +LQ +G+ YA + +I+ YDL +YD
Sbjct: 162 DATDYKVAANELQKAGYATSPTYAASLIRVIETYDLAKYD 201
>gi|16800247|ref|NP_470515.1| similar to N-acetylmuramoyl-L-alanine
amidase (autolysin) [Listeria innocua]
gi|25517802|pir||AI1579 N-acetylmuramoyl-L-alanine amidase
(autolysin) homolog lin1178 [imported] - Listeria
innocua (strain Clip11262)
gi|16413637|emb|CAC96409.1| lin1178 [Listeria innocua]
Length = 289
Score = 80.1 bits (196), Expect = 2e-14
Identities = 48/152 (31%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Query: 44 KEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTP-- 101
++ F+ ++ P AQ++ +GI S +AQA L+S++G+ LA + +NLFG+ + P
Sbjct: 55 EQNFLNELSPRAQEIQAEHGILTSITLAQAILESNWGQSDLAQQGNNLFGVKGKAPQPMV 114
Query: 102 SITLNDSSTGKKQE--KQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLV 159
++T + GK E F YK W S+ + G + KD Y ++ + K
Sbjct: 115 NMTTKEFVDGKWIEIKANFRKYKDWNESLEAHAELFLKGTSWNKDKYNGVIKADDYKKAA 174
Query: 160 QKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
++LQ +G+ D YA+K+ II+ YDL YD+
Sbjct: 175 EELQTAGYATDPGYAEKLINIIEKYDLALYDR 206
>gi|23092320|gb|AAN08645.1| FlgJ [Aeromonas hydrophila]
Length = 358
Score = 77.0 bits (188), Expect = 2e-13
Identities = 46/171 (26%), Positives = 87/171 (49%), Gaps = 14/171 (8%)
Query: 29 KGKVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKY 88
+G + V T EEF+ +++P A+ G+ P+ ++AQAAL+S +G++++ +
Sbjct: 187 QGTKAVDKTAQVFETPEEFVNRLMPLAKKAADKLGLSPAVLVAQAALESGWGKRVIKDGE 246
Query: 89 ----HNLFGLLAEP------GTPSITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSG 138
HNLFG+ A+P S + +Q+ F Y+S++ S DY+ + SG
Sbjct: 247 GQVNHNLFGIKADPRWEGPKAVVSTLEYEQGVASRQKASFRSYESFEESFNDYVDFLTSG 306
Query: 139 ATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRY 189
+ K + V NP + LQ +G+ D +YA+K+ +++ + +Y
Sbjct: 307 SRYKG----ALAKVDNPDRYFEALQQAGYATDPQYARKLKQVLRSDAIAQY 353
>gi|13160475|gb|AAK13250.1|AF176553_1 N-acetyl muramidase
[Leuconostoc citreum]
Length = 209
Score = 75.9 bits (185), Expect = 3e-13
Identities = 45/162 (27%), Positives = 80/162 (48%), Gaps = 4/162 (2%)
Query: 33 DANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLF 92
+A + V +I ++ P A+ + + YG+ S IAQA L+SD+ L+ +Y+NLF
Sbjct: 44 NAQGQDVVRQQNIAWINQLAPYARLMQEKYGVIASISIAQAILESDWHTSTLSPQYNNLF 103
Query: 93 GLLAEPGTPSITLNDSSTGKKQ----EKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTI 148
G+ A+ G S+ L + + +F Y SW+ SM + + G + Y
Sbjct: 104 GIKADAGQKSVVLPTQEFQNGEWVTIQGRFAAYDSWQESMKAHAELLYHGTSWNAAQYQH 163
Query: 149 MVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
+++ K+ + L G+ D YA+K+ II + L+R+D
Sbjct: 164 VLAAKDYQAAANALTKDGYATDPTYAEKLIAIIQTWHLSRFD 205
>gi|16804629|ref|NP_466114.1| surface protein (GW repeat) similar to
N-acetylmuramidase [Listeria monocytogenes EGD-e]
gi|25516788|pir||AG1398 N-acetylmuramidase homolog lmo2591
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16412079|emb|CAD00669.1| surface protein (GW repeat) similar to
N-acetylmuramidase [Listeria monocytogenes]
Length = 508
Score = 74.7 bits (182), Expect = 8e-13
Identities = 46/152 (30%), Positives = 76/152 (49%), Gaps = 5/152 (3%)
Query: 39 SVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEP 98
++T +++ FI +I+P AQD + + S +AQA L+S++GE L+ NLFG+
Sbjct: 37 NLTTSQQAFIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSKNLFGIKGTY 96
Query: 99 GTPSITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTL 158
S+++ F Y SWK S+ D+ A I A Y V + +
Sbjct: 97 KGKSVSMGTMEASGSTTANFRVYPSWKESIEDHTALITENA-----RYQDAVDETDYRKA 151
Query: 159 VQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
+Q ++D G+ D Y K+ II+ Y+L +YD
Sbjct: 152 LQAIKDGGYATDPDYVSKLVAIIERYNLDKYD 183
>gi|23037785|ref|ZP_00069988.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 191
Score = 74.3 bits (181), Expect = 1e-12
Identities = 53/189 (28%), Positives = 94/189 (49%), Gaps = 8/189 (4%)
Query: 8 LNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPS 67
L F++ + ++FI +N ++D + ++ +++FI K+ P Q K GI S
Sbjct: 5 LVFLLTFSLTYYFISESSIND--QIDMTNHENTLIAEQKFIDKVAPYIQKRQKKDGILAS 62
Query: 68 FIIAQAALDSDFGEKILANKYHNLFGL--LAEPGTPSITLNDSSTGKKQ----EKQFTHY 121
IAQ L+SD+G+ LA+KYHN FG+ ++ ++ ++ Q + F Y
Sbjct: 63 ITIAQMILESDWGKSSLASKYHNYFGVKSTSDDAKKTVKIDTQEYVNGQWVTVKGTFAVY 122
Query: 122 KSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEII 181
K+W+ S+Y + G T K Y +++ KN + L + + D YAKK+ ++
Sbjct: 123 KNWQESVYQHNRLFLKGTTWNKKQYKDVINAKNYTDGTKALVKNAYATDPDYAKKIIRLV 182
Query: 182 DLYDLTRYD 190
+ Y L YD
Sbjct: 183 ERYHLDIYD 191
>gi|23023972|ref|ZP_00063198.1| hypothetical protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 429
Score = 72.8 bits (177), Expect = 3e-12
Identities = 52/164 (31%), Positives = 84/164 (50%), Gaps = 6/164 (3%)
Query: 34 ANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFG 93
A S +S + F+ KI P AQ L K YGI S IAQAA +S++ L++KY+N FG
Sbjct: 266 ATSGKSEFEHRLAFVNKIAPYAQTLSKKYGILASISIAQAAHESNWDNSKLSSKYNNYFG 325
Query: 94 LLAEPGTPSITLNDSST----GK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYT 147
+ + T ++ +T GK Q+ +F Y WK SM ++ + +G T + +
Sbjct: 326 VKTQDETAGKSVVLETTEYVDGKPETQKARFAVYSDWKDSMKEHAETLVNGNTWNPNQFQ 385
Query: 148 IMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
++ KN K + L + D Y K + +I+ ++L R+DK
Sbjct: 386 DVLDAKNYKEAAKALYKDSYATDVNYPKLIINLIETWNLQRFDK 429
>gi|16800248|ref|NP_470516.1| similar to N-acetylmuramoyl-L-alanine
amidase (autolysin) [Listeria innocua]
gi|25514086|pir||AB1580 N-acetylmuramoyl-L-alanine amidase
(autolysin) homolog lin1179 [imported] - Listeria
innocua (strain Clip11262)
gi|16413638|emb|CAC96410.1| lin1179 [Listeria innocua]
Length = 328
Score = 72.8 bits (177), Expect = 3e-12
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 4/161 (2%)
Query: 34 ANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFG 93
A +T +E FI +I P AQ + + +GI S I+QA L+S++GE +LA +NLFG
Sbjct: 21 AGLEDGLTSKQERFINEIAPHAQKVQREHGILASITISQAILESNWGESMLAKDGNNLFG 80
