WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract
RepeatMasker repeats found in sequence:No Repeats Found.Reference: Gish, Warren (1994-1997). unpublished. Gish, Warren and David J. States (1993). Identification of protein coding regions by database similarity search. Nat. Genet. 3:266-72.Notice: statistical significance is estimated under the assumption that the equivalent of one entire reading frame in the query sequence codes for protein and that significant alignments will involve only coding reading frames.
Query= 'E01A02_B01_03.ab1' (653 letters)
Translating both strands of query sequence in all 6 reading framesDatabase: nr 625,274 sequences; 197,782,623 total letters.Observed Numbers of Database Sequences Satisfying Various EXPECTation Thresholds (E parameter values) Histogram units: = 3 Sequences : less than 3 sequences EXPECTation Threshold (E parameter) | V Observed Counts--> 10000 691 119 |======================================= 6310 572 72 |======================== 3980 500 176 |========================================================== 2510 324 97 |================================ 1580 227 58 |=================== 1000 169 54 |================== 631 115 15 |===== 398 100 14 |==== 251 86 10 |=== 158 76 20 |====== 100 56 4 |= 63.1 52 2 |: 39.8 50 8 |== 25.1 42 4 |= 15.8 38 5 |= >>>>>>>>>>>>>>>>>>>>> Expect = 10.0, Observed = 33 <<<<<<<<<<<<<<<<< 10.0 33 5 |= 6.31 28 3 |= 3.98 25 3 |= 2.51 22 1 |: 1.58 21 4 |= 1.00 17 2 |: 0.63 15 3 |= 0.40 12 2 |: 0.25 10 0 | 0.16 10 2 |: 0.10 8 1 |: 0.063 7 3 |= 0.040 4 2 |: 0.025 2 0 | 0.016 2 1 |: Smallest Sum Reading High Probability Sequences producing High-scoring Segment Pairs: Frame Score P(N) N gi|976178|gb|AAB48348.1|(L47183) reverse transcriptas... +1 116 0.00028 1 gi|2129715|pir||S65817RNA-directed DNA polymerase (EC... +1 102 0.012 1 gi|7485171|pir||G71420hypothetical protein - Arabidop... +1 110 0.026 2 gi|4755191|gb|AAD29058.1|AC007018_6(AC007018) putativ... +1 106 0.029 2 gi|2583130|gb|AAB82639.1|(AC002387) putative non-LTR ... +1 92 0.046 4 gi|976174|gb|AAB48346.1|(L47181) reverse transcriptas... +1 98 0.050 1 gi|3746069|gb|AAC63844.1|(AC005311) putative non-LTR ... +1 111 0.059 2 gi|5001454|gb|AAD37021.1|AC007730_3(AC007730) putativ... +1 104 0.092 1 gi|3738337|gb|AAC63678.1|(AC005170) putative non-LTR ... +1 106 0.098 1 gi|12323627|gb|AAG51783.1|AC079679_3(AC079679) revers... +1 107 0.11 2 gi|7488318|pir||T01191RNA-directed DNA polymerase hom... +1 100 0.22 2 gi|4335720|gb|AAD17398.1|(AC006248) putative non-LTR ... +1 101 0.32 1 gi|7767672|gb|AAF69169.1|AC007915_21(AC007915) F27F5.... +1 96 0.36 2 gi|976284|gb|AAB48350.1|(L47194) reverse transcriptas... +1 90 0.38 1 gi|7485606|pir||T04018hypothetical protein F17A8.60 -... +1 88 0.39 3 gi|7267526|emb|CAB78008.1|(AL161513) putative protein... +1 98 0.47 1 gi|4522005|gb|AAD21778.1|(AC007069) putative non-LTR ... +1 99 0.61 1 gi|3785984|gb|AAC67331.1|(AC005560) putative non-LTR ... +1 98 0.64 1 gi|7484649|pir||T14619reverse transcriptase - beet re... +1 83 0.74 3 gi|11358077|pir||T47440hypothetical protein T18B22.50... +1 94 0.75 1 gi|4581169|gb|AAD24652.1|AC006220_8(AC006220) putativ... +1 95 0.76 1 gi|3004480|emb|CAA12932.1|(AJ228333) reverse transcri... +1 84 0.90 1 gi|7486147|pir||T04278hypothetical protein F25I24.40 ... +1 87 0.92 3 gi|7484447|pir||T14862reverse transcriptase - Norway ... +1 83 0.92 1 gi|2129713|pir||S65816RNA-directed DNA polymerase (EC... +1 82 0.97 1 gi|7486711|pir||T01893hypothetical protein F8M12.22 -... +1 87 0.995 3 gi|976280|gb|AAB48351.1|(L47191) reverse transcriptas... +1 81 0.996 1 gi|8778804|gb|AAF79812.1|AC020646_35(AC020646) T32E20... +1 86 0.997 1 gi|7488323|pir||T02730RNA-directed DNA polymerase hom... +1 91 0.999 1 gi|7484446|pir||T14861reverse transcriptase - Norway ... +1 80 0.999 1 gi|4006833|gb|AAC95175.1|(AC005970) putative non-LTR ... +1 90 0.9995 1 gi|7487278|pir||T00530hypothetical protein T20K24.11 ... +1 90 0.9997 1 gi|9758853|dbj|BAB09379.1|(AB010694) non-LTR retroele... +1 91 0.99994 2
