R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 84 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7485009|pir||T00801 homeobox protein homolog F24L7.19 - Arabidopsis
thaliana >gi|2914706|gb|AAC04496.1| (AC003974) putative
synaptobrevin [Arabidopsis thaliana]
Length = 220
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 975 (343.2 bits), Expect = 3.6e-97, P = 3.6e-97
Identities = 188/209 (89%), Positives = 198/209 (94%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 220
MGQQ+LIYSFVARGTVIL EYTEF GNFT+VAAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 221 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 400
NGFTYCVVAVES GRQIP+AFLER+KEDF K+Y GGKA TA A+SLNREFG KLKE MQY
Sbjct: 61 NGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQY 120
Query: 401 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 580
CVDHP+EISKLAKVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QG
Sbjct: 121 CVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQG 180
Query: 581 TKIRRKMWFQNMKIKLIVLGIIIALILII 667
TKIRRKMWF+NMKIKLIVLGIII LILII
Sbjct: 181 TKIRRKMWFENMKIKLIVLGIIITLILII 209
>gi|2924792|gb|AAC04921.1| (AC002334) putative synaptobrevin [Arabidopsis
thaliana]
Length = 221
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 963 (339.0 bits), Expect = 6.7e-96, P = 6.7e-96
Identities = 185/209 (88%), Positives = 199/209 (95%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 220
M QQSLIYSFVARGTVIL E+T+F GNFTS+AAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 221 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 400
NGFTYCVVAV+SAGRQIP+AFLER+KEDF K+Y GGKAATA A+SLN+EFG KLKE MQY
Sbjct: 61 NGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120
Query: 401 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 580
C+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QG
Sbjct: 121 CMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQG 180
Query: 581 TKIRRKMWFQNMKIKLIVLGIIIALILII 667
T++RRKMWFQNMKIKLIVL IIIALILII
Sbjct: 181 TQMRRKMWFQNMKIKLIVLAIIIALILII 209
>gi|1174498|sp|P47192|SYBR_ARATH SYNAPTOBREVIN-RELATED PROTEIN
>gi|600710|gb|AAA56991.1| (M90418) formerly called HAT24;
synaptobrevin-related protein [Arabidopsis thaliana]
Length = 221
Frame 2 hits (HSPs): ________________________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00417A: Synaptobrevin proteins. 130..157
BLOCKS BL00417B: Synaptobrevin proteins. 158..211
DOMO DM08193: 1..107
DOMO DM00708: SYNAPTOBREVIN 109..214
Entrez Domain: CYTOPLASMIC (PROBABLE). 1..196
Entrez Transmembrane region: POTENTIAL. 197..217
Entrez Domain: VESICULAR (PROBABLE). 218..221
PFAM synaptobrevin: Synaptobrevin 118..209
PRINTS SYNAPTOBREVN1: Synaptobrevin motif I - 3 135..154
PRINTS SYNAPTOBREVN2: Synaptobrevin motif II - 155..174
PRINTS SYNAPTOBREVN3: Synaptobrevin motif III - 191..210
PRODOM PD008038: 1..61
PRODOM PD010478: 63..128
PRODOM PD001229: SYB(4) SYB1(3) SYB2(3) 130..193
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 148..167
__________________
Plus Strand HSPs:
Score = 955 (336.2 bits), Expect = 4.7e-95, P = 4.7e-95
Identities = 184/209 (88%), Positives = 198/209 (94%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 220
M QQSLIYSFVARGTVIL E+T+F GNFTS+AAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 221 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 400
NGFTYCVVAV+SAGRQIP+AFLER+KEDF K+Y GGKAATA A+SLN+EFG KLKE MQY
Sbjct: 61 NGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120
Query: 401 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 580
C+ HP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QG
Sbjct: 121 CMAHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQG 180
Query: 581 TKIRRKMWFQNMKIKLIVLGIIIALILII 667
T++RRKMWFQNMKIKLIVL IIIALILII
Sbjct: 181 TQMRRKMWFQNMKIKLIVLAIIIALILII 209
>gi|4090884|gb|AAC98905.1| (AF025333) vesicle-associated membrane protein 7B;
synaptobrevin 7B [Arabidopsis thaliana]
Length = 219
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 943 (332.0 bits), Expect = 8.8e-94, P = 8.8e-94
Identities = 181/209 (86%), Positives = 197/209 (94%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 220
M QQSLIYSFVARGTVIL E+T+F GNFTS+AAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 221 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 400
+GFTYCVVAV+SAGRQIP++FLER+KEDF K+Y GGKAATA A+SLN+EFG KLKE MQY
Sbjct: 61 DGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120
Query: 401 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 580
C+DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR G
Sbjct: 121 CMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTG 180
Query: 581 TKIRRKMWFQNMKIKLIVLGIIIALILII 667
T++RRKMW QNMKIKLIVL IIIALILII
Sbjct: 181 TQMRRKMWLQNMKIKLIVLAIIIALILII 209
>gi|7211989|gb|AAF40460.1|AC004809_18 (AC004809) Strong similarity to the
synaptobrevin homolog F25I18.14 gi|2924792 from A. thaliana on BAC
gb|AC002334. [Arabidopsis thaliana]
Length = 229
Frame 2 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | | | | | 229
0 50 100 150 200
Plus Strand HSPs:
Score = 943 (332.0 bits), Expect = 8.8e-94, P = 8.8e-94
Identities = 184/218 (84%), Positives = 198/218 (90%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 220
MGQQSLIYSFVARGTVILAEYTEF GNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYL D
Sbjct: 1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLAD 60
Query: 221 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 400
NGFTYCVV +ESAGRQIP+AFLER+KEDF K+Y GGKA+TA A+SLN+EFG KLKE MQY
Sbjct: 61 NGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQY 120
Query: 401 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ-------- 556
C DHPEEISKL+KVKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ
Sbjct: 121 CADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQVNNNHISN 180
Query: 557 -AQDFRQQGTKIRRKMWFQNMKIKLIVLGIIIALILII 667
