BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= AA00890
(300 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52425387|ref|YP_088524.1| hypothetical protein MS1332 [M... 173 9e-42
gi|46143574|ref|ZP_00134934.2| hypothetical protein Aple020... 172 3e-41
gi|126208901|ref|YP_001054126.1| hypothetical protein APL_1... 170 1e-40
gi|145639471|ref|ZP_01795076.1| hypothetical protein CGSHiI... 165 3e-39
gi|68249286|ref|YP_248398.1| hypothetical protein NTHI0837 ... 161 4e-38
gi|148827879|ref|YP_001292632.1| hypothetical protein CGSHi... 161 5e-38
gi|42630974|ref|ZP_00156512.1| COG1196: Chromosome segregat... 161 6e-38
gi|148826647|ref|YP_001291400.1| hypothetical protein CGSHi... 160 7e-38
gi|153094318|gb|EDN75179.1| hypothetical protein MHA_2292 [... 157 5e-37
gi|33151446|ref|NP_872799.1| hypothetical protein HD0195 [H... 152 3e-35
gi|46156749|ref|ZP_00132171.2| COG0187: Type IIA topoisomer... 143 2e-32
gi|113461327|ref|YP_719396.1| hypothetical protein HS_1184 ... 142 3e-32
gi|52425386|ref|YP_088523.1| hypothetical protein MS1331 [M... 142 3e-32
gi|145629586|ref|ZP_01785383.1| hypothetical protein CGSHi2... 137 9e-31
gi|152978765|ref|YP_001344394.1| hypothetical protein Asuc_... 124 9e-27
gi|15602847|ref|NP_245919.1| hypothetical protein PM0982 [P... 105 3e-21
gi|126642759|ref|YP_001085743.1| hypothetical protein A1S_2... 94 9e-18
gi|148653842|ref|YP_001280935.1| hypothetical protein PsycP... 76 2e-12
gi|50085963|ref|YP_047473.1| hypothetical protein ACIAD2936... 75 4e-12
gi|153806707|ref|ZP_01959375.1| hypothetical protein BACCAC... 75 7e-12
gi|156860780|gb|EDO54211.1| hypothetical protein BACUNI_022... 73 2e-11
gi|156108848|gb|EDO10593.1| hypothetical protein BACOVA_040... 69 3e-10
gi|29346554|ref|NP_810057.1| hypothetical protein BT_1144 [... 69 3e-10
gi|53713317|ref|YP_099309.1| hypothetical protein BF2028 [B... 69 3e-10
gi|93005253|ref|YP_579690.1| hypothetical protein Pcryo_042... 65 3e-09
gi|154688014|ref|YP_001423175.1| hypothetical protein RBAM_... 63 2e-08
gi|124010108|ref|ZP_01694768.1| hypothetical protein M23134... 60 1e-07
gi|115422916|emb|CAJ49444.1| putative lipoprotein [Bordetel... 60 2e-07
gi|154148317|ref|YP_001406963.1| hypothetical protein CHAB3... 59 4e-07
gi|110832900|ref|YP_691759.1| hypothetical protein ABO_0039... 57 2e-06
gi|50084931|ref|YP_046441.1| hypothetical protein ACIAD1781... 55 5e-06
>gi|52425387|ref|YP_088524.1| hypothetical protein MS1332 [Mannheimia succiniciproducens MBEL55E]
gi|52307439|gb|AAU37939.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 351
Score = 173 bits (439), Expect = 9e-42, Method: Composition-based stats.
Identities = 112/328 (34%), Positives = 181/328 (55%), Gaps = 40/328 (12%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQ- 59
M K ++ LI+ +L+L+AC+D+E +L EQ+Q Q I QL +++ A++
Sbjct: 18 MSKTTLSLLISATLLLSACNDEEVRSLKEQLQTSRQQIAQLQAELQQTNATSTIKADSAQ 77
Query: 60 -----------------------TIRVEPEVLFEKSETIKFD-KKSADSYTP--ESGEVK 93
T+ V+P +F+K+E F+ K + P E +
Sbjct: 78 PEAAISPTEDTAIQGKIIQDEIPTLYVKPVTVFDKTEKFNFNVSKKPKNNEPLYEESHIH 137
Query: 94 VNVKTLKTGEDWLTDLLLNELIRQFT---ASGQVKIEN----KQQLVEWLQALYTDSVKE 146
+ T++TG +WL LL L+ T A Q + E+ K + +++ Y +++ E
Sbjct: 138 YAMHTVETGIEWLDSLLYQNLMADITIEDADKQKEFESIPNAKDRYAAFIEYFYNNALPE 197
Query: 147 VKDNEMIGSSTEFSVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDID 206
+K+ +GS ++ Y+GQRENI TF ++ Y GGAHGMYST ++NID KKA++D++
Sbjct: 198 IKNGTTLGSDYYINLDYVGQRENILTFKVANYMYDGGAHGMYSTDYINIDSRKKAVIDLN 257
Query: 207 DVINPEQHQKLKDLLWD---AYRDSNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYA 263
++N ++ +LK+LLW AY +++N PFT+K F + + FYFS GV FVYPPYA
Sbjct: 258 TLVNKDKQNQLKELLWKSYLAYTNNDNSDIPFTEKQ-DFDISQQFYFSSEGVNFVYPPYA 316
Query: 264 IGSFSEGEKELTIYWWQLKENDLINPQF 291
+GSF+EGE L+I W K ++IN +
Sbjct: 317 LGSFAEGEITLSISWSDAK--NIINKDY 342
>gi|46143574|ref|ZP_00134934.2| hypothetical protein Aple02001364 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
Length = 358
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 110/318 (34%), Positives = 170/318 (53%), Gaps = 30/318 (9%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
M K +A L +G +L+ACDDK L E++Q+ Q I QL+EQ+ ++++ ++ T
Sbjct: 24 MNKTALALLFSGIFVLSACDDKNTQVLIEKLQQAEQKIAQLDEQLAKSQQELTAFQQSIT 83
Query: 61 ------------IRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTD 108
+ VE F K+E +KF ++ S E V KTG +WL +
Sbjct: 84 GKSDSALASFPALNVEIYPFFAKTERVKFKPQAKQEQAILSAEQYYFVSLAKTGFEWLDN 143
Query: 109 LLLNELIRQFT---ASGQVKIENK-------QQLVEWLQALYTDSVKEVKDNEMIGSSTE 158
