R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|976178|gb|AAB48348.1| (L47183) reverse transcriptase [Arabidopsis thaliana]
Length = 199
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 0.00028, P = 0.00028
Identities = 28/84 (33%), Positives = 44/84 (52%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG FY RFW + G D+ + + + +F +N+T I +I +I R
Sbjct: 4 PDGMTALFYQRFWDLTGPDLVKVVQNFHSSASFDERLNETNICLIPKIDRPRRMAEFRPI 63
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LCN +K++ S+VL+ RLK +L
Sbjct: 64 SLCNVSYKVI--SKVLSSRLKKIL 85
>gi|2129715|pir||S65817 RNA-directed DNA polymerase (EC 2.7.7.49) (clone B3) -
Arabidopsis thaliana retrotransposon Ta25 (fragment)
Length = 184
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.012, P = 0.012
Identities = 25/77 (32%), Positives = 41/77 (53%), Frame = +1
Query: 337 FYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TNLLCNGGF 516
FY RFW + G D+ + + + +F +N+T I +I +I R LCN +
Sbjct: 5 FYQRFWDLTGPDLVKVVQNFHSSASFDERLNETNICLIPKIDRPRRMAEFRPISLCNVSY 64
Query: 517 KILFLSEVLAKRLKNVL 567
K++ S+VL+ RLK +L
Sbjct: 65 KVI--SKVLSSRLKKIL 79
>gi|7485171|pir||G71420 hypothetical protein - Arabidopsis thaliana
>gi|2244915|emb|CAB10337.1| (Z97339) reverse transcriptase like
protein [Arabidopsis thaliana] >gi|7268307|emb|CAB78601.1|
(AL161542) reverse transcriptase like protein [Arabidopsis
thaliana]
Length = 929
Frame 1 hits (HSPs): __ _____
__________________________________________________
Database sequence: | | | | | | | | 929
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.026, Sum P(2) = 0.026
Identities = 27/86 (31%), Positives = 43/86 (50%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ FY + W GE V + + G P S ND + ++ ++ R +
Sbjct: 264 PDGYQPVFYQQCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPV 323
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573
LCN FKI+ ++++ RLKNV+ K
Sbjct: 324 SLCNVLFKII--TKMMVIRLKNVISK 347
Score = 40 (14.1 bits), Expect = 0.026, Sum P(2) = 0.026
Identities = 8/14 (57%), Positives = 10/14 (71%), Frame = +1
Query: 88 LLLQEEAFWKQQSK 129
LL QEE W Q+S+
Sbjct: 143 LLHQEETLWFQKSR 156
>gi|4755191|gb|AAD29058.1|AC007018_6 (AC007018) putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1229
Frame 1 hits (HSPs): _ _____
__________________________________________________
Database sequence: | | | | | | | | | | 1229
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.029, Sum P(2) = 0.029
Identities = 26/86 (30%), Positives = 45/86 (52%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDGF GFYH +W + DV + ++ FP +N+T I +I + +
Sbjct: 343 PDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPI 402
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573
LCN +KI+ ++++ KR++ +L K
Sbjct: 403 ALCNIFYKIV--AKIMTKRMQLILPK 426
Score = 47 (16.5 bits), Expect = 0.029, Sum P(2) = 0.029
Identities = 8/11 (72%), Positives = 10/11 (90%), Frame = +1
Query: 100 EEAFWKQQSKV 132
EE FWKQ+S+V
Sbjct: 227 EEQFWKQRSRV 237
>gi|2583130|gb|AAB82639.1| (AC002387) putative non-LTR retroelement reverse
transcriptase [Arabidopsis thaliana]
Length = 1374
Frame 3 hits (HSPs): _ __
Frame 1 hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | 1374
0 500 1000
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.047, Sum P(4) = 0.046
Identities = 25/84 (29%), Positives = 43/84 (51%), Frame = +1
Query: 316 PDGFNLGF-YHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*T 492
PDG N GF Y +FW G+ + + + G+ +N T I +I +I + +
Sbjct: 448 PDGMN-GFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRP 506
Query: 493 NLLCNGGFKILFLSEVLAKRLKNVL 567
LCN +K++ +++A RLK +L
Sbjct: 507 ISLCNVIYKVI--GKLMANRLKKIL 529
Score = 48 (16.9 bits), Expect = 0.047, Sum P(4) = 0.046
Identities = 21/47 (44%), Positives = 30/47 (63%), Frame = +1
