R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 61 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|7211989|gb|AAF40460.1|AC004809_18 (AC004809) Strong similarity to the
synaptobrevin homolog F25I18.14 gi|2924792 from A. thaliana on BAC
gb|AC002334. [Arabidopsis thaliana]
Length = 229
Frame 3 hits (HSPs): ___________________________________
__________________________________________________
Database sequence: | | | | | | 229
0 50 100 150 200
Plus Strand HSPs:
Score = 745 (262.3 bits), Expect = 8.5e-73, P = 8.5e-73
Identities = 140/160 (87%), Positives = 150/160 (93%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
MGQQSLIYSFVARGTV LAEYTEF GNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYL D
Sbjct: 1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLAD 60
Query: 360 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 539
NGFTYCVV +ESAGRQIP+AFLER+KEDF K+Y GGKA+TA A+SLN+EFG KLKE MQY
Sbjct: 61 NGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQY 120
Query: 540 CVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
C DHPEEIS+L+KVKAQV+EVKGVMMENIEKVLDRGEKIE
Sbjct: 121 CADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIE 160
>gi|7485009|pir||T00801 homeobox protein homolog F24L7.19 - Arabidopsis
thaliana >gi|2914706|gb|AAC04496.1| (AC003974) putative
synaptobrevin [Arabidopsis thaliana]
Length = 220
Frame 3 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 742 (261.2 bits), Expect = 1.8e-72, P = 1.8e-72
Identities = 140/160 (87%), Positives = 150/160 (93%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
MGQQ+LIYSFVARGTV L EYTEF GNFT+VAAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 360 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 539
NGFTYCVVAVES GRQIP+AFLER+KEDF K+Y GGKA TA A+SLNREFG KLKE MQY
Sbjct: 61 NGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQY 120
Query: 540 CVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
CVDHP+EIS+LAKVKAQV+EVKGVMMENIEKVLDRGEKIE
Sbjct: 121 CVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIE 160
>gi|2924792|gb|AAC04921.1| (AC002334) putative synaptobrevin [Arabidopsis
thaliana]
Length = 221
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 736 (259.1 bits), Expect = 7.6e-72, P = 7.6e-72
Identities = 138/160 (86%), Positives = 151/160 (94%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
M QQSLIYSFVARGTV L E+T+F GNFTS+AAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 360 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 539
NGFTYCVVAV+SAGRQIP+AFLER+KEDF K+Y GGKAATA A+SLN+EFG KLKE MQY
Sbjct: 61 NGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120
Query: 540 CVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
C+DHP+EIS+LAKVKAQVSEVKGVMMENIEKVLDRGEKIE
Sbjct: 121 CMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 160
>gi|1174498|sp|P47192|SYBR_ARATH SYNAPTOBREVIN-RELATED PROTEIN
>gi|600710|gb|AAA56991.1| (M90418) formerly called HAT24;
synaptobrevin-related protein [Arabidopsis thaliana]
Length = 221
Frame 3 hits (HSPs): ____________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00417A: Synaptobrevin proteins. 130..157
BLOCKS BL00417B: Synaptobrevin proteins. 158..211
DOMO DM08193: 1..107
DOMO DM00708: SYNAPTOBREVIN 109..214
Entrez Domain: CYTOPLASMIC (PROBABLE). 1..196
Entrez Transmembrane region: POTENTIAL. 197..217
Entrez Domain: VESICULAR (PROBABLE). 218..221
PFAM synaptobrevin: Synaptobrevin 118..209
PRINTS SYNAPTOBREVN1: Synaptobrevin motif I - 3 135..154
PRINTS SYNAPTOBREVN2: Synaptobrevin motif II - 155..174
PRINTS SYNAPTOBREVN3: Synaptobrevin motif III - 191..210
PRODOM PD008038: 1..61
PRODOM PD010478: 63..128
PRODOM PD001229: SYB(4) SYB1(3) SYB2(3) 130..193
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 148..167
__________________
Plus Strand HSPs:
Score = 728 (256.3 bits), Expect = 5.4e-71, P = 5.4e-71
Identities = 137/160 (85%), Positives = 150/160 (93%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
M QQSLIYSFVARGTV L E+T+F GNFTS+AAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 360 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 539
NGFTYCVVAV+SAGRQIP+AFLER+KEDF K+Y GGKAATA A+SLN+EFG KLKE MQY
Sbjct: 61 NGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120
Query: 540 CVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
C+ HP+EIS+LAKVKAQVSEVKGVMMENIEKVLDRGEKIE
Sbjct: 121 CMAHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 160
>gi|4090884|gb|AAC98905.1| (AF025333) vesicle-associated membrane protein 7B;
synaptobrevin 7B [Arabidopsis thaliana]
Length = 219
Frame 3 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 728 (256.3 bits), Expect = 5.4e-71, P = 5.4e-71
Identities = 136/160 (85%), Positives = 151/160 (94%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
M QQSLIYSFVARGTV L E+T+F GNFTS+AAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 360 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 539
