BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu0684
(99 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379215|ref|NP_721170.1| hypothetical protein SMU.753 [... 202 7e-51
gi|22536898|ref|NP_687749.1| phage shock protein C, putativ... 102 1e-20
gi|15674670|ref|NP_268844.1| hypothetical protein SPy_0583 ... 84 2e-15
gi|125718357|ref|YP_001035490.1| hypothetical protein SSA_1... 80 3e-14
gi|15902854|ref|NP_358404.1| hypothetical protein spr0810 [... 80 4e-14
gi|15900791|ref|NP_345395.1| hypothetical protein SP_0910 [... 79 8e-14
gi|28896356|ref|NP_802706.1| hypothetical protein SPs1444 [... 76 6e-13
gi|157076095|gb|ABV10778.1| PspC domain protein [Streptococ... 76 7e-13
gi|148997001|ref|ZP_01824655.1| hypothetical protein CGSSp1... 75 1e-12
gi|111657233|ref|ZP_01408003.1| hypothetical protein SpneT_... 70 3e-11
gi|116627551|ref|YP_820170.1| Putative stress-responsive tr... 62 1e-08
gi|55820743|ref|YP_139185.1| hypothetical protein stu0665 [... 60 4e-08
gi|81097185|ref|ZP_00875490.1| PspC [Streptococcus suis 89/... 52 9e-06
>gi|24379215|ref|NP_721170.1| hypothetical protein SMU.753 [Streptococcus mutans UA159]
gi|24377127|gb|AAN58476.1|AE014917_7 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 99
Score = 202 bits (513), Expect = 7e-51, Method: Composition-based stats.
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MSKATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYIFPGAIILYIILAVCLPY 60
MSKATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYIFPGAIILYIILAVCLPY
Sbjct: 1 MSKATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYIFPGAIILYIILAVCLPY 60
Query: 61 KEDLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
KEDLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW
Sbjct: 61 KEDLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
>gi|22536898|ref|NP_687749.1| phage shock protein C, putative [Streptococcus agalactiae
2603V/R]
gi|25010811|ref|NP_735206.1| hypothetical protein gbs0756 [Streptococcus agalactiae NEM316]
gi|76788406|ref|YP_329482.1| PspC domain protein [Streptococcus agalactiae A909]
gi|77405988|ref|ZP_00783066.1| phage shock protein C, putative [Streptococcus agalactiae H36B]
gi|77409112|ref|ZP_00785827.1| phage shock protein C, putative [Streptococcus agalactiae COH1]
gi|77410797|ref|ZP_00787155.1| phage shock protein C, putative [Streptococcus agalactiae CJB111]
gi|77413096|ref|ZP_00789297.1| putative phage shock protein C [Streptococcus agalactiae 515]
gi|22533749|gb|AAM99621.1|AE014225_4 phage shock protein C, putative [Streptococcus agalactiae
2603V/R]
gi|23095165|emb|CAD46400.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563463|gb|ABA46047.1| PspC domain protein [Streptococcus agalactiae A909]
gi|77160889|gb|EAO71999.1| putative phage shock protein C [Streptococcus agalactiae 515]
gi|77163176|gb|EAO74129.1| phage shock protein C, putative [Streptococcus agalactiae CJB111]
gi|77172290|gb|EAO75444.1| phage shock protein C, putative [Streptococcus agalactiae COH1]
gi|77175383|gb|EAO78174.1| phage shock protein C, putative [Streptococcus agalactiae H36B]
Length = 87
Score = 102 bits (253), Expect = 1e-20, Method: Composition-based stats.
