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The funding for the HCV database project has stopped, and this website and the HCV immunology database are no longer maintained. The site will stay up, but problems will not be fixed. The database was last updated in September 2007. The HIV immunology website contains the same tools, and may be usable for non-HCV-specific analyses. For new epitope information, users of this database can try the Immuno Epitope Database (http://www.immuneepitope.org). More information is here.

HCV Binding Motif Scanner Motif Dictionary

Download the HLA genotype/motif dictionary.

Genotype Motif Reference
A*01 xx[DE]xxxxx[Y] SYFPEITHI
A*0101 xx[DE]xxxxx[Y] Marsh2000
A*0201 x[L(M)]xxxxxx[V(L)] Marsh2000
A*0201 x[LM]xxxxxx[VL] SYFPEITHI
A*0202 x[L]xxxxxx[L] Marsh2000
A*0202 x[L(A)]xxxxxx[LV] SYFPEITHI
A*0204 x[L]xxxxxx[L] Marsh2000
A*0204 x[L]xxxxxx[L] SYFPEITHI
A*0205 x[V(QL)]xxxxxx[L] Marsh2000
A*0205 xxxxxxxx[L] SYFPEITHI
A*0206 x[V(Q)]xxxxxxx Marsh2000
A*0206 x[V(Q)]xxxxxx[V(L)] SYFPEITHI
A*0207 x[L][D]xxxxx[L] Marsh2000
A*0207 x[L]xxxxxx[L] SYFPEITHI
A*0214 x[QV]xxx[K]xx[VL] Luscher2001
A*0214 x[VQ(L)]xxxxxx[L] Marsh2000
A*0214 x[VQL(A)]xxxxxx[L(VM)] SYFPEITHI
A*0217 x[L]xxxxxx[L] SYFPEITHI
A*03 x[LVM]xxxxxx[KYF] SYFPEITHI
A*0301 x[LVM(IAST)]xxxxxx[KY(FR)] Marsh2000
A*1101 xxxxxxxx[K] Marsh2000
A*1101 xxxxxxxx[KR] SYFPEITHI
A*24 x[Y(F)]xxxxxx[ILF] SYFPEITHI
A*2402 x[YF]xxxxxx[FWIL] Marsh2000
A*2402 x[YF]xxxxxx[LFI] SYFPEITHI
A*2501 xxxxxxxxx[W] Yusim2004
A*2601 x[VTIFL]xxxxxx[YF] Marsh2000
A*2601 x[VTILF]xxxxxx[YF] SYFPEITHI
A*2602 x[VTILF]xxxxxx[YFML] Marsh2000
A*2602 x[VTILF]xxxxxx[YF(ML)] SYFPEITHI
A*2603 x[VFILT]xxxxxx[YFML] Marsh2000
A*2603 x[VTILF]xxxxxx[YFML] SYFPEITHI
A*2902 x[E(M)]xxxxxx[Y(L)] Marsh2000
A*2902 x[E(M)]xxxxxx[Y(L)] SYFPEITHI
A*3001 x[YF(VLMIT)]xxxxxx[L(YFM)] SYFPEITHI
A*3002 x[YFLV]xxxxxx[Y] SYFPEITHI
A*3003 x[FYIVL]xxxxxx[Y] SYFPEITHI
A*3004 xxxxxxxx[YML] SYFPEITHI
A*3101 xxxxxxxx[R] Marsh2000
A*3101 xxxxxxxx[R] SYFPEITHI