+GFTYCVVAV+SAGRQIP++FLER+KEDF K+Y GGKAATA A+SLN+EFG KLKE MQY
Sbjct: 61 DGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQY 120
Query: 540 CVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
C+DHP+EIS+LAKVKAQVSEVKGVMMENIEKVLDRGEKIE
Sbjct: 121 CMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 160
>gi|2924793|gb|AAC04922.1| (AC002334) putative synaptobrevin [Arabidopsis
thaliana]
Length = 212
Frame 3 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 212
0 50 100 150 200
Plus Strand HSPs:
Score = 637 (224.2 bits), Expect = 2.4e-61, P = 2.4e-61
Identities = 121/156 (77%), Positives = 136/156 (87%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
M QQSL YSF+ARGTV L E+T+F GNFTSVAAQ L+ LPSSNNKFTYNCDGHTFN LV+
Sbjct: 1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVE 60
Query: 360 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQY 539
NGFTYCVVAV+SAGR+IP+AFLER+KEDF K+Y G KAAT A+SLN+EFG LKE MQY
Sbjct: 61 NGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQY 120
Query: 540 CVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRG 647
C+DHP+EIS LAK KAQVSEVK +MMENIEKVL RG
Sbjct: 121 CMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARG 156
>gi|11358869|pir||T47589 synaptobrevin-like protein - Arabidopsis thaliana
>gi|6822076|emb|CAB71004.1| (AL132957) synaptobrevin-like protein
[Arabidopsis thaliana]
Length = 240
Frame 3 hits (HSPs): ____________________ ______________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 355 (125.0 bits), Expect = 4.9e-55, Sum P(2) = 4.9e-55
Identities = 61/93 (65%), Positives = 80/93 (86%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
M Q+ LIYSFVA+GTV LAE+T ++GNF+++A QCLQKLP++++K+TY+CDGHTFN+LVD
Sbjct: 1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60
Query: 360 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKY 458
NGF + VVA ES GR +P FLER+KEDF K+Y
Sbjct: 61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRY 93
Score = 240 (84.5 bits), Expect = 4.9e-55, Sum P(2) = 4.9e-55
Identities = 43/60 (71%), Positives = 56/60 (93%), Frame = +3
Query: 480 AAAHSLNREFGPKLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ A++L+REFGP LKE MQYC+ HPEE+S+L+K+KAQ++EVKG+MM+NIEKVLDRGEKIE
Sbjct: 120 SVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIE 179
>gi|2494115|gb|AAB80624.1| (AC002376) Strong similarity to Arabidopsis ATHSAR1
(gb|M90418). ESTs gb|T44122,gb|N65276,gb|AA041135 come from this
gene. [Arabidopsis thaliana]
Length = 175
Frame 3 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 175
0 50 100 150
Plus Strand HSPs:
Score = 433 (152.4 bits), Expect = 9.8e-40, P = 9.8e-40
Identities = 82/98 (83%), Positives = 93/98 (94%), Frame = +3
Query: 366 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCV 545
F+YCVVAV+SAGRQIP++FLER+KEDF K+Y GGKAATA A+SLN+EFG KLKE MQYC+
Sbjct: 19 FSYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCM 78
Query: 546 DHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
DHP+EIS+LAKVKAQVSEVKGVMMENIEKVLDRGEKIE
Sbjct: 79 DHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 116
>gi|7485050|pir||B71423 hypothetical protein - Arabidopsis thaliana
>gi|2244934|emb|CAB10356.1| (Z97339) SYBL1 like protein
[Arabidopsis thaliana] >gi|7268326|emb|CAB78620.1| (AL161542) SYBL1
like protein [Arabidopsis thaliana]
Length = 159
Frame 3 hits (HSPs): ____________________ ________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
Plus Strand HSPs:
Score = 269 (94.7 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 50/64 (78%), Positives = 58/64 (90%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNN-KFTYNCDGHTFNYLV 356
MGQ+S IYSFVARGT+ LAEYTEFTGNF S+AAQCLQKLPSS+N KFTYNCD HTFN+LV
Sbjct: 1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLV 60
Query: 357 DNGF 368
++ +
Sbjct: 61 EDAY 64
Score = 170 (59.8 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
Identities = 32/49 (65%), Positives = 39/49 (79%), Frame = +3
Query: 366 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFG 512
+ YCVVA +S +QI IAFLER+K DF K+Y GGKA+TA A SLN+EFG
Sbjct: 98 YAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFG 146
>gi|7488359|pir||T04630 synaptobrevin homolog F10N7.40 - Arabidopsis thaliana
>gi|3858935|emb|CAA16574.1| (AL021636) synaptobrevin-like protein
[Arabidopsis thaliana] >gi|4103357|gb|AAD01748.1| (AF025332)
vesicle-associated membrane protein 7C; synaptobrevin 7C
[Arabidopsis thaliana] >gi|7270119|emb|CAB79933.1| (AL161580)
synaptobrevin-like protein [Arabidopsis thaliana]
Length = 219
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 313 (110.2 bits), Expect = 5.1e-27, P = 5.1e-27
Identities = 64/156 (41%), Positives = 107/156 (68%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNK-FTYNCDGHTFNYLVDNGF 368
+++Y+ VARGTV L+E+T + N +++A Q L+K+P N+ +Y+ D + F+ +G
Sbjct: 2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGL 61