LL +++ + A KI+ QL L Y +S++ +K+ + S
Sbjct: 144 LLAKQILISYQPVPADADSKIDRNAINGDELNQLKTVLDRDYQESLETLKEGMTLAISRT 203
Query: 159 FSVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLK 218
YLGQR NI TF +Y YSGGAH Y T++ NID+ KK ++ +DD+++P + +L
Sbjct: 204 AETLYLGQRHNIVTFFQNYDEYSGGAHNNYHTKYFNIDVNKKRIILLDDLLSPAKQVELS 263
Query: 219 DLLWDAYR-----DSNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKE 273
+LW Y D N + E FT K FYV +DF F+ +GV F+YPPYA+G F+EGE
Sbjct: 264 AMLWGYYEQRTPPDVNGKRETFTPKQ-DFYVSEDFLFTDDGVKFIYPPYALGPFAEGEIS 322
Query: 274 LTIYWWQLKENDLINPQF 291
LT+ W+++ N L+NP++
Sbjct: 323 LTVPWYEI--NQLLNPEY 338
>gi|126208901|ref|YP_001054126.1| hypothetical protein APL_1437 [Actinobacillus pleuropneumoniae L20]
gi|126097693|gb|ABN74521.1| hypothetical protein APL_1437 [Actinobacillus pleuropneumoniae L20]
Length = 335
Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 110/318 (34%), Positives = 170/318 (53%), Gaps = 30/318 (9%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
M K +A L +G +L+ACDDK L E++Q+ Q I QL+EQ+ ++++ ++ T
Sbjct: 1 MNKTALALLFSGIFVLSACDDKNTQVLIEKLQQAEQKIAQLDEQLAKSQQELTAFQQSIT 60
Query: 61 ------------IRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTD 108
+ VE F K+E +KF ++ S E V KTG +WL +
Sbjct: 61 GKSDSALASFPALNVEIYPFFAKTERVKFKPQAKQEQAILSAEQYYFVSLAKTGFEWLDN 120
Query: 109 LLLNELIRQFT---ASGQVKIENK-------QQLVEWLQALYTDSVKEVKDNEMIGSSTE 158
LL +++ + A KI+ QL L Y +S++ +K+ + S
Sbjct: 121 LLAKQILISYQPVPADADSKIDRNAINGDELNQLKTVLDRDYQESLETLKEGMTLAISRT 180
Query: 159 FSVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLK 218
YLGQR NI TF +Y YSGGAH Y T++ NID+ KK ++ +DD+++P + +L
Sbjct: 181 AETLYLGQRHNIVTFFQNYDEYSGGAHNNYHTKYFNIDVNKKRIILLDDLLSPAKQVELS 240
Query: 219 DLLWDAYR-----DSNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKE 273
+LW Y D N + E FT K FYV +DF F+ +GV F+YPPYA+G F+EGE
Sbjct: 241 AMLWGYYEQRTPPDVNGKRETFTPKQ-DFYVSEDFLFTDDGVKFIYPPYALGPFAEGEIS 299
Query: 274 LTIYWWQLKENDLINPQF 291
LT+ W+++ N L+NP++
Sbjct: 300 LTVPWYEI--NQLLNPEY 315
>gi|145639471|ref|ZP_01795076.1| hypothetical protein CGSHiII_04837 [Haemophilus influenzae PittII]
gi|145271518|gb|EDK11430.1| hypothetical protein CGSHiII_04837 [Haemophilus influenzae PittII]
Length = 284
Score = 165 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 104/291 (35%), Positives = 165/291 (56%), Gaps = 13/291 (4%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
MKK L+ATLI+ ++LT C DK+ A +Q+ QT+ QL+ + L+ Q+
Sbjct: 1 MKKTLVATLISSVILLTGCQDKDTEAKIKQLN---QTVAQLSAENTKLKDQIEKTVP--A 55
Query: 61 IRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFTA 120
I VE + +F +SE IK KS + Y PE +++ ++ T+KT DWL DLL +L T
Sbjct: 56 IFVENDEIFNQSEIIK-HPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKL----TE 110
Query: 121 SGQVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISYSGY 180
+ ++K +++Q V Q + + KE K+ G S ++GQ+E +ATF IS+ Y
Sbjct: 111 NEEMKTISREQFVARYQTAFEEDKKEAKETPSFGISHSIWTNFIGQKEKLATFAISFYDY 170
Query: 181 SGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDG 240
GGAHG+ ++ IDL + +L ++D+ N + K+K LLW+ Y +SN E EP + D
Sbjct: 171 EGGAHGIEGNRYFTIDLTTRHILTLNDLFNEKDLPKVKTLLWEQYNNSNKEYEPIIEAD- 229
Query: 241 GFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQF 291
F + + Y GV F+Y Y I ++ GE++L +Y+ QL+E L P+F
Sbjct: 230 SFSLSNNIYLDSKGVHFIYDVYEIAPYAAGEQDLLLYFGQLEE--LFKPEF 278
>gi|68249286|ref|YP_248398.1| hypothetical protein NTHI0837 [Haemophilus influenzae 86-028NP]
gi|68057485|gb|AAX87738.1| hypothetical protein NTHI0837 [Haemophilus influenzae 86-028NP]
Length = 284
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 102/291 (35%), Positives = 164/291 (56%), Gaps = 13/291 (4%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
MKK L+A LI+ ++LT C DK+ A +Q+ QT+ QL+ + L++Q+
Sbjct: 1 MKKTLVAALISSVILLTGCQDKDTEAKIKQLN---QTVAQLSAENTKLKEQIEKTVP--A 55
Query: 61 IRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFTA 120
I VE + +F +SE IK KS + Y PE +++ ++ T+KT DWL DLL +L T
Sbjct: 56 IIVENDEIFNQSEIIK-HPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKL----TE 110
Query: 121 SGQVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISYSGY 180
+ + K +++Q V Q + + KE K+ G S ++GQ+E +ATF IS+ Y
Sbjct: 111 NEETKNISREQFVARYQTAFEEDKKEAKETPSFGISHSIWTNFIGQKEKLATFAISFYDY 170
Query: 181 SGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDG 240
GGAHG+ ++ IDL + +L ++D+ N + K+K LLW+ Y +SN E EP + D
Sbjct: 171 EGGAHGIEGNRYFTIDLTTRHILTLNDLFNEKDLPKVKTLLWEQYNNSNKEYEPIIEAD- 229
Query: 241 GFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQF 291
F + + Y GV F+Y Y I ++ GE++L +++ QL+E L P+F