A*3201 x[I]xxxxxxx[W] Yusim2004
A*3303 xxxxxxxx[R] Marsh2000
A*3303 xxxxxxxx[R] SYFPEITHI
A*6601 x[TV(APLIC)]xxxxxx[RK] SYFPEITHI
A*6801 x[VT]xxxxxx[RK] Marsh2000
A*6801 x[VT]xxxxxx[RK] SYFPEITHI
A*6802 x[TV]xxxxxx[VL] Yusim2004
A*6901 x[VT(A)]xxxxxx[VL] Marsh2000
A*6901 x[VTA]xxxxxx[VL(MQ)] SYFPEITHI
B*07 x[P]xxxxxx[LF] SYFPEITHI
B*0702 x[P]xxxxxx[L(F)] Marsh2000
B*0702 x[P(V)]xxxxxx[L] SYFPEITHI
B*0703 x[P]xxxxxxx Marsh2000
B*0703 x[P(ND)]xxxxxx[L] SYFPEITHI
B*0705 x[P]xxxxxxx Marsh2000
B*0705 x[P]xxxxxx[L(F)] SYFPEITHI
B*08 xx[K(R)]x[KR]xxx[L(FM)] SYFPEITHI
B*0801 xx[K(R)]x[K(RH)]xxxx Marsh2000
B*0801 xx[K(R)]xxxxxx SYFPEITHI
B*0802 xx[K(RY)]x[K(H)]xxxx Marsh2000
B*0802 xx[K(RY)]x[K(H)]xxxx SYFPEITHI
B*14 x[RK]xx[RH]xxx[L] SYFPEITHI
B*1402 x[R(K)]xx[R(H)]xxx[L] Marsh2000
B*1501 x[Q(LMVP)]xxxxxxx[YF] Marsh2000
B*1501 x[QL(MVP)]xxxxxxx[FY] SYFPEITHI
B*1502 xxxxxxxx[YF(M)] Marsh2000
B*1502 x[QLVP]xxxxxx[FYM] SYFPEITHI
B*1503 x[QK]xxxxxx[YF] SYFPEITHI
B*1508 x[P(A)]xxxxxx[YF] Marsh2000
B*1508 x[PA]xxxxxx[YF] SYFPEITHI
B*1509 x[H]xxxxxx[L(F)] Marsh2000
B*1509 x[H]xxxxxx[LFM] SYFPEITHI
B*1510 x[H]xxxxxx[L(F)] SYFPEITHI
B*1512 x[Q(LM)]xxxxxx[YF] SYFPEITHI
B*1513 xxxxxxxx[W] Marsh2000
B*1513 x[LIQVPM]xxxxxx[W] SYFPEITHI
B*1516 x[T(S)]xxxxxx[Y(IVFM)] Marsh2000
B*1516 x[ST(F)]xxxxxx[IVYF] SYFPEITHI
B*1517 x[TS]xxxx[L]x[Y(F)] Marsh2000
B*1517 x[TS]xxxxxx[YFLI] SYFPEITHI
B*1518 x[H]xxxxxx[Y(F)] SYFPEITHI
B*18 x[E]xxxxxxx Marsh2000
B*27 x[R]xxxxxxx SYFPEITHI
B*2701 x[RQ]xxxxxx[Y] Marsh2000
B*2701 x[RQ]xxxxxx[Y] SYFPEITHI
B*2702 x[R]xxxxxx[FY(ILW)] Marsh2000
B*2702 x[R]xxxxxx[FYILW] SYFPEITHI
B*2703 x[R(M)]xxxxxxx Marsh2000
B*2703 x[R]xxxxxx[YF(RMWL)] SYFPEITHI
B*2704 x[R]xxxxxx[YLF] Marsh2000
B*2704 x[R]xxxxxx[YLF] SYFPEITHI
B*2705 x[R(K)]xxxxxxx Marsh2000
B*2705 x[R]xxxxxx[LFYRHK(MI)] SYFPEITHI
B*2706 x[R]xxxxxx[L] Marsh2000
B*2706 x[R]xxxxxx[L] SYFPEITHI
B*2707 x[R]xxxxxx[L] Marsh2000
B*2707 x[R]xxxxxx[LF] SYFPEITHI
B*2709 x[R]xxxxxx[LVFIM] Marsh2000
B*2710 x[R]xxxxxx[YF] Marsh2000
B*35 x[P(AVYRD)]xxxxxx[YFMLI] SYFPEITHI