Query: 94 LLAEPGTPSITL----NDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIM 149
+ SI L ++ + F Y W SM D+ +G + Y +
Sbjct: 81 IKGSYNGASIKLPTKEHNGLVWVGTDANFRAYPGWYESMNDHALLFVNGPSWNPHLYGGL 140
Query: 150 VSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
+ N + L +G+ +D +YA K+ ++I +L +YD
Sbjct: 141 IKEYNFEKAAIALGKTGYSSDPEYAAKLIDLIKKANLDKYD 181
>gi|16080164|ref|NP_390990.1| similar to N-acetylmuramoyl-L-alanine
amidase [Bacillus subtilis]
gi|7475660|pir||H70006 N-acetylmuramoyl-L-alanine amidase homolog
yubE - Bacillus subtilis
gi|2635596|emb|CAB15090.1| yubE [Bacillus subtilis subsp. subtilis
str. 168]
Length = 282
Score = 72.0 bits (175), Expect = 5e-12
Identities = 58/196 (29%), Positives = 95/196 (47%), Gaps = 7/196 (3%)
Query: 1 MRKRFSLLN-FIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLG 59
++KR L++ F +V+ F+L L+ ++ + + ++ FI + AQ L
Sbjct: 6 LKKRKLLISLFFLVSIPLALFVLATTLSKPIEISKETEE--IDEQQVFIDSLSGHAQILY 63
Query: 60 KSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLNDSSTGKKQEK--- 116
+ Y + PS IAQA L+SD+G LA K +NLFG+ +T+ K + K
Sbjct: 64 EKYHVLPSITIAQAILESDWGNSELAAKANNLFGVKGNYKGHHVTMETDEVEKGKRKTIR 123
Query: 117 -QFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAK 175
+F Y ++ SM D+ G + K Y ++ N K LQ SG+ D YA
Sbjct: 124 AKFRKYSTFFESMDDHAQLFVRGTSWNKKKYKPVLEAGNYKEAATALQTSGYATDPDYAD 183
Query: 176 KMTEIIDLYDLTRYDK 191
K++ I++ YDL YD+
Sbjct: 184 KISAIVEKYDLDEYDE 199
>gi|32041090|ref|ZP_00138673.1| hypothetical protein [Pseudomonas
aeruginosa UCBPP-PA14]
Length = 400
Score = 70.5 bits (171), Expect = 1e-11
Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 14/153 (9%)
Query: 38 QSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK----YHNLFG 93
+S+ + +EFI ++P AQ + G+ +++AQAAL++ +G+ I+ + HNLFG
Sbjct: 233 KSMFASADEFIATMLPMAQKAAERIGVDARYLVAQAALETGWGKSIIRQQDGGSSHNLFG 292
Query: 94 LLAEP---GTPSITLNDSSTGKKQEKQ---FTHYKSWKYSMYDYLAHIKSGATGKKDSYT 147
+ G + L G K K+ F Y S++ S +DY++ ++ G
Sbjct: 293 IKTGSRWDGASARALTTEYEGGKAVKEVAAFRSYSSFEQSFHDYVSFLQ----GNDRYQN 348
Query: 148 IMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
+ S NP+ +Q+LQ +G+ D +YA+K+ +I
Sbjct: 349 ALDSAANPERFMQELQRAGYATDPQYARKVAQI 381
>gi|15596282|ref|NP_249776.1| flagellar protein FlgJ [Pseudomonas
aeruginosa PA01]
gi|15214022|sp|Q9I4P4|FLGJ_PSEAE Peptidoglycan hydrolase flgJ
(Muramidase flgJ)
gi|11348550|pir||C83511 flagellar protein FlgJ PA1085 [imported] -
Pseudomonas aeruginosa (strain PAO1)
gi|9947001|gb|AAG04474.1|AE004539_16 flagellar protein FlgJ
[Pseudomonas aeruginosa PAO1]
Length = 400
Score = 70.5 bits (171), Expect = 1e-11
Identities = 44/153 (28%), Positives = 81/153 (52%), Gaps = 14/153 (9%)
Query: 38 QSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK----YHNLFG 93
+S+ + +EFI ++P AQ + G+ +++AQAAL++ +G+ I+ + HNLFG
Sbjct: 233 KSMFASADEFIATMLPMAQKAAERIGVDARYLVAQAALETGWGKSIIRQQDGGSSHNLFG 292
Query: 94 LLAEP---GTPSITLNDSSTGKKQEKQ---FTHYKSWKYSMYDYLAHIKSGATGKKDSYT 147
+ G + L G K K+ F Y S++ S +DY++ ++ G
Sbjct: 293 IKTGSRWDGASARALTTEYEGGKAVKEIAAFRSYSSFEQSFHDYVSFLQ----GNDRYQN 348
Query: 148 IMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
+ S NP+ +Q+LQ +G+ D +YA+K+ +I
Sbjct: 349 ALDSAANPERFMQELQRAGYATDPQYARKVAQI 381
>gi|16803256|ref|NP_464741.1| similar to N-acetylmuramoyl-L-alanine
amidase (autolysin) [Listeria monocytogenes EGD-e]
gi|25517156|pir||AH1226 N-acetylmuramoyl-L-alanine amidase
(autolysin) homolog lmo1216 [imported] - Listeria
monocytogenes (strain EGD-e)
gi|16410632|emb|CAC99294.1| lmo1216 [Listeria monocytogenes]
Length = 328
Score = 70.1 bits (170), Expect = 2e-11
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 4/161 (2%)
Query: 34 ANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFG 93
A +T +E+FI +I P AQ + K +GI S I+QA L+S++GE LA +NLFG
Sbjct: 21 AGLEDGLTSKQEKFINEIAPHAQKVQKEHGILASITISQAILESNWGESKLAKDGNNLFG 80
Query: 94 LLAEPGTPSITL----NDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIM 149
+ SI L ++ + F Y W SM D+ G + Y +
Sbjct: 81 IKGSYQGASIKLPTKEHNGVVWVGTDAVFRAYPGWYESMNDHALLFVKGPSWNPHLYGGL 140
Query: 150 VSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
+ + + L +G+ +D +YA K+ E+I +L +YD
Sbjct: 141 IKEYDFEKAAIALGKTGYSSDPEYAAKLIELIKKANLNKYD 181
>gi|16801799|ref|NP_472067.1| surface protein (GW repeat) similar to
N-acetylmuramidase [Listeria innocua]
gi|25515303|pir||AD1774 surface protein (GW repeat)
N-acetylmuramidase homolog lin2738 [imported] - Listeria
innocua (strain Clip11262)
gi|16415274|emb|CAC97964.1| surface protein (GW repeat) similar to
N-acetylmuramidase [Listeria innocua]
Length = 508
Score = 70.1 bits (170), Expect = 2e-11
Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 8/164 (4%)
Query: 30 GKVDANSR---QSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILAN 86
G NSR S+T +++ FI +I+P A+D + + S +AQA L+S++G+ L+
Sbjct: 25 GAETGNSRVAQNSLTSSQQAFIDEILPAAEDGYRDGKLLTSVTLAQAILESNWGKSGLSK 84
Query: 87 KYHNLFGLLAEPGTPSITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSY 146
+NLFG+ + SI++ F Y SWK S+ D+ I A Y
Sbjct: 85 NSNNLFGIKGQYEGKSISMGTMEASGATTADFRVYPSWKESIEDHTNLITQNA-----RY 139
Query: 147 TIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
V + + +Q ++D G+ Y K+ II+ Y+L +YD
Sbjct: 140 QGAVGETDYRKALQAIKDGGYATAPDYVSKLVAIIERYNLDQYD 183
>gi|29374894|ref|NP_814047.1| N-acetylmuramoyl-L-alanine amidase,
family 4 [Enterococcus faecalis V583]
gi|29342352|gb|AAO80118.1| N-acetylmuramoyl-L-alanine amidase,
family 4 [Enterococcus faecalis V583]
Length = 503
Score = 69.7 bits (169), Expect = 3e-11
Identities = 64/182 (35%), Positives = 91/182 (49%), Gaps = 12/182 (6%)
Query: 21 ILFPLLNHK-GKVDANSRQSVTYTK--EEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDS 77
I+ P+ N G V+ + +V+ TK EEFIQ+I A+ + K + S +IAQA L+S
Sbjct: 184 IVPPVTNETVGLVEDDETFTVSKTKKTEEFIQEIGESARKVAKDKNLYASVMIAQAILES 243