Query: 4 RIQS-RFRDDIKRCKQKLEFNREREL--LTKLLLQE----EAFWKQQSKV 132
RIQ +F+ D KQ + F+R REL L K L QE E FW+++S++
Sbjct: 296 RIQELQFKLDAAT-KQ-IPFDR-RELARLKKELSQEYNNEEQFWQEKSRI 342
Score = 45 (15.8 bits), Expect = 0.047, Sum P(4) = 0.046
Identities = 12/44 (27%), Positives = 24/44 (54%), Frame = +3
Query: 180 LFADGNGNHGVV-IDKVRSIITTDDNLKLVRPFMK*ELKEATFA 308
LFA + + V ++ + +++ N L+ P K E++ ATF+
Sbjct: 396 LFASEDVGYTVEELENLTPLVSDQMNNNLLAPITKEEVQRATFS 439
Score = 41 (14.4 bits), Expect = 0.047, Sum P(4) = 0.046
Identities = 6/11 (54%), Positives = 10/11 (90%), Frame = +3
Query: 135 LKSGDMNTKFF 167
+++GD NTK+F
Sbjct: 345 MRNGDRNTKYF 355
>gi|976174|gb|AAB48346.1| (L47181) reverse transcriptase [Arabidopsis thaliana]
Length = 199
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.051, P = 0.050
Identities = 26/84 (30%), Positives = 36/84 (42%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG FYH W + G DV + + +N T I +I +I
Sbjct: 4 PDGXXAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPI 63
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LC +KI+ S++L KRLK L
Sbjct: 64 SLCTASYKII--SKILIKRLKQCL 85
>gi|3746069|gb|AAC63844.1| (AC005311) putative non-LTR retroelement reverse
transcriptase [Arabidopsis thaliana]
Length = 1231
Frame 1 hits (HSPs): __ _____
__________________________________________________
Database sequence: | | | | | | | | | | 1231
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 0.061, Sum P(2) = 0.059
Identities = 27/86 (31%), Positives = 44/86 (51%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ FY + W G V + + G P+S ND + +I ++ R ++
Sbjct: 312 PDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPV 371
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573
LCN FKI+ ++++ RLKNV+ K
Sbjct: 372 SLCNVLFKII--TKMMVTRLKNVISK 395
Score = 38 (13.4 bits), Expect = 0.061, Sum P(2) = 0.059
Identities = 10/25 (40%), Positives = 15/25 (60%), Frame = +1
Query: 64 RERELLTKL---LLQEEAFWKQQSK 129
+E LL ++ L QEE W Q+S+
Sbjct: 180 KEEVLLKEMDLVLEQEETLWFQKSR 204
>gi|5001454|gb|AAD37021.1|AC007730_3 (AC007730) putative non-LTR retrolelement
reverse transcriptase [Arabidopsis thaliana]
Length = 732
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | 732
0 150 300 450 600
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.096, P = 0.092
Identities = 27/86 (31%), Positives = 40/86 (46%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDGF FY W + G+ V + + A G P ND + +I ++ R +
Sbjct: 9 PDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGTNDAIVVLIAKVLKPERITQFRPI 68
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573
LCN FK + ++ L RLK V+ K
Sbjct: 69 SLCNVLFKTI--TKTLVMRLKRVISK 92
>gi|3738337|gb|AAC63678.1| (AC005170) putative non-LTR retroelement reverse
transcriptase [Arabidopsis thaliana]
Length = 1216
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | || 1216
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.10, P = 0.098
Identities = 28/87 (32%), Positives = 45/87 (51%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ FY W + G++V A + A+G P VN T +A+I + + +
Sbjct: 194 PDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPI 253
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576
CN +K + S++LA RLK +L K+
Sbjct: 254 SCCNVLYKAI--SKILANRLKRILPKF 278
>gi|12323627|gb|AAG51783.1|AC079679_3 (AC079679) reverse transcriptase,
putative; 16838-20266 [Arabidopsis thaliana]
Length = 1142
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | 1142
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.12, Sum P(2) = 0.11
Identities = 27/84 (32%), Positives = 41/84 (48%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG F+ + W + D+ +L EG F +N T I +I + R
Sbjct: 232 PDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPI 291