B*3501 x[P(AV)]xxxxxxx Marsh2000
B*3501 x[P(AVYRD)]xxxxxx[YFMLI] SYFPEITHI
B*3503 x[P(A)]xxxxxx[ML(F)] Marsh2000
B*3503 x[P(MILFV)]xxxxxx[ML(F)] SYFPEITHI
B*3505 x[P]xxxxxx[F] Kenneally2000
B*3701 x[D(E)]xxxxx[FML][IL] Marsh2000
B*3701 x[DE(HPGSL)]xxxxx[FML(QKYL)][IL(TENDQGH)] SYFPEITHI
B*3801 xxxxxxxx[FL] Marsh2000
B*3801 xxxxxxxx[FL(I)] SYFPEITHI
B*3901 x[RH]xxxxxx[L] Marsh2000
B*3901 x[RH]xxxxxx[L(VIM)] SYFPEITHI
B*3902 x[KQ]xxxxxx[L] Marsh2000
B*3902 x[KQ]xxxxxx[L(FM)] SYFPEITHI
B*3909 x[RH(P)]xxxxxx[LF] SYFPEITHI
B*40 x[E]xxxxxx[LWMATR] SYFPEITHI
B*4001 x[E]xxxxxx[L] Marsh2000
B*4001 x[E]xxxxxx[L] SYFPEITHI
B*4002 x[E]xxxxxx[IAVL] Yusim2004
B*4006 x[E]xxxxxx[V] Marsh2000
B*4006 x[E(P)]xxxxxx[V(AP)] SYFPEITHI
B*4201 x[P]xxxxxx[L] Yusim2004
B*44 x[E]xxxxxx[Y] SYFPEITHI
B*4402 x[E]xxxxxx[YF] Marsh2000
B*4402 x[E(MILD)]xxxxxx[FY] SYFPEITHI
B*4403 x[E]xxxxxx[YF] Marsh2000
B*4403 x[E(MILVD)]xxxxxx[YF] SYFPEITHI
B*4601 xxxxxxxx[YF] Marsh2000
B*4601 x[M(I)]xxxxxx[YF] SYFPEITHI
B*4801 x[QK]xxxxxx[L] Marsh2000
B*4801 x[QK(M)]xxxxxx[L] SYFPEITHI
B*5101 xxxxxxxx[FI] Marsh2000
B*5101 x[APG(WF)]xxxxxx[VI(WMVL)] SYFPEITHI
B*5102 x[APG]xxxxxx[IV] Marsh2000
B*5102 x[APG]xxxxxx[IV] SYFPEITHI
B*5103 xxxxxxxx[VIF] Marsh2000
B*5103 x[APG(FW)]xxxxxx[VIF] SYFPEITHI
B*5201 xxxxxxx[IV][IV] Marsh2000
B*5201 xxxxxxx[IV(MF)][IV(MF)] SYFPEITHI
B*5301 x[P]xxxxxxx Marsh2000
B*5301 x[P]xxxxxx[WFL] SYFPEITHI
B*5401 x[P]xxxxxxx Marsh2000
B*5401 x[P]xxxxxxx SYFPEITHI
B*5501 x[P]xxxxxxx Marsh2000
B*5501 x[P]xxxxxxx SYFPEITHI
B*5502 x[P]xxxxxxx Marsh2000
B*5502 x[P]xxxxxxx SYFPEITHI
B*5601 x[P]xxxxxxx Marsh2000
B*5601 x[P]xxxxxx[A(L)] SYFPEITHI
B*5701 x[ATS]xxxxxx[FW] Marsh2000
B*5701 x[ATS]xxxxxx[FWY] SYFPEITHI
B*5702 x[ATS]xxxxxx[FW] Marsh2000
B*5702 x[ATS]xxxxxx[FW] SYFPEITHI
B*5801 x[ATS]xxxxxx[WF] Marsh2000
B*5801 x[AST(G)]xxxxxx[FW(Y)] SYFPEITHI
B*5802 x[ST]xxx[R]xx[F] Marsh2000
B*5802 x[ST]xxx[R]xx[F] SYFPEITHI
B*6701 x[P]xxxxxxx Marsh2000
B*6701 x[P]xxxxxxx SYFPEITHI
B*7301 x[R]xxxxxx[P] Marsh2000
B*7301 x[R]xxxxxx[P] SYFPEITHI