Query: 369 TYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAA-TAAAHSLNREFGPKLKEEMQYCV 545
T +A E+AGR+IP AFLE I + F + Y G+A TA A+++N EF L +++ Y
Sbjct: 62 TVLCMAEETAGRRIPFAFLEDIHQRFVRTY--GRAVHTALAYAMNEEFSRVLSQQIDYYS 119
Query: 546 DHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ P R+ ++K ++++V+GVM+ENI+KVLDRGE++E
Sbjct: 120 NDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLE 156
>gi|8953377|emb|CAB96650.1| (AL360314) putative protein [Arabidopsis thaliana]
Length = 221
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 302 (106.3 bits), Expect = 7.4e-26, P = 7.4e-26
Identities = 64/156 (41%), Positives = 108/156 (69%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPS--SNNKFTYNCDGHTFNYLVDNG 365
++I++ VARGTV L+E++ + N +S++ Q L+KLP S++ +Y+ D + F+ +G
Sbjct: 2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61
Query: 366 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAA-TAAAHSLNREFGPKLKEEMQYC 542
T +A E+AGR IP AFL+ I + F K Y G+A +A A+S+N EF L ++M++
Sbjct: 62 LTVLCMADETAGRNIPFAFLDDIHQRFVKTY--GRAIHSAQAYSMNDEFSRVLSQQMEFY 119
Query: 543 VDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ P R++++K ++S+V+ VM+ENI+KVLDRGE++E
Sbjct: 120 SNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLE 157
>gi|7211997|gb|AAF40468.1|AC004809_26 (AC004809) Contains similarity to the
synaptobrevin-related protein (SAR1) gb|M901418. ESTs gb|T44122
and gb|AA067474 come from this gene. [Arabidopsis thaliana]
Length = 69
Frame 3 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
Plus Strand HSPs:
Score = 298 (104.9 bits), Expect = 2.0e-25, P = 2.0e-25
Identities = 54/64 (84%), Positives = 60/64 (93%), Frame = +3
Query: 180 MGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
M QQSLIYSFVARGTV L E+T+F GNFTS+AAQCLQKLPSSNNKFTYNCDGHTFNYLV+
Sbjct: 1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60
Query: 360 NGFT 371
+GF+
Sbjct: 61 DGFS 64
>gi|9757817|dbj|BAB08335.1| (AB007651) synaptobrevin-like protein [Arabidopsis
thaliana]
Length = 221
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 291 (102.4 bits), Expect = 1.1e-24, P = 1.1e-24
Identities = 61/156 (39%), Positives = 105/156 (67%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKL-PS-SNNKFTYNCDGHTFNYLVDNG 365
+++Y+ VARGTV LAE++ TGN +V + L+KL P S+ + ++ D + F+ L +G
Sbjct: 2 AIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDG 61
Query: 366 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAA-TAAAHSLNREFGPKLKEEMQYC 542
T+ +A ++ GR++P ++LE I F K Y GK A A A+++N EF L ++M++
Sbjct: 62 LTFLCMANDTFGRRVPFSYLEEIHMRFMKNY--GKVAHNAPAYAMNDEFSRVLHQQMEFF 119
Query: 543 VDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+P + L +V+ +VSE++ VM+ENIEK+++RG++IE
Sbjct: 120 SSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIE 157
>gi|4567243|gb|AAD23657.1|AC007070_6 (AC007070) putative synaptobrevin
[Arabidopsis thaliana]
Length = 219
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 219
0 50 100 150 200
Plus Strand HSPs:
Score = 281 (98.9 bits), Expect = 1.3e-23, P = 1.3e-23
Identities = 58/156 (37%), Positives = 104/156 (66%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKF-TYNCDGHTFNYLVDNGF 368
S++Y+ VARGTV LAE + + N +++A Q L+K+P + + +Y+ D + F+ +G
Sbjct: 2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGL 61
Query: 369 TYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAA-TAAAHSLNREFGPKLKEEMQYCV 545
T +A E AGR+IP +FLE I + F + Y G+A +A A+++N EF L ++++Y
Sbjct: 62 TVLCMADEDAGRRIPFSFLEDIHQRFVRTY--GRAIHSAQAYAMNDEFSRVLNQQIEYYS 119
Query: 546 DHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ P ++++K ++++V+ VM+ENI+ +LDRGE++E
Sbjct: 120 NDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLE 156
>gi|8096311|dbj|BAA95814.1| (AP002069) ESTs AU082579(S2069),D40238(S2069)
correspond to a region of the predicted gene.~Similar to
Arabidopsis thaliana vesicle-associated membrane protein 7C;
synaptobrevin 7C. (AF025332) [Oryza sativa]
Length = 221
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 277 (97.5 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 60/156 (38%), Positives = 101/156 (64%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPS--SNNKFTYNCDGHTFNYLVDNG 365
+++Y+ VARGTV LAE++ N +VA Q L++LP +++ +Y D + F+ +G
Sbjct: 2 AILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRTDG 61
Query: 366 FTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCV 545
T +A E+AGR+IP AFLE I F K Y G A T+ A+ +N EF L ++M Y
Sbjct: 62 ITALCMADEAAGRRIPFAFLEDIHGRFVKTY-GRAALTSLAYGMNDEFSRVLSQQMDYYS 120
Query: 546 DHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ P R+ +++ ++S+V+ VM++NI+KVL+RG++++
Sbjct: 121 NDPNA-DRINRMRGEISQVRTVMIDNIDKVLERGDRLD 157
>gi|11360410|pir||JC7258 vesicle-associated membrane protein-7 - rat
>gi|9502258|gb|AAF88059.1|AF281632_1 (AF281632) vesicle-associated
membrane protein 7 [Rattus norvegicus]
Length = 220