Query: 78 DFGEKILANK-YHNLFGLLAEPGTPS---ITLNDSSTGK--KQEKQFTHYKSWKYSMYDY 131
G L+ K +NLFG+ + S IT D+ G E +F Y ++K SM DY
Sbjct: 244 GSGNSKLSQKPNYNLFGIKGDYKGQSVSFITYEDNGFGNLYTVEAKFRQYPTYKESMEDY 303
Query: 132 LAHIKSGATGKKDSY--TIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRY 189
+K+G KD Y K+ K + L + DK Y KK+ +I YDLT Y
Sbjct: 304 AKLLKNGLDSNKDFYHGVWKTEAKSYKEATRFLTGK-YATDKDYHKKLNALIKTYDLTYY 362
Query: 190 DK 191
DK
Sbjct: 363 DK 364
>gi|23059993|ref|ZP_00084921.1| hypothetical protein [Pseudomonas
fluorescens PfO-1]
Length = 251
Score = 68.9 bits (167), Expect = 4e-11
Identities = 39/146 (26%), Positives = 79/146 (53%), Gaps = 14/146 (9%)
Query: 45 EEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKIL----ANKYHNLFGLLAEPG- 99
++F+ ++P AQ+ G+ P +++AQAAL++ +G+ ++ + HNLFG+ A
Sbjct: 90 DQFVNTMLPMAQEAAARIGVDPRYLVAQAALETGWGKSVMRAQDGSSSHNLFGIKASSNW 149
Query: 100 ---TPSITLNDSSTGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKN 154
+ ++ G+ K+ +F Y S+K S +D + ++S + ++ S N
Sbjct: 150 KGDSARAITSEFRNGQMVKETAEFRSYASYKDSFHDLVTLLQSNNRYQD----VLKSADN 205
Query: 155 PKTLVQKLQDSGFDNDKKYAKKMTEI 180
P+ V++LQ +G+ D YA K+++I
Sbjct: 206 PEQFVRELQKAGYATDPNYATKISQI 231
>gi|23037200|ref|ZP_00069412.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 291
Score = 67.4 bits (163), Expect = 1e-10
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
Query: 47 FIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLN 106
FI+K V AQ+L K Y + S +AQ L+SD+G LA+KY+N +G+ A+ SI L
Sbjct: 143 FIKKRVKYAQELQKKYKVLASIDLAQTILESDWGTSTLASKYNNYYGIKAQGSQKSIQLE 202
Query: 107 DSS--TGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKL 162
GK ++ +F Y +W SM + I +G + +++ + + L
Sbjct: 203 TKEYVNGKWVTEKDKFAVYSNWHDSMLAHAKFIANGTETNSTQFKDVLAAGDYSAAAKAL 262
Query: 163 QDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
G+ D YA K+ +I Y L +YD
Sbjct: 263 VKDGYATDPDYANKLITLIKTYKLNQYD 290
>gi|22855012|ref|NP_690772.1| ORF39 [Bacteriophage phi-105]
gi|7515268|pir||T13528 hypothetical protein 39 - Bacillus phage
phi-105
gi|4126625|dbj|BAA36645.1| ORF39 [bacteriophage phi-105]
Length = 310
Score = 64.3 bits (155), Expect = 1e-09
Identities = 45/146 (30%), Positives = 72/146 (48%), Gaps = 2/146 (1%)
Query: 46 EFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITL 105
+FI+ +VP AQ + K Y + S +IAQ L+S FG L+ + +NLFG+ + +
Sbjct: 5 DFIKSLVPGAQKVRKKYNVLASLVIAQGCLESGFGTSGLSKQAYNLFGIKGTYNGKYVLM 64
Query: 106 NDSSTGKKQEKQFTHYKSWKYSMY-DYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQD 164
S K + K KY Y + LA + S + D Y +V + K + +Q
Sbjct: 65 WTSEQDKYGNVERVQAKFRKYPSYAESLADLGS-LYNRLDRYKAVVGETDYKKACRAVQK 123
Query: 165 SGFDNDKKYAKKMTEIIDLYDLTRYD 190
+G+ D YA K+ +I+ Y L +YD
Sbjct: 124 AGYATDINYANKLITMIEQYKLMQYD 149
>gi|24374752|ref|NP_718795.1| flagellar protein FlgJ [Shewanella
oneidensis MR-1]
gi|24349416|gb|AAN56239.1|AE015761_9 flagellar protein FlgJ
[Shewanella oneidensis MR-1]
Length = 384
Score = 63.9 bits (154), Expect = 1e-09
Identities = 40/149 (26%), Positives = 78/149 (51%), Gaps = 14/149 (9%)
Query: 43 TKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKIL----ANKYHNLFGLLAEP 98
++EEF+ + P A+ K+ G +P ++AQ+AL++ +G+KI+ HNLF + A+
Sbjct: 224 SREEFLATLYPHAEKAAKALGTKPEVLLAQSALETGWGQKIVRGHNGAPSHNLFNIKADR 283
Query: 99 GTPSITLNDSS------TGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSV 152
N S+ +Q+ F Y + +S D+++ I G +D+ + S
Sbjct: 284 RWQGDKANVSTLEFEQGIAVRQKADFRVYNDFDHSFNDFVSFIADGER-YQDAKKVAAS- 341
Query: 153 KNPKTLVQKLQDSGFDNDKKYAKKMTEII 181
P ++ LQ++G+ D KYA+K+ +++
Sbjct: 342 --PTQFIRALQEAGYATDPKYAEKVIKVM 368
>gi|29376366|ref|NP_815520.1| N-acetylmuramoyl-L-alanine amidase,
family 4 [Enterococcus faecalis V583]
gi|29343829|gb|AAO81590.1| N-acetylmuramoyl-L-alanine amidase,
family 4 [Enterococcus faecalis V583]
Length = 652
Score = 63.5 bits (153), Expect = 2e-09
Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 14/191 (7%)
Query: 11 IVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEE----FIQKIVPDAQDLGKSYGIRP 66
+VVT F FI L + +V A S K E FI+KI A++LG+ Y +
Sbjct: 314 LVVTNPFKEFI---LTEYGKEVLATYGASFEMQKSEQTTAFIKKIGETARELGEKYDVFA 370
Query: 67 SFIIAQAALDSDFGEKILANK-YHNLFGLLAEPGTPSITLNDSSTGKKQE-----KQFTH 120
S +IAQA L+S GE LA + Y+NLFG+ S++ + ++ + F
Sbjct: 371 SVMIAQAILESGSGESQLAKEPYYNLFGVKGSFQGNSVSFSTKEADQRGQLYTISAGFRD 430
Query: 121 YKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTL-VQKLQDSGFDNDKKYAKKMTE 179
Y + S+ DY+ ++ G G +D Y + L + + DK+Y K+
Sbjct: 431 YGGYNDSLQDYVQLLRQGIDGNQDFYKPAWRSEAKNYLQATRFLTGKYATDKQYDNKLNS 490
Query: 180 IIDLYDLTRYD 190
+I +Y+LT++D
Sbjct: 491 LIAVYNLTQFD 501
>gi|27469149|ref|NP_765786.1| autolysin precursor [Staphylococcus
epidermidis ATCC 12228]
gi|27316698|gb|AAO05873.1|AE016751_168 autolysin precursor
[Staphylococcus epidermidis ATCC 12228]
Length = 655
Score = 63.5 bits (153), Expect = 2e-09
Identities = 58/154 (37%), Positives = 73/154 (46%), Gaps = 9/154 (5%)
Query: 46 EFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLAEPGTPSIT 104
+FIQ I DA +GK I S +IAQA L+SD G+ LA HNLFG+ + S+T
Sbjct: 358 DFIQSIAKDAHQIGKDQDIYASVMIAQAILESDSGKSSLAQSPNHNLFGIKGDYKGQSVT 417
Query: 105 LN----DSSTGK-KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSY--TIMVSVKNPKT 157
N DSS + F Y S K S+ DY IK G G Y T + K
Sbjct: 418 FNTLEADSSNHMFSIQAGFRKYPSTKQSLEDYADLIKHGIDGNPSIYKPTWKSEALSYKD 477
Query: 158 LVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
L S + D Y+KK+ II Y LT +DK
Sbjct: 478 ATSHLSRS-YATDPNYSKKLNSIIKHYHLTSFDK 510
>gi|23026588|ref|ZP_00065061.1| hypothetical protein [Microbulbifer
degradans 2-40]
Length = 318
Score = 62.0 bits (149), Expect = 5e-09
Identities = 42/166 (25%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 27 NHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILAN 86
N R ++ + ++FIQ+++P+ + G+ P +IAQAAL++ +GEK++A+
Sbjct: 140 NMSAAAPKGERSAMATSPDDFIQQMLPNVTKAAEKLGVEPEVLIAQAALETGWGEKVIAD 199