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LCN G+K++ S++L +RLK VL
Sbjct: 292 SLCNVGYKVI--SKILCQRLKTVL 313
Score = 39 (13.7 bits), Expect = 0.12, Sum P(2) = 0.11
Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +3
Query: 135 LKSGDMNTKFF 167
+K GD N+KFF
Sbjct: 129 MKLGDNNSKFF 139
>gi|7488318|pir||T01191 RNA-directed DNA polymerase homolog F21E10.5 -
Arabidopsis thaliana >gi|3047086|gb|AAC13599.1| (AF058914) similar
to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31)
[Arabidopsis thaliana]
Length = 928
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 928
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 100 (35.2 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 26/87 (29%), Positives = 44/87 (50%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ FY W + G + A + A+G P +N T +A+I + + +
Sbjct: 361 PDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPI 420
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576
CN +K++ S+++A RLK VL K+
Sbjct: 421 SCCNVLYKVI--SKIIANRLKLVLPKF 445
Score = 42 (14.8 bits), Expect = 0.25, Sum P(2) = 0.22
Identities = 8/23 (34%), Positives = 12/23 (52%), Frame = +2
Query: 32 LRGVSRSLSLIEKGSCLRNFSCK 100
L+ RS S+ E G C + C+
Sbjct: 100 LQSFPRSYSVFEAGGCSDHLRCR 122
>gi|4335720|gb|AAD17398.1| (AC006248) putative non-LTR retroelement reverse
transcriptase [Arabidopsis thaliana]
Length = 1225
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | | | 1225
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.39, P = 0.32
Identities = 25/84 (29%), Positives = 42/84 (50%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG FY +W + G D+ + + + G F +N+T I +I + +
Sbjct: 395 PDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPI 454
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LCN +K++ S+VL+ RLK +L
Sbjct: 455 SLCNVSYKVI--SKVLSSRLKRLL 476
>gi|7767672|gb|AAF69169.1|AC007915_21 (AC007915) F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Frame 1 hits (HSPs): ___ _____
__________________________________________________
Database sequence: | | | | | | | | 1023
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.45, Sum P(2) = 0.36
Identities = 26/84 (30%), Positives = 40/84 (47%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG F+ + W D+ +L +G F +N T I +I + R
Sbjct: 298 PDGMTALFFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPI 357
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LCN G+KI+ S++L +RLK +L
Sbjct: 358 SLCNVGYKII--SKILCQRLKKIL 379
Score = 45 (15.8 bits), Expect = 0.45, Sum P(2) = 0.36
Identities = 13/47 (27%), Positives = 25/47 (53%), Frame = +1
Query: 7 IQSRFRDDIKRCKQKLEFNRERELLTKLLLQEEAFWKQQSK-VGLKVG 147
I + RDD + ++ + L + + EE +W Q+S+ + +KVG
Sbjct: 154 IDAAQRDDSRTSEEITDLTIR---LKEAYIDEEQYWYQKSRSLWMKVG 198
>gi|976284|gb|AAB48350.1| (L47194) reverse transcriptase [Arabidopsis thaliana]
Length = 198
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 0.47, P = 0.38
Identities = 23/86 (26%), Positives = 39/86 (45%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG FY W + G V + + +G P ND +A+I ++ + +
Sbjct: 4 PDGIQAVFYQDSWDVVGTSVTKFVLDFFRDGVLPEKTNDVLVALIPKVLKPEKITQFRAI 63
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573
LCN FK + ++ + R+K V+ K
Sbjct: 64 SLCNVLFKAI--TKTMVGRMKGVMQK 87
>gi|7485606|pir||T04018 hypothetical protein F17A8.60 - Arabidopsis thaliana
>gi|4538901|emb|CAB39638.1| (AL049482) RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
>gi|7267666|emb|CAB78094.1| (AL161515) RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
Length = 1274
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): __ ____
__________________________________________________
Database sequence: | | | | 1274
0 500 1000
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.49, Sum P(3) = 0.39
