BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PG0273
(112 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34540580|ref|NP_905059.1| ISPg3, transposase [Porphyromo... 132 8e-30
gi|3323385|gb|AAC26596.1| putative protease [Porphyromonas ... 132 9e-30
gi|34540050|ref|NP_904529.1| ISPg3, transposase [Porphyromo... 131 9e-30
gi|34540105|ref|NP_904584.1| ISPg3, transposase [Porphyromo... 131 1e-29
gi|34540773|ref|NP_905252.1| ISPg3, transposase [Porphyromo... 131 1e-29
gi|61652425|gb|AAX47722.1| transposase [Porphyromonas gingi... 129 7e-29
gi|34540967|ref|NP_905446.1| ISPg3, transposase [Porphyromo... 124 2e-27
gi|150002628|ref|YP_001297372.1| putative transposase [Bact... 72 1e-11
gi|37519719|ref|NP_923096.1| putative transposase [Gloeobac... 69 1e-10
gi|37519724|ref|NP_923101.1| putative transposase [Gloeobac... 67 2e-10
gi|150009840|ref|YP_001304583.1| putative transposase [Para... 67 2e-10
gi|116327476|ref|YP_797196.1| Transposase, ISLbp3 [Leptospi... 66 7e-10
gi|116331910|ref|YP_801628.1| Transposase, ISLbp3 [Leptospi... 66 7e-10
gi|28974007|emb|CAD27751.1| transposase [Mannheimia haemoly... 60 3e-08
gi|118048836|ref|ZP_01517410.1| transposase, IS4 [Chlorofle... 59 6e-08
gi|10441345|gb|AAG16999.1|AF184152_2 transposase [Piscirick... 59 7e-08
gi|89142213|ref|YP_512234.1| transposase [Pasteurella treha... 59 1e-07
gi|148652513|ref|YP_001279606.1| transposase, IS4 family pr... 58 2e-07
gi|119943862|ref|YP_941542.1| transposase, IS4 family prote... 58 2e-07
gi|28611027|emb|CAD32236.1| transposase [Moraxella sp. O245] 58 2e-07
gi|126660432|ref|ZP_01731542.1| putative transposase [Cyano... 57 2e-07
gi|91793283|ref|YP_562934.1| transposase, IS4 [Shewanella d... 57 2e-07
gi|91792448|ref|YP_562099.1| transposase, IS4 [Shewanella d... 57 3e-07
gi|91794331|ref|YP_563982.1| transposase, IS4 [Shewanella d... 56 7e-07
gi|91794747|ref|YP_564398.1| transposase, IS4 [Shewanella d... 56 7e-07
gi|91793808|ref|YP_563459.1| transposase, IS4 [Shewanella d... 56 8e-07
gi|121606978|ref|YP_984307.1| transposase, IS4 family prote... 55 1e-06
gi|30249121|ref|NP_841191.1| putative protease [Nitrosomona... 54 3e-06
gi|37524409|ref|NP_927753.1| Transposase, IS982 family [Pho... 54 3e-06
gi|30249701|ref|NP_841771.1| Transposase IS4 family [Nitros... 53 4e-06
>gi|34540580|ref|NP_905059.1| ISPg3, transposase [Porphyromonas gingivalis W83]
gi|34396893|gb|AAQ65958.1| ISPg3, transposase [Porphyromonas gingivalis W83]
Length = 300
Score = 132 bits (331), Expect = 8e-30, Method: Composition-based stats.
Identities = 63/89 (70%), Positives = 74/89 (83%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
+R NRK K+SDS++MTILILFHLS+ ++ KAFYLQYIT S R +FPHLVSYNRFVELQ+
Sbjct: 34 KRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSR 93
Query: 64 IGFKQIASLNRCCLGQCTGISLTDKAPLR 92
+GFK IA LN CCLGQCTGIS D PL+
Sbjct: 94 VGFKLIAFLNMCCLGQCTGISFIDSTPLK 122
>gi|3323385|gb|AAC26596.1| putative protease [Porphyromonas gingivalis]
Length = 300
Score = 132 bits (331), Expect = 9e-30, Method: Composition-based stats.