AQDFR QGTK++RK+WF+NMKIKLIV GII+ALILII
Sbjct: 181 TAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILII 218
>gi|11358869|pir||T47589 synaptobrevin-like protein - Arabidopsis thaliana
>gi|6822076|emb|CAB71004.1| (AL132957) synaptobrevin-like protein
[Arabidopsis thaliana]
Length = 240
Frame 2 hits (HSPs): ____________________ ________________________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 393 (138.3 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 71/109 (65%), Positives = 96/109 (88%), Frame = +2
Query: 341 AAAHSLNREFGPKLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 520
+ A++L+REFGP LKE MQYC+ HPEE+SKL+K+KAQ++EVKG+MM+NIEKVLDRGEKIE
Sbjct: 120 SVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIE 179
Query: 521 LLVDKTENLRSQAQDFRQQGTKIRRKMWFQNMKIKLIVLGIIIALILII 667
LLVDKTENL+ QA F++QG ++RRKMW Q++++KL+V G + + ILI+
Sbjct: 180 LLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIV 228
Score = 358 (126.0 bits), Expect = 1.8e-71, Sum P(2) = 1.8e-71
Identities = 61/93 (65%), Positives = 81/93 (87%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 220
M Q+ LIYSFVA+GTV+LAE+T ++GNF+++A QCLQKLP++++K+TY+CDGHTFN+LVD
Sbjct: 1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60
Query: 221 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKY 319
NGF + VVA ES GR +P FLER+KEDF K+Y
Sbjct: 61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRY 93
>gi|2924793|gb|AAC04922.1| (AC002334) putative synaptobrevin [Arabidopsis
thaliana]
Length = 212
Frame 2 hits (HSPs): _______________________________________
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 212
0 50 100 150 200
Plus Strand HSPs:
Score = 651 (229.2 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
Identities = 125/163 (76%), Positives = 141/163 (86%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 220
M QQSL YSF+ARGTVIL E+T+F GNFTSVAAQ L+ LPSSNNKFTYNCDGHTFN LV+
Sbjct: 1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVE 60
Query: 221 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 400
NGFTYCVVAV+SAGR+IP+AFLER+KEDF K+Y G KAAT A+SLN+EFG LKE MQY
Sbjct: 61 NGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQY 120
Query: 401 CVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLV 529
C+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG E+LV
Sbjct: 121 CMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLV 163
Score = 81 (28.5 bits), Expect = 1.8e-69, Sum P(2) = 1.8e-69
Identities = 15/42 (35%), Positives = 27/42 (64%), Frame = +1
Query: 541 EPSLSGSRFQAAGNQD*EKDVVPKHEDKANCSGYHNCLDSHY 666
E ++ + F N + +++VV +HEDK +C ++CLDSH+
Sbjct: 160 EMLVTAASFLYKKNSNEKEEVVSEHEDKTHCPCNYHCLDSHH 201
>gi|2494115|gb|AAB80624.1| (AC002376) Strong similarity to Arabidopsis ATHSAR1
(gb|M90418). ESTs gb|T44122,gb|N65276,gb|AA041135 come from this
gene. [Arabidopsis thaliana]
Length = 175
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | 175
0 50 100 150
Plus Strand HSPs:
Score = 643 (226.3 bits), Expect = 5.4e-62, P = 5.4e-62
Identities = 126/147 (85%), Positives = 138/147 (93%), Frame = +2
Query: 227 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCV 406
F+YCVVAV+SAGRQIP++FLER+KEDF K+Y GGKAATA A+SLN+EFG KLKE MQYC+
Sbjct: 19 FSYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCM 78
Query: 407 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 586
DHP+EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR GT+
Sbjct: 79 DHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQ 138
Query: 587 IRRKMWFQNMKIKLIVLGIIIALILII 667
+RRKMW QNMKIKLIVL IIIALILII
Sbjct: 139 MRRKMWLQNMKIKLIVLAIIIALILII 165
>gi|7485050|pir||B71423 hypothetical protein - Arabidopsis thaliana
>gi|2244934|emb|CAB10356.1| (Z97339) SYBL1 like protein
[Arabidopsis thaliana] >gi|7268326|emb|CAB78620.1| (AL161542) SYBL1
like protein [Arabidopsis thaliana]
Length = 159
Frame 2 hits (HSPs): ____________________ ________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
Plus Strand HSPs:
Score = 274 (96.5 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
Identities = 51/64 (79%), Positives = 59/64 (92%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNN-KFTYNCDGHTFNYLV 217
MGQ+S IYSFVARGT+ILAEYTEFTGNF S+AAQCLQKLPSS+N KFTYNCD HTFN+LV
Sbjct: 1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLV 60
Query: 218 DNGF 229
++ +
Sbjct: 61 EDAY 64
Score = 170 (59.8 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
Identities = 32/49 (65%), Positives = 39/49 (79%), Frame = +2
Query: 227 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFG 373
+ YCVVA +S +QI IAFLER+K DF K+Y GGKA+TA A SLN+EFG
Sbjct: 98 YAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFG 146
>gi|7488359|pir||T04630 synaptobrevin homolog F10N7.40 - Arabidopsis thaliana
>gi|3858935|emb|CAA16574.1| (AL021636) synaptobrevin-like protein
[Arabidopsis thaliana] >gi|4103357|gb|AAD01748.1| (AF025332)
vesicle-associated membrane protein 7C; synaptobrevin 7C
[Arabidopsis thaliana] >gi|7270119|emb|CAB79933.1| (AL161580)
synaptobrevin-like protein [Arabidopsis thaliana]
Length = 219
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 408 (143.6 bits), Expect = 4.3e-37, P = 4.3e-37
Identities = 79/204 (38%), Positives = 140/204 (68%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNK-FTYNCDGHTFNYLVDNGF 229
+++Y+ VARGTV+L+E+T + N +++A Q L+K+P N+ +Y+ D + F+ +G
Sbjct: 2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGL 61
Query: 230 TYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAA-TAAAHSLNREFGPKLKEEMQYCV 406
T +A E+AGR+IP AFLE I + F + Y G+A TA A+++N EF L +++ Y
Sbjct: 62 TVLCMAEETAGRRIPFAFLEDIHQRFVRTY--GRAVHTALAYAMNEEFSRVLSQQIDYYS 119
Query: 407 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 586
+ P ++ ++K ++++V+GVM+ENI+KVLDRGE++ELLVDKT N++ FR+Q +
Sbjct: 120 NDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARR 178
Query: 587 IRRKMWFQNMKIKLIVLGIIIALILI 664