Identities = 21/81 (25%), Positives = 41/81 (50%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDGF+ F+H +W + DV + + + +N+T + +I +I +
Sbjct: 389 PDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPI 448
Query: 496 LLCNGGFKILFLSEVLAKRLK 558
LCN +KI+ +++L +RL+
Sbjct: 449 ALCNVQYKIV--AKILTRRLQ 467
Score = 49 (17.2 bits), Expect = 0.49, Sum P(3) = 0.39
Identities = 9/12 (75%), Positives = 10/12 (83%), Frame = +1
Query: 97 QEEAFWKQQSKV 132
QEE FWKQ S+V
Sbjct: 272 QEELFWKQWSRV 283
Score = 44 (15.5 bits), Expect = 0.49, Sum P(3) = 0.39
Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3
Query: 174 EGLFADGNGNHGVVIDKVRS-IITTDDNLKLVRPFMK*ELKEATFA 308
+ +F N + V+ + S II++ N +L++ E+KEA F+
Sbjct: 335 QNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFS 380
>gi|7267526|emb|CAB78008.1| (AL161513) putative protein [Arabidopsis thaliana]
>gi|7321072|emb|CAB82119.1| (AL161813) putative protein
[Arabidopsis thaliana]
Length = 947
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 947
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.63, P = 0.47
Identities = 24/86 (27%), Positives = 41/86 (47%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ FY W + G V + + + G P ND + +I ++ R +
Sbjct: 206 PDGYQPIFYQSCWEVVGNSVIRFALDFFSSGILPPQTNDALVVLIPKVPKPERMNQFRPI 265
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573
LCN FK++ ++++ RLK V+ K
Sbjct: 266 SLCNAIFKMI--TKMMVLRLKKVIGK 289
>gi|4522005|gb|AAD21778.1| (AC007069) putative non-LTR retroelement reverse
transcriptase [Arabidopsis thaliana]
Length = 1715
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 1715
0 500 1000 1500
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.94, P = 0.61
Identities = 26/83 (31%), Positives = 36/83 (43%), Frame = +1
Query: 319 DGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TNL 498
DGF FYH W + G DV + + +N T I +I +I
Sbjct: 811 DGFTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPIS 870
Query: 499 LCNGGFKILFLSEVLAKRLKNVL 567
LC +KI+ S++L KRLK L
Sbjct: 871 LCTASYKII--SKILIKRLKQCL 891
>gi|3785984|gb|AAC67331.1| (AC005560) putative non-LTR retroelement reverse
transcriptase [Arabidopsis thaliana]
Length = 1449
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 1449
0 500 1000
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 1.0, P = 0.64
Identities = 26/84 (30%), Positives = 43/84 (51%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ FY R W + G + A + +G P VN T +A+I + + +
Sbjct: 888 PDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPI 947
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
CN +K++ S+++A RLK+VL
Sbjct: 948 SCCNVIYKVI--SKIIANRLKHVL 969
>gi|7484649|pir||T14619 reverse transcriptase - beet retrotransposon (fragment)
>gi|2462134|emb|CAA73798.1| (Y13368) reverse transcriptase [Beta
vulgaris]
Length = 507
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): __ _________
__________________________________________________
Database sequence: | | | | | 507
0 150 300 450
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 1.4, Sum P(3) = 0.74
Identities = 23/85 (27%), Positives = 42/85 (49%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDGFN F W + +D+++ + A G+ P N IA+I + ++ R
Sbjct: 318 PDGFNFKFIKSSWEVIKKDIYKIVEDFWASGSLPHGCNSAFIALIPKT----QHPRGFNE 373
Query: 496 L--LCNGGFKILFLSEVLAKRLKNVLD 570
+ G ++++LA+RL+ V+D
Sbjct: 374 FRPISMVGCLYKIIAKILARRLQRVMD 400
Score = 41 (14.4 bits), Expect = 1.4, Sum P(3) = 0.74
Identities = 6/12 (50%), Positives = 10/12 (83%), Frame = +1
Query: 25 DDIKRCKQKLEF 60
D+IK C++K+ F
Sbjct: 161 DNIKHCEEKIHF 172
Score = 40 (14.1 bits), Expect = 1.4, Sum P(3) = 0.74
Identities = 6/11 (54%), Positives = 9/11 (81%), Frame = +3
Query: 135 LKSGDMNTKFF 167
+K GD NT++F
Sbjct: 217 IKEGDSNTRYF 227
>gi|11358077|pir||T47440 hypothetical protein T18B22.50 - Arabidopsis thaliana