Identities = 63/89 (70%), Positives = 74/89 (83%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
+R NRK K+SDS++MTILILFHLS+ ++ KAFYLQYIT S R +FPHLVSYNRFVELQ+
Sbjct: 34 KRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSR 93
Query: 64 IGFKQIASLNRCCLGQCTGISLTDKAPLR 92
+GFK IA LN CCLGQCTGIS D PL+
Sbjct: 94 VGFKLIAFLNMCCLGQCTGISFIDSTPLK 122
>gi|34540050|ref|NP_904529.1| ISPg3, transposase [Porphyromonas gingivalis W83]
gi|34396361|gb|AAQ65428.1| ISPg3, transposase [Porphyromonas gingivalis W83]
Length = 300
Score = 131 bits (330), Expect = 9e-30, Method: Composition-based stats.
Identities = 63/89 (70%), Positives = 74/89 (83%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
+R NRK K+SDS++MTILILFHLS+ ++ KAFYLQYIT S R +FPHLVSYNRFVELQ+
Sbjct: 34 KRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITYSCRSEFPHLVSYNRFVELQSR 93
Query: 64 IGFKQIASLNRCCLGQCTGISLTDKAPLR 92
+GFK IA LN CCLGQCTGIS D PL+
Sbjct: 94 VGFKLIAFLNMCCLGQCTGISFIDSTPLK 122
>gi|34540105|ref|NP_904584.1| ISPg3, transposase [Porphyromonas gingivalis W83]
gi|34396416|gb|AAQ65483.1| ISPg3, transposase [Porphyromonas gingivalis W83]
Length = 300
Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/89 (70%), Positives = 74/89 (83%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
+R NRK K+SDS++MTILILFHLS+ ++ KAFYLQYIT S R +FPHLVSYNRFVELQ+
Sbjct: 34 KRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITYSCRSEFPHLVSYNRFVELQSR 93
Query: 64 IGFKQIASLNRCCLGQCTGISLTDKAPLR 92
+GFK IA LN CCLGQCTGIS D PL+
Sbjct: 94 VGFKLIAFLNMCCLGQCTGISFIDSTPLK 122
>gi|34540773|ref|NP_905252.1| ISPg3, transposase [Porphyromonas gingivalis W83]
gi|34397087|gb|AAQ66151.1| ISPg3, transposase [Porphyromonas gingivalis W83]
Length = 300
Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/89 (70%), Positives = 74/89 (83%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
+R NRK K+SDS++MTILILFHLS+ ++ KAFYLQYIT S R +FPHLVSYNRFVELQ+
Sbjct: 34 KRRNRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSR 93
Query: 64 IGFKQIASLNRCCLGQCTGISLTDKAPLR 92
+GFK IA LN CCLGQCTGIS D PL+
Sbjct: 94 VGFKLIAFLNMCCLGQCTGISFIDSTPLK 122
>gi|61652425|gb|AAX47722.1| transposase [Porphyromonas gingivalis]
Length = 300
Score = 129 bits (323), Expect = 7e-29, Method: Composition-based stats.