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>gi|976178|gb|AAB48348.1| (L47183) reverse transcriptase [Arabidopsis thaliana] Length = 199 Frame 1 hits (HSPs): ______________________ __________________________________________________ Database sequence: | | | | | 199 0 50 100 150 Plus Strand HSPs: Score = 116 (40.8 bits), Expect = 0.00028, P = 0.00028 Identities = 28/84 (33%), Positives = 44/84 (52%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG FY RFW + G D+ + + + +F +N+T I +I +I R Sbjct: 4 PDGMTALFYQRFWDLTGPDLVKVVQNFHSSASFDERLNETNICLIPKIDRPRRMAEFRPI 63 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LCN +K++ S+VL+ RLK +L Sbjct: 64 SLCNVSYKVI--SKVLSSRLKKIL 85 >gi|2129715|pir||S65817 RNA-directed DNA polymerase (EC 2.7.7.49) (clone B3) - Arabidopsis thaliana retrotransposon Ta25 (fragment) Length = 184 Frame 1 hits (HSPs): _____________________ __________________________________________________ Database sequence: | | | | | 184 0 50 100 150 Plus Strand HSPs: Score = 102 (35.9 bits), Expect = 0.012, P = 0.012 Identities = 25/77 (32%), Positives = 41/77 (53%), Frame = +1 Query: 337 FYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TNLLCNGGF 516 FY RFW + G D+ + + + +F +N+T I +I +I R LCN + Sbjct: 5 FYQRFWDLTGPDLVKVVQNFHSSASFDERLNETNICLIPKIDRPRRMAEFRPISLCNVSY 64 Query: 517 KILFLSEVLAKRLKNVL 567 K++ S+VL+ RLK +L Sbjct: 65 KVI--SKVLSSRLKKIL 79 >gi|7485171|pir||G71420 hypothetical protein - Arabidopsis thaliana >gi|2244915|emb|CAB10337.1| (Z97339) reverse transcriptase like protein [Arabidopsis thaliana] >gi|7268307|emb|CAB78601.1| (AL161542) reverse transcriptase like protein [Arabidopsis thaliana] Length = 929 Frame 1 hits (HSPs): __ _____ __________________________________________________ Database sequence: | | | | | | | | 929 0 150 300 450 600 750 900 Plus Strand HSPs: Score = 110 (38.7 bits), Expect = 0.026, Sum P(2) = 0.026 Identities = 27/86 (31%), Positives = 43/86 (50%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ FY + W GE V + + G P S ND + ++ ++ R + Sbjct: 264 PDGYQPVFYQQCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPV 323 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573 LCN FKI+ ++++ RLKNV+ K Sbjct: 324 SLCNVLFKII--TKMMVIRLKNVISK 347 Score = 40 (14.1 bits), Expect = 0.026, Sum P(2) = 0.026 Identities = 8/14 (57%), Positives = 10/14 (71%), Frame = +1 Query: 88 LLLQEEAFWKQQSK 129 LL QEE W Q+S+ Sbjct: 143 LLHQEETLWFQKSR 156 >gi|4755191|gb|AAD29058.1|AC007018_6 (AC007018) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1229 Frame 1 hits (HSPs): _ _____ __________________________________________________ Database sequence: | | | | | | | | | | 1229 0 150 300 450 600 750 900 1050 1200 Plus Strand HSPs: Score = 106 (37.3 bits), Expect = 0.029, Sum P(2) = 0.029 Identities = 26/86 (30%), Positives = 45/86 (52%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDGF GFYH +W + DV + ++ FP +N+T I +I + + Sbjct: 343 PDGFTAGFYHSYWHIISTDVGREIRLFFTSKNFPRRMNETHIRLIPKDLGPRKVADYRPI 402 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573 LCN +KI+ ++++ KR++ +L K Sbjct: 403 ALCNIFYKIV--AKIMTKRMQLILPK 426 Score = 47 (16.5 bits), Expect = 0.029, Sum P(2) = 0.029 Identities = 8/11 (72%), Positives = 10/11 (90%), Frame = +1 Query: 100 EEAFWKQQSKV 132 EE FWKQ+S+V Sbjct: 227 EEQFWKQRSRV 237 >gi|2583130|gb|AAB82639.1| (AC002387) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1374 Frame 3 hits (HSPs): _ __ Frame 1 hits (HSPs): ___ ____ __________________________________________________ Database sequence: | | | | 1374 0 500 1000 Plus Strand HSPs: Score = 92 (32.4 bits), Expect = 0.047, Sum P(4) = 0.046 Identities = 25/84 (29%), Positives = 43/84 (51%), Frame = +1 Query: 316 PDGFNLGF-YHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*T 492 PDG N GF Y +FW G+ + + + G+ +N T I +I +I + + Sbjct: 448 PDGMN-GFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRP 506 Query: 493 NLLCNGGFKILFLSEVLAKRLKNVL 567 LCN +K++ +++A RLK +L Sbjct: 507 ISLCNVIYKVI--GKLMANRLKKIL 529 Score = 48 (16.9 bits), Expect = 0.047, Sum P(4) = 0.046 Identities = 21/47 (44%), Positives = 30/47 (63%), Frame = +1 Query: 