Query: 87 K----YHNLFGLLAEPGTPSITLN----DSSTGK--KQEKQFTHYKSWKYSMYDYLAHIK 136
K +NLF + A G + + + GK K++ F Y S + S+ DY++ I+
Sbjct: 200 KNGQPSNNLFNIKAHNGWQGNAVTAETLEFANGKFEKEKAAFRQYGSIEESVNDYVSFIQ 259
Query: 137 SGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIID 182
G I K + ++ + +G+ D YA K+ +++
Sbjct: 260 ----GNPRYQDIATGNKTAEEYIKGITQAGYATDPAYANKVLSVLE 301
>gi|23471961|ref|ZP_00127289.1| hypothetical protein [Pseudomonas
syringae pv. syringae B728a]
Length = 414
Score = 61.6 bits (148), Expect = 6e-09
Identities = 38/146 (26%), Positives = 79/146 (54%), Gaps = 14/146 (9%)
Query: 45 EEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKIL----ANKYHNLFGLLA---- 96
++F++ ++P A++ G+ P ++AQAAL++ +G+ I+ + HNLFG+ A
Sbjct: 253 DQFVETMLPLAKEAAARIGVDPVMLVAQAALETGWGKSIMRQQDGSSSHNLFGIKAAGSW 312
Query: 97 EPGTPSITLNDSSTGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKN 154
+ ++ GK K+ F Y S+ S +D ++ +++ + K+ ++ S
Sbjct: 313 KGAEARAITSEFRDGKMVKETADFRSYDSYADSFHDLVSLLQNNSRYKE----VVNSADK 368
Query: 155 PKTLVQKLQDSGFDNDKKYAKKMTEI 180
P+ V++LQ +G+ D YA K+++I
Sbjct: 369 PEQFVKELQKAGYATDPDYASKISQI 394
>gi|26991071|ref|NP_746496.1| peptidoglycan hydrolase FlgJ
[Pseudomonas putida KT2440]
gi|24986105|gb|AAN69960.1|AE016634_9 peptidoglycan hydrolase FlgJ
[Pseudomonas putida KT2440]
Length = 384
Score = 60.8 bits (146), Expect = 1e-08
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 18/148 (12%)
Query: 45 EEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILAN----KYHNLFGLLA---- 96
+ F+ ++P A+ + G+ P +++AQAAL++ +G+ ++ N HNLFG+ A
Sbjct: 224 DAFVATMLPMAEQAARRIGVDPRYLVAQAALETGWGKSVMRNSDGSSSHNLFGIKATGNW 283
Query: 97 EPGTPSITLNDSSTGK--KQEKQFTHYKSWKYSMYDYLAHIKSGA--TGKKDSYTIMVSV 152
+ ++ G+ K+ F Y S++ S +D + ++S A G D +
Sbjct: 284 QGEQARAITSEFRDGQFVKETAAFRSYDSYQDSFHDLVTLLQSNARYQGALD------AA 337
Query: 153 KNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
NP+ ++LQ +G+ D YAKK+ I
Sbjct: 338 DNPEQFARELQKAGYATDPGYAKKIISI 365
>gi|16803116|ref|NP_464601.1| similar to autolysin (EC 3.5.1.28)
(N-acetylmuramoyl-L-alanine amidase) [Listeria
monocytogenes EGD-e]
gi|25518336|pir||AD1209 N-acetylmuramoyl-L-alanine amidase (EC
3.5.1.28) lmo1076 - Listeria monocytogenes (strain
EGD-e)
gi|16410478|emb|CAC99154.1| lmo1076 [Listeria monocytogenes]
Length = 572
Score = 60.5 bits (145), Expect = 2e-08
Identities = 49/155 (31%), Positives = 73/155 (46%), Gaps = 9/155 (5%)
Query: 44 KEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLAEPGTPS 102
++ FI I A DL K Y + PS +IAQAAL+S++G L +NLFG+ S
Sbjct: 90 QQTFINSISTQAMDLCKKYNLYPSVMIAQAALESNWGRSELGKAPNYNLFGIKGSYNGKS 149
Query: 103 ITL-----NDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSY--TIMVSVKNP 155
+T+ +DS + F Y S K S+ D +++G + Y + K
Sbjct: 150 VTMKTWEYSDSKGWYQINANFAKYPSHKESLEDNAKKLRNGPSWDSSYYKGAWRENAKTY 209
Query: 156 KTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
K LQ + D YA K+ +I Y+LT+YD
Sbjct: 210 KDATAWLQGR-YATDNTYASKLNTLISSYNLTQYD 243
>gi|28869147|ref|NP_791766.1| peptidoglycan hydrolase FlgJ
[Pseudomonas syringae pv. tomato str. DC3000]
gi|28852387|gb|AAO55461.1| peptidoglycan hydrolase FlgJ
[Pseudomonas syringae pv. tomato str. DC3000]
Length = 416
Score = 59.7 bits (143), Expect = 2e-08
Identities = 38/146 (26%), Positives = 77/146 (52%), Gaps = 14/146 (9%)
Query: 45 EEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKIL----ANKYHNLFGLLA---- 96
++F++ ++P A++ G+ P ++AQAAL++ +G+ I+ + HNLFG+ A
Sbjct: 255 DQFVETMLPLAKEAAARIGVDPVMLVAQAALETGWGKSIMRQQDGSSSHNLFGIKAAGSW 314
Query: 97 EPGTPSITLNDSSTGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKN 154
+ ++ GK K+ F Y S+ S +D ++ +++ K ++ S
Sbjct: 315 KGAEARAITSEFRDGKMVKETADFRSYDSYADSFHDLVSLLQNNNRYKD----VVNSADK 370
Query: 155 PKTLVQKLQDSGFDNDKKYAKKMTEI 180
P+ V++LQ +G+ D YA K+++I
Sbjct: 371 PEQFVKELQKAGYATDPAYASKISQI 396
>gi|23037173|ref|ZP_00069385.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 324
Score = 57.4 bits (137), Expect = 1e-07
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 31 KVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHN 90
K++A + + + F+ +I+ A + Y I PS AQA L+S +G LA++YHN
Sbjct: 25 KIEAENTANYSSKVSTFLNEIIESAINGWTQYKILPSLTAAQAILESGWGTSTLASEYHN 84
Query: 91 LFGLLAEPGTPSITL--NDSSTGKKQE--KQFTHYKSWKYSMYDYLAHIKSGATGKKDSY 146
LFG+ ++ + + +G E F Y S S+ +Y + + Y
Sbjct: 85 LFGIKGSYNGQTVDMPTEEYYSGAYHEIDDYFRVYASDSESITNYEELLSENS-----RY 139
Query: 147 TIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
+ ++ + T +++ + G+ D Y +++ EII+ Y+LT +D
Sbjct: 140 SNLIGETDAATAAEEIYEDGYATDPDYTEELEEIINEYNLTAWD 183
>gi|21284294|ref|NP_647382.1| ORFID:MW2565~hypothetical protein,
similar to autolysin precursor [Staphylococcus aureus
subsp. aureus MW2]
gi|21205738|dbj|BAB96430.1| MW2565 [Staphylococcus aureus subsp.
aureus MW2]
Length = 619
Score = 57.4 bits (137), Expect = 1e-07
Identities = 51/152 (33%), Positives = 70/152 (45%), Gaps = 8/152 (5%)
Query: 46 EFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLAEPGTPSIT 104
+F++ I DA +G+ I S +IAQA L+SD G LA HNLFG+ S+
Sbjct: 322 QFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEGNSVP 381
Query: 105 LN----DSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSY--TIMVSVKNPKTL 158
N D + F Y S K S+ DY IK+G G + Y T + K
Sbjct: 382 FNTLEADGNKLYSINAGFRKYPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDA 441
Query: 159 VQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
L + + D YAKK+ II Y LT++D
Sbjct: 442 TSHLSKT-YATDPNYAKKLNSIIKHYQLTQFD 472
>gi|15925634|ref|NP_373168.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
gi|15928230|ref|NP_375763.1| hypothetical protein, similar to
autolysin precursor [Staphylococcus aureus subsp. aureus
N315]
gi|25506904|pir||D90072 hypothetical protein SA2437 [imported] -
Staphylococcus aureus (strain N315)
gi|13702602|dbj|BAB43742.1| SA2437 [Staphylococcus aureus subsp.