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 266 (93.6 bits), Expect = 4.9e-22, P = 4.9e-22
Identities = 53/156 (33%), Positives = 91/156 (58%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT 371
+++++ VARGT LA++ GNF V Q L K+PS NNK TY+ + F+Y+ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 372 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 551
Y + + R FL +K+ F Y G +A TA +++N EF L ++++ ++
Sbjct: 62 YLCITDDDFERSRAFGFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 552 PEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ + R+ + +AQV E+KG+M+ NI+ V RGE++E
Sbjct: 121 -QSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLE 155
>gi|1617398|emb|CAA65509.1| (X96737) synaptobrevin-like protein [Mus musculus]
>gi|8439468|emb|CAB94231.1| (AJ133536) synaptobrevin-like protein
[Mus musculus]
Length = 220
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 262 (92.2 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 52/156 (33%), Positives = 92/156 (58%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT 371
+++++ VARGT LA++ GNF V Q L K+PS NNK TY+ + F+Y+ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 372 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 551
Y + + R +FL +K+ F Y G +A TA +++N EF L ++++ ++
Sbjct: 62 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 552 PEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ + ++ + +AQV E+KG+M+ NI+ V RGE++E
Sbjct: 121 -KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLE 155
>gi|5032137 ref|NP_005629.1| synaptobrevin-like 1 [Homo sapiens] >gi|11420145
ref|XP_010234.1| synaptobrevin-like 1 [Homo sapiens]
>gi|1723133|sp|P51809|SYBL_HUMAN SYNAPTOBREVIN-LIKE PROTEIN 1
>gi|1150416|emb|CAA63133.1| (X92396) ORF [Homo sapiens]
>gi|8979792|emb|CAB96816.1| (AJ271736) synaptobrevin-like 1 protein
[Homo sapiens]
Length = 220
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Plus Strand HSPs:
Score = 258 (90.8 bits), Expect = 3.4e-21, P = 3.4e-21
Identities = 53/156 (33%), Positives = 91/156 (58%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT 371
+++++ VARGT LA++ GNF V Q L K+PS NNK TY+ + F+Y+ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 372 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 551
Y + + R FL IK+ F Y G +A TA +++N EF L ++++ ++
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 552 PEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ + ++ + +AQV E+KG+M+ NI+ V RGE++E
Sbjct: 121 -KGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLE 155
>gi|7303846|gb|AAF58892.1| (AE003832) CG1599 gene product [Drosophila
melanogaster]
Length = 218
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 218
0 50 100 150 200
Plus Strand HSPs:
Score = 254 (89.4 bits), Expect = 9.1e-21, P = 9.1e-21
Identities = 52/155 (33%), Positives = 85/155 (54%), Frame = +3
Query: 195 LIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFTY 374
++YS ++RGT LA++ E GNF V + ++ N+K TY + +Y +N Y
Sbjct: 3 ILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDYLIHYTCENKLVY 62
Query: 375 CVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHP 554
+ R FL IK+ F + Y G + ATA A+S+N EF L ++M Y
Sbjct: 63 MCITDNEFERSRAFLFLADIKQKFIQTY-GLQVATAIAYSMNTEFSKILAQQMVY-FSQS 120
Query: 555 EEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
E+ +++V Q+ E+K +M++NI+ + DRGEK+E
Sbjct: 121 REVDTISRVHGQIDELKDIMVKNIDSLRDRGEKLE 155
>gi|11323013|emb|CAC16891.1| (AJ295938) synaptobrevin like protein 1B [Homo
sapiens]
Length = 260
Frame 3 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 230 (81.0 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 48/145 (33%), Positives = 83/145 (57%), Frame = +3
Query: 192 SLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT 371
+++++ VARGT LA++ GNF V Q L K+PS NNK TY+ + F+Y+ +
Sbjct: 2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 61
Query: 372 YCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDH 551
Y + + R FL IK+ F Y G +A TA +++N EF L ++++ ++
Sbjct: 62 YLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120
Query: 552 PEEISRLAKVKAQVSEVKGVMMENI 626
+ + ++ + +AQV E+KG+M+ NI
Sbjct: 121 -KGLDKVMETQAQVDELKGIMVRNI 144
>gi|11994671|dbj|BAB02899.1| (AB028609) contains similarity to
synaptobrevin~gene_id:K7P8.18 [Arabidopsis thaliana]
Length = 206
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 150 (52.8 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 30/48 (62%), Positives = 40/48 (83%), Frame = +3
Query: 516 KLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+L++ + + HPEEIS+LAKVKA V+++KGVMMENIEK LDR EKI+
Sbjct: 96 QLEQRVLVLLAHPEEISKLAKVKALVTKMKGVMMENIEKALDRSEKIK 143
>gi|4759086 ref|NP_004883.1| SEC22, vesicle trafficking protein (S.
cerevisiae)-like 1; vesicle trafficking protein sec22b [Homo
sapiens] >gi|6755448 ref|NP_035472.1| SEC22 vesicle trafficking
protein-like 1 (S. cerevisiae) [Mus musculus] >gi|12725393
ref|XP_010722.1| SEC22, vesicle trafficking protein (S.