Identities = 61/86 (70%), Positives = 72/86 (83%)
Query: 7 NRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGF 66
NRK K+SDS++MTILILFHLS+ ++ KAFYLQYI+ S R +FPHLVSYNRFVELQ+ +GF
Sbjct: 37 NRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYISHSCRSEFPHLVSYNRFVELQSRVGF 96
Query: 67 KQIASLNRCCLGQCTGISLTDKAPLR 92
K IA LN CCLGQCTGIS D PL+
Sbjct: 97 KLIAFLNMCCLGQCTGISFIDSTPLK 122
>gi|34540967|ref|NP_905446.1| ISPg3, transposase [Porphyromonas gingivalis W83]
gi|34397282|gb|AAQ66345.1| ISPg3, transposase [Porphyromonas gingivalis W83]
Length = 300
Score = 124 bits (310), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/86 (70%), Positives = 70/86 (81%)
Query: 7 NRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGF 66
NRK K+SDS++MTILILFHLS+ ++ KAFYLQYIT S R +FPHLVSYNRFVELQ+ G
Sbjct: 37 NRKFKMSDSEVMTILILFHLSRYRDLKAFYLQYITHSCRSEFPHLVSYNRFVELQSRGGG 96
Query: 67 KQIASLNRCCLGQCTGISLTDKAPLR 92
K IA LN CCLGQCTGIS D PL+
Sbjct: 97 KLIAFLNMCCLGQCTGISFIDSTPLK 122
>gi|150002628|ref|YP_001297372.1| putative transposase [Bacteroides vulgatus ATCC 8482]
gi|150002653|ref|YP_001297397.1| putative transposase [Bacteroides vulgatus ATCC 8482]
gi|150002776|ref|YP_001297520.1| putative transposase [Bacteroides vulgatus ATCC 8482]
gi|150004022|ref|YP_001298766.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|150005947|ref|YP_001300691.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|150006000|ref|YP_001300744.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149931052|gb|ABR37750.1| putative transposase [Bacteroides vulgatus ATCC 8482]
gi|149931077|gb|ABR37775.1| putative transposase [Bacteroides vulgatus ATCC 8482]
gi|149931200|gb|ABR37898.1| putative transposase [Bacteroides vulgatus ATCC 8482]
gi|149932446|gb|ABR39144.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149934371|gb|ABR41069.1| transposase [Bacteroides vulgatus ATCC 8482]
gi|149934424|gb|ABR41122.1| transposase [Bacteroides vulgatus ATCC 8482]
Length = 273
Score = 71.6 bits (174), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 51/91 (56%)
Query: 1 MSVRRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVEL 60
M N+ ++SD++IM ILILFH + +K +Y +Y+ + FP VSYNRFVEL
Sbjct: 5 MKTMHRNKPNRMSDAEIMVILILFHSGGFRCFKHYYKEYVCKHLKHLFPRQVSYNRFVEL 64
Query: 61 QNSIGFKQIASLNRCCLGQCTGISLTDKAPL 91
+ + + R LG CTGIS D PL
Sbjct: 65 EKEVLLPMTIFIKRVLLGTCTGISFVDSTPL 95
>gi|37519719|ref|NP_923096.1| putative transposase [Gloeobacter violaceus PCC 7421]
gi|35210710|dbj|BAC88091.1| glr0150 [Gloeobacter violaceus PCC 7421]
Length = 291
Score = 68.6 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 15 SKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGFKQIASLNR 74
S+I+TILI FH S +++KAFY Q + R FP LVSY RFVE S A L R
Sbjct: 43 SEILTILIAFHQSAYRHFKAFYTQMVWGYWRSAFPGLVSYPRFVEWMPSTLLPLSAYL-R 101
Query: 75 CCLGQCTGISLTDKAPL 91
C G+CTGIS D PL
Sbjct: 102 HCFGRCTGISFIDSTPL 118
>gi|37519724|ref|NP_923101.1| putative transposase [Gloeobacter violaceus PCC 7421]
gi|35210715|dbj|BAC88096.1| glr0155 [Gloeobacter violaceus PCC 7421]
Length = 291
Score = 67.4 bits (163), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 15 SKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGFKQIASLNR 74
S+I+TILI FH S +++KAFY + + R FP LVSY RFVE S +++ R
Sbjct: 43 SEILTILIAFHQSAYRHFKAFYTEMVCAYWRSAFPGLVSYPRFVEWMPST-LLPLSTYLR 101