aureus N315]
gi|14248419|dbj|BAB58806.1| hypothetical protein [Staphylococcus
aureus subsp. aureus Mu50]
Length = 619
Score = 57.4 bits (137), Expect = 1e-07
Identities = 51/152 (33%), Positives = 70/152 (45%), Gaps = 8/152 (5%)
Query: 46 EFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLAEPGTPSIT 104
+F++ I DA +G+ I S +IAQA L+SD G LA HNLFG+ S+
Sbjct: 322 QFVKSIAKDAHRIGQDNDIYASVMIAQAILESDSGRSALAKSPNHNLFGIKGAFEGNSVP 381
Query: 105 LN----DSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSY--TIMVSVKNPKTL 158
N D + F Y S K S+ DY IK+G G + Y T + K
Sbjct: 382 FNTLEADGNKLYSINAGFRKYPSTKESLKDYSDLIKNGIDGNRTIYKPTWKSEADSYKDA 441
Query: 159 VQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
L + + D YAKK+ II Y LT++D
Sbjct: 442 TSHLSKT-YATDPNYAKKLNSIIKHYQLTQFD 472
>gi|30248327|ref|NP_840397.1| Mannosyl-glycoprotein
endo-beta-N-acetylglucosamidases [Nitrosomonas europaea
ATCC 19718]
gi|30138213|emb|CAD84221.1| Mannosyl-glycoprotein
endo-beta-N-acetylglucosamidases [Nitrosomonas europaea
ATCC 19718]
Length = 337
Score = 56.6 bits (135), Expect = 2e-07
Identities = 41/157 (26%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 36 SRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYH----NL 91
S +SV EF++ ++P A+ + + GI F+IAQAAL++ +G + + NL
Sbjct: 180 SAESVAAHPREFVRDVLPHARKVARETGIPEHFMIAQAALETGWGRHQIRRADNQPSFNL 239
Query: 92 FGLLA----EPGTPSITLNDSSTGKKQE--KQFTHYKSWKYSMYDYLAHIKSGATGKKDS 145
FG+ A G + GK Q+ ++F Y S++ + DY +++
Sbjct: 240 FGIKASGNWRGGVVETVTTEYVDGKPQKLREKFRTYDSYEDAFRDYAKLLQNNP-----R 294
Query: 146 YTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIID 182
Y ++ ++ LQ +G+ D YA+K+ +II+
Sbjct: 295 YAAVLKSRSATAFAWGLQQAGYATDPSYAEKLLKIIN 331
>gi|27363700|ref|NP_759228.1| Muramidase [Vibrio vulnificus CMCP6]
gi|27359816|gb|AAO08755.1|AE016797_210 Muramidase [Vibrio
vulnificus CMCP6]
Length = 306
Score = 56.6 bits (135), Expect = 2e-07
Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 15/146 (10%)
Query: 45 EEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILAN---KYHNLFGLLAEPG-- 99
E FI + P A+ + KS G+ PS ++AQAAL++ +G+K++ N +NLF + A+
Sbjct: 159 ESFITSMRPYAERVAKSLGVEPSLLLAQAALETGWGQKVVKNARGSSNNLFNIKADRSWA 218
Query: 100 -----TPSITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKN 154
T ++ +D +T K+ F Y S+ S DY+A + + + T + +
Sbjct: 219 GDKVTTQTLEFHD-NTPVKETAAFRSYDSFADSFNDYVAFLNNNPRYQ----TALQHNGD 273
Query: 155 PKTLVQKLQDSGFDNDKKYAKKMTEI 180
++ ++ + +G+ D +YA K+ ++
Sbjct: 274 SESFIRGIHRAGYATDPEYADKVLKV 299
>gi|29377113|ref|NP_816267.1| N-acetylmuramoyl-L-alanine amidase,
family 4 [Enterococcus faecalis V583]
gi|29344579|gb|AAO82337.1| N-acetylmuramoyl-L-alanine amidase,
family 4 [Enterococcus faecalis V583]
Length = 515
Score = 56.2 bits (134), Expect = 3e-07
Identities = 50/168 (29%), Positives = 76/168 (44%), Gaps = 7/168 (4%)
Query: 31 KVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YH 89
+ +AN + EFI+KI +A+ +G+ + + S +IAQA L+S G LA +
Sbjct: 176 QAEANFVVQENASTSEFIRKIGEEARVIGQRHDLYASVMIAQAILESGSGNSALAAAPNY 235
Query: 90 NLFGLLAEPGTPSI---TLNDSSTGKKQ--EKQFTHYKSWKYSMYDYLAHIKSGATGKKD 144
NLFG+ S+ T D GK F Y S+K S+ DY I +G G
Sbjct: 236 NLFGIKGAYHGQSVSFPTQEDDGKGKMTTIHADFRQYPSYKESLTDYSKLIINGLAGNPT 295
Query: 145 SY-TIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
Y ++ + K + D Y KK+ +I+ Y LT YD+
Sbjct: 296 FYHGVLKANTTNYQQATKFLTGRYATDTYYDKKLNALIETYQLTEYDQ 343
>gi|28210191|ref|NP_781135.1| conserved phage protein [Clostridium
tetani E88]
gi|28202627|gb|AAO35072.1| conserved phage protein [Clostridium
tetani E88]
Length = 314
Score = 55.8 bits (133), Expect = 3e-07
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 18/163 (11%)
Query: 40 VTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPG 99
V+ KE FI + P+A+ + K Y I PS +I QA L+SD+G+ L++ Y+NLFG+ A
Sbjct: 140 VSEEKEIFINALTPEAKSIYKEYDILPSIVIGQAILESDWGKSKLSSNYNNLFGIKATKS 199
Query: 100 TPSITLNDSSTGKKQEK---QFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPK 156
T+ ++ + F Y S S+ DY +K +++ V N K
Sbjct: 200 WKGKTVKMETSENYDDTIIDVFRSYDSKGNSLKDYAKFLKDNRRYREN------GVFNSK 253
Query: 157 TLVQK---LQDSGF------DNDKKYAKKMTEIIDLYDLTRYD 190
T +++ + +G+ D + Y +TEII Y+L D
Sbjct: 254 TYIEQADSITKAGYSTKKDKDGNHMYGNLLTEIIREYNLQLID 296
>gi|15672254|ref|NP_266428.1| N-acetylmuramidase [Lactococcus lactis
subsp. lactis]
gi|15213923|sp|Q9CIT4|ACMA_LACLA Probable N-acetylmuramidase
precursor (Peptidoglycan hydrolase) (Autolysin)
(Lysosyme)
gi|25402425|pir||H86658 N-acetylmuramoyl-L-alanine amidase (EC
3.5.1.28) [imported] - Lactococcus lactis subsp. lactis
(strain IL1403)
gi|12723133|gb|AAK04370.1|AE006264_9 N-acetylmuramidase (EC
3.5.1.28) [Lactococcus lactis subsp. lactis]
Length = 439
Score = 55.1 bits (131), Expect = 6e-07
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 6/159 (3%)
Query: 38 QSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLA 96
Q+ T + E FI+ I A+ + S G+ PS +IAQA L+S++G L+ Y+NLFG+
Sbjct: 56 QAATNSTEAFIESIAASAKPVADSNGLYPSVMIAQAILESNWGSSQLSRAPYYNLFGIQG 115
Query: 97 EPGTPSITLNDSS--TGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSV 152
S+ GK ++ F Y S+ S D +K+ G Y
Sbjct: 116 TYQGKSVVFKTQEYLNGKWVTKDMPFRVYPSFNQSFQDNAYVLKTTNFGNGPYYAKAWRA 175
Query: 153 KNPKTLVQKLQDSG-FDNDKKYAKKMTEIIDLYDLTRYD 190
+G + D Y + II Y+LTR+D
Sbjct: 176 NAATYQAATAALTGKYATDPNYGASLNRIISQYNLTRFD 214
>gi|26247221|ref|NP_753261.1| Peptidoglycan hydrolase flgJ
[Escherichia coli CFT073]
gi|26107622|gb|AAN79821.1|AE016759_95 Peptidoglycan hydrolase flgJ
[Escherichia coli CFT073]
Length = 323
Score = 54.7 bits (130), Expect = 9e-07
Identities = 43/160 (26%), Positives = 78/160 (47%), Gaps = 15/160 (9%)
Query: 32 VDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK---- 87
V N S+ + F+ ++ AQ + G+ I+AQAAL+S +G++ + +
Sbjct: 147 VPRNYDDSLPGNSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEP 206
Query: 88 YHNLFGLLAE-----PGTP-SITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATG 141
+NLFG+ A P T + T ++ KK + +F Y S+ ++ DY+ G
Sbjct: 207 SYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYV-----GLLT 261
Query: 142 KKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEII 181
+ Y + + + + Q LQD+G+ D YA+K+T +I
Sbjct: 262 RNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMI 301
>gi|16129044|ref|NP_415599.1| FlgJ [Escherichia coli K12]
gi|2494543|sp|P75942|FLGJ_ECOLI Peptidoglycan hydrolase flgJ
(Muramidase flgJ)