Sbjct: 230 SFNLSNNIYLDSKGVHFIYDVYEIAPYAAGEQDLMLHFGQLEE--LFKPEF 278
>gi|148827879|ref|YP_001292632.1| hypothetical protein CGSHiGG_06870 [Haemophilus influenzae PittGG]
gi|148719121|gb|ABR00249.1| hypothetical protein CGSHiGG_06870 [Haemophilus influenzae PittGG]
Length = 284
Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 101/291 (34%), Positives = 165/291 (56%), Gaps = 13/291 (4%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
MKK L+A LI+ ++LT C DK+ A +Q+ QT+ QL+++ L++Q+
Sbjct: 1 MKKTLVAALISSVILLTGCQDKDTEAKIKQLN---QTVAQLSDENTKLKEQIEKTIP--A 55
Query: 61 IRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFTA 120
I VE + +F +SE IK KS + Y PE +++ ++ T+KT DWL DLL +L T
Sbjct: 56 IFVENDEIFNQSEIIK-HPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKL----TE 110
Query: 121 SGQVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISYSGY 180
+ + K +++Q + Q + + KE K+ G S ++GQ+E +ATF IS+ Y
Sbjct: 111 NEETKNISREQFIARYQTAFEEDKKEAKETPSFGISHSMWTNFIGQKEKLATFAISFYDY 170
Query: 181 SGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDG 240
GGAHG+ ++ IDL + +L ++D+ N + K+K LLW+ Y +SN E EP + D
Sbjct: 171 EGGAHGIEGNRYFTIDLTTRHILTLNDLFNEKDLPKVKTLLWEQYNNSNKEYEPIIEAD- 229
Query: 241 GFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQF 291
F + + Y GV F+Y Y I ++ GE++L +++ QL+E L P+F
Sbjct: 230 SFSLSNNIYLDSKGVHFIYDVYEIAPYAAGEQDLMLHFGQLEE--LFKPEF 278
>gi|42630974|ref|ZP_00156512.1| COG1196: Chromosome segregation ATPases [Haemophilus influenzae
R2866]
Length = 284
Score = 161 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 101/291 (34%), Positives = 163/291 (56%), Gaps = 13/291 (4%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
MKK L+A LI+ ++LT C DK+ A +Q+ QT+ QL+ + L++Q+
Sbjct: 1 MKKTLVAALISSVILLTGCQDKDTEAKIKQLN---QTVAQLSAENTKLKEQIEKTVP--A 55
Query: 61 IRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFTA 120
I VE + +F +SE IK KS + Y PE +++ ++ T+KT DWL DLL +L T
Sbjct: 56 IFVENDEIFNQSEIIK-HPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKL----TE 110
Query: 121 SGQVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISYSGY 180
+ + K +++Q V Q + + KE K+ G S ++GQ+E +ATF IS+ Y
Sbjct: 111 NEETKTISREQFVARYQTTFEEDKKEAKETPSFGISHSIWTNFIGQKEKLATFAISFYDY 170
Query: 181 SGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDG 240
GG HG+ ++ IDL + +L ++D+ N + K+K LLW+ Y +SN E EP + D
Sbjct: 171 EGGVHGIEGNRYFTIDLTTRHILTLNDLFNEKDLPKVKTLLWEQYNNSNKEYEPIIEAD- 229
Query: 241 GFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQF 291
F + + Y GV F+Y Y I ++ GE++L +++ QL+E L P+F
Sbjct: 230 SFSLSNNIYLDSKGVHFIYDVYEIAPYAAGEQDLMLHFGQLEE--LFKPEF 278
>gi|148826647|ref|YP_001291400.1| hypothetical protein CGSHiEE_08590 [Haemophilus influenzae PittEE]
gi|148716807|gb|ABQ99017.1| hypothetical protein CGSHiEE_08590 [Haemophilus influenzae PittEE]
Length = 284
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 100/283 (35%), Positives = 159/283 (56%), Gaps = 11/283 (3%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
MKK L+A LI+ ++LT C DK+ A +Q+ QT+ QL+ + L+ Q+
Sbjct: 1 MKKTLVAALISSVILLTGCQDKDTEAKIKQLN---QTVAQLSAENTKLKDQIEKTIP--A 55
Query: 61 IRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFTA 120
I VE + +F +SE IK KS + Y PE +++ ++ T+KT DWL DLL +L T
Sbjct: 56 IFVENDEIFNQSEIIK-HPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKL----TE 110
Query: 121 SGQVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISYSGY 180
+ + K +++Q V Q + + KE K+ G S ++GQ+E +ATF IS+ Y
Sbjct: 111 NEETKTISREQFVARYQTAFEEDKKEAKETPSFGISHSIWTNFIGQKEKLATFAISFYDY 170
Query: 181 SGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDG 240
GGAHG+ ++ IDL + +L ++D+ N + K+K LLW+ Y +SN E EP + D
Sbjct: 171 EGGAHGIEGNRYFTIDLTTRHILTLNDLFNEKDLPKVKTLLWEQYNNSNKEYEPIIEAD- 229
Query: 241 GFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKE 283
F + + Y GV F+Y Y I ++ GE++L +Y+ QL+E
Sbjct: 230 SFSLSNNIYLDSKGVHFIYDVYEIAPYAAGEQDLLLYFGQLEE 272
>gi|153094318|gb|EDN75179.1| hypothetical protein MHA_2292 [Mannheimia haemolytica PHL213]
Length = 328
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 105/317 (33%), Positives = 165/317 (52%), Gaps = 29/317 (9%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQ-AQTIEQLNEQVKTLEKQVLDLAENQ 59
MKK L+A LI +++AC+D + T + +KQ Q +L L K+ ++AE
Sbjct: 1 MKKSLLALLIGSVFLISACEDGKMTQTVLEAEKQIVQLGTELKNAQADLAKKEAEVAELS 60
Query: 60 TIRVEPEVL--------------------FEKSETIKFDKKSADSYTPESGEVKVNVKTL 99
++ E E L F+K E IK + E V V
Sbjct: 61 GVKAENEKLKSELENAQQNTALNVEIVKIFDKKEVIKHQVDPKQEFAIEESTVSAFVSLP 120