Query: 75 CCLGQCTGISLTDKAPL 91
C G CTGIS D PL
Sbjct: 102 HCFGPCTGISFIDSTPL 118
>gi|150009840|ref|YP_001304583.1| putative transposase [Parabacteroides distasonis ATCC 8503]
gi|149938264|gb|ABR44961.1| putative transposase [Parabacteroides distasonis ATCC 8503]
Length = 301
Score = 67.4 bits (163), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 49/91 (53%)
Query: 1 MSVRRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVEL 60
M N ++SD++IM ILILFH + +K +Y +Y+ + FP VSYNRFVEL
Sbjct: 33 MKTMHRNNPNRMSDAEIMVILILFHSGGFRCFKHYYKEYVCKHLKHLFPRQVSYNRFVEL 92
Query: 61 QNSIGFKQIASLNRCCLGQCTGISLTDKAPL 91
+ + + R LG CTGIS PL
Sbjct: 93 EKEVLLPMTIFIKRVLLGTCTGISFVASTPL 123
>gi|116327476|ref|YP_797196.1| Transposase, ISLbp3 [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116120220|gb|ABJ78263.1| Transposase, ISLbp3 [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
Length = 305
Score = 65.9 bits (159), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 3 VRRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQN 62
VR+ NRK ++S S++ TI++ FHLS + +K +YL I + + +FP VSYNRFVEL
Sbjct: 2 VRKRNRKFQLSLSEVATIVVYFHLSHYREFKNYYLIEIKKNLKSEFPKAVSYNRFVELMP 61
Query: 63 SIGFKQIASLNRCCLGQCTGISLTDKAPLR 92
+ + L+ CL +C+GIS D L+
Sbjct: 62 NALTVIDSFLSNSCLEKCSGISFIDSTILK 91
>gi|116331910|ref|YP_801628.1| Transposase, ISLbp3 [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116125599|gb|ABJ76870.1| Transposase, ISLbp3 [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 305
Score = 65.9 bits (159), Expect = 7e-10, Method: Composition-based stats.
Identities = 37/90 (41%), Positives = 56/90 (62%)
Query: 3 VRRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQN 62
VR+ NRK ++S S++ TI++ FHLS + +K +YL I + + +FP VSYNRFVEL
Sbjct: 2 VRKRNRKFQLSLSEVATIVVYFHLSHYREFKNYYLIEIKKNLKSEFPKAVSYNRFVELMP 61
Query: 63 SIGFKQIASLNRCCLGQCTGISLTDKAPLR 92
+ + L+ CL +C+GIS D L+
Sbjct: 62 NALTVIDSFLSNSCLEKCSGISFIDSTILK 91
>gi|28974007|emb|CAD27751.1| transposase [Mannheimia haemolytica]
Length = 294
Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 8 RKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGFK 67
R KIS +IMTIL+LFH + + +K FY ++ + FP L SY+RF+EL+
Sbjct: 35 RACKISVPEIMTILVLFHQLRYRQFKGFYYHHMLGMMKKDFPDLPSYSRFIELEPRALVP 94
Query: 68 QIASLNRCCLGQCTGISLTDKAPL 91
A L + +G CTGIS D L
Sbjct: 95 LCAYL-KSLMGSCTGISFVDATKL 117
>gi|118048836|ref|ZP_01517410.1| transposase, IS4 [Chloroflexus aggregans DSM 9485]
gi|117994654|gb|EAV08921.1| transposase, IS4 [Chloroflexus aggregans DSM 9485]
Length = 293
Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 45/84 (53%)
Query: 8 RKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGFK 67
R+ +S S++MTILI FH S +++KA Y Y+ R P LV YNRFV L S+
Sbjct: 36 RERSLSVSELMTILIHFHQSHYRHFKASYTDYVLERLRAACPGLVRYNRFVALIPSVLVP 95
Query: 68 QIASLNRCCLGQCTGISLTDKAPL 91
L C G CTGI+ D L
Sbjct: 96 LCGYLRPRCFGTCTGIAGIDATAL 119
>gi|10441345|gb|AAG16999.1|AF184152_2 transposase [Piscirickettsia salmonis]
Length = 239
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
++ N+ ++S S+IMTI+I FH S +N+K +YL I S FP+ VSYNRFVEL S
Sbjct: 33 KKRNKPSQMSTSEIMTIMIYFHKSNYRNFKMYYLHVIKGSMVKYFPNSVSYNRFVELMPS 92
Query: 64 IGFKQ---IASLNRCCLGQCTGISLTDKAPLRYLFEK 97
I IA+ + TGI D LR EK
Sbjct: 93 ILLPLCFFIAAQGK----TATGIYFVDSTILRVCHEK 125
