BLASTP 2.2.4 [Aug-26-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SAG1967
(195 letters)
Database: nr
1,487,057 sequences; 479,114,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|22538103|ref|NP_688954.1| hypothetical protein [Streptococcus... 372 e-102
gi|23023698|ref|ZP_00062930.1| hypothetical protein [Leuconostoc... 134 6e-31
gi|21401575|ref|NP_657560.1| Thymidylate_kin, Thymidylate kinase... 91 1e-17
gi|30263602|ref|NP_845979.1| conserved hypothetical protein [Bac... 83 2e-15
gi|30021755|ref|NP_833386.1| hypothetical ATP-binding protein [B... 65 8e-10
>gi|22538103|ref|NP_688954.1| hypothetical protein [Streptococcus
agalactiae 2603V/R]
gi|25011992|ref|NP_736387.1| Unknown [Streptococcus agalactiae
NEM316]
gi|22535009|gb|AAN00827.1|AE014280_19 hypothetical protein
[Streptococcus agalactiae 2603V/R]
gi|24413535|emb|CAD47613.1| Unknown [Streptococcus agalactiae
NEM316]
Length = 195
Score = 372 bits (956), Expect = e-102
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MIIAIQGGMAVGKTTALKIIENVYPKIAISFEDISPVVDKINKHQLDNNKLDDYCEIQQL 60
MIIAIQGGMAVGKTTALKIIENVYPKIAISFEDISPVVDKINKHQLDNNKLDDYCEIQQL
Sbjct: 1 MIIAIQGGMAVGKTTALKIIENVYPKIAISFEDISPVVDKINKHQLDNNKLDDYCEIQQL 60
Query: 61 FIQHERDRYELVRDNEIVLMDYGAEEIAFYTQYFPKVAGYSWTLPSNLLLEVNRLKECFA 120
FIQHERDRYELVRDNEIVLMDYGAEEIAFYTQYFPKVAGYSWTLPSNLLLEVNRLKECFA
Sbjct: 61 FIQHERDRYELVRDNEIVLMDYGAEEIAFYTQYFPKVAGYSWTLPSNLLLEVNRLKECFA 120
Query: 121 DYIIFLDADETVLYQRQKNDFNRQRHFFKWYTHHLLPAKKHYLDTFSNVIHINTNHLNAE 180
DYIIFLDADETVLYQRQKNDFNRQRHFFKWYTHHLLPAKKHYLDTFSNVIHINTNHLNAE
Sbjct: 121 DYIIFLDADETVLYQRQKNDFNRQRHFFKWYTHHLLPAKKHYLDTFSNVIHINTNHLNAE 180
Query: 181 EVAEKIIDIIRKLTL 195
EVAEKIIDIIRKLTL
Sbjct: 181 EVAEKIIDIIRKLTL 195
>gi|23023698|ref|ZP_00062930.1| hypothetical protein [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 200
Score = 134 bits (338), Expect = 6e-31
Identities = 77/188 (40%), Positives = 109/188 (57%)
Query: 3 IAIQGGMAVGKTTALKIIENVYPKIAISFEDISPVVDKINKHQLDNNKLDDYCEIQQLFI 62
+++QG MAVGKTTAL++IE I IS E VVD+I +LD N+ +DY EIQ+LFI
Sbjct: 7 LSLQGSMAVGKTTALRLIEKHDSTIHISHEKNKQVVDEIRNRKLDKNRYNDYIEIQRLFI 66
Query: 63 QHERDRYELVRDNEIVLMDYGAEEIAFYTQYFPKVAGYSWTLPSNLLLEVNRLKECFADY 122
+E RY+L +MD+GAEEI FYT +PK G W + L E+ LK CF
Sbjct: 67 LNEVKRYQLASQYNCSIMDFGAEEIEFYTLNYPKAIGIDWEVAKPLETELQLLKRCFPKR 126
Query: 123 IIFLDADETVLYQRQKNDFNRQRHFFKWYTHHLLPAKKHYLDTFSNVIHINTNHLNAEEV 182
I++L+A L +R+K D +R R FF +Y LLP K+ + V I + + EV
Sbjct: 127 ILYLNAANETLVERKKRDISRNREFFDFYVQKLLPLKREWFFNQDVVDVIEVDSKSEREV 186
Query: 183 AEKIIDII 190
++ + + I
Sbjct: 187 SDSVYEWI 194
>gi|21401575|ref|NP_657560.1| Thymidylate_kin, Thymidylate kinase
[Bacillus anthracis A2012]
Length = 176
Score = 90.9 bits (224), Expect = 1e-17
Identities = 55/179 (30%), Positives = 95/179 (52%), Gaps = 21/179 (11%)
Query: 2 IIAIQGGMAVGKTTALKIIENVYPKIAISFEDISPVVDKINKHQLDNNKLDDYCEIQQLF 61