cerevisiae)-like 1 [Homo sapiens] >gi|1907386|gb|AAC53130.1|
(U91538) vesicle trafficking protein sec22b [Mus musculus]
>gi|3335140|gb|AAC39893.1| (AF047442) vesicle trafficking protein
sec22b [Homo sapiens] >gi|12655033|gb|AAH01364.1|AAH01364
(BC001364) SEC22, vesicle trafficking protein (S. cerevisiae)-like
1 [Homo sapiens]
Length = 215
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 136 (47.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 34/132 (25%), Positives = 67/132 (50%), Frame = +3
Query: 261 FTSVAAQCLQKL-PSSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIK 437
+ S A Q +KL S + T TF+Y+++ G Y V+ + +++ A+LE +
Sbjct: 33 YQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 92
Query: 438 EDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMM 617
+F +++ G K T + EF +++ + +D L + ++ +V+ +M+
Sbjct: 93 SEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIMV 150
Query: 618 ENIEKVLDRGEKI 656
NIE+VL RGE +
Sbjct: 151 ANIEEVLQRGEAL 163
>gi|1927215|gb|AAB51513.1| (U91742) ERS-24 [Cricetulus griseus]
Length = 215
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 215
0 50 100 150 200
Plus Strand HSPs:
Score = 136 (47.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 34/132 (25%), Positives = 67/132 (50%), Frame = +3
Query: 261 FTSVAAQCLQKL-PSSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIK 437
+ S A Q +KL S + T TF+Y+++ G Y V+ + +++ A+LE +
Sbjct: 33 YQSQAKQLFRKLNEQSPTRCTLGAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 92
Query: 438 EDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMM 617
+F +++ G K T + EF +++ + +D L + ++ +V+ +M+
Sbjct: 93 SEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIMV 150
Query: 618 ENIEKVLDRGEKI 656
NIE+VL RGE +
Sbjct: 151 ANIEEVLQRGEAL 163
>gi|7493018|pir||T40099 probable synaptobrevin-type protein transport protein -
fission yeast (Schizosaccharomyces pombe)
>gi|4539261|emb|CAB39850.1| (AL049495) putative synaptobrevin-type
protein transport protein [Schizosaccharomyces pombe]
Length = 209
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 32/125 (25%), Positives = 62/125 (49%), Frame = +3
Query: 285 LQKL-PSSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYA 461
L++L P+S + + +TF+YL+DNG Y + +S R++ ++LE + +F +
Sbjct: 33 LKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSF- 91
Query: 462 GGKAATAAAHSLNREFGPKLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLD 641
G +A ++ + + P L K+ ++ +V VM +NIE +L
Sbjct: 92 GEEALQPGLRPYAFVQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLY 151
Query: 642 RGEKIE 659
RG+ +E
Sbjct: 152 RGDSLE 157
>gi|4885037|gb|AAD31930.1|U00031_9 (U00031) similar to synaptobrevin (Pfam:
PF00957, E= 3.8e-26) [Caenorhabditis elegans]
Length = 201
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 43/153 (28%), Positives = 72/153 (47%), Frame = +3
Query: 201 YSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFT-YC 377
+SF RG+V E+ FT + + N++ +C Y+ ++G + C
Sbjct: 30 FSFFQRGSVQ--EFMTFTAKLLVERSGLGARSSVKENEYLVHC------YVRNDGLSAVC 81
Query: 378 VVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPK-LKEEMQYCVDHP 554
V E R + ++FL R+ +DFT + + + G K L E+ Q +P
Sbjct: 82 VTDAEYQQR-VAMSFLGRVLDDFTTRVPATQWPGIRSDKDCSYTGLKDLLEKWQ----NP 136
Query: 555 EEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
E + +V+ +V E K VM I+ VLDRGEK++
Sbjct: 137 READPMTRVQEEVEETKMVMHNTIQSVLDRGEKLD 171
>gi|541870|pir||D44088 homeotic protein HAT24 - Arabidopsis thaliana (fragment)
Length = 60
Frame 3 hits (HSPs): ________________
Annotated Domains: _________________
__________________________________________________
Database sequence: | | | | 60
0 20 40
__________________
Annotated Domains:
PROSITE SYNAPTOBREVIN: Synaptobrevin signature. 8..27
__________________
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.00080, P = 0.00080
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +3
Query: 600 VKGVMMENIEKVLDRGEKIE 659
VKGVMMENIEKVLDRGEKIE
Sbjct: 1 VKGVMMENIEKVLDRGEKIE 20
>gi|7290852|gb|AAF46294.1| (AE003442) CG1515 gene product [Drosophila
melanogaster]
Length = 199
Frame 3 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.0017, P = 0.0017
Identities = 42/170 (24%), Positives = 74/170 (43%), Frame = +3
Query: 150 SSAAVVVPAAMGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNC 329
+S A ++ A QS +SF RGTV E+ F ++ + L S + Y C
Sbjct: 14 ASEARLLKTASDLQS--FSFFQRGTVN--EFMTFASK--TIVERTQPALRQSVKQDAYMC 67