R +W++N K+ ++++ +++ +I I
Sbjct: 179 FRSNVWWRNCKLTVLLILLLLVIIYI 204
>gi|8953377|emb|CAB96650.1| (AL360314) putative protein [Arabidopsis thaliana]
Length = 221
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 405 (142.6 bits), Expect = 9.0e-37, P = 9.0e-37
Identities = 82/205 (40%), Positives = 144/205 (70%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPS--SNNKFTYNCDGHTFNYLVDNG 226
++I++ VARGTV+L+E++ + N +S++ Q L+KLP S++ +Y+ D + F+ +G
Sbjct: 2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61
Query: 227 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAA-TAAAHSLNREFGPKLKEEMQYC 403
T +A E+AGR IP AFL+ I + F K Y G+A +A A+S+N EF L ++M++
Sbjct: 62 LTVLCMADETAGRNIPFAFLDDIHQRFVKTY--GRAIHSAQAYSMNDEFSRVLSQQMEFY 119
Query: 404 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGT 583
+ P +++++K ++S+V+ VM+ENI+KVLDRGE++ELLVDKTEN++ FR+Q
Sbjct: 120 SNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQAR 178
Query: 584 KIRRKMWFQNMKIKLIVLGIIIALILII 667
+ R MW++N+K+ + ++ +++AL++ I
Sbjct: 179 RYRTIMWWRNVKLTIALI-LVLALVVYI 205
>gi|9757817|dbj|BAB08335.1| (AB007651) synaptobrevin-like protein [Arabidopsis
thaliana]
Length = 221
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 394 (138.7 bits), Expect = 1.3e-35, P = 1.3e-35
Identities = 79/205 (38%), Positives = 139/205 (67%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKL-PS-SNNKFTYNCDGHTFNYLVDNG 226
+++Y+ VARGTV+LAE++ TGN +V + L+KL P S+ + ++ D + F+ L +G
Sbjct: 2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDG 61
Query: 227 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAA-TAAAHSLNREFGPKLKEEMQYC 403
T+ +A ++ GR++P ++LE I F K Y GK A A A+++N EF L ++M++
Sbjct: 62 LTFLCMANDTFGRRVPFSYLEEIHMRFMKNY--GKVAHNAPAYAMNDEFSRVLHQQMEFF 119
Query: 404 VDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGT 583
+P + L +V+ +VSE++ VM+ENIEK+++RG++IELLVDKT ++ + FR+Q
Sbjct: 120 SSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSK 178
Query: 584 KIRRKMWFQNMKIKLIVLGIIIALILII 667
++RR +W +N K+ +++ +I+ L+ II
Sbjct: 179 RLRRALWMKNAKLLVLLTCLIVFLLYII 206
>gi|4567243|gb|AAD23657.1|AC007070_6 (AC007070) putative synaptobrevin
[Arabidopsis thaliana]
Length = 219
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 376 (132.4 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 74/204 (36%), Positives = 136/204 (66%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKF-TYNCDGHTFNYLVDNGF 229
S++Y+ VARGTV+LAE + + N +++A Q L+K+P + + +Y+ D + F+ +G
Sbjct: 2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGL 61
Query: 230 TYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAA-TAAAHSLNREFGPKLKEEMQYCV 406
T +A E AGR+IP +FLE I + F + Y G+A +A A+++N EF L ++++Y
Sbjct: 62 TVLCMADEDAGRRIPFSFLEDIHQRFVRTY--GRAIHSAQAYAMNDEFSRVLNQQIEYYS 119
Query: 407 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 586
+ P ++++K ++++V+ VM+ENI+ +LDRGE++ELLVDKT N++ FR+Q +
Sbjct: 120 NDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRR 178
Query: 587 IRRKMWFQNMKIKLIVLGIIIALILI 664
+W++N K+ L+++ +++ +I I
Sbjct: 179 FNNTVWWRNCKLTLLLILVLLVIIYI 204
>gi|8096311|dbj|BAA95814.1| (AP002069) ESTs AU082579(S2069),D40238(S2069)
correspond to a region of the predicted gene.~Similar to
Arabidopsis thaliana vesicle-associated membrane protein 7C;
synaptobrevin 7C. (AF025332) [Oryza sativa]
Length = 221
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 365 (128.5 bits), Expect = 1.6e-32, P = 1.6e-32
Identities = 72/205 (35%), Positives = 133/205 (64%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPS--SNNKFTYNCDGHTFNYLVDNG 226
+++Y+ VARGTV+LAE++ N +VA Q L++LP +++ +Y D + F+ +G
Sbjct: 2 AILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRTDG 61
Query: 227 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCV 406
T +A E+AGR+IP AFLE I F K Y G A T+ A+ +N EF L ++M Y
Sbjct: 62 ITALCMADEAAGRRIPFAFLEDIHGRFVKTY-GRAALTSLAYGMNDEFSRVLSQQMDYYS 120
Query: 407 DHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 586
+ P ++ +++ ++S+V+ VM++NI+KVL+RG+++++LVDKT N++ F++Q +
Sbjct: 121 NDPNA-DRINRMRGEISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFKRQARR 179
Query: 587 IRRKMWFQNMKIKLIVLGIIIALILII 667
R W++N+K+ + ++ ++ +I ++
Sbjct: 180 FRNTTWWRNVKLTIALIFLLTVIIYVV 206
>gi|1617398|emb|CAA65509.1| (X96737) synaptobrevin-like protein [Mus musculus]
>gi|8439468|emb|CAB94231.1| (AJ133536) synaptobrevin-like protein
[Mus musculus]
Length = 220
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 357 (125.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 72/205 (35%), Positives = 122/205 (59%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT 232
+++++ VARGT ILA++ GNF V Q L K+PS NNK TY+ + F+Y+ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 233 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 412
Y + + R +FL +K+ F Y G +A TA +++N EF L ++++ ++
Sbjct: 62 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 413 PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIR 592
+ + K+ + +AQV E+KG+M+ NI+ V RGE++ELL+DKTENL + F+ +
Sbjct: 121 -KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLA 179
Query: 593 RKMWFQNMKIKLIVLGIIIALILII 667
R M +N+K+ +I++ + I I II
Sbjct: 180 RAMCMKNIKLTIIIIIVSIVFIYII 204
>gi|5032137 ref|NP_005629.1| synaptobrevin-like 1 [Homo sapiens] >gi|11420145
ref|XP_010234.1| synaptobrevin-like 1 [Homo sapiens]
>gi|1723133|sp|P51809|SYBL_HUMAN SYNAPTOBREVIN-LIKE PROTEIN 1
>gi|1150416|emb|CAA63133.1| (X92396) ORF [Homo sapiens]
>gi|8979792|emb|CAB96816.1| (AJ271736) synaptobrevin-like 1 protein
[Homo sapiens]
Length = 220
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 354 (124.6 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 73/205 (35%), Positives = 121/205 (59%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT 232
+++++ VARGT ILA++ GNF V Q L K+PS NNK TY+ + F+Y+ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 233 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 412