Identities = 51/97 (52%), Positives = 70/97 (72%), Gaps = 11/97 (11%)
Query: 3 KATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYIFPGAIILYIILAVCLPYKE 62
K++FYK+RKG ++CGVVAGL+DKY W+L L+R+L AL +Y ++LYI+LAV LPYKE
Sbjct: 2 KSSFYKQRKGKLVCGVVAGLADKYNWDLALSRVLIALILYFTKFGLLLYILLAVFLPYKE 61
Query: 63 DLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
D+ + + QGPR+RKDAE + DD+ WFW
Sbjct: 62 DIIETRR--------QGPRRRKDAEPV---DDDGWFW 87
>gi|15674670|ref|NP_268844.1| hypothetical protein SPy_0583 [Streptococcus pyogenes M1 GAS]
gi|19745697|ref|NP_606833.1| hypothetical protein spyM18_0651 [Streptococcus pyogenes
MGAS8232]
gi|21909947|ref|NP_664215.1| hypothetical protein SpyM3_0411 [Streptococcus pyogenes MGAS315]
gi|50913852|ref|YP_059824.1| stress-responsive transcriptional regulator [Streptococcus
pyogenes MGAS10394]
gi|71903130|ref|YP_279933.1| stress-responsive transcriptional regulator PspC [Streptococcus
pyogenes MGAS6180]
gi|71910296|ref|YP_281846.1| stress-responsive transcriptional regulator [Streptococcus
pyogenes MGAS5005]
gi|94988105|ref|YP_596206.1| stress-responsive transcriptional regulator [Streptococcus
pyogenes MGAS9429]
gi|94989986|ref|YP_598086.1| Stress-responsive transcriptional regulator PspC [Streptococcus
pyogenes MGAS10270]
gi|94991992|ref|YP_600091.1| Stress-responsive transcriptional regulator PspC [Streptococcus
pyogenes MGAS2096]
gi|94993900|ref|YP_601998.1| Stress-responsive transcriptional regulator PspC [Streptococcus
pyogenes MGAS10750]
gi|139474203|ref|YP_001128919.1| hypothetical protein SpyM51378 [Streptococcus pyogenes str.
Manfredo]
gi|13621787|gb|AAK33565.1| hypothetical protein SPy_0583 [Streptococcus pyogenes M1 GAS]
gi|19747832|gb|AAL97332.1| hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|21904135|gb|AAM79018.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|50902926|gb|AAT86641.1| stress-responsive transcriptional regulator [Streptococcus
pyogenes MGAS10394]
gi|71802225|gb|AAX71578.1| stress-responsive transcriptional regulator PspC [Streptococcus
pyogenes MGAS6180]
gi|71853078|gb|AAZ51101.1| stress-responsive transcriptional regulator [Streptococcus
pyogenes MGAS5005]
gi|94541613|gb|ABF31662.1| stress-responsive transcriptional regulator [Streptococcus
pyogenes MGAS9429]
gi|94543494|gb|ABF33542.1| Stress-responsive transcriptional regulator PspC [Streptococcus
pyogenes MGAS10270]
gi|94545500|gb|ABF35547.1| Stress-responsive transcriptional regulator PspC [Streptococcus
pyogenes MGAS2096]
gi|94547408|gb|ABF37454.1| Stress-responsive transcriptional regulator PspC [Streptococcus
pyogenes MGAS10750]
gi|134272450|emb|CAM30706.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
Length = 90
Score = 84.3 bits (207), Expect = 2e-15, Method: Composition-based stats.