Query: 100 KTGEDWLTDLLLNELIRQFTASG-QVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTE 158
KT DWL LL+N+ G ++K +++ + +A+Y V+ VK IG
Sbjct: 121 KTNFDWLNQLLINQAYDYNEEQGRKLKNPTEEEFKKHREAVYQGLVESVKTEPAIGYDDH 180
Query: 159 FSVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLK 218
S ++GQR NIATFT+ + Y GGAHGM+ TQ++N+DLAKKA++ ++D+I+P+ +LK
Sbjct: 181 ISSAFIGQRNNIATFTMMHYTYMGGAHGMHYTQYINVDLAKKAIIGLNDLISPKNQVQLK 240
Query: 219 DLLWDAYR----DSNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKEL 274
D+LW+ Y D N F K F + FYF+ +G+ FVYPPY +G+++EG+ E+
Sbjct: 241 DILWENYSSVRVDENGNYNGFADKK-EFRISDQFYFTPHGIAFVYPPYELGAYAEGDIEV 299
Query: 275 TIYWWQLKENDLINPQF 291
W+ + N L+N ++
Sbjct: 300 EADWYII--NKLLNSEY 314
>gi|33151446|ref|NP_872799.1| hypothetical protein HD0195 [Haemophilus ducreyi 35000HP]
gi|33147666|gb|AAP95188.1| hypothetical protein HD_0195 [Haemophilus ducreyi 35000HP]
Length = 332
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 100/321 (31%), Positives = 168/321 (52%), Gaps = 27/321 (8%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDL----- 55
M+K +A ++A L L+ACDDK+K L+E++ + + + +L + + ++ + L
Sbjct: 1 MQKSTLAAVLASVLFLSACDDKKKAILAEKLHQSERRVVELKQALLESQQMLRQLKAHFV 60
Query: 56 ----AENQTIRVEPEVLFEKSETIKFDKKSADS--YTPESGEVKVNVKTLKTGEDWLTDL 109
E ++ VE FEKS+ IKF+ + S Y S E V TG WL +L
Sbjct: 61 QTEQGEVPSLVVEIYPFFEKSDRIKFEMNANQSALYPISSAEQHYFVSLASTGFSWLDNL 120
Query: 110 LLNELIRQFTAS----------GQVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTEF 159
L +++ ++ + + + +L L Y +++ +K+ +G S+
Sbjct: 121 LAKQILMRYAKTPVDQPASIDINHIDGDELARLHAVLARDYAENLATLKEGVTLGISSTA 180
Query: 160 SVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKD 219
YLGQR NI TF+ +Y Y+GGAH Y T++LNID+ K ++ ++D++ + LK
Sbjct: 181 ETIYLGQRHNIVTFSQNYDEYTGGAHNNYYTKYLNIDVNNKRIILLEDLLAKAKQVALKA 240
Query: 220 LLWDAY---RDSNNEAEPFT-QKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELT 275
LLW Y R + +P T + FY+ +DF F+ +G+ F+YPPYA+G FSEGE LT
Sbjct: 241 LLWKYYVQMRSTKVVEQPTTFISESDFYIAEDFLFTDDGIKFIYPPYALGPFSEGEISLT 300
Query: 276 IYWWQLKENDLINPQFSALAK 296
+ W ++ N L+N + K
Sbjct: 301 VPWNEV--NSLLNLAYQRTPK 319
>gi|46156749|ref|ZP_00132171.2| COG0187: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase
IV), B subunit [Haemophilus somnus 2336]
Length = 252
Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 82/240 (34%), Positives = 143/240 (59%), Gaps = 13/240 (5%)
Query: 60 TIRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFT 119
T++V+ V+F++ +T+ + +D YT ++ +++V + +TG WL LLL
Sbjct: 16 TLQVKKNVIFDQVKTVNY--PHSDEYTTDNAQIEVRGELSETGIKWLDQLLLKHAYTLVG 73
Query: 120 ASGQVKIEN--KQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISY 177
+K + KQ LV+ Q ++ + V+ K++ ++G+S + YLGQR NI TF+
Sbjct: 74 GEDSMKKDTPTKQDLVQKFQQIHDEFVQSAKEDRVLGASFHLTSNYLGQRNNIITFSNDI 133
Query: 178 SGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEP--- 234
Y+GGAHG+ T F NID KK +L+++D++ +Q KLK++LW+ Y + EA
Sbjct: 134 DTYTGGAHGINVTLFQNIDSHKKKILELNDIVKQDQQSKLKEVLWNFYTNLMEEANDDYI 193
Query: 235 --FTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQFS 292
T++D F + + FYF+ G+ FVYPPYA+ +++ G LT YW +++ D+INP+++
Sbjct: 194 GMITKED--FNISEQFYFNNEGINFVYPPYALRAYAYGNVVLTAYWHEIE--DIINPEYN 249
>gi|113461327|ref|YP_719396.1| hypothetical protein HS_1184 [Haemophilus somnus 129PT]
gi|112823370|gb|ABI25459.1| conserved hypothetical protein [Haemophilus somnus 129PT]
Length = 262
Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 82/240 (34%), Positives = 142/240 (59%), Gaps = 13/240 (5%)
Query: 60 TIRVEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFT 119
T++V+ V+F++ +T+ + +D YT ++ +++V + +TG WL LLL
Sbjct: 26 TLQVKKNVIFDQVKTVNY--PHSDEYTTDNAQIEVRGELSETGIKWLDQLLLKHAYTLVG 83
Query: 120 ASGQVKIEN--KQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISY 177
+K + KQ LV+ Q ++ + V+ K++ ++G+S + YLGQR NI TF+
Sbjct: 84 GEDSMKKDTPTKQDLVQKFQQIHDEFVQSAKEDRVLGASFHLTSNYLGQRNNIITFSNDI 143
Query: 178 SGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEP--- 234
Y+GGAHG+ T + NID KK +L+++D+I +Q KLK++LW Y + EA
Sbjct: 144 DTYTGGAHGINVTLYQNIDSHKKKILEVNDIIQQDQQTKLKEVLWSFYTNLMQEANDDYI 203
Query: 235 --FTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQFS 292
T++D F + + FYF+ G+ FVYPPYA+ +++ G LT YW +++ D+INP+++
Sbjct: 204 GMITKED--FNISEQFYFNNEGINFVYPPYALRAYAYGNVVLTAYWHEIE--DIINPEYN 259
>gi|52425386|ref|YP_088523.1| hypothetical protein MS1331 [Mannheimia succiniciproducens MBEL55E]
gi|52307438|gb|AAU37938.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 308