Y + + R FL IK+ F Y G +A TA +++N EF L ++++ ++
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 413 PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIR 592
+ + K+ + +AQV E+KG+M+ NI+ V RGE++ELL+DKTENL + F+ +
Sbjct: 121 -KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLA 179
Query: 593 RKMWFQNMKIKLIVLGIIIALILII 667
R M +N+K+ +I++ + I I II
Sbjct: 180 RAMCMKNLKLTIIIIIVSIVFIYII 204
>gi|11360410|pir||JC7258 vesicle-associated membrane protein-7 - rat
>gi|9502258|gb|AAF88059.1|AF281632_1 (AF281632) vesicle-associated
membrane protein 7 [Rattus norvegicus]
Length = 220
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 351 (123.6 bits), Expect = 4.8e-31, P = 4.8e-31
Identities = 71/205 (34%), Positives = 120/205 (58%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT 232
+++++ VARGT ILA++ GNF V Q L K+PS NNK TY+ + F+Y+ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 233 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 412
Y + + R FL +K+ F Y G +A TA +++N EF L ++++ ++
Sbjct: 62 YLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 413 PEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIR 592
+ + ++ + +AQV E+KG+M+ NI+ V RGE++ELL+DKTENL + F+ +
Sbjct: 121 -QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLA 179
Query: 593 RKMWFQNMKIKLIVLGIIIALILII 667
R M +N+K+ I++ + I I II
Sbjct: 180 RAMCVKNVKLTAIIVVVSIVFIYII 204
>gi|7303846|gb|AAF58892.1| (AE003832) CG1599 gene product [Drosophila
melanogaster]
Length = 218
Frame 2 hits (HSPs): _______________________________________________
__________________________________________________
Database sequence: | | | | | | 218
0 50 100 150 200
Plus Strand HSPs:
Score = 349 (122.9 bits), Expect = 7.8e-31, P = 7.8e-31
Identities = 69/204 (33%), Positives = 121/204 (59%), Frame = +2
Query: 56 LIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFTY 235
++YS ++RGT +LA++ E GNF V + ++ N+K TY + +Y +N Y
Sbjct: 3 ILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDYLIHYTCENKLVY 62
Query: 236 CVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHP 415
+ R FL IK+ F + Y G + ATA A+S+N EF L ++M Y
Sbjct: 63 MCITDNEFERSRAFLFLADIKQKFIQTY-GLQVATAIAYSMNTEFSKILAQQMVY-FSQS 120
Query: 416 EEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRR 595
E+ +++V Q+ E+K +M++NI+ + DRGEK+ELLV+KTENL + + FR+ + R
Sbjct: 121 REVDTISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLAR 180
Query: 596 KMWFQNMKIKLIVLGIIIALILII 667
+M+++N+++ +V+G++I I+ +
Sbjct: 181 QMFWKNIRV-YVVVGLVITFIVYV 203
>gi|7211997|gb|AAF40468.1|AC004809_26 (AC004809) Contains similarity to the
synaptobrevin-related protein (SAR1) gb|M901418. ESTs gb|T44122
and gb|AA067474 come from this gene. [Arabidopsis thaliana]
Length = 69
Frame 2 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
Plus Strand HSPs:
Score = 303 (106.7 bits), Expect = 5.8e-26, P = 5.8e-26
Identities = 55/64 (85%), Positives = 61/64 (95%), Frame = +2
Query: 41 MGQQSLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 220
M QQSLIYSFVARGTVIL E+T+F GNFTS+AAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 221 NGFT 232
+GF+
Sbjct: 61 DGFS 64
>gi|541870|pir||D44088 homeotic protein HAT24 - Arabidopsis thaliana (fragment)
Length = 60
Frame 2 hits (HSPs): _________________________________________________
Annotated Domains: _________________
__________________________________________________
Database sequence: | | | | 60
0 20 40
__________________
Annotated Domains:
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 8..27
__________________
Plus Strand HSPs:
Score = 281 (98.9 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 56/59 (94%), Positives = 58/59 (98%), Frame = +2
Query: 461 VKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWFQNMKIKLIVL 637
VKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFR QGT++RRKMWFQNMKIKLIVL
Sbjct: 1 VKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVL 59
>gi|11994671|dbj|BAB02899.1| (AB028609) contains similarity to
synaptobrevin~gene_id:K7P8.18 [Arabidopsis thaliana]
Length = 206
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 256 (90.1 bits), Expect = 5.6e-21, P = 5.6e-21
Identities = 60/103 (58%), Positives = 73/103 (70%), Frame = +2
Query: 377 KLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVD---KTENL 547
+L++ + + HPEEISKLAKVKA V+++KGVMMENIEK LDR EKI++LVD K NL
Sbjct: 96 QLEQRVLVLLAHPEEISKLAKVKALVTKMKGVMMENIEKALDRSEKIKILVDLRSKYSNL 155
Query: 548 R--SQAQ-DFRQQGTKIRRKMWFQNMKIKLIVLGIIIALILII 667
S Q D GTKI RKMWFQNMK KLIVLG + ++I
Sbjct: 156 PFPSYGQEDIITPGTKITRKMWFQNMKFKLIVLGTSSSRFVLI 198
>gi|11323013|emb|CAC16891.1| (AJ295938) synaptobrevin like protein 1B [Homo
sapiens]
Length = 260
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 238 (83.8 bits), Expect = 4.5e-19, P = 4.5e-19
Identities = 50/145 (34%), Positives = 84/145 (57%), Frame = +2
Query: 53 SLIYSFVARGTVILAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT 232
+++++ VARGT ILA++ GNF V Q L K+PS NNK TY+ + F+Y+ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 233 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 412
Y + + R FL IK+ F Y G +A TA +++N EF L ++++ ++
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 413 PEEISKLAKVKAQVSEVKGVMMENI 487
+ + K+ + +AQV E+KG+M+ NI
Sbjct: 121 -KGLDKVMETQAQVDELKGIMVRNI 144
>gi|2842701|sp|Q92356|SNC2_SCHPO PROBABLE SYNAPTOBREVIN HOMOLOG C6G9.11
>gi|7493453|pir||T39073 synaptobrevin homolog1 - fission yeast
(Schizosaccharomyces pombe) >gi|1644323|emb|CAB03613.1| (Z81317)
synaptobrevin homolog1 [Schizosaccharomyces pombe]
Length = 121
Frame 2 hits (HSPs): __________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 121
0 50 100
__________________
Annotated Domains:
BLOCKS BL00417A: Synaptobrevin proteins. 31..58
BLOCKS BL00417B: Synaptobrevin proteins. 59..112
Entrez Domain: CYTOPLASMIC (BY SIMILARITY). 1..97