Query: 330 DGHTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREF 509
H + DN ++A ++ + +I +DFT K + + +++ +
Sbjct: 68 --HVY-VRADN-LAGVLIADHEYPHRVAHTLITKILDDFTAKVSADQWPNGTEATISFDL 123
Query: 510 GPKLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
P Q +P E L K++ + E K ++ IE VL+RGEK++
Sbjct: 124 LPAFLARYQ----NPVEADPLTKMQNDLDETKIILKNTIEAVLERGEKLD 169
>gi|7487475|pir||T09023 hypothetical protein T27E11.80 - Arabidopsis thaliana
>gi|4972115|emb|CAB43972.1| (AL078579) putative protein
[Arabidopsis thaliana] >gi|7269637|emb|CAB81433.1| (AL161571)
putative protein [Arabidopsis thaliana]
Length = 260
Frame 3 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | | 260
0 50 100 150 200 250
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.0086, P = 0.0085
Identities = 32/146 (21%), Positives = 62/146 (42%), Frame = +3
Query: 186 QQSLIYSFVARGTVTLAEYT--EFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVD 359
Q+ L YS +A+GTV LAE+ E G +A +C++ +P ++ ++ T+ ++D
Sbjct: 5 QRMLFYSCIAKGTVILAEFASKEEPG-IEDLALRCIENVPPHHSMISHTVHKRTYALIID 63
Query: 360 NGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATA----AAHSLNREFGPKLKE 527
F+Y + E + + R+K G A + H L + P E
Sbjct: 64 GLFSYFAILDEVVAKSESVWLFNRLKSATESLMEDGSTADSLDNPTQHCLQSKLDPVFAE 123
Query: 528 EMQYCVDHPEEIS-RLAKVKAQVSEVK 605
+H +++ ++ E+K
Sbjct: 124 IAAIGGNHNKDLELEFGSPRSIAREIK 150
>gi|7512037|pir||T13477 synaptobrevin SEC22 homolog - fruit fly (Drosophila
melanogaster) >gi|4688674|emb|CAA20899.2| (AL031583)
/prediction=(method:""genscan"", version:""1.0"",
score:""94.97"")~/prediction=(method:""genefinder"",
version:""084"")~/match=(desc:""VESICLE TRAFFICKING PROTEIN
SEC22B"", species:""Mus musculus (Mouse)"",
ranges:(query:30771..30845, target> >gi|7290088|gb|AAF45554.1|
(AE003418) EG:34F3.8 gene product [Drosophila melanogaster]
Length = 211
Frame 3 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 211
0 50 100 150 200
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.0087, P = 0.0086
Identities = 25/104 (24%), Positives = 52/104 (50%), Frame = +3
Query: 336 HTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGP 515
+ F+YL++N Y V+ + +++ +LE + ++F Y G + + EF
Sbjct: 59 YLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDLAQEFHANY-GRRVNSVTRPYAFIEFDV 117
Query: 516 KLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRG 647
+++ + D IS + Q+ +V+ +M++NI+ VL RG
Sbjct: 118 YIQKAKKQLTDRRRNISN---INTQLQDVQRIMVQNIDDVLQRG 158
>gi|422323|pir||S35107 hypothetical protein 2 - Euplotes crassus
>gi|159034|gb|AAA29129.1| (M73025) ORF2 [Euplotes crassus]
Length = 110
Frame 3 hits (HSPs): _________________
Annotated Domains: ______________________________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
__________________
Annotated Domains:
DOMO DM00708: SYNAPTOBREVIN 29..110
__________________
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.030, P = 0.029
Identities = 14/36 (38%), Positives = 26/36 (72%), Frame = +3
Query: 552 PEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
PEE ++ K+K +++EV +M +N+E +L RGE ++
Sbjct: 44 PEEADKIYKIKTELTEVTDIMHKNMEDLLKRGESLD 79
>gi|8809588|dbj|BAA97139.1| (AB018116) gene_id:MNB8.5~pir||T09023~similar to
unknown protein [Arabidopsis thaliana]
Length = 272
Frame 3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | 272
0 50 100 150 200 250
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.037, P = 0.036
Identities = 30/118 (25%), Positives = 55/118 (46%), Frame = +3
Query: 195 LIYSFVARGTVTLAEY-TEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDN-GF 368
L Y+ +A+GTV LAE+ + ++A +C++ P ++ F++ T+ + +D+ F
Sbjct: 8 LSYTCIAKGTVVLAEFVSRQEPGIEAIALRCIENTPPHHSMFSHTVHKKTYTFAIDDDSF 67
Query: 369 TYCVVAVESAGRQIPIAFLERIK---EDFTKKYAGGKAATA---AAHSLNREFGPKLKE 527
Y ++ ES + L R++ ED K G T +H L + P E
Sbjct: 68 VYFSISDESMEKPESFWVLNRLRSAIEDLIKD-GGSDVETLINPVSHCLQLKLDPVFAE 125
>gi|7511661|pir||T33239 synaptobrevin SNB-1 - Caenorhabditis elegans
>gi|2196766|gb|AAB61234.1| (AF003281) SNB-1; synaptobrevin
[Caenorhabditis elegans] >gi|2196768|gb|AAB61235.1| (AF003282)
SNB-1; synaptobrevin [Caenorhabditis elegans]
>gi|3193208|gb|AAC19234.1| (AF067949) C. elegans synaptobrevin
SNB-1 (GB:AF003282) [Caenorhabditis elegans]
Length = 109
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | | 109
0 20 40 60 80 100
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.038, P = 0.037
Identities = 16/30 (53%), Positives = 23/30 (76%), Frame = +3
Query: 567 RLAKVKAQVSEVKGVMMENIEKVLDRGEKI 656