4 RIQS-RFRDDIKRCKQKLEFNREREL--LTKLLLQE----EAFWKQQSKV 132 RIQ +F+ D KQ + F+R REL L K L QE E FW+++S++ Sbjct: 296 RIQELQFKLDAAT-KQ-IPFDR-RELARLKKELSQEYNNEEQFWQEKSRI 342 Score = 45 (15.8 bits), Expect = 0.047, Sum P(4) = 0.046 Identities = 12/44 (27%), Positives = 24/44 (54%), Frame = +3 Query: 180 LFADGNGNHGVV-IDKVRSIITTDDNLKLVRPFMK*ELKEATFA 308 LFA + + V ++ + +++ N L+ P K E++ ATF+ Sbjct: 396 LFASEDVGYTVEELENLTPLVSDQMNNNLLAPITKEEVQRATFS 439 Score = 41 (14.4 bits), Expect = 0.047, Sum P(4) = 0.046 Identities = 6/11 (54%), Positives = 10/11 (90%), Frame = +3 Query: 135 LKSGDMNTKFF 167 +++GD NTK+F Sbjct: 345 MRNGDRNTKYF 355 >gi|976174|gb|AAB48346.1| (L47181) reverse transcriptase [Arabidopsis thaliana] Length = 199 Frame 1 hits (HSPs): ______________________ __________________________________________________ Database sequence: | | | | | 199 0 50 100 150 Plus Strand HSPs: Score = 98 (34.5 bits), Expect = 0.051, P = 0.050 Identities = 26/84 (30%), Positives = 36/84 (42%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG FYH W + G DV + + +N T I +I +I Sbjct: 4 PDGXXAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPI 63 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LC +KI+ S++L KRLK L Sbjct: 64 SLCTASYKII--SKILIKRLKQCL 85 >gi|3746069|gb|AAC63844.1| (AC005311) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1231 Frame 1 hits (HSPs): __ _____ __________________________________________________ Database sequence: | | | | | | | | | | 1231 0 150 300 450 600 750 900 1050 1200 Plus Strand HSPs: Score = 111 (39.1 bits), Expect = 0.061, Sum P(2) = 0.059 Identities = 27/86 (31%), Positives = 44/86 (51%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ FY + W G V + + G P+S ND + +I ++ R ++ Sbjct: 312 PDGYQPVFYQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPV 371 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573 LCN FKI+ ++++ RLKNV+ K Sbjct: 372 SLCNVLFKII--TKMMVTRLKNVISK 395 Score = 38 (13.4 bits), Expect = 0.061, Sum P(2) = 0.059 Identities = 10/25 (40%), Positives = 15/25 (60%), Frame = +1 Query: 64 RERELLTKL---LLQEEAFWKQQSK 129 +E LL ++ L QEE W Q+S+ Sbjct: 180 KEEVLLKEMDLVLEQEETLWFQKSR 204 >gi|5001454|gb|AAD37021.1|AC007730_3 (AC007730) putative non-LTR retrolelement reverse transcriptase [Arabidopsis thaliana] Length = 732 Frame 1 hits (HSPs): _______ __________________________________________________ Database sequence: | | | | | | 732 0 150 300 450 600 Plus Strand HSPs: Score = 104 (36.6 bits), Expect = 0.096, P = 0.092 Identities = 27/86 (31%), Positives = 40/86 (46%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDGF FY W + G+ V + + A G P ND + +I ++ R + Sbjct: 9 PDGFQPVFYQDCWDIVGDSVSRFVLDFFASGKLPEGTNDAIVVLIAKVLKPERITQFRPI 68 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573 LCN FK + ++ L RLK V+ K Sbjct: 69 SLCNVLFKTI--TKTLVMRLKRVISK 92 >gi|3738337|gb|AAC63678.1| (AC005170) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1216 Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | | | | || 1216 0 150 300 450 600 750 900 1050 1200 Plus Strand HSPs: Score = 106 (37.3 bits), Expect = 0.10, P = 0.098 Identities = 28/87 (32%), Positives = 45/87 (51%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ FY W + G++V A + A+G P VN T +A+I + + + Sbjct: 194 PDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKKKEAREIKDYRPI 253 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576 CN +K + S++LA RLK +L K+ Sbjct: 254 SCCNVLYKAI--SKILANRLKRILPKF 278 >gi|12323627|gb|AAG51783.1|AC079679_3 (AC079679) reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana] Length = 1142 Frame 3 hits (HSPs): __ Frame 1 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | | | | | | 1142 0 150 300 450 600 750 900 1050 Plus Strand HSPs: Score = 107 (37.7 bits), Expect = 0.12, Sum P(2) = 0.11 Identities = 27/84 (32%), Positives = 41/84 (48%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG F+ + W + D+ +L EG F +N T I +I + R Sbjct: 232 PDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPTRMTELRPI 291 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LCN G+K++ S++L +RLK VL