>gi|89142213|ref|YP_512234.1| transposase [Pasteurella trehalosi]
gi|88853296|emb|CAJ65905.1| transposase [Pasteurella trehalosi]
gi|104303838|gb|ABF72152.1| transposase [Actinobacillus pleuropneumoniae]
Length = 294
Score = 58.5 bits (140), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 8 RKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGFK 67
R KIS +IMTIL+LFH + + +K FY ++ + FP L SY+RF+EL
Sbjct: 35 RACKISVPEIMTILVLFHQLRYRQFKGFYYHHMLGMMKKDFPDLPSYSRFIELVPRALVP 94
Query: 68 QIASLNRCCLGQCTGISLTDKAPL 91
A L + +G CTGIS D L
Sbjct: 95 LCAYL-KSLMGSCTGISFVDATKL 117
>gi|148652513|ref|YP_001279606.1| transposase, IS4 family protein [Psychrobacter sp. PRwf-1]
gi|148571597|gb|ABQ93656.1| transposase, IS4 family protein [Psychrobacter sp. PRwf-1]
Length = 289
Score = 58.2 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
R+ R +IS +++MTIL+LFH + + +KAFY ++ + +FP+L SY+RF+EL
Sbjct: 31 RQRLRACQISVAEMMTILVLFHQLRYRQFKAFYYHHMLGMMKREFPNLPSYSRFIELVPR 90
Query: 64 IGFKQIASLNRCCLGQCTGISLTDKAPL 91
+ S + +G CTGIS D +
Sbjct: 91 -SIMPLCSYLQSMMGDCTGISYIDSTKI 117
>gi|119943862|ref|YP_941542.1| transposase, IS4 family protein [Psychromonas ingrahamii 37]
gi|119862466|gb|ABM01943.1| transposase, IS4 family protein [Psychromonas ingrahamii 37]
Length = 299
Score = 58.2 bits (139), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 10/91 (10%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
RR NR +S ++IMTI+I FH S +++K +YL Y+ +P FP L+SY RF+E+ S
Sbjct: 35 RRVNR---MSKAEIMTIIISFHQSHYRDFKNYYLGYVAKYLKPYFPALLSYTRFIEVMPS 91
Query: 64 IGFKQIASLN---RCCLGQCTGISLTDKAPL 91
+ I LN G+ TGI+ D +
Sbjct: 92 V----IIPLNTYLTTLFGKPTGIAFIDSTKI 118
>gi|28611027|emb|CAD32236.1| transposase [Moraxella sp. O245]
Length = 293
Score = 57.8 bits (138), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 8 RKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGFK 67
R +IS +++MTIL+LFH + + +KAFY ++ + +FP+L SY+RF+EL
Sbjct: 35 RACQISVAEMMTILVLFHQLRYRQFKAFYYHHMLGMMKREFPNLPSYSRFIELVPR-SII 93
Query: 68 QIASLNRCCLGQCTGISLTDKAPL 91
+ S + +G CTGIS D +
Sbjct: 94 PLCSYLQSMMGDCTGISYIDSTKI 117
>gi|126660432|ref|ZP_01731542.1| putative transposase [Cyanothece sp. CCY0110]
gi|126618298|gb|EAZ89057.1| putative transposase [Cyanothece sp. CCY0110]
Length = 302
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 8 RKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNSIGFK 67
++ ++ S++ TI+I FH S +N+K +YL++I + +FP+LVSYNRFVEL S
Sbjct: 19 KESRLCLSEVATIVIYFHSSGYRNFKNYYLKHIIKHCQSEFPNLVSYNRFVELIPSALMP 78
Query: 68 QIASLNRCCLGQCTGISLTDKAPL 91
I LN G+ TGIS D L
Sbjct: 79 LIFYLN-TRKGEVTGISFIDSTKL 101
>gi|91793283|ref|YP_562934.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91715285|gb|ABE55211.1| transposase, IS4 [Shewanella denitrificans OS217]
Length = 295
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVEL 60
R+ R ++S S+IMTI+ILFH S +++K +Y Y+ + FPHL+SY RF+EL
Sbjct: 32 RKRQRSSRMSMSEIMTIIILFHTSHHRDFKNYYTGYLARFFKSDFPHLLSYTRFLEL 88
>gi|91792448|ref|YP_562099.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91792563|ref|YP_562214.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91794051|ref|YP_563702.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91794465|ref|YP_564116.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91714450|gb|ABE54376.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91714565|gb|ABE54491.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91716053|gb|ABE55979.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91716467|gb|ABE56393.1| transposase, IS4 [Shewanella denitrificans OS217]