RL + +AQV EV G+M N+EKVL+R +K+
Sbjct: 23 RLQQTQAQVDEVVGIMKVNVEKVLERDQKL 52
>gi|4097561|gb|AAD00112.1| (U64918) ATGP1 [Arabidopsis thaliana]
>gi|9759531|dbj|BAB10997.1| (AB024029) ATGP1 [Arabidopsis thaliana]
>gi|11762228|gb|AAG40392.1|AF325040_1 (AF325040) K21L19.5
[Arabidopsis thaliana]
Length = 199
Frame 3 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.039, P = 0.038
Identities = 38/153 (24%), Positives = 70/153 (45%), Frame = +3
Query: 201 YSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFTYCV 380
+ + R +V E+ F G +VA++ S Y + N L GF
Sbjct: 30 FGYFQRSSVK--EFVVFVGR--TVASRTPPSQRQSVQHEEYKVHAYNRNGLCAVGFMDDH 85
Query: 381 VAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKLKEEMQYCVDHPEE 560
V SA + L ++ +++ K + G++ +A N+ + P L E + D P E
Sbjct: 86 YPVRSA-----FSLLNQVLDEYQKSF--GESWRSAKEDSNQPW-PYLTEALNKFQD-PAE 136
Query: 561 ISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+L K++ ++ E K ++ + I+ VL RGEK++
Sbjct: 137 ADKLLKIQRELDETKIILHKTIDSVLARGEKLD 169
>gi|7486316|pir||T04067 hypothetical protein F28M11.90 - Arabidopsis thaliana
>gi|4538981|emb|CAB39769.1| (AL049487) putative protein
[Arabidopsis thaliana] >gi|7267713|emb|CAB78140.1| (AL161516)
putative protein [Arabidopsis thaliana]
Length = 254
Frame 3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | || 254
0 50 100 150 200 250
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.043, P = 0.042
Identities = 29/104 (27%), Positives = 44/104 (42%), Frame = +3
Query: 201 YSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLVDNGFTYCV 380
Y V+R L Y S+AA CL+K P + + F +L+ +GF Y
Sbjct: 10 YCCVSRDNQILYSYNGGDQTNESLAALCLEKSPPFHTWYFETIGKRRFGFLIGDGFVYFA 69
Query: 381 VAVESAGRQIPIAFLERIKEDFTKKYAGGKAA--TAAAHSLNRE 506
+ E R + FLE ++++F K TA S+N E
Sbjct: 70 IVDEVLKRSSVLKFLEHLRDEFKKAARENSRGSFTAMIGSINVE 113
>gi|9845465 ref|NP_064279.1| pr170 [rat cytomegalovirus Maastricht]
>gi|9800392|gb|AAF99266.1|AF232689_165 (AF232689) pr170 [rat
cytomegalovirus Maastricht]
Length = 107
Frame -2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | | 107
0 20 40 60 80 100
Minus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.064, P = 0.062
Identities = 23/56 (41%), Positives = 30/56 (53%), Frame = -2
Query: 317 ELVVGGREFLEALRRHAGEVSGELGVLR*GHGAASDEAVDQRLLSHRRRNYNRRRT 150
E V GG +E +RR G+V E+G R G G + D R+ + RRR NRR T
Sbjct: 41 EKVEGGNG-VE-VRRRGGKVESEMGKKRKGKGKKDRRSGDGRIRASRRRRTNRRGT 94
>gi|123706|sp|P14402|HSP_COTJA SPERM HISTONE (PROTAMINE) >gi|104502|pir||A34356
protamine - Japanese quail >gi|213613|gb|AAA49498.1| (M30275)
protamine [Coturnix japonica]
Length = 57
Frame -2 hits (HSPs): ___________________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 57
0 20 40
__________________
Annotated Domains:
DOMO DM01168: PROTAMINEP1 1..55
Entrez phosphorylation site: (POTENTIAL). 9
PFAM protamine_P1: Protamine P1 1..55
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..55
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.082, P = 0.079
Identities = 23/56 (41%), Positives = 27/56 (48%), Frame = -2
Query: 194 RLLSHRRRNYNRRRTNNTARFRKEGDAVSG*GERKKRPYGSRERKGGRRRTRRLRY 27
R S RRR RRR++ R+ G R R G R R+ GRRR RR RY
Sbjct: 10 RSRSRRRRRSRRRRSSRRRRY--------GRSRRSYRSVGRRRRRYGRRRRRRRRY 57
>gi|3859996|gb|AAC72948.1| (AF091079) SNARE protein Ykt6 [Homo sapiens]
Length = 191
Frame 3 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.11, P = 0.10
Identities = 37/166 (22%), Positives = 76/166 (45%), Frame = +3
Query: 162 VVVPAAMGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHT 341
V++ AA S +SF R +V E+ FT + + + +S + Y C H
Sbjct: 17 VLLKAAYDVSS--FSFFQRSSVQ--EFMTFTSQL--IVERSSKGTRASVKEQDYLC--HV 68
Query: 342 FNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKL 521
Y+ ++ V+A ++ LE++ ++F+K+ + +++ P L
Sbjct: 69 --YVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHY---PAL 123
Query: 522 KEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ +P E + KV+A++ E K ++ +E +L+RGEK++
Sbjct: 124 DGHLSR-YQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLD 168
>gi|5730120 ref|NP_006546.1| SNARE protein [Homo sapiens] >gi|11422283
ref|XP_004993.1| TR00067404_p [Homo sapiens]
>gi|2507637|gb|AAB81131.1| (U95735) SNARE protein Ykt6 [Homo
sapiens]
Length = 198
Frame 3 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.12, P = 0.11
Identities = 37/166 (22%), Positives = 76/166 (45%), Frame = +3
Query: 162 VVVPAAMGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGHT 341