Entrez Transmembrane region: POTENTIAL. 98..118
Entrez Domain: VESICULAR (BY SIMILARITY). 119..121
PFAM synaptobrevin: Synaptobrevin 22..110
PRINTS SYNAPTOBREVN1: Synaptobrevin motif I - 3 36..55
PRINTS SYNAPTOBREVN2: Synaptobrevin motif II - 56..75
PRINTS SYNAPTOBREVN3: Synaptobrevin motif III - 92..111
PRODOM PD057689: SNC2_SCHPO 1..21
PRODOM PD001229: SYB(4) SYB1(3) SYB2(3) 23..94
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 49..68
__________________
Plus Strand HSPs:
Score = 203 (71.5 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 37/81 (45%), Positives = 61/81 (75%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
K A ++ Q+ + G+M ENI KV +RGE+++ L DKT+NL AQ FR+ ++R+KMW+
Sbjct: 31 KTAAIQQQIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMWW 90
Query: 608 QNMKIKL-IVLGIIIALILII 667
++M+++L I++GIII L++II
Sbjct: 91 KDMRMRLCIIIGIIILLVVII 111
>gi|1363908|pir||S47654 integral membrane protein 25 - fluke (Schistosoma
mansoni) >gi|452785|emb|CAA54425.1| (X77211) IMP25 [Schistosoma
mansoni]
Length = 223
Frame 2 hits (HSPs): ___________________________________________
Annotated Domains: __________________________
__________________________________________________
Database sequence: | | | | | | 223
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00708: SYNAPTOBREVIN 106..210
PROSITE SUGAR_TRANSPORT_2: Sugar transport prote 194..219
__________________
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 5.5e-14, P = 5.5e-14
Identities = 53/189 (28%), Positives = 96/189 (50%), Frame = +2
Query: 101 YTEFTG-NFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESAGRQ--- 268
Y FT +F V + L P + + Y+ + + L +G ++ V +A RQ
Sbjct: 17 YRSFTKRSFEDVVLKYLLCNPPDQDIY-YSEGDFSLHCLTVSGLSFIAVTDRNASRQKFR 75
Query: 269 -IPIAFLERIKED---FTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHPEEISKLA 436
+ + D F + +GGK ++SLN E E+ + + L
Sbjct: 76 NLVVEVSRNFLSDGTRFQRAKSGGKDCLQQSYSLNLE-------ELMESPNSSKGNGSLD 128
Query: 437 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWFQNM 616
++++ V+ V VM EN L RG+++ LV KT+ L + A F+ TK+ RK W++N
Sbjct: 129 QLRSNVNTVTAVMQENTRLALQRGDRLNNLVSKTDELAASANQFQTTATKVARKTWWENF 188
Query: 617 KIKLIVLGIIIALILII 667
++KLI++G++ ++L+I
Sbjct: 189 RMKLIIVGVVGGILLVI 205
>gi|7303772|gb|AAF58820.1| (AE003830) Syb gene product [Drosophila
melanogaster]
Length = 129
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | 129
0 50 100
Plus Strand HSPs:
Score = 181 (63.7 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 35/80 (43%), Positives = 55/80 (68%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
KL + +A+V EV G+M N+EKVL+R +K+ L ++ + L A F QQ K++RK W+
Sbjct: 24 KLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQFEQQAGKLKRKQWW 83
Query: 608 QNMKIKLIVLGIIIALILII 667
NMK+ +I+LG+I ++LII
Sbjct: 84 ANMKM-MIILGVIAVVLLII 102
>gi|6319289 ref|NP_009372.1| homolog of Snc2p, vesicle-associated membrane
protein (synaptobrevin) homolog, forms a complex with Snc2p and
Sec9p; Snc1p [Saccharomyces cerevisiae]
>gi|401107|sp|P31109|SNC1_YEAST SYNAPTOBREVIN HOMOLOG 1
>gi|320861|pir||S31250 synaptobrevin homolog SNC1 - yeast
(Saccharomyces cerevisiae) >gi|172655|gb|AAA35069.1| (M91157)
synaptobrevin [Saccharomyces cerevisiae] >gi|595555|gb|AAC05002.1|
(U12980) Snc1p: Vesicle-associated membrane protein,synaptobrevin
homolog [Saccharomyces cerevisiae]
Length = 117
Frame 2 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 36/107 (33%), Positives = 68/107 (63%), Frame = +2
Query: 353 SLNREFGP-KLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLV 529
S + F P L E + + + S+ A+++A++ + G+M +NI KV +RGE++ +
Sbjct: 2 SSSTPFDPYALSEHDEERPQNVQSKSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIE 61
Query: 530 DKTENLRSQAQDFRQQGTKIRRKMWFQNMKIKL-IVLGIIIALILII 667
DK +NL AQ F++ ++R+ MW++++K+K+ + L III L++II
Sbjct: 62 DKADNLAVSAQGFKRGANRVRKAMWYKDLKMKMCLALVIIILLVVII 108
>gi|549022|sp|P35589|SYB_APLCA SYNAPTOBREVIN >gi|392975|gb|AAA19442.1| (U00997)
synaptobrevin [Aplysia californica]
Length = 180
Frame 2 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 180
0 50 100 150
__________________
Annotated Domains:
DOMO DM00708: SYNAPTOBREVIN 1..105
Entrez Domain: CYTOPLASMIC (PROBABLE). 1..84
Entrez Transmembrane region: SIGNAL-ANCHOR (TYP 85..104
Entrez Domain: VESICULAR (PROBABLE). 105..180
PFAM synaptobrevin: Synaptobrevin 12..100
PRINTS SYNAPTOBREVN1: Synaptobrevin motif I - 3 26..45
PRINTS SYNAPTOBREVN2: Synaptobrevin motif II - 46..65
PRINTS SYNAPTOBREVN3: Synaptobrevin motif III - 82..101
PRODOM PD001229: SYB(4) SYB1(3) SYB2(3) 20..84
PRODOM PD065713: SYB_APLCA 86..179
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 39..58
__________________
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 41/85 (48%), Positives = 56/85 (65%), Frame = +2
Query: 413 PEEISK-LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKI 589
P E SK L + +AQV EV +M N+EKVLDR +KI L D+ E L++ A F K+
Sbjct: 15 PREQSKRLQQTQAQVDEVVDIMRVNVEKVLDRDQKISQLDDRAEALQAGASQFEASAGKL 74
Query: 590 RRKMWFQNMKIKLIVLGIIIALILII 667
+RK W++N K+ LI LG II +I+II
Sbjct: 75 KRKYWWKNCKMMLI-LGAIIGVIVII 99
>gi|8744981|emb|CAB95269.1| (AL359778) possible synaptobrevin-like protein
[Leishmania major]
Length = 257
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | | 257
0 50 100 150 200 250
Plus Strand HSPs:
Score = 177 (62.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 40/157 (25%), Positives = 86/157 (54%), Frame = +2
Query: 200 TFNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAAT--AAAHSLNREFG 373
+++ + D+ F Y ++ ++ R+ A L+ + F K + + A R
Sbjct: 77 SYHLMTDDAFGYGIIGAKAVSRRDGHAALDELAALFKKMFVEPPSTLNPKLADVFVRPAR 136
Query: 374 PKLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 553
L + E +K+ KVK V EVK + ++N+E+V+ RG++I+ +V T++L+
Sbjct: 137 DLLMKYSSGAAAGSAE-NKVKKVKLAVDEVKNMALDNVERVIQRGQRIDDIVQATDDLQF 195