Identities = 51/97 (52%), Positives = 73/97 (75%), Gaps = 8/97 (8%)
Query: 3 KATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYIFPGAIILYIILAVCLPYKE 62
+ FYK+RK ++ GV+AGL+DKYGW+L LAR+LAAL +Y ++LYI+LA+ LPYKE
Sbjct: 2 ETKFYKQRKNRLVAGVIAGLADKYGWDLALARVLAALLIYGTGFGVLLYILLAIFLPYKE 61
Query: 63 DLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
DL ++ R+ +GPR+RKDA+V++EE+D WFW
Sbjct: 62 DLLEE-------RYGRGPRRRKDADVLNEEEDG-WFW 90
>gi|125718357|ref|YP_001035490.1| hypothetical protein SSA_1549 [Streptococcus sanguinis SK36]
gi|125498274|gb|ABN44940.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 98
Score = 80.5 bits (197), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 9/95 (9%)
Query: 6 FYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYI-FPGAIILYIILAVCLPYKEDL 64
FYK +K +I GV++GL DK+ ++L L R L +F + F I++YI+LA+ +PYKED+
Sbjct: 12 FYKLKKNRLISGVLSGLCDKFDFDLSLVRFLFIIFTVVNFGLGILIYILLAMVMPYKEDI 71
Query: 65 EKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
E++ + GPRKRK+AE I E+D + WFW
Sbjct: 72 EEE-------MYGTGPRKRKEAEAI-EDDKDGWFW 98
>gi|15902854|ref|NP_358404.1| hypothetical protein spr0810 [Streptococcus pneumoniae R6]
gi|15458410|gb|AAK99614.1| Hypothetical protein [Streptococcus pneumoniae R6]
Length = 100
Score = 80.1 bits (196), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 10/97 (10%)
Query: 4 ATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYI-FPGAIILYIILAVCLPYKE 62
+ FYK R+ MI GV+AGLSDK+ +++ L R L A+F F +I+YIILA +P KE
Sbjct: 13 SKFYKMRRNRMISGVLAGLSDKWNFDVTLVRFLFAIFTVANFGLGVIIYIILASIMPTKE 72
Query: 63 DLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
++E + + GPRKRK+A+ ID D+ WFW
Sbjct: 73 EIEAE-------MYGTGPRKRKEAQAID--DNEGWFW 100
>gi|15900791|ref|NP_345395.1| hypothetical protein SP_0910 [Streptococcus pneumoniae TIGR4]
gi|116516907|ref|YP_816287.1| hypothetical protein SPD_0803 [Streptococcus pneumoniae D39]
gi|148984647|ref|ZP_01817915.1| hypothetical protein CGSSp3BS71_01347 [Streptococcus pneumoniae
SP3-BS71]
gi|148988342|ref|ZP_01819789.1| hypothetical protein CGSSp6BS73_05930 [Streptococcus pneumoniae
SP6-BS73]
gi|148992960|ref|ZP_01822579.1| spermidine synthase [Streptococcus pneumoniae SP9-BS68]
gi|149002454|ref|ZP_01827388.1| hypothetical protein CGSSp14BS69_12036 [Streptococcus pneumoniae
SP14-BS69]
gi|149010450|ref|ZP_01831821.1| spermidine synthase [Streptococcus pneumoniae SP19-BS75]
gi|149019495|ref|ZP_01834814.1| hypothetical protein CGSSp23BS72_02813 [Streptococcus pneumoniae
SP23-BS72]
gi|14972384|gb|AAK75035.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|116077483|gb|ABJ55203.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
gi|147759391|gb|EDK66383.1| hypothetical protein CGSSp14BS69_12036 [Streptococcus pneumoniae
SP14-BS69]
gi|147764931|gb|EDK71860.1| spermidine synthase [Streptococcus pneumoniae SP19-BS75]
gi|147923038|gb|EDK74153.1| hypothetical protein CGSSp3BS71_01347 [Streptococcus pneumoniae
SP3-BS71]
gi|147926023|gb|EDK77097.1| hypothetical protein CGSSp6BS73_05930 [Streptococcus pneumoniae
SP6-BS73]
gi|147928412|gb|EDK79428.1| spermidine synthase [Streptococcus pneumoniae SP9-BS68]
gi|147930870|gb|EDK81850.1| hypothetical protein CGSSp23BS72_02813 [Streptococcus pneumoniae
SP23-BS72]
Length = 90
Score = 79.0 bits (193), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/97 (44%), Positives = 61/97 (62%), Gaps = 10/97 (10%)
Query: 4 ATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYI-FPGAIILYIILAVCLPYKE 62
+ FYK R+ MI GV+AGLSDK+ +++ L R L A+F F +I+YIILA +P KE
Sbjct: 3 SKFYKMRRNRMISGVLAGLSDKWNFDVTLVRFLFAIFTVANFGLGVIIYIILASIMPTKE 62
Query: 63 DLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
++E + + GPRKRK+A+ ID D+ WFW
Sbjct: 63 EIEAE-------MYGTGPRKRKEAQAID--DNEGWFW 90
>gi|28896356|ref|NP_802706.1| hypothetical protein SPs1444 [Streptococcus pyogenes SSI-1]
gi|28811607|dbj|BAC64539.1| hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 78
Score = 75.9 bits (185), Expect = 6e-13, Method: Composition-based stats.