>gi|6967113|emb|CAB72467.1| (AL138652) putative protein
[Arabidopsis thaliana]
Length = 762
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | || 762
0 150 300 450 600 750
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 1.4, P = 0.75
Identities = 27/87 (31%), Positives = 43/87 (49%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDGF F+ W + G + A + A G P VN T +A+I + S +
Sbjct: 26 PDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKDYRPI 85
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576
CN +K++ S++LA RLK +L ++
Sbjct: 86 SCCNVMYKVI--SKILANRLKLLLPQF 110
>gi|4581169|gb|AAD24652.1|AC006220_8 (AC006220) putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 977
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 977
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 1.4, P = 0.76
Identities = 25/84 (29%), Positives = 41/84 (48%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ FY W + GE+ A + +G P VN T +A+I + +
Sbjct: 588 PDGYRTEFYKATWDIIGEEFVLAIKSFFEKGFLPKGVNSTILALIPKKLEEIEMKDYRPI 647
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
CN +K++ S+++A RLK +L
Sbjct: 648 SCCNVIYKVI--SKIIANRLKRLL 669
>gi|3004480|emb|CAA12932.1| (AJ228333) reverse transcriptase [Pinus elliottii]
Length = 194
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 2.3, P = 0.90
Identities = 25/84 (29%), Positives = 42/84 (50%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG + FY W + D+++ S+N T IA++ ++ + E+
Sbjct: 4 PDGITINFYKVCWEIVKNDIWEIVEDSRRSKTILKSLNSTFIALVPKVEEAHTPEKFRPI 63
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LCN +KI+ S+V+A RLK +L
Sbjct: 64 ALCNVIYKII--SKVIANRLKIIL 85
>gi|7486147|pir||T04278 hypothetical protein F25I24.40 - Arabidopsis thaliana
>gi|4539357|emb|CAB40051.1| (AL049525) putative protein
[Arabidopsis thaliana] >gi|7267781|emb|CAB81184.1| (AL161518)
putative protein [Arabidopsis thaliana]
Length = 1294
Frame 3 hits (HSPs): _
Frame 1 hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | 1294
0 500 1000
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 2.5, Sum P(3) = 0.92
Identities = 27/85 (31%), Positives = 38/85 (44%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG FY W + G DV + ++ S+N T I +I +I
Sbjct: 810 PDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPI 869
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLD 570
LCN +KI+ S+ L +RLK LD
Sbjct: 870 ALCNVLYKII--SKCLVERLKGHLD 892
Score = 45 (15.8 bits), Expect = 2.5, Sum P(3) = 0.92
Identities = 10/33 (30%), Positives = 20/33 (60%), Frame = +1
Query: 31 IKRCKQKLEFNRERELLTKLLLQEEAFWKQQSK 129
+ R +++ + +REL T EE +W+Q+S+
Sbjct: 672 VNRTERRTISHIQREL-TVAYRDEERYWQQKSR 703
Score = 42 (14.8 bits), Expect = 2.5, Sum P(3) = 0.92
Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +3
Query: 135 LKSGDMNTKFF 167
+K GD NT+FF
Sbjct: 707 MKEGDRNTEFF 717
>gi|7484447|pir||T14862 reverse transcriptase - Norway spruce retrotransposon
Ty1-copia like (fragment) >gi|2950370|emb|CAA11923.1| (AJ224372)
Reverse Transcriptase [Picea abies]
Length = 182
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 182
0 50 100 150
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 2.6, P = 0.92
Identities = 26/84 (30%), Positives = 43/84 (51%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDGF F+H W M +V++ A G ++N T I +I + + R +
Sbjct: 4 PDGFTNDFFHHCWAMIRHEVWEILEDSRAMGQVLQALNATFITLIPKEGNALRPAQYRPI 63
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LCN +K+L ++V+A+R K +L
Sbjct: 64 ALCNVIYKLL--TKVIARRFKPLL 85
>gi|2129713|pir||S65816 RNA-directed DNA polymerase (EC 2.7.7.49) (clone B2) -
Arabidopsis thaliana retrotransposon Ta23 (fragment)
Length = 184
Frame 1 hits (HSPs): _____________________
Annotated Domains: ___
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