Length = 295
Score = 57.4 bits (137), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVEL 60
R+ R ++S S+IMTI+ILFH S +++K +Y Y+ + FPHL+SY RF+EL
Sbjct: 32 RKRQRSSRMSMSEIMTIIILFHTSHHRDFKNYYTGYLARFFKSDFPHLLSYTRFLEL 88
>gi|91794331|ref|YP_563982.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91716333|gb|ABE56259.1| transposase, IS4 [Shewanella denitrificans OS217]
Length = 295
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVEL 60
R+ R ++S S+IMTI+ILFH S +++K +Y Y+ + +FP+L+SY RF+EL
Sbjct: 32 RKRQRSSRMSMSEIMTIIILFHTSHHRDFKNYYTGYLARFFKSEFPNLLSYTRFIEL 88
>gi|91794747|ref|YP_564398.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91716749|gb|ABE56675.1| transposase, IS4 [Shewanella denitrificans OS217]
Length = 295
Score = 55.8 bits (133), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVEL 60
R+ R ++S S+IMTI+ILFH S +++K +Y Y+ + +FP+L+SY RF+EL
Sbjct: 32 RKRQRSSRMSMSEIMTIIILFHTSHHRDFKNYYTGYLARFFKSEFPNLLSYTRFIEL 88
>gi|91793808|ref|YP_563459.1| transposase, IS4 [Shewanella denitrificans OS217]
gi|91715810|gb|ABE55736.1| transposase, IS4 [Shewanella denitrificans OS217]
Length = 295
Score = 55.8 bits (133), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 38/57 (66%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVEL 60
R+ R ++ S+IMTI+ILFH S +++K +Y Y+ + FPHL+SY RF+EL
Sbjct: 32 RKRQRSSRMDMSEIMTIIILFHTSHHRDFKNYYTGYLARFFKSDFPHLLSYTRFLEL 88
>gi|121606978|ref|YP_984307.1| transposase, IS4 family protein [Polaromonas naphthalenivorans CJ2]
gi|120595947|gb|ABM39386.1| transposase, IS4 family protein [Polaromonas naphthalenivorans CJ2]
Length = 294
Score = 55.5 bits (132), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
+R NR +S S++ TI++LFH + + +K FY + +FP +SY RFV L
Sbjct: 33 QRRNRTGSMSLSEMTTIVVLFHTMRGRQFKEFYRGTVCRFMTSEFPRQLSYTRFVALMPR 92
Query: 64 IGFKQIASLNRCCLGQCTGISLTDKAPL 91
+A+L + G CTGIS+ D PL
Sbjct: 93 CAV-VLAALFQTLKGTCTGISIADSTPL 119
>gi|30249121|ref|NP_841191.1| putative protease [Nitrosomonas europaea ATCC 19718]
gi|30138738|emb|CAD85044.1| putative protease [Nitrosomonas europaea ATCC 19718]
Length = 161
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 3 VRRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQN 62
V++ R +S S++MT+ +LFH + + +K+FYL Y+ + +FP L SY R VEL
Sbjct: 31 VKKRKRCSGLSLSELMTLTVLFHQLRFRQFKSFYLVYVCRHLQAEFPKLPSYQRCVELLP 90
Query: 63 SIGFKQIASLNRCCLGQCTGISLTD 87
+A+L GQC GIS+ D
Sbjct: 91 RC-VAPLAALFEMLKGQCDGISIAD 114
>gi|37524409|ref|NP_927753.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37524578|ref|NP_927922.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37525086|ref|NP_928430.1| Transposase, IS982 Familly [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37525588|ref|NP_928932.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37525696|ref|NP_929040.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37525754|ref|NP_929098.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37527092|ref|NP_930436.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37527186|ref|NP_930530.