Score = 142 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 90/305 (29%), Positives = 159/305 (52%), Gaps = 17/305 (5%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
M K L+ L++ ML+AC++++ L+ Q+Q Q ++QL +++ ++ T
Sbjct: 1 MNKALLPVLVSSIFMLSACNEEKNIELAAQLQHYQQQVDQLKTELENANNKLTQTQNELT 60
Query: 61 IRVEPEVLFEKSETIKFDKKSADSYTPE----SGEVKVNVKTLKTGEDWLTDLLLNELIR 116
+ + + +E F + S+T SG + + T+KT WL LL+++ I
Sbjct: 61 AQQQAFPALKTTEEKIFTRNEEISFTENRPTGSGIINYYIDTVKTSIPWLDKLLISQAID 120
Query: 117 ----------QFTASGQVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQ 166
+ T + + K L E L+ Y + + N++ G YLGQ
Sbjct: 121 ILNQDAEPKDKLTINDSDSDQQKAVLTEKLENNYQRDLDILTANKLPGIDYIIETSYLGQ 180
Query: 167 RENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYR 226
REN+ +F++ Y GG + T++LNID ++++ + DVI P + ++LK+LLW++Y
Sbjct: 181 RENLVSFSLFRHAYYGGERSSFYTRYLNIDSETQSIIRLSDVIPPVKQKELKELLWNSYA 240
Query: 227 DSNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDL 286
++ +P+ +K FY+ KDFYF+ +G+ FVY P +I FS GE L +YW ++ N L
Sbjct: 241 NALGNNKPYIKKQ-NFYIAKDFYFTPDGMNFVYSPSSIAPFSAGEITLQLYWNEI--NTL 297
Query: 287 INPQF 291
IN Q+
Sbjct: 298 INGQY 302
>gi|145629586|ref|ZP_01785383.1| hypothetical protein CGSHi22121_01027 [Haemophilus influenzae
22.1-21]
gi|144978097|gb|EDJ87870.1| hypothetical protein CGSHi22121_01027 [Haemophilus influenzae
22.1-21]
Length = 227
Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 130/229 (56%), Gaps = 8/229 (3%)
Query: 63 VEPEVLFEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFTASG 122
+E + +F +SE IK KS + Y PE +++ ++ T+KT DWL DLL +L T +
Sbjct: 1 MENDEIFNQSEIIK-HPKSKEDYQPEETKIEYSISTIKTNIDWLNDLLWKKL----TENE 55
Query: 123 QVKIENKQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISYSGYSG 182
+ K +++Q V Q + + KE K+ G S ++GQ+E +ATF IS+ Y G
Sbjct: 56 ETKTISREQFVARYQTAFEEDKKEAKETPSFGISHSIWTNFIGQKEKLATFAISFYDYEG 115
Query: 183 GAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDGGF 242
GAHG+ ++ IDL + +L ++D+ N + K+K LLW+ Y +SN E EP + D F
Sbjct: 116 GAHGIEGNRYFTIDLTTRHILTLNDLFNEKDLPKVKTLLWEQYNNSNKEYEPIIEAD-SF 174
Query: 243 YVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQF 291
+ + Y GV F+Y Y I ++ GE++L +++ QL+E L P+F
Sbjct: 175 NLSNNIYLDSKGVHFIYDVYEIAPYAAGEQDLMLHFGQLEE--LFKPEF 221
>gi|152978765|ref|YP_001344394.1| hypothetical protein Asuc_1093 [Actinobacillus succinogenes 130Z]
gi|150840488|gb|ABR74459.1| conserved hypothetical protein [Actinobacillus succinogenes 130Z]
Length = 307
Score = 124 bits (310), Expect = 9e-27, Method: Composition-based stats.
Identities = 91/293 (31%), Positives = 149/293 (50%), Gaps = 24/293 (8%)
Query: 1 MKKLLIATLIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQT 60
MKK L A L+ +++L+ C D+E +Q ++ + Q +++ + ++
Sbjct: 11 MKKTLSAILVLSAVVLSGCHDEETQIKLQQAEQLKTDLAQAQDELTKVRSEI------PA 64
Query: 61 IRVEPEVLFEKSETIK-FDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQF- 118
+ V+P +F +SE K D K D T + VKV + + TG WL +L+ N++ +
Sbjct: 65 LWVKPLEIFNRSEEFKRMDPKPQDFVTESTASVKVIL--VDTGIQWLNELIYNKIATDYF 122
Query: 119 ---TASGQVKIENKQQLVEWLQALYTDSVKEVKDNEMI--GSSTEFS--VKYLGQRENIA 171
+ + KIE Q LQA++ + + + + ++S ++Y+GQR+NI
Sbjct: 123 NTANHADKQKIEEIQDPKARLQAIFARQFESARKSAETFENRANDYSQIMRYIGQRQNIV 182
Query: 172 TFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSN-- 229
TF GGAH M T ++NID KK ++++ E K+KD LW AY+ N
Sbjct: 183 TFEQVTFVDGGGAHPMGWTNYINIDTDKKTVINLTSAFGNENLAKVKDALWGAYKLYNAK 242
Query: 230 ----NEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYW 278
NE + F K+ F V DF+F G+TF Y PYAIGS++EGE +L + W
Sbjct: 243 NGIHNETDYFVSKEE-FEVSADFHFGTQGITFSYTPYAIGSYAEGEIQLLLPW 294
>gi|15602847|ref|NP_245919.1| hypothetical protein PM0982 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721308|gb|AAK03066.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 261
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 72/196 (36%), Positives = 114/196 (58%), Gaps = 14/196 (7%)
Query: 100 KTGEDWLTDLLLNELIRQFTASGQVKIENKQQLVEWL-QALYTDSVKEVKDNEMIGSSTE 158
KT DWL L N T S ++ ++ +Q +E L Q + D + E++ N+ S E
Sbjct: 74 KTNVDWLNTFLDN-----LTLSILIETKSSEQGIEQLVQKWFNDVLPELELNQSWDYSRE 128
Query: 159 FSVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDV-INPEQHQKL 217
+ ++GQRE +ATF++ S Y+GGAHGMY TQFLNIDL K + +DD+ ++ ++ +L
Sbjct: 129 --IHFIGQREQLATFSVITSYYTGGAHGMYDTQFLNIDLTNKQIYTLDDILVSSDKRYQL 186
Query: 218 KDLLWDA--YRDSNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELT 275
+LL +A R F+ D + +F F+ NG+TF YP Y +GS+++GE +L
Sbjct: 187 IELLREANLARLKTLGISDFSMHD-ELELTDNFVFTINGLTFRYPVYTLGSYADGEIDLV 245
Query: 276 IYWWQLKENDLINPQF 291
+ + QLK D+I P+
Sbjct: 246 LPYRQLK--DIIKPEL 259