__________________
Annotated Domains:
PROSITE ZINC_PROTEASE: Neutral zinc metallopepti 101..110
__________________
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 3.5, P = 0.97
Identities = 23/77 (29%), Positives = 33/77 (42%), Frame = +1
Query: 337 FYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TNLLCNGGF 516
FYH W + G DV + + +N T I +I +I LC +
Sbjct: 5 FYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASY 64
Query: 517 KILFLSEVLAKRLKNVL 567
KI+ S++L KRLK L
Sbjct: 65 KII--SKILIKRLKQCL 79
>gi|7486711|pir||T01893 hypothetical protein F8M12.22 - Arabidopsis thaliana
>gi|3513745|gb|AAC33961.1| (AF080118) contains similarity to
reverse trancriptase (Pfam: rvt.hmm, score: 42.57) [Arabidopsis
thaliana]
Length = 1662
Frame 3 hits (HSPs): __
Frame 1 hits (HSPs): __ ____
__________________________________________________
Database sequence: | | | | | 1662
0 500 1000 1500
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 5.3, Sum P(3) = 0.99
Identities = 27/85 (31%), Positives = 38/85 (44%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG FY W + G DV + ++ S+N T I +I +I
Sbjct: 830 PDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPI 889
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLD 570
LCN +KI+ S+ L +RLK LD
Sbjct: 890 ALCNVLYKII--SKCLVERLKGHLD 912
Score = 45 (15.8 bits), Expect = 5.3, Sum P(3) = 0.99
Identities = 10/33 (30%), Positives = 20/33 (60%), Frame = +1
Query: 31 IKRCKQKLEFNRERELLTKLLLQEEAFWKQQSK 129
+ R +++ + +REL T EE +W+Q+S+
Sbjct: 692 VNRTERRTISHIQREL-TVAYRDEERYWQQKSR 723
Score = 42 (14.8 bits), Expect = 5.3, Sum P(3) = 0.99
Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +3
Query: 135 LKSGDMNTKFF 167
+K GD NT+FF
Sbjct: 727 MKEGDRNTEFF 737
>gi|976280|gb|AAB48351.1| (L47191) reverse transcriptase [Arabidopsis thaliana]
Length = 199
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 5.6, P = 1.0
Identities = 27/84 (32%), Positives = 35/84 (41%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG FY +FW V + EG S+N T I +I + S
Sbjct: 4 PDGITAAFYQQFWPDVKNAVITEIQRFFQEGIMRDSMNHTNICLIPKKNVSTLMADFRPI 63
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LCN +KI+ S+ L RLK L
Sbjct: 64 ALCNVSYKII--SKTLVDRLKQHL 85
>gi|8778804|gb|AAF79812.1|AC020646_35 (AC020646) T32E20.6 [Arabidopsis
thaliana]
Length = 458
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | || 458
0 150 300 450
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 5.9, P = 1.0
Identities = 22/84 (26%), Positives = 41/84 (48%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PD + + FY W + G++ A + +G P ++N T +A+I + + +
Sbjct: 214 PDSYTMEFYKSTWDIIGKEFILAIKSFFVKGFLPKAINSTILALIPKKATTNEMKDYRPI 273
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
CN FK++ +++A LK VL
Sbjct: 274 SCCNVIFKVIL--KIIANPLKRVL 295
>gi|7488323|pir||T02730 RNA-directed DNA polymerase homolog T9I4.6 -
Arabidopsis thaliana >gi|3461840|gb|AAC33226.1| (AC005315) putative
non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
Length = 1529
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | || 1529
0 500 1000 1500
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 6.7, P = 1.0
Identities = 25/90 (27%), Positives = 44/90 (48%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ F+ W + G D A + +G P +N T +A+I + + +
Sbjct: 770 PDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPI 829
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKWSLR 585
CN +K++ S++LA RLK +L + L+
Sbjct: 830 SCCNVLYKVI--SKILANRLKLLLPSFILQ 857
>gi|7484446|pir||T14861 reverse transcriptase - Norway spruce retrotransposon
Ty1-copia like (fragment) >gi|2950366|emb|CAA11922.1| (AJ224369)
Reverse Transcriptase [Picea abies]
Length = 194
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 194
0 50 100 150