B*7801 x[PAG]xxxxxxx Marsh2000
B*7801 x[PAG]xxxxx[A(KS)]x SYFPEITHI
B*8101 x[P]xxxxxx[L] Yusim2004
Cw*0102 xx[P]xxxxx[L] Marsh2000
Cw*0102 x[AL]xxxxxx[L] SYFPEITHI
Cw*0103 x[AL]xxxxxx[L] Yusim2004
Cw*0202 x[A]xxxxxx[L] Yusim2004
Cw*0203 x[A]xxxxxx[L] Yusim2004
Cw*0301 xxxxxxxx[LFMI] SYFPEITHI
Cw*0302 x[A]xxxxxx[FWY] Yusim2004
Cw*0303 x[A]xxxxxx[LM] Yusim2004
Cw*0304 x[A]xxxxxx[LM] Marsh2000
Cw*0304 x[A]xxxxxx[LM] SYFPEITHI
Cw*0305 x[A]xxxxxx[LM] Yusim2004
Cw*0306 x[A]xxxxxx[LM] Yusim2004
Cw*0307 x[A]xxxxxx[LF] Yusim2004
Cw*0308 x[A]xxxxxx[LM] Yusim2004
Cw*0309 x[A]xxxxxx[LM] Yusim2004
Cw*0401 x[YP]xxxxxxx Marsh2000
Cw*0401 x[YPF]xxxxxx[LFM] SYFPEITHI
Cw*0402 x[YP]xxxxxx[LF] Yusim2004
Cw*0403 x[P]xxxxxx[LF] Yusim2004
Cw*0404 x[YP]xxxxxx[LF] Yusim2004
Cw*0405 x[YP]xxxxxx[LF] Yusim2004
Cw*0406 x[P]xxxxxx[LF] Yusim2004
Cw*0501 x[A]xxxxxx[LF] Yusim2004
Cw*0502 x[A]xxxxxx[LF] Yusim2004
Cw*0601 xxxxxxxx[LIVY] SYFPEITHI
Cw*0602 xxxxxxxx[L] Marsh2000
Cw*0602 xxxxxxxx[LIVY] SYFPEITHI
Cw*0603 x[ALP]xxxxxx[L] Yusim2004
Cw*0604 x[RQ]xxxxxx[L] Yusim2004
Cw*0701 x[RHK]xxxxxx[Y] Yusim2004
Cw*0702 xxxxxxxx[YFL] SYFPEITHI
Cw*0703 x[YP]xxxxxx[YL] Yusim2004
Cw*0704 x[RQ]xxxxxx[LM] Yusim2004
Cw*0705 x[RQ]xxxxxx[Y] Yusim2004
Cw*0706 x[RHK]xxxxxx[Y] Yusim2004
Cw*0707 x[RHK]xxxxxx[YL] Yusim2004
Cw*0708 x[RQ]xxxxxx[YL] Yusim2004
Cw*0709 x[RHK]xxxxxx[YL] Yusim2004
Cw*0710 x[YP]xxxxxx[FWY] Yusim2004
Cw*0711 x[R]xxxxxx[LM] Yusim2004
Cw*0712 x[R]xxxxxx[LM] Yusim2004
Cw*0801 x[A]xxxxxx[LM] Yusim2004
Cw*0802 x[A]xxxxxx[LM] Yusim2004
Cw*0803 x[A]xxxxxx[LM] Yusim2004
Cw*0804 x[A]xxxxxx[LM] Yusim2004
Cw*0805 x[A]xxxxxx[LM] Yusim2004
Cw*0806 x[A]xxxxxx[LM] Yusim2004
Cw*1202 x[A]xxxxxx[FWY] Yusim2004
Cw*1203 x[A]xxxxxx[FWY] Yusim2004
Cw*1204 x[A]xxxxxx[L] Yusim2004
Cw*1205 x[A]xxxxxx[L] Yusim2004
Cw*1206 x[A]xxxxxx[FWY] Yusim2004
Cw*1402 x[YP]xxxxxx[FWY] Yusim2004
Cw*1403 x[YP]xxxxxx[FWY] Yusim2004
Cw*1404 x[YP]xxxxxx[FWY] Yusim2004
Cw*1502 x[A]xxxxxx[LMYF] Yusim2004
Cw*1503 x[A]xxxxxx[LMYF] Yusim2004
Cw*1504 x[A]xxxxxx[L] Yusim2004