gi|7465859|pir||F64851 flagellar protein flgJ - Escherichia coli
(strain K-12)
gi|1787321|gb|AAC74165.1| flagellar biosynthesis [Escherichia coli
K12]
gi|4062659|dbj|BAA35890.1| Flagellar basal body protein flgJ
[Escherichia coli K12]
Length = 313
Score = 53.9 bits (128), Expect = 1e-06
Identities = 43/160 (26%), Positives = 78/160 (47%), Gaps = 15/160 (9%)
Query: 32 VDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK---- 87
V N S+ + F+ ++ AQ + G+ I+AQAAL+S +G++ + +
Sbjct: 137 VPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEP 196
Query: 88 YHNLFGLLAE-----PGTP-SITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATG 141
+NLFG+ A P T + T ++ KK + +F Y S+ ++ DY+ G
Sbjct: 197 SYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYV-----GLLT 251
Query: 142 KKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEII 181
+ Y + + + + Q LQD+G+ D YA+K+T +I
Sbjct: 252 RNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMI 291
>gi|15801198|ref|NP_287215.1| flagellar biosynthesis [Escherichia
coli O157:H7 EDL933]
gi|15830713|ref|NP_309486.1| flagellar basal body protein FlgJ
[Escherichia coli O157:H7]
gi|15214011|sp|P58231|FLGJ_ECO57 Peptidoglycan hydrolase flgJ
(Muramidase flgJ)
gi|25356669|pir||C90811 flagellar basal body protein FlgJ
[imported] - Escherichia coli (strain O157:H7, substrain
RIMD 0509952)
gi|25356671|pir||G85670 flagellar biosynthesis [imported] -
Escherichia coli (strain O157:H7, substrain EDL933)
gi|12514622|gb|AAG55827.1|AE005318_4 flagellar biosynthesis
[Escherichia coli O157:H7 EDL933]
gi|13360923|dbj|BAB34882.1| flagellar basal body protein FlgJ
[Escherichia coli O157:H7]
Length = 313
Score = 53.9 bits (128), Expect = 1e-06
Identities = 43/160 (26%), Positives = 78/160 (47%), Gaps = 15/160 (9%)
Query: 32 VDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK---- 87
V N S+ + F+ ++ AQ + G+ I+AQAAL+S +G++ + +
Sbjct: 137 VPRNYDDSLPGDSKAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEP 196
Query: 88 YHNLFGLLAE-----PGTP-SITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATG 141
+NLFG+ A P T + T ++ KK + +F Y S+ ++ DY+ G
Sbjct: 197 SYNLFGVKASGNWKGPVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYV-----GLLT 251
Query: 142 KKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEII 181
+ Y + + + + Q LQD+G+ D YA+K+T +I
Sbjct: 252 RNPRYAAVTTAASAEQGAQALQDAGYATDPHYARKLTNMI 291
>gi|24112489|ref|NP_706999.1| flagellar biosynthesis [Shigella
flexneri 2a str. 301]
gi|24051375|gb|AAN42706.1|AE015135_10 flagellar biosynthesis
[Shigella flexneri 2a str. 301]
Length = 323
Score = 52.8 bits (125), Expect = 3e-06
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 32 VDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK---- 87
V N S+ F+ ++ AQ + G+ I+AQAAL+S +G++ + +
Sbjct: 147 VPRNYDDSLPGDSRAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEP 206
Query: 88 YHNLFGLLAEPG----TPSITLNDSSTG--KKQEKQFTHYKSWKYSMYDYLAHIKSGATG 141
+NLFG+ A IT + G KK + +F Y S+ ++ DY+ G
Sbjct: 207 SYNLFGVKASGNWKGQVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYV-----GLLT 261
Query: 142 KKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEII 181
+ Y + + + + Q LQD+G+ D YA+K+T +I
Sbjct: 262 RNPRYAAVTTAASAEQGAQVLQDAGYATDPHYARKLTNMI 301
>gi|2707292|gb|AAB93629.1| N-acetylmuramidase [Lactococcus lactis]
Length = 437
Score = 52.8 bits (125), Expect = 3e-06
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 38 QSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLA 96
Q+ T + E FI+ I A+ + + G+ PS +IAQA L+S++G L+ Y+NLFG+
Sbjct: 56 QAATNSSEAFIESIAASAKPVADANGLYPSVMIAQAILESNWGSSQLSRAPYYNLFGIQG 115
Query: 97 EPGTPSITLNDSS--TGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSV 152
S+ GK ++ F Y S+ S D +K+ G Y
Sbjct: 116 TYQGKSVVFKTQEYLNGKWVTKDMPFRVYPSFNQSFQDNTYVLKTTNFGNGPYYA----- 170
Query: 153 KNPKTLVQKLQDS------GFDNDKKYAKKMTEIIDLYDLTRYD 190
K + QD+ + D Y + II Y+LTR+D
Sbjct: 171 KAWRANAATYQDATAALTGKYATDPSYGASLNRIISQYNLTRFD 214
>gi|30062617|ref|NP_836788.1| flagellar basal body protein FlgJ
[Shigella flexneri 2a str. 2457T]
gi|30040863|gb|AAP16594.1| flagellar basal body protein FlgJ
[Shigella flexneri 2a str. 2457T]
Length = 313
Score = 52.8 bits (125), Expect = 3e-06
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 15/160 (9%)
Query: 32 VDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK---- 87
V N S+ F+ ++ AQ + G+ I+AQAAL+S +G++ + +
Sbjct: 137 VPRNYDDSLPGDSRAFLAQLSLPAQLASQQSGVPHHLILAQAALESGWGQRQIRRENGEP 196
Query: 88 YHNLFGLLAEPG----TPSITLNDSSTG--KKQEKQFTHYKSWKYSMYDYLAHIKSGATG 141
+NLFG+ A IT + G KK + +F Y S+ ++ DY+ G
Sbjct: 197 SYNLFGVKASGNWKGQVTEITTTEYENGEAKKVKAKFRVYSSYLEALSDYV-----GLLT 251
Query: 142 KKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEII 181
+ Y + + + + Q LQD+G+ D YA+K+T +I
Sbjct: 252 RNPRYAAVTTAASAEQGAQVLQDAGYATDPHYARKLTNMI 291
>gi|28897558|ref|NP_797163.1| peptidoglycan hydrolase FlgJ [Vibrio
parahaemolyticus RIMD 2210633]
gi|15214032|sp|Q9X9J3|FLGJ_VIBPA Peptidoglycan hydrolase flgJ
(Muramidase flgJ)
gi|5361013|gb|AAD42920.1|U12817_14 polar FlgJ flagellar homolog
[Vibrio parahaemolyticus]
gi|28805770|dbj|BAC59047.1| peptidoglycan hydrolase FlgJ [Vibrio
parahaemolyticus]
Length = 308
Score = 52.4 bits (124), Expect = 4e-06
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 19/159 (11%)
Query: 36 SRQSVTYTK----EEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILAN---KY 88
SR S T K E F+ + P A+ K+ G+ PS ++AQAAL++ +G+K++ N
Sbjct: 148 SRTSHTPAKFDSPESFVNSMKPYAEKAAKALGVEPSLLLAQAALETGWGQKVVQNARGSS 207
Query: 89 HNLFGLLAEPG-------TPSITLNDSSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATG 141
+NLF + A+ T ++ +D +T K+ F Y +++ S DY+ +
Sbjct: 208 NNLFNIKADRSWQGDKVTTQTLEFHD-NTPVKETAAFRSYSNYQDSFNDYVRFLNDNPRY 266
Query: 142 KKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
+ T + + ++ ++ + +G+ D YA K+ ++
Sbjct: 267 E----TALQQRGDSESFIRGIHRAGYATDPTYADKVLQV 301
>gi|15213921|sp|Q48603|ACMA_LACLC Probable N-acetylmuramidase
precursor (Peptidoglycan hydrolase) (Autolysin)
(Lysosyme)
gi|755216|gb|AAC33367.1| N-acetylmuramidase [Lactococcus lactis]
Length = 437
Score = 52.4 bits (124), Expect = 4e-06
Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 38 QSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLA 96
Q+ T + E FI+ I A+ + + G+ PS +IAQA L+S++G L+ Y+NLFG+
Sbjct: 56 QAATNSSEVFIESIAASAKPVADANGLYPSVMIAQAILESNWGSSQLSRAPYYNLFGIQG 115