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 6.9, P = 1.0
Identities = 24/84 (28%), Positives = 41/84 (48%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDGF + F+H W + +DV++ G + N T + +I + +
Sbjct: 4 PDGFTMDFFHHCWDIIRKDVWEVVEESHTSGQVLQAFNATFLTLIPKEEWVTNPKHFRPI 63
Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567
LCN +KI+ ++V+A RLK +L
Sbjct: 64 ALCNVIYKII--TKVIANRLKPIL 85
>gi|4006833|gb|AAC95175.1| (AC005970) putative non-LTR retroelement reverse
transcriptase [Arabidopsis thaliana]
Length = 1352
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 1352
0 500 1000
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 7.6, P = 1.0
Identities = 27/84 (32%), Positives = 45/84 (53%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ + F+ W + G D+ A + +G P +N T +A+I S ++E S
Sbjct: 620 PDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALI-----SKKHEVSGMK 674
Query: 496 -----LLCNGGFKILFLSEVLAKRLKNVL 567
CN +KI+ S+++A RLK +L
Sbjct: 675 DYRPISCCNVLYKIV--SKLMANRLKEIL 701
>gi|7487278|pir||T00530 hypothetical protein T20K24.11 - Arabidopsis thaliana
>gi|3176712|gb|AAD12028.1| (AC002392) putative non-LTR retroelement
reverse transcriptase [Arabidopsis thaliana]
Length = 1447
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 1447
0 500 1000
Plus Strand HSPs:
Score = 90 (31.7 bits), Expect = 8.2, P = 1.0
Identities = 25/87 (28%), Positives = 43/87 (49%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDGF F+ W + G + A + A+G P +N T +A+I + + +
Sbjct: 881 PDGFTSEFFKATWEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPI 940
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576
CN +K++ S+++A RLK V K+
Sbjct: 941 SCCNVIYKVI--SKIIANRLKLVPPKF 965
>gi|9758853|dbj|BAB09379.1| (AB010694) non-LTR retroelement reverse
transcriptase-like protein [Arabidopsis thaliana]
Length = 1223
Frame 2 hits (HSPs): __
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | || 1223
0 150 300 450 600 750 900 1050 1200
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 9.7, Sum P(2) = 1.0
Identities = 24/87 (27%), Positives = 44/87 (50%), Frame = +1
Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495
PDG+ F+ W + G++ A + +G P +N T +A+I + + +
Sbjct: 473 PDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPI 532
Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576
CN +K++ S+++A RLK VL K+
Sbjct: 533 SCCNVLYKVI--SKIIANRLKLVLPKF 557
Score = 39 (13.7 bits), Expect = 9.7, Sum P(2) = 1.0
Identities = 7/19 (36%), Positives = 11/19 (57%), Frame = +2
Query: 44 SRSLSLIEKGSCLRNFSCK 100
S+S S+ E G C + C+
Sbjct: 216 SQSYSVFEAGGCSDHLRCR 234
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=6.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.369 0.173 0.632
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.351 0.159 0.632
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.157 0.547
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.348 0.152 0.492
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.353 0.157 0.563
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.354 0.160 0.575
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 217 217 10. 77 3 12 22 0.10 35
32 0.12 38
+2 0 217 217 10. 77 3 12 22 0.10 35
32 0.12 38
+1 0 217 217 10. 77 3 12 22 0.10 35
32 0.12 38
-1 0 217 217 10. 77 3 12 22 0.10 35
32 0.12 38
-2 0 217 217 10. 77 3 12 22 0.10 35
32 0.12 38
-3 0 217 217 10. 77 3 12 22 0.10 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 33
No. of states in DFA: 597 (59 KB)
Total size of DFA: 237 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 215.66u 1.07s 216.73t Elapsed: 00:01:14
Total cpu time: 215.69u 1.11s 216.80t Elapsed: 00:01:14
Start: Wed Jan 16 16:55:20 2002 End: Wed Jan 16 16:56:34 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000