Query: 554 QAQDFRQQGTKIRRKMWFQNMKIKLIVLGIIIALILII 667
QA+ F++ +R +MW+ +MK ++I++G + ++L++
Sbjct: 196 QAEGFQRSSRDLRNQMWWSSMKGRIILVGAVSFMLLLL 233
>gi|483316|pir||JC1522 synaptobrevin isoform B - fruit fly (Drosophila
melanogaster) >gi|290282|gb|AAA28923.1| (L14270) synaptobrevin
[Drosophila melanogaster]
Length = 132
Frame 2 hits (HSPs): ______________________________
Annotated Domains: ________
__________________________________________________
Database sequence: | | | | 132
0 50 100
__________________
Annotated Domains:
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 65..84
__________________
Plus Strand HSPs:
Score = 173 (60.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 34/80 (42%), Positives = 54/80 (67%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
KL + +A+V EV G+M N+EKVL+R +K+ L ++ + L A QQ K++RK W+
Sbjct: 47 KLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQSEQQAGKLKRKQWW 106
Query: 608 QNMKIKLIVLGIIIALILII 667
NMK+ +I+LG+I ++LII
Sbjct: 107 ANMKM-MIILGVIAVVLLII 125
>gi|549023|sp|P18489|SYB_DROME SYNAPTOBREVIN >gi|483315|pir||JC1521
synaptobrevin isoform A - fruit fly (Drosophila melanogaster)
>gi|290283|gb|AAA28924.1| (L14270) synaptobrevin [Drosophila
melanogaster]
Length = 152
Frame 2 hits (HSPs): __________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
__________________
Annotated Domains:
DOMO DM00708: SYNAPTOBREVIN 27..131
Entrez Domain: CYTOPLASMIC (PROBABLE). 1..110
Entrez Transmembrane region: SIGNAL-ANCHOR (TYP 111..130
Entrez Domain: VESICULAR (PROBABLE). 131..152
Entrez Domain: ASN-RICH. 1..31
Entrez Splicing variant: VWP -> LFN (IN ISOFORM 130..132
Entrez Splicing variant: MISSING (IN ISOFORM SY 133..152
PFAM synaptobrevin: Synaptobrevin 34..126
PRINTS SYNAPTOBREVN1: Synaptobrevin motif I - 3 52..71
PRINTS SYNAPTOBREVN2: Synaptobrevin motif II - 72..91
PRINTS SYNAPTOBREVN3: Synaptobrevin motif III - 108..127
PRODOM PD057704: SYB_DROME 1..38
PRODOM PD001229: SYB(4) SYB1(3) SYB2(3) 40..110
PRODOM PD057705: SYB_DROME 112..151
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 65..84
__________________
Plus Strand HSPs:
Score = 173 (60.9 bits), Expect = 3.5e-12, P = 3.5e-12
Identities = 34/80 (42%), Positives = 54/80 (67%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
KL + +A+V EV G+M N+EKVL+R +K+ L ++ + L A QQ K++RK W+
Sbjct: 47 KLQQTQAKVDEVVGIMRVNVEKVLERDQKLSELGERADQLEQGASQSEQQAGKLKRKQWW 106
Query: 608 QNMKIKLIVLGIIIALILII 667
NMK+ +I+LG+I ++LII
Sbjct: 107 ANMKM-MIILGVIAVVLLII 125
>gi|7657675 ref|NP_055047.1| vesicle-associated membrane protein 2
(synaptobrevin 2); synaptobrevin 2 [Homo sapiens]
>gi|135094|sp|P19065|SYB2_HUMAN SYNAPTOBREVIN 2 (VESICLE-ASSOCIATED
MEMBRANE PROTEIN 2) (VAMP-2) >gi|89782|pir||JN0011 synaptobrevin 2
- bovine >gi|107752|pir||B38315 synaptobrevin 2 - human
>gi|338632|gb|AAA60604.1| (M36205) synaptobrevin 2 (SYB2) [Homo
sapiens] >gi|433076|emb|CAA53792.1| (X76199) synaptobrevin [Bos
taurus] >gi|2982503|emb|CAA12385.1| (AJ225044) vesicle associated
membrane protein 2 [Homo sapiens]
>gi|6537162|gb|AAF15551.1|AF135372_1 (AF135372) synaptobrevin 2;
SYB-2; VAMP-2; vesicle protein [Homo sapiens]
Length = 116
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 56/80 (70%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W+
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 608 QNMKIKLIVLGIIIALILII 667
+N+K+ +I+LG+I A+ILII
Sbjct: 91 KNLKM-MIILGVICAIILII 109
>gi|6678551 ref|NP_033523.1| vesicle-associated membrane protein 2 [Mus
musculus] >gi|6981614 ref|NP_036795.1| synaptobrevin 2
(vesicle-associated membrane protein, VAMP-2); vesicle-associated
membrane protein 2 [Rattus norvegicus]
>gi|2501081|sp|Q64357|SYB2_MOUSE SYNAPTOBREVIN 2
(VESICLE-ASSOCIATED MEMBRANE PROTEIN 2) (VAMP-2)
>gi|112476|pir||B34288 synaptobrevin 2 - rat
>gi|207627|gb|AAA42321.1| (M24105) vesicle associated membrane
protein VAMP-2 [Rattus norvegicus] >gi|1402799|gb|AAB03463.1|
(U60150) VAMP-2 [Mus musculus]
Length = 116
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 56/80 (70%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W+
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 608 QNMKIKLIVLGIIIALILII 667
+N+K+ +I+LG+I A+ILII
Sbjct: 91 KNLKM-MIILGVICAIILII 109
>gi|2253399|gb|AAB62931.1| (AF007168) vesicle associated membrane protein 2
[Mus musculus]
Length = 116
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 56/80 (70%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W+
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 608 QNMKIKLIVLGIIIALILII 667
+N+K+ +I+LG+I A+ILII
Sbjct: 91 KNLKM-MIILGVICAIILII 109
>gi|2660907|gb|AAB88137.1| (AF035016) synaptobrevin [Xenopus laevis]
Length = 114
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 114
0 50 100
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 56/80 (70%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV +M N++KVL+R K+ L D+T+ L++ A F K++RK W+
Sbjct: 29 RLQQTQAQVDEVVDIMRVNVDKVLERDTKLSELDDRTDALQAGASQFETSAAKLKRKYWW 88
Query: 608 QNMKIKLIVLGIIIALILII 667
+NMK+ +I++G++ A+ILII
Sbjct: 89 KNMKM-MIIMGVMCAIILII 107
>gi|4894188|emb|CAB43509.1| (AJ133104) vesicle associated membrane protein 2B
[Rattus norvegicus]
Length = 135
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 135
0 50 100
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 56/80 (70%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W+
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 608 QNMKIKLIVLGIIIALILII 667
+N+K+ +I+LG+I A+ILII
Sbjct: 91 KNLKM-MIILGVICAIILII 109
>gi|7292118|gb|AAF47530.1| (AE003472) n-syb gene product [alt 2] [Drosophila
melanogaster]
Length = 192
Frame 2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | 192
0 50 100 150
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 42/124 (33%), Positives = 71/124 (57%), Frame = +2
Query: 296 KEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHPEEIS---KLAKVKAQVSEVK 466