+I++QG MA GKTT K +E +++ +E+ P+V+K + LD N + + Q++F
Sbjct: 4 VISLQGPMASGKTTLAKKLE--LHGLSVIYENPYPIVEKRKQLNLDMNSKEGFIANQKMF 61
Query: 62 IQHERDRYELVRDNEIVLMDYGAEEIAFYTQYFPKVAGYSWTLPSNLLLEVNRLKECFAD 121
I+ + ++ + +V+ D G E+I FYT ++P G W + + L E+ +L+EC +D
Sbjct: 62 IEAKIKEFQNAK-GSVVIFDRGPEDIEFYTIFYPTTIGKEWDIETELKDELYKLRECRSD 120
Query: 122 YIIFLDADETVLYQRQKNDFNRQRHFFKWYTHHLLPAKKHYLDTFSNVIHINTNHLNAE 180
I +LD E+ LY R+ ND R R TF +++TN L+A+
Sbjct: 121 AIFYLDVSESNLYDRKNNDRTRNR------------------STFEEQFYVDTNRLSAD 161
>gi|30263602|ref|NP_845979.1| conserved hypothetical protein
[Bacillus anthracis str. Ames]
gi|30258237|gb|AAP27465.1| conserved hypothetical protein [Bacillus
anthracis str. Ames]
Length = 166
Score = 83.2 bits (204), Expect = 2e-15
Identities = 52/172 (30%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 9 MAVGKTTALKIIENVYPKIAISFEDISPVVDKINKHQLDNNKLDDYCEIQQLFIQHERDR 68
MA GKTT K +E +++ +E+ P+V+K + LD N + + Q++FI+ +
Sbjct: 1 MASGKTTLAKKLE--LHGLSVIYENPYPIVEKRKQLNLDMNSKEGFIANQKMFIEAKIKE 58
Query: 69 YELVRDNEIVLMDYGAEEIAFYTQYFPKVAGYSWTLPSNLLLEVNRLKECFADYIIFLDA 128
++ + +V+ D G E+I FYT ++P G W + + L E+ +L+EC +D I +LD
Sbjct: 59 FQNAK-GSVVIFDRGPEDIEFYTIFYPTTIGKEWDIETELKDELYKLRECRSDAIFYLDV 117
Query: 129 DETVLYQRQKNDFNRQRHFFKWYTHHLLPAKKHYLDTFSNVIHINTNHLNAE 180
E+ LY R+ ND R R TF +++TN L+A+
Sbjct: 118 SESNLYDRKNNDRTRNR------------------STFEEQFYVDTNRLSAD 151
>gi|30021755|ref|NP_833386.1| hypothetical ATP-binding protein
[Bacillus cereus ATCC 14579]
gi|29897310|gb|AAP10587.1| hypothetical ATP-binding protein
[Bacillus cereus ATCC 14579]
Length = 137
Score = 64.7 bits (156), Expect = 8e-10
Identities = 38/135 (28%), Positives = 76/135 (56%), Gaps = 3/135 (2%)
Query: 58 QQLFIQHERDRYELVRDNEIVLMDYGAEEIAFYTQYFPKVAGYSWTLPSNLLLEVNRLKE 117
Q++F++ + ++ V+D+ +V+ D G E+I F+T ++P G W + + L E+ +L+E
Sbjct: 3 QKMFMEAKIKEFQNVKDS-VVIFDRGPEDIEFFTLFYPTSIGEEWDIETELKDELYKLRE 61
Query: 118 CFADYIIFLDADETVLYQRQKNDFNRQRHFFKWYTHHLLPAKKHYLDTFSNVIHINTNHL 177
C +D I +LD + +Y R+ ND R R F+ L +K + F V +++TN L
Sbjct: 62 CRSDVIFYLDVTKKNVYDRKNNDRTRNRSTFE-EQFKLAETEKDWYKQFP-VTYVDTNRL 119
Query: 178 NAEEVAEKIIDIIRK 192
+++ +D +++
Sbjct: 120 TVDDLEVYFMDWLKE 134
Database: nr
Posted date: Aug 11, 2003 9:58 AM
Number of letters in database: 479,114,161
Number of sequences in database: 1,487,057
Lambda K H
0.323 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 188,785,664
Number of Sequences: 1487057
Number of extensions: 8095811
Number of successful extensions: 22944
Number of sequences better than 1.0e-04: 5
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22936
Number of HSP's gapped (non-prelim): 5
length of query: 195
length of database: 479,114,161
effective HSP length: 117
effective length of query: 78
effective length of database: 305,128,492
effective search space: 23800022376
effective search space used: 23800022376
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)