>gi|126642759|ref|YP_001085743.1| hypothetical protein A1S_2728 [Acinetobacter baumannii ATCC 17978]
gi|126388643|gb|ABO13141.1| hypothetical protein A1S_2728 [Acinetobacter baumannii ATCC 17978]
Length = 249
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 75/284 (26%), Positives = 132/284 (46%), Gaps = 45/284 (15%)
Query: 9 LIAGSLMLTACDDKEKTALSEQMQKQAQTIEQLNEQVKTLEKQVLDLAENQTIRVEPEVL 68
++A + ++ C K TA EQ+ A EQ +V ++ +V+ + + P+V
Sbjct: 1 MLAAMVAVSGCQPKS-TAKDEQLASSASVKEQKQAEVPVIQAKVVPVKLPK-----PKVC 54
Query: 69 FEKSETIKFDKKSADSYTPESGEVKVNVKTLKTGEDWLTDLLLNELIRQFTASGQVKIEN 128
E G + + +T++T + W+ D N ++K +
Sbjct: 55 LE------------------DGCTEYDFQTVQTNQKWINDYFTN----------RIKKAD 86
Query: 129 KQQLVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTI-SYSGYSGGAHGM 187
A D EV + E S + V+YLGQ N+ATF +YS +G AHGM
Sbjct: 87 PNAF-----ANLADKPVEVPEGEPSSSQSAIYVRYLGQNYNLATFAFQTYSYSAGAAHGM 141
Query: 188 YSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDGGFYVPKD 247
+F+N DL K + ++++I P+ ++L D L+DA + E +K + +
Sbjct: 142 SHQEFVNFDLLNKKHITVEELIKPDVEKQLVDALFDANTNWLQEHNISREK---LQLSDN 198
Query: 248 FYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQF 291
FY+ NG+ FVYP Y + S++EG ELT+ +++ + I P++
Sbjct: 199 FYYGANGIVFVYPIYELASYAEGMSELTLPYFEAAK--YIKPEY 240
>gi|148653842|ref|YP_001280935.1| hypothetical protein PsycPRwf_2045 [Psychrobacter sp. PRwf-1]
gi|148572926|gb|ABQ94985.1| hypothetical protein PsycPRwf_2045 [Psychrobacter sp. PRwf-1]
Length = 274
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 53/214 (24%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Query: 93 KVNVKTLKTGEDWLTDLLLNELIRQFTASGQVKIENKQ-----------QLVEWLQALYT 141
++++K + + W+ + L+N I Q Q + E Q ++ + L
Sbjct: 62 QIDIKYAASSQGWI-NTLINARINQIVPGSQSETERTQPPSNAKVLTQAEVKKRLDGFAK 120
Query: 142 DSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKA 201
++++ + + S E S YLG + F I+ Y GGAHG+ +++++ D + K
Sbjct: 121 SQLEDIPEGSSLNYSFEASPSYLGHMGEVELFEINSYIYLGGAHGLGASEYMMFDTSSKR 180
Query: 202 LLDIDDVINPEQHQKLKDLLWDAY----RDSNNEAEPFTQKDGGFYVPKDFYFSRNGVTF 257
+ +DD++ Q K K L ++ Y R NNE + + +K F + + + GV
Sbjct: 181 HIQLDDMLLAGQKSKFKALAYEQYKAWVRKDNNELKAY-EKMWPFTLTDNALLTDKGVVL 239
Query: 258 VYPPYAIGSFSEGEKELTIYWWQLKENDLINPQF 291
Y PY I +++ G ELT+ + QLK ++ P++
Sbjct: 240 RYQPYEIAAYAYGMPELTVPYNQLK--GILKPKY 271
>gi|50085963|ref|YP_047473.1| hypothetical protein ACIAD2936 [Acinetobacter sp. ADP1]
gi|49531939|emb|CAG69651.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
Length = 260
Score = 75.5 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 21/205 (10%)
Query: 88 ESGEVKVNVKTLKTGEDWLTDLLLNELIRQFTASGQVKIENKQQLVEWLQALYTDSVKEV 147
E G N +T+KT + W+ N I++ + + ++Q VK
Sbjct: 66 EDGCTTYNFQTVKTNQLWINAYFDNR-IKKADPNAFANLSDQQ-------------VKLP 111
Query: 148 KDNEMIGSSTEFSVKYLGQRENIATFTI-SYSGYSGGAHGMYSTQFLNIDLAKKALLDID 206
+ + G S + VKYLGQ N+A+F + +Y+ +G AHGMY +++ DL K + +
Sbjct: 112 EGMPIDGQSMIY-VKYLGQNYNLASFELYTYTYSAGAAHGMYHQEYVIFDLTNKKHITVA 170
Query: 207 DVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIGS 266
D++ +KD L+ ++ S EA T+ + +FY+ G+ FVYP Y + S
Sbjct: 171 DLLKEGSDATVKDRLY-SFNQSWLEAHNITKDK--LQLSDNFYYGNEGIVFVYPLYELAS 227
Query: 267 FSEGEKELTIYWWQLKENDLINPQF 291
++EG ELT+ + Q D+I P++
Sbjct: 228 YAEGLTELTLPYDQ--ATDVIKPEY 250
>gi|153806707|ref|ZP_01959375.1| hypothetical protein BACCAC_00978 [Bacteroides caccae ATCC 43185]
gi|149131384|gb|EDM22590.1| hypothetical protein BACCAC_00978 [Bacteroides caccae ATCC 43185]
Length = 283
Score = 74.7 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 16/154 (10%)
Query: 136 LQALYTDSVKEVKDNEMIGSSTEFSVKYLG-------QRENIATFTISYSGYSGGAHGMY 188
L+ +YT+ K+ +D IG+ + Y G +++ + I Y+ Y+GGAHG+Y
Sbjct: 113 LEPMYTEDEKDKEDESSIGAWYSY---YKGIESHVQLYEKDLLVYRIDYNEYTGGAHGIY 169
Query: 189 STQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDGGFYVPKD- 247
T +LN+DL L +DD+ + + L DL+W+ N +D G+ D
Sbjct: 170 MTTYLNMDLTLMRPLRLDDIFVGDYKEPLTDLIWNQLMADNKVTTHEALEDMGYASTGDI 229
Query: 248 -----FYFSRNGVTFVYPPYAIGSFSEGEKELTI 276
FY SR GVTF Y Y I +S G ++TI
Sbjct: 230 TPTENFYLSREGVTFYYNVYDITPYSMGPVKVTI 263
>gi|156860780|gb|EDO54211.1| hypothetical protein BACUNI_02219 [Bacteroides uniformis ATCC 8492]
Length = 288
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 49/176 (27%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 136 LQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIA-------TFTISYSGYSGGAHGMY 188
L+ +Y ++ +D E IG+ + Y G ++ T+ I Y+ Y+GGAHG+Y
Sbjct: 113 LEPMYKKDEQDKEDEESIGAWYSY---YKGIESHVQLCNTLVLTYRIDYNEYTGGAHGIY 169