K+D K+ A A A + G E+ +P++I+ +L + +AQV EV
Sbjct: 3 KKDKNKEQADAAPAGDAPPNAGAPAGEGGDGEIVGGPHNPQQIAAQKRLQQTQAQVDEVV 62
Query: 467 GVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWFQNMKIKLIVLGII 646
+M N+EKVL+R K+ L D+ + L+ A F QQ K++RK W QN+K+ +I++G+I
Sbjct: 63 DIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQAGKLKRKFWLQNLKM-MIIMGVI 121
Query: 647 IALILI 664
L+++
Sbjct: 122 -GLVVV 126
>gi|7595843|gb|AAF64476.1| (AF240769) VAMP-2 [Macaca mulatta]
Length = 116
Frame 2 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 56/80 (70%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W+
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 608 QNMKIKLIVLGIIIALILII 667
+N+K+ +I+LG+I A+ILII
Sbjct: 91 KNLKM-MIILGVICAIILII 109
>gi|11427280 ref|XP_008570.1| vesicle-associated membrane protein 2
(synaptobrevin 2) [Homo sapiens]
Length = 147
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 33/80 (41%), Positives = 56/80 (70%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W+
Sbjct: 62 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 121
Query: 608 QNMKIKLIVLGIIIALILII 667
+N+K+ +I+LG+I A+ILII
Sbjct: 122 KNLKM-MIILGVICAIILII 140
>gi|311159|gb|AAA19816.1| (L16243) synaptobrevin [Saccharomyces cerevisiae]
Length = 115
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 28/100 (28%), Positives = 63/100 (63%), Frame = +2
Query: 368 FGPKLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 547
+ P + E +P +K A ++ ++ + G+M +NI KV +RGE++ + DK +NL
Sbjct: 7 YDPYVPPEESNSGANPNSQNKTAALRQEIDDTVGIMRDNINKVAERGERLTSIEDKADNL 66
Query: 548 RSQAQDFRQQGTKIRRKMWFQNMKIKLIVLGIIIALILII 667
AQ F++ ++R++MW++++K+++ + ++I L+++I
Sbjct: 67 AISAQGFKRGANRVRKQMWWKDLKMRMCLFLVVIILLVVI 106
>gi|6324903 ref|NP_014972.1| vesicle-associated membrane protein
(synaptobrevin) homolog; Snc2p [Saccharomyces cerevisiae]
>gi|1711414|sp|P33328|SNC2_YEAST SYNAPTOBREVIN HOMOLOG 2
>gi|2133172|pir||S62059 synaptobrevin homolog SNC2 - yeast
(Saccharomyces cerevisiae) >gi|1163064|emb|CAA89974.1| (Z49821)
SNC2 [Saccharomyces cerevisiae] >gi|1420715|emb|CAA99647.1|
(Z75235) ORF YOR327c [Saccharomyces cerevisiae]
Length = 115
Frame 2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 28/100 (28%), Positives = 63/100 (63%), Frame = +2
Query: 368 FGPKLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 547
+ P + E +P +K A ++ ++ + G+M +NI KV +RGE++ + DK +NL
Sbjct: 7 YDPYVPPEESNSGANPNSQNKTAALRQEIDDTVGIMRDNINKVAERGERLTSIEDKADNL 66
Query: 548 RSQAQDFRQQGTKIRRKMWFQNMKIKLIVLGIIIALILII 667
AQ F++ ++R++MW++++K+++ + ++I L+++I
Sbjct: 67 AISAQGFKRGANRVRKQMWWKDLKMRMCLFLVVIILLVVI 106
>gi|4759086 ref|NP_004883.1| SEC22, vesicle trafficking protein (S.
cerevisiae)-like 1; vesicle trafficking protein sec22b [Homo
sapiens] >gi|6755448 ref|NP_035472.1| SEC22 vesicle trafficking
protein-like 1 (S. cerevisiae) [Mus musculus] >gi|12725393
ref|XP_010722.1| SEC22, vesicle trafficking protein (S.
cerevisiae)-like 1 [Homo sapiens] >gi|1907386|gb|AAC53130.1|
(U91538) vesicle trafficking protein sec22b [Mus musculus]
>gi|3335140|gb|AAC39893.1| (AF047442) vesicle trafficking protein
sec22b [Homo sapiens] >gi|12655033|gb|AAH01364.1|AAH01364
(BC001364) SEC22, vesicle trafficking protein (S. cerevisiae)-like
1 [Homo sapiens]
Length = 215
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 43/181 (23%), Positives = 89/181 (49%), Frame = +2
Query: 122 FTSVAAQCLQKL-PSSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIK 298
+ S A Q +KL S + T TF+Y+++ G Y V+ + +++ A+LE +
Sbjct: 33 YQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 92
Query: 299 EDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMM 478
+F +++ G K T + EF +++ + +D L + ++ +V+ +M+
Sbjct: 93 SEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIMV 150
Query: 479 ENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWFQNMKIKLIVLGIIIALI 658
NIE+VL RGE + L K NL S ++ +RQ + + + K+ + + I+ ++
Sbjct: 151 ANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYA--KLAAVAVFFIMLIV 208
Query: 659 LI 664
+
Sbjct: 209 YV 210
>gi|1927215|gb|AAB51513.1| (U91742) ERS-24 [Cricetulus griseus]
Length = 215
Frame 2 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 43/181 (23%), Positives = 89/181 (49%), Frame = +2
Query: 122 FTSVAAQCLQKL-PSSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIK 298
+ S A Q +KL S + T TF+Y+++ G Y V+ + +++ A+LE +
Sbjct: 33 YQSQAKQLFRKLNEQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 92
Query: 299 EDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHPEEISKLAKVKAQVSEVKGVMM 478
+F +++ G K T + EF +++ + +D L + ++ +V+ +M+
Sbjct: 93 SEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIMV 150
Query: 479 ENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWFQNMKIKLIVLGIIIALI 658
NIE+VL RGE + L K NL S ++ +RQ + + + K+ + + I+ ++
Sbjct: 151 ANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYA--KLAAVAVFFIMLIV 208
Query: 659 LI 664
+
Sbjct: 209 YV 210
>gi|7511661|pir||T33239 synaptobrevin SNB-1 - Caenorhabditis elegans
>gi|2196766|gb|AAB61234.1| (AF003281) SNB-1; synaptobrevin
[Caenorhabditis elegans] >gi|2196768|gb|AAB61235.1| (AF003282)
SNB-1; synaptobrevin [Caenorhabditis elegans]
>gi|3193208|gb|AAC19234.1| (AF067949) C. elegans synaptobrevin
SNB-1 (GB:AF003282) [Caenorhabditis elegans]
Length = 109
Frame 2 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | | 109
0 20 40 60 80 100
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.7e-12, P = 5.7e-12
Identities = 31/80 (38%), Positives = 54/80 (67%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV G+M N+EKVL+R +K+ L D+ + L+ A F + ++RK W+
Sbjct: 23 RLQQTQAQVDEVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWW 82
Query: 608 QNMKIKLIVLGIIIALILII 667
+N+K+ +I+ I++ LI+II
Sbjct: 83 KNIKMMIIMCAIVVILIIII 102
>gi|6094391|sp|P47193|SYB2_XENLA SYNAPTOBREVIN 2 (SYBII)
>gi|2660909|gb|AAB88138.1| (AF035017) synaptobrevin [Xenopus