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37527973|ref|NP_931318.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37528146|ref|NP_931491.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37528168|ref|NP_931513.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|37528388|ref|NP_931733.1| Transposase IS982 family [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36783833|emb|CAE12695.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784002|emb|CAE12868.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784512|emb|CAE13410.1| Transposase, IS982 Familly [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785016|emb|CAE13939.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785125|emb|CAE14054.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785183|emb|CAE14113.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786525|emb|CAE15582.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786620|emb|CAE15682.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787409|emb|CAE16500.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787583|emb|CAE16687.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787605|emb|CAE16711.1| Transposase, IS982 family [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787826|emb|CAE16941.1| Transposase IS982 family [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 294
Score = 53.9 bits (128), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 4 RRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQNS 63
R R+ + S+IMTILILFH+S +++K FYL++I FP L+SY RFV + S
Sbjct: 32 RLRRRQGHMYPSEIMTILILFHMSHYRDFKHFYLEHIWKYHHKDFPTLLSYPRFVSVAPS 91
Query: 64 IGFKQIASLNRCCLGQCTGISLTDKAPL 91
+ + L + G+ TGI+ D L
Sbjct: 92 VLVPLCSYLTQ-LKGKPTGIAFIDSTRL 118
>gi|30249701|ref|NP_841771.1| Transposase IS4 family [Nitrosomonas europaea ATCC 19718]
gi|30250390|ref|NP_842460.1| Transposase IS4 family [Nitrosomonas europaea ATCC 19718]
gi|30250423|ref|NP_842493.1| Transposase IS4 family [Nitrosomonas europaea ATCC 19718]
gi|30180738|emb|CAD85651.1| Transposase IS4 family [Nitrosomonas europaea ATCC 19718]
gi|30181185|emb|CAD86381.1| Transposase IS4 family [Nitrosomonas europaea ATCC 19718]
gi|30181218|emb|CAD86416.1| Transposase IS4 family [Nitrosomonas europaea ATCC 19718]
Length = 292
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 3 VRRWNRKVKISDSKIMTILILFHLSKRQNWKAFYLQYITCSGRPKFPHLVSYNRFVELQN 62
V++ R +S S++MT+ +LFH + + +K+FYL Y+ + +FP L SY R VEL
Sbjct: 31 VKKRKRCSGLSLSELMTLTVLFHQLRFRQFKSFYLVYVCRHLQAEFPKLPSYQRCVELLP 90
Query: 63 SIGFKQIASLNRCCLGQCTGISLTD 87
+A+L GQC GIS+ D
Sbjct: 91 RC-VAPLAALFEMLKGQCDGISIAD 114
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.328 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,223,342
Number of Sequences: 5470121
Number of extensions: 13206446
Number of successful extensions: 28912
Number of sequences better than 1.0e-05: 31
Number of HSP's better than 0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 28881
Number of HSP's gapped (non-prelim): 33
length of query: 112
length of database: 1,894,087,724
effective HSP length: 80
effective length of query: 32
effective length of database: 1,456,478,044
effective search space: 46607297408
effective search space used: 46607297408
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 124 (52.4 bits)