Query: 189 STQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDGGFYVPKD- 247
+ FLN+DL + + +DD+ + + L DLLW NN + +D G+ D
Sbjct: 170 MSTFLNLDLKTLSPIRLDDLFEGDYKEALTDLLWKQLMADNNVSTRQELEDMGYATTGDL 229
Query: 248 -----FYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQFSALAKSV 298
FY G+TF Y Y I + G ++T+ + + L+N +F L+ ++
Sbjct: 230 EPIENFYLDPTGITFYYNVYEIAPYVMGATKITLSYEDIAP--LMNGKFIVLSSAI 283
>gi|156108848|gb|EDO10593.1| hypothetical protein BACOVA_04041 [Bacteroides ovatus ATCC 8483]
Length = 297
Score = 69.3 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 136 LQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIA-------TFTISYSGYSGGAHGMY 188
L+ +YT+ K+ +D IG+ + Y G ++ + I Y+ Y+GGAHG+Y
Sbjct: 127 LEPMYTEDEKDKEDESSIGAWYSY---YKGIESHVQLYDKDLLVYRIDYNEYTGGAHGIY 183
Query: 189 STQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKDGGFYVPKD- 247
+LN+DL L +DD+ + L DL+W+ N +D G+ D
Sbjct: 184 MATYLNMDLTLMRPLRLDDIFVGDYKDALTDLIWNQLMADNKVTTHEALEDMGYASTGDI 243
Query: 248 -----FYFSRNGVTFVYPPYAIGSFSEGEKELTI 276
FY S+ G+TF Y Y I +S G ++TI
Sbjct: 244 APTENFYLSKEGITFYYNVYDITPYSMGPVKVTI 277
>gi|29346554|ref|NP_810057.1| hypothetical protein BT_1144 [Bacteroides thetaiotaomicron
VPI-5482]
gi|29338450|gb|AAO76251.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
VPI-5482]
Length = 283
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 168 ENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRD 227
+++ + + Y+ Y+GGAHGMY + FLN+DL L +DD+ + + L DL+W+
Sbjct: 149 KDLLVYRVDYNEYTGGAHGMYMSTFLNMDLTLMRPLRLDDIFVGDFQEALTDLIWNQLMA 208
Query: 228 SNNEAEPFTQKDGGFYVPKD------FYFSRNGVTFVYPPYAIGSFSEGEKELTI 276
N +D G+ D FY S+ G+TF Y Y I +S G ++TI
Sbjct: 209 DNKVTTHEALEDMGYASTGDIAPTENFYLSKEGITFYYNIYDITPYSMGPVKVTI 263
>gi|53713317|ref|YP_099309.1| hypothetical protein BF2028 [Bacteroides fragilis YCH46]
gi|60681566|ref|YP_211710.1| hypothetical protein BF2082 [Bacteroides fragilis NCTC 9343]
gi|52216182|dbj|BAD48775.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
gi|60493000|emb|CAH07779.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
Length = 284
Score = 68.9 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 168 ENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRD 227
+N+ + I+Y+ Y+GGAHG+Y T FLN+DL L +DD+ + + L DLLW+
Sbjct: 149 KNLLVYRINYNEYTGGAHGIYMTTFLNMDLINLRPLKLDDIFTGDYKEALTDLLWNQLMA 208
Query: 228 SNNEAEPFTQKDGGFYVPKD------FYFSRNGVTFVYPPYAIGSFSEGEKELTI 276
+D G+ D FY ++G+TF Y Y I ++ G E+ I
Sbjct: 209 DKKVTTHEALEDMGYGSTGDIAPTENFYLDKDGITFYYNVYDITPYAMGPVEIKI 263
>gi|93005253|ref|YP_579690.1| hypothetical protein Pcryo_0423 [Psychrobacter cryohalolentis K5]
gi|92392931|gb|ABE74206.1| hypothetical protein Pcryo_0423 [Psychrobacter cryohalolentis K5]
Length = 284
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 55/235 (23%), Positives = 106/235 (45%), Gaps = 13/235 (5%)
Query: 68 LFEKSETIKFD--KKSADSYTPESGEVKVNVKTLKTGEDWLTDLL---LNELIRQFTASG 122
LF +E + + KK ++ T ++ VK LKT W+ D+ +N L+ S
Sbjct: 49 LFSSTEYLDYQLPKKLQETCTARDNCPEIEVKYLKTNHKWINDITNQRINTLVVNSKPSE 108
Query: 123 QVKIENKQQ---LVEWLQALYTDSVKEVKDNEMIGSSTEFSVKYLGQRENIATFTISYSG 179
I K + L + E+ + S + +Y+G + TF IS
Sbjct: 109 SAPITTKATPAAVKNALDGFAASQLNELPSDSAFAYSLTVTPEYVGHINDFETFEISSYV 168
Query: 180 YSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRD---SNNEAEPFT 236
++GGAHGM +++L D K + + D++ + + L+++AY+D + ++
Sbjct: 169 FTGGAHGMPYSEYLVFDQKTKKQIKLADMLQSGKKPQFNALVYNAYKDWVKTVDKDVKNY 228
Query: 237 QKDGGFYVPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLKENDLINPQF 291
+K+ F + + + G+ Y YAI ++ G L+I + +L + +I P+F
Sbjct: 229 EKNWPFTLSDNVTLTDKGIDIRYQHYAIAPYAYGMPVLSIPYNKL--SGIIQPRF 281
>gi|154688014|ref|YP_001423175.1| hypothetical protein RBAM_036150 [Bacillus amyloliquefaciens FZB42]
gi|154353865|gb|ABS75944.1| hypothetical protein RBAM_036150 [Bacillus amyloliquefaciens FZB42]
Length = 224
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/168 (29%), Positives = 86/168 (51%), Gaps = 10/168 (5%)
Query: 117 QFTASGQVKIENK--QQLVEWLQALYTDSVKEVKDNEMIGS----STEFSVKYLGQRENI 170
+ T +G E K Q +++ Y + VK KD E G T+F VKY Q +
Sbjct: 53 EVTNTGNASFEKKINQDFKRYIEQSYQEYVKNKKDGEKQGYKAEYQTDFKVKY-NQDGKL 111
Query: 171 ATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPE-QHQKLKDLLWDAYRDSN 229
+ T YS Y+GGAHG+ S Q N DLA K + +D+V+N + + K +D L+ + +
Sbjct: 112 SIQTEDYS-YTGGAHGLTSVQTFNYDLAAKKRVTLDNVLNTKTKANKTRDYLYGYIKKHD 170
Query: 230 NEAEPFTQKDGGFY-VPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTI 276
+ + +K + F+F++NG+ V+ Y +G ++ G +++ +
Sbjct: 171 DLFDQDVKKQEIILNNERPFFFTKNGIAVVFGQYDLGPYAAGIRDVFV 218