Cw*1505 x[A]xxxxxx[L] Yusim2004
Cw*1506 x[A]xxxxxx[LM] Yusim2004
Cw*1507 x[A]xxxxxx[LMY] Yusim2004
Cw*1601 x[A]xxxxxx[FWY] Yusim2004
Cw*1602 x[A]xxxxxx[L] Yusim2004
Cw*1604 x[A]xxxxxx[L] Yusim2004
Cw*1701 x[A]xxxxxx[L] Yusim2004
Cw*1702 x[A]xxxxxx[L] Yusim2004
Cw*1801 x[RQ]xxxxxx[LY] Yusim2004
Cw*1802 x[RQ]xxxxxx[LY] Yusim2004
DPA1*0102/DPB1*0201 [FLMVWY]xxx[FLMY]xx[IAMV] SYFPEITHI
DPA1*0103/DPB1*0201 [YLVFK]xx[DSQT]x[YFWV]xx[LVI] Marsh2000,Chicz1997
DPA1*0103/DPB1*0201 [FLM]xxx[FL]xx[IA] Marsh2000,Rotzschke1994
DPA1*0201/DPB1*0401 [FLYM(IVA)]xxxxx[FLY(MVIA)]xx[VYI(AL)] Marsh2000
DPA1*0201/DPB1*0401 [FLYMIVA]xxxxx[FLYMVIA]xx[VYIAL] SYFPEITHI
DPA1*0201/DPB1*0901 [RK]xxxx[AGL]xx[LV] Marsh2000
DPB1*0301 x[R]xxxxxxx Marsh2000
DQA1*0101/DQB1*0501 [L]xxx[YFW] Marsh2000
DQA1*0102/DQB1*0602 xxxxx[LIV(APST)]xx[AGST(LIVP)] Marsh2000
DQA1*0301/DQB1*0301 xx[AGST]x[AVLI] Marsh2000
DQA1*0301/DQB1*0301 [DEW]xx[AGST]x[ACLM] SYFPEITHI
DQA1*0301/DQB1*0302 [RK]xxxx[AG]xx[NED] Marsh2000
DQA1*0301/DQB1*0302 [TSW]xxxxxxx[RE] SYFPEITHI
DQA1*0501/DQB1*0201 [FWYILV]xx[DELVIH]x[PDE(H)][ED]x[FYWVILM] Marsh2000
DQA1*0501/DQB1*0201 [FWYILV]xx[DELVIH]x[PDEHPA][DE]x[FWYILVM] SYFPEITHI
DQA1*0501/DQB1*0301 [FYIMLV]xxx[VLIMY]x[YFMLVI] Marsh2000
DQA1*0501/DQB1*0301 [WYAVM]xx[A]x[AIVTS]xxx[QN] SYFPEITHI
DQB1*0602 [AFCILMNQSTVWYDE]x[AFGILMNQSTVWYCDE][AFGILMNQSTVWY]x[LIVAPST]xx[ASTGLIVP] SYFPEITHI
DRB1*0101 [YFWLIMVA]xx[LMAIVN]x[AGSTCP]xx[LAIVNFYMW] Marsh2000
DRB1*0101 [YVLFIAMW]xx[LAIVMNQ]x[AGSTCP]xx[LAIVNFY] SYFPEITHI
DRB1*0102 [ILVM]xx[ALM]x[AGSTCP]xx[ILAMYW] Marsh2000
DRB1*0102 [ILVM]xx[ALM]x[AGSTP]xx[ILAMYW] SYFPEITHI
DRB1*0301 [LIFMV]xx[D]x[KR(EQN)]x[L][YLF] Marsh2000,Malcherek1993
DRB1*0301 [LIFMV]xx[D]x[KREQN]xx[YLF] SYFPEITHI
DRB1*0301 or DRB3*0201 [FILVY]xx[DNQT] Marsh2000,Chicz1992
DRB1*0401 [FLV]xxxxxxx[NQST] Marsh2000
DRB1*0401 or DRB4 [FYWILVM]xx[FWILVADE]x[NSTQHR]xx[K] Marsh2000,Friede1996
DRB1*0401 or DRB4*0101 [FYW]xxxxxxx[ST] Marsh2000,Verreck1995
DRB1*0401 or DRB4*0101 [FYWILVM]xx[PWILVADE]x[NSTQHR][DEHKNQRSTYACILMV]x[DEHKNQRSTYACILMV] SYFPEITHI