Sbjct: 292 SLCNVGYKVI--SKILCQRLKTVL 313 Score = 39 (13.7 bits), Expect = 0.12, Sum P(2) = 0.11 Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +3 Query: 135 LKSGDMNTKFF 167 +K GD N+KFF Sbjct: 129 MKLGDNNSKFF 139 >gi|7488318|pir||T01191 RNA-directed DNA polymerase homolog F21E10.5 - Arabidopsis thaliana >gi|3047086|gb|AAC13599.1| (AF058914) similar to reverse transcriptase (Pfam: transcript_fact.hmm, score: 72.31) [Arabidopsis thaliana] Length = 928 Frame 2 hits (HSPs): __ Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | | | | 928 0 150 300 450 600 750 900 Plus Strand HSPs: Score = 100 (35.2 bits), Expect = 0.25, Sum P(2) = 0.22 Identities = 26/87 (29%), Positives = 44/87 (50%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ FY W + G + A + A+G P +N T +A+I + + + Sbjct: 361 PDGYTAEFYKGAWNIIGAEFILAIQSFFAKGFLPKGINSTILALIPKKKEAKEMKDYRPI 420 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576 CN +K++ S+++A RLK VL K+ Sbjct: 421 SCCNVLYKVI--SKIIANRLKLVLPKF 445 Score = 42 (14.8 bits), Expect = 0.25, Sum P(2) = 0.22 Identities = 8/23 (34%), Positives = 12/23 (52%), Frame = +2 Query: 32 LRGVSRSLSLIEKGSCLRNFSCK 100 L+ RS S+ E G C + C+ Sbjct: 100 LQSFPRSYSVFEAGGCSDHLRCR 122 >gi|4335720|gb|AAD17398.1| (AC006248) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1225 Frame 1 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | | | | | | | 1225 0 150 300 450 600 750 900 1050 1200 Plus Strand HSPs: Score = 101 (35.6 bits), Expect = 0.39, P = 0.32 Identities = 25/84 (29%), Positives = 42/84 (50%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG FY +W + G D+ + + + G F +N+T I +I + + Sbjct: 395 PDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTERPRKMAEFRPI 454 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LCN +K++ S+VL+ RLK +L Sbjct: 455 SLCNVSYKVI--SKVLSSRLKRLL 476 >gi|7767672|gb|AAF69169.1|AC007915_21 (AC007915) F27F5.21 [Arabidopsis thaliana] Length = 1023 Frame 1 hits (HSPs): ___ _____ __________________________________________________ Database sequence: | | | | | | | | 1023 0 150 300 450 600 750 900 Plus Strand HSPs: Score = 96 (33.8 bits), Expect = 0.45, Sum P(2) = 0.36 Identities = 26/84 (30%), Positives = 40/84 (47%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG F+ + W D+ +L +G F +N T I +I + R Sbjct: 298 PDGMTALFFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPI 357 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LCN G+KI+ S++L +RLK +L Sbjct: 358 SLCNVGYKII--SKILCQRLKKIL 379 Score = 45 (15.8 bits), Expect = 0.45, Sum P(2) = 0.36 Identities = 13/47 (27%), Positives = 25/47 (53%), Frame = +1 Query: 7 IQSRFRDDIKRCKQKLEFNRERELLTKLLLQEEAFWKQQSK-VGLKVG 147 I + RDD + ++ + L + + EE +W Q+S+ + +KVG Sbjct: 154 IDAAQRDDSRTSEEITDLTIR---LKEAYIDEEQYWYQKSRSLWMKVG 198 >gi|976284|gb|AAB48350.1| (L47194) reverse transcriptase [Arabidopsis thaliana] Length = 198 Frame 1 hits (HSPs): ______________________ __________________________________________________ Database sequence: | | | | | 198 0 50 100 150 Plus Strand HSPs: Score = 90 (31.7 bits), Expect = 0.47, P = 0.38 Identities = 23/86 (26%), Positives = 39/86 (45%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG FY W + G V + + +G P ND +A+I ++ + + Sbjct: 4 PDGIQAVFYQDSWDVVGTSVTKFVLDFFRDGVLPEKTNDVLVALIPKVLKPEKITQFRAI 63 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573 LCN FK + ++ + R+K V+ K Sbjct: 64 SLCNVLFKAI--TKTMVGRMKGVMQK 87 >gi|7485606|pir||T04018 hypothetical protein F17A8.60 - Arabidopsis thaliana >gi|4538901|emb|CAB39638.1| (AL049482) RNA-directed DNA polymerase-like protein [Arabidopsis thaliana] >gi|7267666|emb|CAB78094.1| (AL161515) RNA-directed DNA polymerase-like protein [Arabidopsis thaliana] Length = 1274 Frame 3 hits (HSPs): __ Frame 1 hits (HSPs): __ ____ __________________________________________________ Database sequence: | | | | 1274 0 500 1000 Plus Strand HSPs: Score = 88 (31.0 bits), Expect = 0.49, Sum P(3) = 0.39 Identities = 21/81 (25%), Positives = 41/81 (50%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDGF+ F+H +W + DV + + + +N+T + +I +I + Sbjct: 389 PDGFSASFFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPI 448 Query: 496 LLCNGGFKILFLSEVLAKRLK 558 LCN +KI+ +++L +RL+ Sbjct: 449 ALCNVQYKIV--AKILTRRLQ 467 Score = 49 (17.2 bits), Expect = 0.49, Sum P(3) = 0.39 Identities = 9/12 (75%), Positives = 10/12 (83%), Frame = +1 Query: 97 QEEAFWKQQSKV 132 QEE FWKQ S+V Sbjct: 272 QEELFWKQWSRV 283 Score = 44 (15.5 bits), Expect = 0.49, Sum P(3) = 0.39 Identities = 13/46 (28%), Positives = 25/46 (54%), Frame = +3 Query: 174 EGLFADGNGNHGVVIDKVRS-IITTDDNLKLVRPFMK*ELKEATFA 308 + +F N + V+ + S II++ N +L++ E+KEA F+ Sbjct: 335 QNIFTTSNNSDLQVVQEALSPIISSHCNEELIKISSLLEIKEALFS 380 >gi|7267526|emb|CAB78008.1| (AL161513) putative protein [Arabidopsis thaliana] >gi|7321072|emb|CAB82119.1| (AL161813) putative protein [Arabidopsis thaliana] Length = 947 Frame 1 hits (HSPs): ______ __________________________________________________ Database sequence: | | | | | | | | 947 0 150 300 450 600 750 900 Plus Strand HSPs: Score = 98 (34.5 bits), Expect = 0.63, P = 0.47 Identities = 24/86 (27%), Positives = 41/86 (47%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ FY W + G V + + + G P ND + +I ++ R + Sbjct: 206 PDGYQPIFYQSCWEVVGNSVIRFALDFFSSGILPPQTNDALVVLIPKVPKPERMNQFRPI 265 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDK 573 LCN FK++ ++++ RLK V+ K Sbjct: 266 SLCNAIFKMI--TKMMVLRLKKVIGK 289 >gi|4522005|gb|AAD21778.1| (AC007069) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1715 Frame 1 hits (HSPs): ___ __________________________________________________ Database sequence: | | | | | 1715 0 500 1000 1500 Plus Strand HSPs: Score = 99 (34.8 bits), Expect = 0.94, P = 0.61 Identities = 26/83 (31%), Positives = 36/83 (43%), Frame = +1 Query: 319 DGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TNL 498 DGF FYH W + G DV + + +N T I +I +I Sbjct: 811 DGFTAAFYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPIS 870 Query: 499 LCNGGFKILFLSEVLAKRLKNVL 567 LC +KI+ S++L KRLK L Sbjct: 871 LCTASYKII--SKILIKRLKQCL 891 >gi|3785984|gb|AAC67331.1| (AC005560) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1449 Frame 1 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | 1449 0 500 1000 Plus Strand HSPs: Score = 98 (34.5 bits), Expect = 1.0, P = 0.64 Identities = 26/84 (30%), Positives = 43/84 (51%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ FY R W + G + A + +G P VN T +A+I + + + Sbjct: 888 PDGYTSEFYKRAWDIIGAEFVLAVKSFFEKGFLPKGVNTTILALIPKKLEAKEMKDYRPI 947 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 CN +K++ S+++A RLK+VL Sbjct: 948 SCCNVIYKVI--SKIIANRLKHVL 969 >gi|7484649|pir||T14619 reverse transcriptase - beet retrotransposon (fragment) >gi|2462134|emb|CAA73798.1| (Y13368) reverse transcriptase [Beta vulgaris] Length = 507 Frame 3 hits (HSPs): __ Frame 1 hits (HSPs): __ _________ __________________________________________________ Database sequence: | | | | | 507 0 150 300 450 Plus Strand HSPs: Score = 83 (29.2 bits), Expect = 1.4, Sum P(3) = 0.74 Identities = 23/85 (27%), Positives = 42/85 (49%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDGFN F W + +D+++ + A G+ P N IA+I + ++ R Sbjct: 318 PDGFNFKFIKSSWEVIKKDIYKIVEDFWASGSLPHGCNSAFIALIPKT----QHPRGFNE 373 Query: 496 L--LCNGGFKILFLSEVLAKRLKNVLD 570 + G ++++LA+RL+ V+D Sbjct: 374 FRPISMVGCLYKIIAKILARRLQRVMD 400 Score = 41 (14.4 bits), Expect = 1.4, Sum P(3) = 0.74 Identities = 6/12 (50%), Positives = 10/12 (83%), Frame = +1 Query: 25 DDIKRCKQKLEF 60 D+IK C++K+ F Sbjct: 161 DNIKHCEEKIHF 172 Score = 40 (14.1 bits), Expect = 1.4, Sum P(3) = 0.74 Identities = 6/11 (54%), Positives = 9/11 (81%), Frame = +3 Query: 135 LKSGDMNTKFF 167 +K GD NT++F Sbjct: 217 IKEGDSNTRYF 227 >gi|11358077|pir||T47440 hypothetical protein T18B22.50 - Arabidopsis thaliana >gi|6967113|emb|CAB72467.1| (AL138652) putative protein [Arabidopsis thaliana] Length = 762 Frame 1 hits (HSPs): _______ __________________________________________________ Database sequence: | | | | | || 762 0 150 300 450 600 750 Plus Strand HSPs: Score = 94 (33.1 bits), Expect = 1.4, P = 0.75 Identities = 27/87 (31%), Positives = 43/87 (49%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDGF F+ W + G + A + A G P VN T +A+I + S + Sbjct: 26 PDGFTSEFFKESWEILGPEFILAIQSFFALGFLPKGVNSTILALIPKKLESKEMKDYRPI 85 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576 CN +K++ S++LA RLK +L ++ Sbjct: 86 SCCNVMYKVI--SKILANRLKLLLPQF 110 >gi|4581169|gb|AAD24652.1|AC006220_8 (AC006220) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 977 Frame 1 hits (HSPs): _____ __________________________________________________ Database sequence: | | | | | | | | 977 0 150 300 450 600 750 900 Plus Strand HSPs: Score = 95 (33.4 bits), Expect = 1.4, P = 0.76 Identities = 25/84 (29%), Positives = 41/84 (48%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ FY W + GE+ A + +G P VN T +A+I + + Sbjct: 588 PDGYRTEFYKATWDIIGEEFVLAIKSFFEKGFLPKGVNSTILALIPKKLEEIEMKDYRPI 647 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 CN +K++ S+++A RLK +L Sbjct: 648 SCCNVIYKVI--SKIIANRLKRLL 669 >gi|3004480|emb|CAA12932.1| (AJ228333) reverse transcriptase [Pinus elliottii] Length = 194 Frame 1 hits (HSPs): ______________________ __________________________________________________ Database sequence: | | | | | 194 0 50 100 150 Plus Strand HSPs: Score = 84 (29.6 bits), Expect = 2.3, P = 0.90 Identities = 25/84 (29%), Positives = 42/84 (50%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG + FY W + D+++ S+N T IA++ ++ + E+ Sbjct: 4 PDGITINFYKVCWEIVKNDIWEIVEDSRRSKTILKSLNSTFIALVPKVEEAHTPEKFRPI 63 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LCN +KI+ S+V+A RLK +L Sbjct: 64 ALCNVIYKII--SKVIANRLKIIL 85 >gi|7486147|pir||T04278 hypothetical protein F25I24.40 - Arabidopsis thaliana >gi|4539357|emb|CAB40051.1| (AL049525) putative protein [Arabidopsis thaliana] >gi|7267781|emb|CAB81184.1| (AL161518) putative protein [Arabidopsis thaliana] Length = 1294 Frame 3 hits (HSPs): _ Frame 1 hits (HSPs): ___ ____ __________________________________________________ Database sequence: | | | | 1294 0 500 1000 Plus Strand HSPs: Score = 87 (30.6 bits), Expect = 2.5, Sum P(3) = 0.92 Identities = 27/85 (31%), Positives = 38/85 (44%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG FY W + G DV + ++ S+N T I +I +I Sbjct: 810 PDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPI 869 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLD 570 LCN +KI+ S+ L +RLK LD Sbjct: 870 ALCNVLYKII--SKCLVERLKGHLD 892 Score = 45 (15.8 bits), Expect = 2.5, Sum P(3) = 0.92 Identities = 10/33 (30%), Positives = 20/33 (60%), Frame = +1 Query: 31 IKRCKQKLEFNRERELLTKLLLQEEAFWKQQSK 129 + R +++ + +REL T EE +W+Q+S+ Sbjct: 672 VNRTERRTISHIQREL-TVAYRDEERYWQQKSR 703 Score = 42 (14.8 bits), Expect = 2.5, Sum P(3) = 0.92 Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +3 Query: 135 LKSGDMNTKFF 167 +K GD NT+FF Sbjct: 707 MKEGDRNTEFF 717 >gi|7484447|pir||T14862 reverse transcriptase - Norway spruce retrotransposon Ty1-copia like (fragment) >gi|2950370|emb|CAA11923.1| (AJ224372) Reverse Transcriptase [Picea abies] Length = 182 Frame 1 hits (HSPs): ________________________ __________________________________________________ Database sequence: | | | | | 182 0 50 100 150 Plus Strand HSPs: Score = 83 (29.2 bits), Expect = 2.6, P = 0.92 Identities = 26/84 (30%), Positives = 43/84 (51%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDGF F+H W M +V++ A G ++N T I +I + + R + Sbjct: 4 PDGFTNDFFHHCWAMIRHEVWEILEDSRAMGQVLQALNATFITLIPKEGNALRPAQYRPI 63 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LCN +K+L ++V+A+R K +L Sbjct: 64 ALCNVIYKLL--TKVIARRFKPLL 85 >gi|2129713|pir||S65816 RNA-directed DNA polymerase (EC 2.7.7.49) (clone B2) - Arabidopsis thaliana retrotransposon Ta23 (fragment) Length = 184 Frame 1 hits (HSPs): _____________________ Annotated Domains: ___ __________________________________________________ Database sequence: | | | | | 184 0 50 100 150 __________________ Annotated Domains: PROSITE ZINC_PROTEASE: Neutral zinc metallopepti 101..110 __________________ Plus Strand HSPs: Score = 82 (28.9 bits), Expect = 3.5, P = 0.97 Identities = 23/77 (29%), Positives = 33/77 (42%), Frame = +1 Query: 337 FYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TNLLCNGGF 516 FYH W + G DV + + +N T I +I +I LC + Sbjct: 5 FYHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASY 64 Query: 517 KILFLSEVLAKRLKNVL 567 KI+ S++L KRLK L Sbjct: 65 KII--SKILIKRLKQCL 79 >gi|7486711|pir||T01893 hypothetical protein F8M12.22 - Arabidopsis thaliana >gi|3513745|gb|AAC33961.1| (AF080118) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 42.57) [Arabidopsis thaliana] Length = 1662 Frame 3 hits (HSPs): __ Frame 1 hits (HSPs): __ ____ __________________________________________________ Database sequence: | | | | | 1662 0 500 1000 1500 Plus Strand HSPs: Score = 87 (30.6 bits), Expect = 5.3, Sum P(3) = 0.99 Identities = 27/85 (31%), Positives = 38/85 (44%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG FY W + G DV + ++ S+N T I +I +I Sbjct: 830 PDGLTARFYKSCWEIVGPDVIKEVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPI 889 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLD 570 LCN +KI+ S+ L +RLK LD Sbjct: 890 ALCNVLYKII--SKCLVERLKGHLD 912 Score = 45 (15.8 bits), Expect = 5.3, Sum P(3) = 0.99 Identities = 10/33 (30%), Positives = 20/33 (60%), Frame = +1 Query: 31 IKRCKQKLEFNRERELLTKLLLQEEAFWKQQSK 129 + R +++ + +REL T EE +W+Q+S+ Sbjct: 692 VNRTERRTISHIQREL-TVAYRDEERYWQQKSR 723 Score = 42 (14.8 bits), Expect = 5.3, Sum P(3) = 0.99 Identities = 7/11 (63%), Positives = 9/11 (81%), Frame = +3 Query: 135 LKSGDMNTKFF 167 +K GD NT+FF Sbjct: 727 MKEGDRNTEFF 737 >gi|976280|gb|AAB48351.1| (L47191) reverse transcriptase [Arabidopsis thaliana] Length = 199 Frame 1 hits (HSPs): ______________________ __________________________________________________ Database sequence: | | | | | 199 0 50 100 150 Plus Strand HSPs: Score = 81 (28.5 bits), Expect = 5.6, P = 1.0 Identities = 27/84 (32%), Positives = 35/84 (41%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG FY +FW V + EG S+N T I +I + S Sbjct: 4 PDGITAAFYQQFWPDVKNAVITEIQRFFQEGIMRDSMNHTNICLIPKKNVSTLMADFRPI 63 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LCN +KI+ S+ L RLK L Sbjct: 64 ALCNVSYKII--SKTLVDRLKQHL 85 >gi|8778804|gb|AAF79812.1|AC020646_35 (AC020646) T32E20.6 [Arabidopsis thaliana] Length = 458 Frame 1 hits (HSPs): __________ __________________________________________________ Database sequence: | | | || 458 0 150 300 450 Plus Strand HSPs: Score = 86 (30.3 bits), Expect = 5.9, P = 1.0 Identities = 22/84 (26%), Positives = 41/84 (48%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PD + + FY W + G++ A + +G P ++N T +A+I + + + Sbjct: 214 PDSYTMEFYKSTWDIIGKEFILAIKSFFVKGFLPKAINSTILALIPKKATTNEMKDYRPI 273 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 CN FK++ +++A LK VL Sbjct: 274 SCCNVIFKVIL--KIIANPLKRVL 295 >gi|7488323|pir||T02730 RNA-directed DNA polymerase homolog T9I4.6 - Arabidopsis thaliana >gi|3461840|gb|AAC33226.1| (AC005315) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1529 Frame 1 hits (HSPs): ___ __________________________________________________ Database sequence: | | | || 1529 0 500 1000 1500 Plus Strand HSPs: Score = 91 (32.0 bits), Expect = 6.7, P = 1.0 Identities = 25/90 (27%), Positives = 44/90 (48%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ F+ W + G D A + +G P +N T +A+I + + + Sbjct: 770 PDGYTSEFFKATWSLTGPDFIAAIQSFFVKGFLPKGLNATILALIPKKDEAIEMKDYRPI 829 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKWSLR 585 CN +K++ S++LA RLK +L + L+ Sbjct: 830 SCCNVLYKVI--SKILANRLKLLLPSFILQ 857 >gi|7484446|pir||T14861 reverse transcriptase - Norway spruce retrotransposon Ty1-copia like (fragment) >gi|2950366|emb|CAA11922.1| (AJ224369) Reverse Transcriptase [Picea abies] Length = 194 Frame 1 hits (HSPs): ______________________ __________________________________________________ Database sequence: | | | | | 194 0 50 100 150 Plus Strand HSPs: Score = 80 (28.2 bits), Expect = 6.9, P = 1.0 Identities = 24/84 (28%), Positives = 41/84 (48%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDGF + F+H W + +DV++ G + N T + +I + + Sbjct: 4 PDGFTMDFFHHCWDIIRKDVWEVVEESHTSGQVLQAFNATFLTLIPKEEWVTNPKHFRPI 63 Query: 496 LLCNGGFKILFLSEVLAKRLKNVL 567 LCN +KI+ ++V+A RLK +L Sbjct: 64 ALCNVIYKII--TKVIANRLKPIL 85 >gi|4006833|gb|AAC95175.1| (AC005970) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1352 Frame 1 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | 1352 0 500 1000 Plus Strand HSPs: Score = 90 (31.7 bits), Expect = 7.6, P = 1.0 Identities = 27/84 (32%), Positives = 45/84 (53%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ + F+ W + G D+ A + +G P +N T +A+I S ++E S Sbjct: 620 PDGYTVEFFKTAWPVLGRDLVIAIQSFFLKGFLPKGINTTILALI-----SKKHEVSGMK 674 Query: 496 -----LLCNGGFKILFLSEVLAKRLKNVL 567 CN +KI+ S+++A RLK +L Sbjct: 675 DYRPISCCNVLYKIV--SKLMANRLKEIL 701 >gi|7487278|pir||T00530 hypothetical protein T20K24.11 - Arabidopsis thaliana >gi|3176712|gb|AAD12028.1| (AC002392) putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1447 Frame 1 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | 1447 0 500 1000 Plus Strand HSPs: Score = 90 (31.7 bits), Expect = 8.2, P = 1.0 Identities = 25/87 (28%), Positives = 43/87 (49%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDGF F+ W + G + A + A+G P +N T +A+I + + + Sbjct: 881 PDGFTSEFFKATWEILGNEFILAIQSFFAKGFLPKGINTTILALIPKKKEAKEMKDYRPI 940 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576 CN +K++ S+++A RLK V K+ Sbjct: 941 SCCNVIYKVI--SKIIANRLKLVPPKF 965 >gi|9758853|dbj|BAB09379.1| (AB010694) non-LTR retroelement reverse transcriptase-like protein [Arabidopsis thaliana] Length = 1223 Frame 2 hits (HSPs): __ Frame 1 hits (HSPs): ____ __________________________________________________ Database sequence: | | | | | | | | || 1223 0 150 300 450 600 750 900 1050 1200 Plus Strand HSPs: Score = 91 (32.0 bits), Expect = 9.7, Sum P(2) = 1.0 Identities = 24/87 (27%), Positives = 44/87 (50%), Frame = +1 Query: 316 PDGFNLGFYHRFWGMCGEDVFQACCMWLAEGAFPSSVNDTTIAIILEI**S*RYERS*TN 495 PDG+ F+ W + G++ A + +G P +N T +A+I + + + Sbjct: 473 PDGYTSEFFKATWEIIGDEFTLAVQSFFTKGFLPKGINSTILALIPKKTEAREMKDYRPI 532 Query: 496 LLCNGGFKILFLSEVLAKRLKNVLDKW 576 CN +K++ S+++A RLK VL K+ Sbjct: 533 SCCNVLYKVI--SKIIANRLKLVLPKF 557 Score = 39 (13.7 bits), Expect = 9.7, Sum P(2) = 1.0 Identities = 7/19 (36%), Positives = 11/19 (57%), Frame = +2 Query: 44 SRSLSLIEKGSCLRNFSCK 100 S+S S+ E G C + C+ Sbjct: 216 SQSYSVFEAGGCSDHLRCR 234 Parameters: filter=none matrix=BLOSUM62 V=50 B=50 E=10 gi H=1 sort_by_pvalue echofilter ctxfactor=6.00 Query ----- As Used ----- ----- Computed ---- Frame MatID Matrix name Lambda K H Lambda K H Std. 0 BLOSUM62 0.318 0.135 0.401 +3 0 BLOSUM62 0.318 0.135 0.401 0.369 0.173 0.632 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +2 0 BLOSUM62 0.318 0.135 0.401 0.351 0.159 0.632 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a +1 0 BLOSUM62 0.318 0.135 0.401 0.352 0.157 0.547 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -1 0 BLOSUM62 0.318 0.135 0.401 0.348 0.152 0.492 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -2 0 BLOSUM62 0.318 0.135 0.401 0.353 0.157 0.563 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a -3 0 BLOSUM62 0.318 0.135 0.401 0.354 0.160 0.575 Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a Query Frame MatID Length Eff.Length E S W T X E2 S2 +3 0 217 217 10. 77 3 12 22 0.10 35 32 0.12 38 +2 0 217 217 10. 77 3 12 22 0.10 35 32 0.12 38 +1 0 217 217 10. 77 3 12 22 0.10 35 32 0.12 38 -1 0 217 217 10. 77 3 12 22 0.10 35 32 0.12 38 -2 0 217 217 10. 77 3 12 22 0.10 35 32 0.12 38 -3 0 217 217 10. 77 3 12 22 0.10 35 32 0.12 38 Statistics: Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr Title: nr Release date: unknown Posted date: 4:06 PM CST Feb 28, 2001 Format: BLAST # of letters in database: 197,782,623 # of sequences in database: 625,274 # of database sequences satisfying E: 33 No. of states in DFA: 597 (59 KB) Total size of DFA: 237 KB (256 KB) Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00 No. of threads or processors used: 6 Search cpu time: 215.66u 1.07s 216.73t Elapsed: 00:01:14 Total cpu time: 215.69u 1.11s 216.80t Elapsed: 00:01:14 Start: Wed Jan 16 16:55:20 2002 End: Wed Jan 16 16:56:34 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000