Identities = 47/86 (54%), Positives = 66/86 (76%), Gaps = 8/86 (9%)
Query: 14 MICGVVAGLSDKYGWELPLARILAALFMYIFPGAIILYIILAVCLPYKEDLEKDNQQRTY 73
M+ GV+AGL+DKYGW+L LAR+LAAL +Y ++LYI+LA+ LPYKEDL ++
Sbjct: 1 MVAGVIAGLADKYGWDLALARVLAALLIYGTGFGVLLYILLAIFLPYKEDLLEE------ 54
Query: 74 YRHAQGPRKRKDAEVIDEEDDNKWFW 99
R+ +GPR+RKDA+V++EE+D WFW
Sbjct: 55 -RYGRGPRRRKDADVLNEEEDG-WFW 78
>gi|157076095|gb|ABV10778.1| PspC domain protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 90
Score = 75.9 bits (185), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/98 (44%), Positives = 59/98 (60%), Gaps = 10/98 (10%)
Query: 3 KATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALF-MYIFPGAIILYIILAVCLPYK 61
K YK R+ ++ GV+AGL+DK+ ++L L R L LF + F +++YI LAV LP K
Sbjct: 2 KTVLYKTRRNRLLAGVLAGLADKFKFDLSLIRFLYILFTISSFGLGVVIYISLAVLLPTK 61
Query: 62 EDLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
ED+E + + GPRKRKDAE ID DD FW
Sbjct: 62 EDIEAE-------MYGTGPRKRKDAEPID--DDKGLFW 90
>gi|148997001|ref|ZP_01824655.1| hypothetical protein CGSSp11BS70_09575 [Streptococcus pneumoniae
SP11-BS70]
gi|149007141|ref|ZP_01830805.1| hypothetical protein CGSSp18BS74_04811 [Streptococcus pneumoniae
SP18-BS74]
gi|147756701|gb|EDK63741.1| hypothetical protein CGSSp11BS70_09575 [Streptococcus pneumoniae
SP11-BS70]
gi|147761179|gb|EDK68146.1| hypothetical protein CGSSp18BS74_04811 [Streptococcus pneumoniae
SP18-BS74]
Length = 90
Score = 75.1 bits (183), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/95 (42%), Positives = 59/95 (62%), Gaps = 8/95 (8%)
Query: 4 ATFYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYI-FPGAIILYIILAVCLPYKE 62
+ FYK R+ MI GV+AGLSDK+ +++ L R L A+F F +I+YIILA +P KE
Sbjct: 3 SKFYKMRRNRMISGVLAGLSDKWNFDVTLVRFLFAIFTVANFGLGVIIYIILASIMPTKE 62
Query: 63 DLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKW 97
++E + + GPRKRK+A+ ID+ + W
Sbjct: 63 EIEAE-------MYGTGPRKRKEAQAIDDNEGRFW 90
>gi|111657233|ref|ZP_01408003.1| hypothetical protein SpneT_02001546 [Streptococcus pneumoniae
TIGR4]
Length = 78
Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats.
Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 10/87 (11%)
Query: 14 MICGVVAGLSDKYGWELPLARILAALFMYI-FPGAIILYIILAVCLPYKEDLEKDNQQRT 72
MI GV+AGLSDK+ +++ L R L A+F F +I+YIILA +P KE++E +
Sbjct: 1 MISGVLAGLSDKWNFDVTLVRFLFAIFTVANFGLGVIIYIILASIMPTKEEIEAE----- 55
Query: 73 YYRHAQGPRKRKDAEVIDEEDDNKWFW 99
+ GPRKRK+A+ ID D+ WFW
Sbjct: 56 --MYGTGPRKRKEAQAID--DNEGWFW 78
>gi|116627551|ref|YP_820170.1| Putative stress-responsive transcriptional regulator
[Streptococcus thermophilus LMD-9]
gi|116100828|gb|ABJ65974.1| Putative stress-responsive transcriptional regulator
[Streptococcus thermophilus LMD-9]
Length = 87
Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats.
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 11/94 (11%)
Query: 6 FYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYIFPGAIILYIILAVCLPYKEDLE 65
FYK RK ++ GVVAGL+DK+GW L LAR+LA + M I LY++LA+ LPYKED+
Sbjct: 5 FYKIRKNRLVAGVVAGLADKFGWNLTLARVLAIILMVSTQFGIFLYLVLALLLPYKEDIY 64
Query: 66 KDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
+ + + RKRK+AE +++E W W
Sbjct: 65 PEIKLKD-------GRKRKNAEPVEDE----WKW 87
>gi|55820743|ref|YP_139185.1| hypothetical protein stu0665 [Streptococcus thermophilus LMG
18311]
gi|55822635|ref|YP_141076.1| hypothetical protein str0665 [Streptococcus thermophilus
CNRZ1066]
gi|55736728|gb|AAV60370.1| conserved hypothetical protein [Streptococcus thermophilus LMG
18311]
gi|55738620|gb|AAV62261.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
Length = 87
Score = 60.1 bits (144), Expect = 4e-08, Method: Composition-based stats.
Identities = 41/94 (43%), Positives = 59/94 (62%), Gaps = 11/94 (11%)
Query: 6 FYKKRKGSMICGVVAGLSDKYGWELPLARILAALFMYIFPGAIILYIILAVCLPYKEDLE 65
FYK RK ++ GV+AGL+DK+GW L LAR+LA + M I LY++LA+ LPYKED+
Sbjct: 5 FYKIRKNRLVAGVLAGLADKFGWNLTLARVLAIILMVSTQFGIFLYLVLALLLPYKEDIY 64
Query: 66 KDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWFW 99
+ + + RKRK+AE +++E W W
Sbjct: 65 PEIKLKD-------GRKRKNAEPVEDE----WKW 87
>gi|81097185|ref|ZP_00875490.1| PspC [Streptococcus suis 89/1591]
gi|80976770|gb|EAP40348.1| PspC [Streptococcus suis 89/1591]
Length = 90
Score = 52.4 bits (124), Expect = 9e-06, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 6 FYKKRKGSMICGVVAGLSDKYGWELPLAR---ILAALFMYIFPGAIILYIILAVCLPYKE 62
YK R+G ++ GV+AG++ K GWE + R I L F I LYI A LPYKE
Sbjct: 5 LYKVRQGKIVSGVLAGIAHKLGWESWVTRAIFIAGLLLGKSFLLLIALYIAAAYFLPYKE 64
Query: 63 DLEKDNQQRTYYRHAQGPRKRKDAEVIDEEDDNKWF 98
D R R+ GPRK K+AE I++ WF
Sbjct: 65 D-------RDAERYGTGPRKIKEAEKINKS----WF 89
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.324 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,368,796
Number of Sequences: 5470121
Number of extensions: 14032724
Number of successful extensions: 38351
Number of sequences better than 1.0e-05: 13
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 38328
Number of HSP's gapped (non-prelim): 13
length of query: 99
length of database: 1,894,087,724
effective HSP length: 68
effective length of query: 31
effective length of database: 1,522,119,496
effective search space: 47185704376
effective search space used: 47185704376
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 124 (52.4 bits)