laevis]
Length = 114
Frame 2 hits (HSPs): ___________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 114
0 50 100
__________________
Annotated Domains:
Entrez Domain: CYTOPLASMIC (PROBABLE). 2..92
Entrez Transmembrane region: SIGNAL-ANCHOR (TYP 93..111
Entrez Domain: VESICULAR (PROBABLE). 112..114
Entrez acetylation site: (BY SIMILARITY). 2
PFAM synaptobrevin: Synaptobrevin 16..107
PRINTS SYNAPTOBREVN1: Synaptobrevin motif I - 3 33..52
PRINTS SYNAPTOBREVN2: Synaptobrevin motif II - 53..72
PRINTS SYNAPTOBREVN3: Synaptobrevin motif III - 89..108
PRODOM PD001229: SYB(4) SYB1(3) SYB2(3) 22..91
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 47..66
__________________
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 7.2e-12, P = 7.2e-12
Identities = 33/80 (41%), Positives = 55/80 (68%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
+L + +AQV EV +M N++KVL+R K+ L D+ + L++ A F K++RK W+
Sbjct: 29 RLQQTQAQVDEVVDIMRVNVDKVLERDTKLSELDDRADALQAGASQFETSAAKLKRKYWW 88
Query: 608 QNMKIKLIVLGIIIALILII 667
+NMK+ +I++G+I A+ILII
Sbjct: 89 KNMKM-MIIMGVICAIILII 107
>gi|7292117|gb|AAF47529.1| (AE003472) n-syb gene product [alt 1] [Drosophila
melanogaster]
Length = 183
Frame 2 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 169 (59.5 bits), Expect = 9.2e-12, P = 9.2e-12
Identities = 34/86 (39%), Positives = 59/86 (68%), Frame = +2
Query: 410 HPEEIS---KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 580
+P++I+ +L + +AQV EV +M N+EKVL+R K+ L D+ + L+ A F QQ
Sbjct: 32 NPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDSKLSELDDRADALQQGASQFEQQA 91
Query: 581 TKIRRKMWFQNMKIKLIVLGIIIALILI 664
K++RK W QN+K+ +I++G+I L+++
Sbjct: 92 GKLKRKFWLQNLKM-MIIMGVI-GLVVV 117
>gi|436307|gb|AAB28707.1| (S66686) synaptic vesicle protein=n-syb [Drosophila,
head, Peptide, 181 aa] [Drosophila sp.] >gi|738733|prf||2001392A
synaptic vesicle protein [Drosophila melanogaster]
Length = 181
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 34/86 (39%), Positives = 59/86 (68%), Frame = +2
Query: 410 HPEEIS---KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 580
+P++I+ +L + +AQV EV +M N+EKVL+R K+ L D+ + L+ A F QQ
Sbjct: 32 NPQQIAAQKRLQQTQAQVDEVVDIMRTNVEKVLERDTKLSELDDRADALQQGASQFEQQA 91
Query: 581 TKIRRKMWFQNMKIKLIVLGIIIALILI 664
K++RK W QN+K+ +I++G+I L+++
Sbjct: 92 GKLKRKFWLQNLKM-MIIMGVI-GLVVV 117
>gi|4200247|emb|CAA22896.1| (AL035296) hypothetical protein [Homo sapiens]
Length = 141
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 33/80 (41%), Positives = 55/80 (68%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
K+ V+ QV EV VM ENI KV++RGE+++ L DK+E+L A F + ++RR+MW+
Sbjct: 52 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 111
Query: 608 QNMKIKLIVLGIIIALILII 667
+ KIK I + ++ A++L++
Sbjct: 112 RGCKIKAI-MALVAAILLLV 130
>gi|11423718 ref|XP_001723.1| vesicle-associated membrane protein 4 [Homo
sapiens] >gi|12720057 ref|XP_010619.1| similar to
vesicle-associated membrane protein 4; vesicle associated membrane
(M. musculus) [Homo sapiens]
Length = 151
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 33/80 (41%), Positives = 55/80 (68%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
K+ V+ QV EV VM ENI KV++RGE+++ L DK+E+L A F + ++RR+MW+
Sbjct: 62 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 121
Query: 608 QNMKIKLIVLGIIIALILII 667
+ KIK I + ++ A++L++
Sbjct: 122 RGCKIKAI-MALVAAILLLV 140
>gi|7949160 ref|NP_058076.1| vesicle-associated membrane protein 4; vesicle
associated membrane protein 4 [Mus musculus]
>gi|3108179|gb|AAC15776.1| (AF061516) vesicle associated membrane
protein 4 [Mus musculus]
Length = 141
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 167 (58.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 36/81 (44%), Positives = 54/81 (66%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
K+ V+ QV EV VM ENI KV++RGE+++ L DK+E+L A F + ++RR+MW+
Sbjct: 52 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 111
Query: 608 QNMKIKLIV-LGIIIALILII 667
+ KIK I+ L I L++II
Sbjct: 112 RGCKIKAIMALAAAILLLMII 132
>gi|4507863 ref|NP_003753.1| vesicle-associated membrane protein 4 [Homo
sapiens] >gi|3248920|gb|AAC24032.1| (AF044310) VAMP 4 [Homo
sapiens]
Length = 141
Frame 2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 33/80 (41%), Positives = 55/80 (68%), Frame = +2
Query: 428 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKIRRKMWF 607
K+ V+ QV EV VM ENI KV++RGE+++ L DK+E+L A F + ++RR+MW+
Sbjct: 52 KIKHVQNQVDEVIDVMPENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWW 111
Query: 608 QNMKIKLIVLGIIIALILII 667
+ KIK I + ++ A++L++
Sbjct: 112 RGCKIKAI-MALVAAILLLV 130
WARNING: HSPs involving 84 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.348 0.148 0.488
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.320 0.135 0.380
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.348 0.155 0.589
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.350 0.150 0.505
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.362 0.161 0.641
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.328 0.142 0.424
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 223 220 10. 77 3 12 22 0.10 35
32 0.12 38
+2 0 223 221 10. 77 3 12 22 0.11 35
32 0.12 38
+1 0 224 222 10. 77 3 12 22 0.11 35
32 0.12 38
-1 0 224 221 10. 77 3 12 22 0.11 35
32 0.12 38
-2 0 223 220 10. 77 3 12 22 0.10 35
32 0.12 38
-3 0 223 220 10. 77 3 12 22 0.10 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 134
No. of states in DFA: 596 (59 KB)
Total size of DFA: 223 KB (256 KB)
Time to generate neighborhood: 0.02u 0.01s 0.03t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 240.92u 1.07s 241.99t Elapsed: 00:02:38
Total cpu time: 241.01u 1.12s 242.13t Elapsed: 00:02:38
Start: Wed Jan 16 18:40:23 2002 End: Wed Jan 16 18:43:01 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000