DRB1*0402 or DRB4 [VILM]xx[YFWILMRNH]x[NSTQHK]x[RKHNQP]x[H] Marsh2000
DRB1*0402 or DRB4 [VILM]xx[YFWILMRN]x[NQSTK][RKHNQP]x[DEHLNQRSTYCILMVHA] SYFPEITHI
DRB1*0404 or DRB4 [VILM]xx[FYWILVMADE]x[NTSQR]xx[K] Marsh2000
DRB1*0404 or DRB4 [VILM]xx[FYWILVMADE]x[NTSQR]xx[K] SYFPEITHI
DRB1*0405 or DRB4 [FYWVILM]xx[VILMDE]x[NSTQKD]xxx[DEQ] Marsh2000
DRB1*0405 or DRB4 [FYWVILM]xx[VILMDE]x[NSTQKD]xxx[DEQ] SYFPEITHI
DRB1*0405 or DRB4*0101 [Y]xxxx[VT]xxx[D] Marsh2000
DRB1*0407 or DRB4 [FYW]xx[AVTK]x[NTDS]xxx[QN] Marsh2000
DRB1*0407 or DRB4 [FYW]xx[AVK]x[NTDS]xxx[QN] SYFPEITHI
DRB1*0701 [FILVY]xxxx[NST] Marsh2000
DRB1*0701 [FYWILV]xx[DEHKNQRSTY]x[NST]xx[VILYF] SYFPEITHI
DRB1*0801 [FILVY]xxx[HKR] Marsh2000
DRB1*0901 or DRB4*0101 [YFWL]xx[AS] Marsh2000
DRB1*0901 or DRB4*0101 [WYFL]xx[AVS] SYFPEITHI
DRB1*1101 [YF]xx[LVMAFY]x[RKH]xx[AGSP] Marsh2000
DRB1*1101 [WYF]xx[LVMAFY]x[RKH]xx[AGSP] SYFPEITHI
DRB1*1101 or DRB3*0202 [YF]xxxx[RK]x[RK] Marsh2000
DRB1*1104 [ILV]xx[LVMAFY]x[RKH]xx[AGSP] Marsh2000
DRB1*1104 [ILV]xx[LVMAFY]x[RKH]xx[AGSP] SYFPEITHI
DRB1*1201 or DRB3 [ILFY(V)]x[LNM(VA)]xx[VY(FIN)]xx[YFM(IV)] Marsh2000
DRB1*1201 or DRB3 [ILFYV]x[LMNVA]xx[VYFINA]xx[YFMIV] SYFPEITHI
DRB1*1301 [IVF]xx[YWLVAM]x[RK]xx[YFAST] Marsh2000
DRB1*1301 [ILV]xx[LVMAWY]x[RK]xx[YFAST] SYFPEITHI
DRB1*1301 or DRB3*0101 [ILV]xxxx[RK]xx[Y] Marsh2000
DRB1*1302 [YFVAI]xx[YWLVAM]x[RK]xx[YFAST] Marsh2000
DRB1*1302 [YFVAI]xx[LVMAWY]x[RK]xx[YFAST] SYFPEITHI
DRB1*1302 or DRB3*1301 [ILFY]xxxx[RK]xx[Y] Marsh2000
DRB1*1501 [LVI]xx[FYI]xx[ILVMF] Marsh2000
DRB1*1501 [LVI]xx[FYI]xx[ILVMF] SYFPEITHI
DRB1*1501 or DRB5*0101 [ILV]xxxxxxxx[HKR] Marsh2000
DRB3*0202 [YFIL]xx[N]x[ASPDE]xx[LVISG] Marsh2000
DRB3*0202 [YFIL]xx[N]x[ASPDE]xx[LVISG] SYFPEITHI
DRB3*0301 [ILV]xx[N]x[ASPDE]xx[ILV] Marsh2000
DRB3*0301 [ILV]xx[N]x[ASPDE]xx[ILV] SYFPEITHI
DRB5*0101 [FYLM]xx[QVIM]xxxx[RK] Marsh2000
DRB5*0101 [FYLM]xx[QVIM]xxxx[RK] SYFPEITHI
Last modified: Fri Aug 15 08:59:29 MDT 2003
 
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