>gi|124010108|ref|ZP_01694768.1| hypothetical protein M23134_03667 [Microscilla marina ATCC 23134]
gi|123983876|gb|EAY24281.1| hypothetical protein M23134_03667 [Microscilla marina ATCC 23134]
Length = 375
Score = 60.5 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 168 ENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYR- 226
+NI T + +G+SGGAHG Y++ F + DL ++ + DV P +K L+ R
Sbjct: 242 KNILTLEYNLNGFSGGAHGYYNSSFTSFDLRTGQIIKMKDVFIPGFEGPIKQLIARQMRK 301
Query: 227 DSNNEAEPFTQKDGGFY----VPKDFYFSRNGVTFVYPPYAIGSFSEGEKELTIYWWQLK 282
D +++ K G F +PK+FYF +GV F Y Y I + G + + + + +L+
Sbjct: 302 DYGLKSDAPLTKLGLFKNECPLPKNFYFRPDGVAFFYNVYEIAPYVAGARTVVVPYKKLR 361
>gi|115422916|emb|CAJ49444.1| putative lipoprotein [Bordetella avium 197N]
Length = 271
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 72/146 (49%), Gaps = 25/146 (17%)
Query: 160 SVKYLGQRE-NIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINP------- 211
SVK +GQ ++ T Y ++G AHG+ +T FLN LA LL +DD++ P
Sbjct: 133 SVKNVGQGVVSVELHTGQY--FTGAAHGIPATVFLNWQLAGGHLLQLDDLLIPGRRVQYV 190
Query: 212 ----EQHQKLKDLLWDAYRD--SNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIG 265
+ HQ+ DA RD + N PF D + FSR+G+ Y Y+I
Sbjct: 191 EALRQAHQQWLASNEDAKRDPVAYNRIWPFQSTD-------NVAFSRDGLVAKYDAYSIA 243
Query: 266 SFSEGEKELTIYWWQLKENDLINPQF 291
+S+GE EL + W L+ +I P++
Sbjct: 244 PYSQGEPELLLPWSALQ--GIIKPEY 267
>gi|154148317|ref|YP_001406963.1| hypothetical protein CHAB381_1420 [Campylobacter hominis ATCC
BAA-381]
gi|153804326|gb|ABS51333.1| conserved hypothetical protein [Campylobacter hominis ATCC BAA-381]
Length = 309
Score = 58.9 bits (141), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 180 YSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQKLKDLLWDAYRDSNNEAEPFTQKD 239
Y+GGAHGM + L K + IDD++ +KL+ ++WD +D F +
Sbjct: 201 YTGGAHGMGVESYYV--LIGKKQISIDDLLKNSGDEKLRSMIWDKIKDV-----AFEEVK 253
Query: 240 GGFYVPKDFYFSRNGVTFVYPPYAIGSFSEG 270
F + +FY S NGVTFVY PY + +++ G
Sbjct: 254 NEFKISDNFYISPNGVTFVYAPYEVAAYAYG 284
>gi|110832900|ref|YP_691759.1| hypothetical protein ABO_0039 [Alcanivorax borkumensis SK2]
gi|110646011|emb|CAL15487.1| hypothetical protein predicted by Glimmer/Critica [Alcanivorax
borkumensis SK2]
Length = 271
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 30/191 (15%)
Query: 105 WLT---DLLLNELIRQFTASGQVKIENKQQLVEWLQALYTDSVKEVKDNEMI---GSSTE 158
WLT LN+ I Q A+ + E+ ++ L +++ D M G
Sbjct: 78 WLTFENQAELNDAITQHLAAMLIHNEDNPNHDVRIEDLADAFLQDASDMAMASRQGWELT 137
Query: 159 FSVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINP------- 211
+VK G+R ++ T ++ Y+GGAHG+ S Q+ + DLAK+ + ++D++ P
Sbjct: 138 ATVKKQGRRGDVITLSMETYEYTGGAHGVPSVQYFHWDLAKQQSVKLNDMLVPGQQAAFW 197
Query: 212 ----EQHQKL--KDLLWDAYRDSNNEAEPFTQKDGGFYVPKDFYFSRNGVTFVYPPYAIG 265
EQH K+ L A+RDS PF + D + +F+ G+ Y Y I
Sbjct: 198 EKAREQHTAWLNKENLDQAFRDS----WPFDKTD-------NVFFTDKGLVLQYNVYHIA 246
Query: 266 SFSEGEKELTI 276
++ G+ LTI
Sbjct: 247 PYAMGQPTLTI 257
>gi|50084931|ref|YP_046441.1| hypothetical protein ACIAD1781 [Acinetobacter sp. ADP1]
gi|49530907|emb|CAG68619.1| conserved hypothetical protein [Acinetobacter sp. ADP1]
Length = 271
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 26/199 (13%)
Query: 99 LKTGEDWLTDLLLNELIRQFTASGQVKIENKQQLVEWLQALYTDSVKEVKDNEMIGS--- 155
LK+ DW+ D ++N+ I + A V +Q K++ ++ GS
Sbjct: 83 LKSNIDWI-DRIINKEIHDYYADVFVVPSEEQ--------------KQLNQTKVEGSNHW 127
Query: 156 STEFSVKYLGQRENIATFTISYSGYSGGAHGMYSTQFLNIDLAKKALLDIDDVINPEQHQ 215
S ++ GQ + S Y+GGAHG+ + DL K + + D++ +
Sbjct: 128 SNSVVYRFNGQFGRYVQISKVASEYTGGAHGISFFEDYVFDLKSKKRVTLHDIVITGKTD 187
Query: 216 KLKDLLWDAYRD--SNNEAEPFTQKDGGFYVPKDFYFSRN-GVTFVYPPYAIGSFSEGEK 272
KLK+ LW Y ++N+ +PF K+ F + +FY ++N GVTF Y Y + ++ G
Sbjct: 188 KLKNALWKQYEYWCNDNQMQPFIAKE-DFNISNNFYINQNGGVTFEYQLYELAPYAAGPV 246
Query: 273 ELTIYWWQLKENDLINPQF 291
L + + DLI F
Sbjct: 247 SLELN----ETKDLIKSDF 261
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.313 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,067,992,751
Number of Sequences: 5470121
Number of extensions: 44741532
Number of successful extensions: 143236
Number of sequences better than 1.0e-05: 40
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 143149
Number of HSP's gapped (non-prelim): 43
length of query: 300
length of database: 1,894,087,724
effective HSP length: 132
effective length of query: 168
effective length of database: 1,172,031,752
effective search space: 196901334336
effective search space used: 196901334336
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)