Query: 97 EPGTPSITLNDSS--TGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSV 152
S+ GK ++ F Y S+ S D +K+ G Y
Sbjct: 116 TYQGKSVVFKTQEYLNGKWVTKDMPFRVYPSFNQSFQDNAYVLKTTNFGNGPYYA----- 170
Query: 153 KNPKTLVQKLQDSG------FDNDKKYAKKMTEIIDLYDLTRYD 190
K + QD+ + D Y + II Y+LTR+D
Sbjct: 171 KAWRANAATYQDATAALTGRYATDPSYGASLNRIISQYNLTRFD 214
>gi|15673889|ref|NP_268064.1| N-acetylmuramidase [Lactococcus lactis
subsp. lactis]
gi|25401989|pir||C86863 N-acetylmuramoyl-L-alanine amidase (EC
3.5.1.28) [imported] - Lactococcus lactis subsp. lactis
(strain IL1403)
gi|12724943|gb|AAK06005.1|AE006420_5 N-acetylmuramidase (EC
3.5.1.28) [Lactococcus lactis subsp. lactis]
Length = 475
Score = 52.0 bits (123), Expect = 6e-06
Identities = 43/156 (27%), Positives = 67/156 (42%), Gaps = 7/156 (4%)
Query: 41 TYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGT 100
T + E FI+ I + L + S I+AQA L+S G+ ++ +Y N+F +
Sbjct: 168 TSSTEAFIKSIADRVRILAGKNNLYASIILAQAILESGSGQSNMSQQYFNIFNITGAYLG 227
Query: 101 PSITLNDSSTGKKQ----EKQFTHYKSWKYSMYDYLAHIKSGATGKKDSY--TIMVSVKN 154
SI+ E+ F Y ++ ++ DY+ + G T + Y K
Sbjct: 228 KSISFKTEEFSGNNPYYIEQSFRVYSNYDQALDDYINLMIKGTTWNSEIYAGAWKSHAKT 287
Query: 155 PKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
+ Q LQ F D YA+K+ EII Y L YD
Sbjct: 288 YQEAAQALQGI-FATDPAYAQKLIEIIQEYKLDAYD 322
>gi|22796421|emb|CAC93669.1| peptidoglycan hydrolase [Lactococcus
lactis]
Length = 538
Score = 51.6 bits (122), Expect = 6e-06
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 14/166 (8%)
Query: 31 KVDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHN 90
K+D++S E FI+ I + L + S I+AQA L+S G+ + +Y N
Sbjct: 228 KIDSSS-------TEAFIKSIADRVRILAGKNNLYASIILAQAILESGSGQSNMTQQYFN 280
Query: 91 LFGLLAEPGTPSITLNDSSTGKKQ----EKQFTHYKSWKYSMYDYLAHIKSGATGKKDSY 146
+F + SI+ E+ F Y ++ ++ DY+ + G T + Y
Sbjct: 281 IFNITGAYLGKSISFKTEEFSGNNPYYIEQSFRVYSNYDQALDDYINLMIKGTTWNSEIY 340
Query: 147 --TIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
K + Q LQ F D +YA+K+ EII+ Y+L YD
Sbjct: 341 AGAWKSHAKTYQEAAQALQGI-FATDPEYAQKLIEIIEEYNLNFYD 385
>gi|33152063|ref|NP_873416.1| conserved hypothetical protein
[Haemophilus ducreyi 35000HP]
gi|33148285|gb|AAP95805.1| conserved hypothetical protein
[Haemophilus ducreyi 35000HP]
Length = 665
Score = 51.6 bits (122), Expect = 7e-06
Identities = 41/153 (26%), Positives = 73/153 (46%), Gaps = 9/153 (5%)
Query: 32 VDANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNL 91
V+ + Q +K+EFIQ+ +P A+ + + +G+ +IAQAAL+S +G+ + N Y +
Sbjct: 513 VNVPNNQITAKSKKEFIQQAMPIAKAIEEKWGVPAEVVIAQAALESGWGKHVKGNAYFGI 572
Query: 92 FGLLAEPGTPSITLNDSSTGKKQE--KQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIM 149
G ++ G+ + ++ GKK F Y + + Y + K Y
Sbjct: 573 KGKGSQ-GSINFGTHEVINGKKISINDNFASYGGFGDAANGYGEFLN-----KNKRYREA 626
Query: 150 VSVK-NPKTLVQKLQDSGFDNDKKYAKKMTEII 181
K NP + + +G+ D YA K+T+II
Sbjct: 627 FKHKDNPVEFAKAIARAGYATDPDYANKLTKII 659
>gi|31194971|ref|XP_306433.1| ENSANGP00000001769 [Anopheles gambiae]
gi|21290170|gb|EAA02315.1| ENSANGP00000001769 [Anopheles gambiae
str. PEST]
Length = 260
Score = 51.6 bits (122), Expect = 7e-06
Identities = 23/60 (38%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 43 TKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK----YHNLFGLLAEP 98
T EEF+ +++P A+ G+ P+ ++AQAAL+S +G++++ N HNLFG+ A+P
Sbjct: 182 TPEEFVNRLMPLAKKAADKLGLSPAVLVAQAALESGWGKRVIKNGEGQVTHNLFGIKADP 241
>gi|15672523|ref|NP_266697.1| N-acetylmuramidase [Lactococcus lactis
subsp. lactis]
gi|25401091|pir||E86692 N-acetylmuramoyl-L-alanine amidase (EC
3.5.1.28) [imported] - Lactococcus lactis subsp. lactis
(strain IL1403)
gi|12723426|gb|AAK04639.1|AE006288_2 N-acetylmuramidase (EC
3.5.1.28) [Lactococcus lactis subsp. lactis]
Length = 361
Score = 51.2 bits (121), Expect = 9e-06
Identities = 37/146 (25%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 48 IQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGTPSITLND 107
+Q+I+ A + YG+ PS +IAQ L+S G+ LA+ Y+N+FG+ GTP
Sbjct: 29 VQEIINAAVPVANDYGLYPSVMIAQGILESSGGQSALASNYNNIFGVKYTSGTPVYLPTQ 88
Query: 108 SSTGKKQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQ--DS 165
++++ S+YD A + + SY +N + + +
Sbjct: 89 EYLNGTMTNVVEPFQAYS-SVYD--ACVAQAKMLRASSYYSGAWRENTSSYLDATAWLEG 145
Query: 166 GFDNDKKYAKKMTEIIDLYDLTRYDK 191
+ D YA K+ +I L+ YD+
Sbjct: 146 RYATDPTYASKLNSVISELGLSVYDQ 171
>gi|22987093|ref|ZP_00032178.1| hypothetical protein [Burkholderia
fungorum]
Length = 332
Score = 51.2 bits (121), Expect = 1e-05
Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 45 EEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGE----KILANKYHNLFGLLAEPGT 100
+ F+ K+ AQ + GI FII QAAL+S +G+ K + HN+FG+ A
Sbjct: 186 DAFVDKLAGPAQAASAATGIPARFIIGQAALESGWGKSEIRKTDGSTSHNVFGIKATKDW 245
Query: 101 PSITLNDSST----GKKQE--KQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKN 154
T++ +T GK Q ++F Y S++ +M DY + +K G ++ S +
Sbjct: 246 TGKTVSTVTTEYVNGKPQRTVEKFRAYDSYQEAMTDYASLLK----GNPRYAQVINSAHD 301
Query: 155 PKTLVQKLQDSGFDNDKKYAKKMTEII 181
+Q +G+ D YAKK+ I+
Sbjct: 302 VNGFANGMQRAGYATDPHYAKKLMSIM 328
>gi|22538050|ref|NP_688901.1| N-acetylmuramoyl-L-alanine amidase,
family 4 protein [Streptococcus agalactiae 2603V/R]
gi|25011938|ref|NP_736333.1| Unknown [Streptococcus agalactiae
NEM316]
gi|22534954|gb|AAN00774.1|AE014278_1 N-acetylmuramoyl-L-alanine
amidase, family 4 protein [Streptococcus agalactiae
2603V/R]
gi|24413480|emb|CAD47558.1| Unknown [Streptococcus agalactiae
NEM316]
Length = 194
Score = 50.8 bits (120), Expect = 1e-05
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 2 RKRFSLLNFIVVTFIFFFFILFPLLNHKGKVDANSRQSVTYTKEEFIQKIVPDAQDLGKS 61
RK+ L+ + T + F N+K + S + FIQ I P A ++ K+
Sbjct: 4 RKKDKLVLRLTTTLLVFGLGGVWFYNYKNDNVEPTVTSASDQTTTFIQTISPTAIEISKT 63
Query: 62 YGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLAEPGTPSI---TLNDSSTGKKQEKQ 117
Y + S ++AQA L+S G+ L+ +NLFG+ E S+ TL D G + Q
Sbjct: 64 YDLYASVLLAQAILESSSGQSDLSKAPNYNLFGIKGEYKGKSVQMPTLEDDGKGNMTQIQ 123
Query: 118 --FTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAK 175
F Y ++ S+YDY A + S + S K+ + L + D YA
Sbjct: 124 APFRAYPNYSASLYDY-AELVSSQKYASVWKSNTSSYKDATAALTGL----YATDTAYAS 178
Query: 176 KMTEIIDLYDLTRYDK 191
K+ +II+ Y L YDK
Sbjct: 179 KLNQIIETYSLDAYDK 194
>gi|16801898|ref|NP_472166.1| similar to autolysin,
N-acetylmuramidase [Listeria innocua]
gi|25517454|pir||AH1786 autolysin, N-acetylmuramidase homolog
lin2838 [imported] - Listeria innocua (strain Clip11262)
gi|16415373|emb|CAC98064.1| lin2838 [Listeria innocua]
Length = 594
Score = 50.8 bits (120), Expect = 1e-05
Identities = 44/155 (28%), Positives = 70/155 (44%), Gaps = 7/155 (4%)
Query: 43 TKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLAEPGTP 101
T + FI I + + + + S +IAQA L+S +G L + +NLFG+
Sbjct: 152 TIQSFINSIQASSSQIAAANDLYASVMIAQAILESAYGTSELGSAPNYNLFGIKGAYNGQ 211
Query: 102 SI---TLNDSSTGKKQ--EKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYT-IMVSVKNP 155
S TL D G +F Y S+ S+ DY I++G + + Y+ + S N
Sbjct: 212 SYTKQTLEDDGKGNYYTITAKFRKYPSYHQSLEDYAKVIRNGPSWNSNYYSKVWKSNTNS 271
Query: 156 KTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
K + D YA K+ ++I Y+LT+YD
Sbjct: 272 YKDATKALTGTYATDTAYATKLNDLISRYNLTQYD 306
>gi|21242722|ref|NP_642304.1| flagellar protein [Xanthomonas
axonopodis pv. citri str. 306]
gi|21108197|gb|AAM36840.1| flagellar protein [Xanthomonas
axonopodis pv. citri str. 306]
Length = 358
Score = 50.4 bits (119), Expect = 2e-05
Identities = 42/145 (28%), Positives = 70/145 (47%), Gaps = 11/145 (7%)
Query: 43 TKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILAN--KYHNLFGLLAE--P 98
T E F+ KI AQ + G+ P ++AQAAL++ +G + + N +NLFG+ A
Sbjct: 180 TPEGFVAKIWTHAQKAARELGVDPRALVAQAALETGWGRRGIGNGGDSNNLFGIKATGWS 239
Query: 99 GTPSIT-LNDSSTGKK--QEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNP 155
G T ++ G K + F Y S + S DY+ +K+ + + T + + +
Sbjct: 240 GDKVTTGTHEYVNGVKTTETADFRAYGSAEESFADYVRLLKNNSRYQ----TALQAGTDI 295
Query: 156 KTLVQKLQDSGFDNDKKYAKKMTEI 180
K + LQ +G+ D YA K+ I
Sbjct: 296 KGFARGLQQAGYATDPGYAAKIAAI 320
>gi|21231392|ref|NP_637309.1| flagellar protein [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|21113057|gb|AAM41233.1| flagellar protein [Xanthomonas
campestris pv. campestris str. ATCC 33913]
Length = 361
Score = 50.4 bits (119), Expect = 2e-05
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 11/145 (7%)
Query: 43 TKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILAN--KYHNLFGLLA---E 97
T E F+ KI AQ + G+ P ++AQAAL++ +G + + N +NLFG+ A
Sbjct: 183 TPEGFVAKIWTHAQKAARELGVDPRALVAQAALETGWGRRGIGNGGDSNNLFGIKATGWN 242
Query: 98 PGTPSITLNDSSTGKK--QEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNP 155
+ ++ G K + F Y S + S DY+ +K+ + + T + + +
Sbjct: 243 GAKVTTGTHEYVNGVKTTETADFRAYGSAEESFADYVRLLKNNSRYQ----TALQAGTDI 298
Query: 156 KTLVQKLQDSGFDNDKKYAKKMTEI 180
K + LQ +G+ D YA K+ I
Sbjct: 299 KGFARGLQQAGYATDPGYAAKIAAI 323
>gi|28379158|ref|NP_786050.1| muramidase [Lactobacillus plantarum
WCFS1]
gi|28271996|emb|CAD64901.1| muramidase [Lactobacillus plantarum
WCFS1]
Length = 785
Score = 50.1 bits (118), Expect = 2e-05
Identities = 42/162 (25%), Positives = 72/162 (43%), Gaps = 10/162 (6%)
Query: 34 ANSRQSVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANKYHNLFG 93
A S +++T ++E F+ +I A Y + PS AQA L+S +G+ LA + +NLFG
Sbjct: 235 ARSTRAMT-SQEIFLSQIKAGAISGWNKYQVLPSVTAAQAILESGWGQSQLATQGNNLFG 293
Query: 94 LLAEPGTPSITLNDSSTGKKQ----EKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYTIM 149
+ SI Q + F Y +W S+ D+ A + Y+ +
Sbjct: 294 IKGSYQGQSIYFPTQEWNGSQYITIQDAFRKYPNWSASVEDHGAFLVVNP-----RYSNL 348
Query: 150 VSVKNPKTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYDK 191
+ V + + + LQ G+ YA + II+ L +D+
Sbjct: 349 IGVTDYRRVASLLQQDGYATAPTYASSLISIIEYNKLHEWDQ 390
>gi|23037709|ref|ZP_00069913.1| hypothetical protein [Oenococcus
oeni MCW]
Length = 208
Score = 48.9 bits (115), Expect = 5e-05
Identities = 44/147 (29%), Positives = 66/147 (43%), Gaps = 10/147 (6%)
Query: 39 SVTYTKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLAE 97
S+T ++ ++ IVP A ++ S G+ S ++AQA L+S FG LA Y+NLFG+ A
Sbjct: 61 SLTTAQKNWLNSIVPAAAEVADSNGLYASVMVAQAILESSFGTSALAAAPYNNLFGIKAS 120
Query: 98 -----PGTPSITLNDSSTGK--KQEKQFTHYKSWKYSMYDYLAHIKSGATGKKDSY-TIM 149
G S + + + + F Y S S YDYL + G T Y +
Sbjct: 121 YSPYVSGYASFSTTEYVGNQYITVKASFNTYSSVTNSFYDYLYKMNHGVTWNTSLYHNVF 180
Query: 150 VSVKNPKTLVQK-LQDSGFDNDKKYAK 175
SV + K L G+ D Y +
Sbjct: 181 RSVAGSYSQAAKNLVSDGYATDLTYGQ 207
>gi|16804728|ref|NP_466213.1| similar to autolysin,
N-acetylmuramidase [Listeria monocytogenes EGD-e]
gi|25513990|pir||AB1411 autolysin, N-acetylmuramidase homolog
lmo2691 [imported] - Listeria monocytogenes (strain
EGD-e)
gi|16412191|emb|CAD00904.1| lmo2691 [Listeria monocytogenes]
Length = 590
Score = 48.5 bits (114), Expect = 6e-05
Identities = 44/155 (28%), Positives = 67/155 (42%), Gaps = 7/155 (4%)
Query: 43 TKEEFIQKIVPDAQDLGKSYGIRPSFIIAQAALDSDFGEKILANK-YHNLFGLLAEPGTP 101
T + FIQ I + + + S +IAQA L+S +G L + +NLFG+
Sbjct: 149 TVQSFIQTIQASSSQIAAENDLYASVMIAQAILESAYGTSELGSAPNYNLFGIKGAYNGQ 208
Query: 102 SI---TLNDSSTGKKQ--EKQFTHYKSWKYSMYDYLAHIKSGATGKKDSYT-IMVSVKNP 155
S TL D G +F Y S+ S+ DY I+ G + + Y+ S
Sbjct: 209 SYTKQTLEDDGKGNYYTITAKFRKYPSYHQSLEDYAQVIRKGPSWNPNYYSKAWKSNTTS 268
Query: 156 KTLVQKLQDSGFDNDKKYAKKMTEIIDLYDLTRYD 190
K + D YA K+ ++I Y+LT+YD
Sbjct: 269 YKDATKALTGTYATDTAYATKLNDLISRYNLTQYD 303
>gi|2394284|gb|AAB70257.1| hemagglutinin [Prevotella intermedia]
Length = 309
Score = 47.8 bits (112), Expect = 1e-04
Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 62 YGIRPSFIIAQAALDSDFGEKILANKYHNLFGLLAEPGT-PSITLNDSSTGKKQEKQFTH 120
YGI S +AQ L+S G LA +N FG+ T PSI+ +D G+
Sbjct: 48 YGIPASITLAQGVLESGAGNSRLATVANNHFGIKCHDWTGPSISHDDDELGE-------C 100
Query: 121 YKSWKYSMYDYLAHIKSGATGKKDSYTIMVSVKNPKTLVQKLQDSGFDNDKKYAKKMTEI 180
++ + ++ Y H K K+ S ++S + + L+ +G+ + YA + +I
Sbjct: 101 FRVYNNAVESYEDHSKFLRGRKRYSNLFLLSKTDYRGWAHGLKRAGYATNPVYAYSLIDI 160
Query: 181 IDLYDLTRYD 190
I+LY L YD
Sbjct: 161 IELYRLYEYD 170
Database: nr
Posted date: Aug 11, 2003 9:58 AM
Number of letters in database: 479,114,161
Number of sequences in database: 1,487,057
Lambda K H
0.320 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,048,674
Number of Sequences: 1487057
Number of extensions: 7248436
Number of successful extensions: 19115
Number of sequences better than 1.0e-04: 79
Number of HSP's better than 0.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 19012
Number of HSP's gapped (non-prelim): 79
length of query: 191
length of database: 479,114,161
effective HSP length: 117
effective length of query: 74
effective length of database: 305,128,492
effective search space: 22579508408
effective search space used: 22579508408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)