V++ AA S +SF R +V E+ FT + + + +S + Y C H
Sbjct: 17 VLLKAAYDVSS--FSFFQRSSVQ--EFMTFTSQL--IVERSSKGTRASVKEQDYLC--HV 68
Query: 342 FNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKL 521
Y+ ++ V+A ++ LE++ ++F+K+ + +++ P L
Sbjct: 69 --YVRNDSLAGVVIADNEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHY---PAL 123
Query: 522 KEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+ +P E + KV+A++ E K ++ +E +L+RGEK++
Sbjct: 124 DGHLSR-YQNPREADPMTKVQAELDETKIILHNTMESLLERGEKLD 168
>gi|2642348|gb|AAD09152.1| (AF033027) prenylated SNARE protein Ykt6p [Rattus
norvegicus]
Length = 198
Frame 3 hits (HSPs): ________________________________________
__________________________________________________
Database sequence: | | | | | 198
0 50 100 150
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.12, P = 0.11
Identities = 41/167 (24%), Positives = 78/167 (46%), Frame = +3
Query: 159 AVVVPAAMGQQSLIYSFVARGTVTLAEYTEFTGNFTSVAAQCLQKLPSSNNKFTYNCDGH 338
AV++ AA S +SF R +V E+ FT + + + +S + Y C H
Sbjct: 16 AVLLKAAYDVSS--FSFFQRSSVQ--EFMTFTSQL--IVERSAKGSRASVKEQEYLC--H 67
Query: 339 TFNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKK-----YAGGKAATAAAHSLNR 503
Y+ + V+A ++ LE++ + F+K+ + G AT +L+
Sbjct: 68 V--YVRSDSLAGVVIADSEYPSRVAFTLLEKVLDQFSKQVDTIDWPVGSPATIHYTALDG 125
Query: 504 EFGPKLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
+Y +P E ++KV+A++ E K ++ +E +L+RGEK++
Sbjct: 126 HLS-------RY--QNPREADPMSKVQAELDETKIILHNTMESLLERGEKLD 168
>gi|3157951|gb|AAC17634.1| (AC002131) Contains similarity to vesicle
trafficking protein gb|U91538 from Mus musculus. ESTs gb|F15494
and gb|F14097 come from this gene. [Arabidopsis thaliana]
Length = 263
Frame 3 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | 263
0 50 100 150 200 250
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.18, P = 0.16
Identities = 25/106 (23%), Positives = 54/106 (50%), Frame = +3
Query: 342 FNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYAGGKAATAAAHSLNREFGPKL 521
F+Y+++ Y + S +++ +LE +K +F ++ G TAA +F +
Sbjct: 107 FSYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEF-ERVNGPNIETAARPYAFIKFDTFI 165
Query: 522 KEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
++ + D + +AK+ ++ EV +M N+++VL GEK++
Sbjct: 166 QKTKKLYQDTRTQ-RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLD 210
>gi|2134213|pir||B58213 protamine I - American alligator
Length = 62
Frame -2 hits (HSPs): ____________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
Minus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.30, P = 0.26
Identities = 22/54 (40%), Positives = 30/54 (55%), Frame = -2
Query: 179 RRRNYNRRR-TNNTARFRKEGDAVSG*G---ERKKRPYGSRERKGGRRRTRRLR 30
R R+ RRR +N+ R+R+ SG G +R+ GSR R+ RRR RR R
Sbjct: 9 RSRSRRRRRWSNHGGRYRRRRTRRSGGGRYGQRRHHRGGSRRRRRRRRRRRRRR 62
Score = 67 (23.6 bits), Expect = 2.3, P = 0.90
Identities = 20/50 (40%), Positives = 27/50 (54%), Frame = -2
Query: 179 RRRNYNRRR-TNNTARFRKEGDAVSG*GERKKRPYGSRERKGGRRRTRRLR 30
R R+ RRR +N+ R+R+ SG G +R R +GG RR RR R
Sbjct: 9 RSRSRRRRRWSNHGGRYRRRRTRRSGGGRYGQR----RHHRGGSRRRRRRR 55
>gi|123705|sp|P15340|HSP_CHICK SPERM HISTONE (PROTAMINE) (GALLINE)
>gi|104836|pir||A34326 protamine - chicken
>gi|609436|gb|AAA58721.1| (L38713) protamine [Gallus gallus]
>gi|609437|gb|AAA78951.1| (M28100) protamine [Gallus gallus]
Length = 62
Frame -2 hits (HSPs): ____________________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | | 62
0 20 40 60
__________________
Annotated Domains:
DOMO DM01168: PROTAMINEP1 1..60
Entrez phosphorylation site: (POTENTIAL). 9
PFAM protamine_P1: Protamine P1 1..60
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 2..60
PROSITE PROTAMINE_P1: Protamine P1 signature. 2..13
__________________
Minus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.30, P = 0.26
Identities = 22/51 (43%), Positives = 26/51 (50%), Frame = -2
Query: 179 RRRNYNRRRTNNTARFRKEGDAVSG*GERKKRPYGSRERKGGRRRTRRLRY 27
RRR RRR+ R R+ G A R +R G R R+ G RR RR RY
Sbjct: 19 RRRRSGRRRSPR--RRRRYGSA-----RRSRRSVGGRRRRYGSRRRRRRRY 62
>gi|8052277|emb|CAB39075.2| (AL034559) hypothetical protein, PFC0890w
[Plasmodium falciparum]
Length = 221
Frame 3 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.36, P = 0.30
Identities = 31/133 (23%), Positives = 63/133 (47%), Frame = +3
Query: 288 QKLPSSNNKFTYNCDGHTFNYLVDNGFTYCVVAVESAGRQIPIAFLERIKEDFTKKYA-- 461
+KL S N T + +++L++NG Y V + +++ FL I + F ++
Sbjct: 37 KKLYSFPNLSTVTSNNFNYHFLIENGIAYIAVFPVTYPKKLAFLFLNDICKQFNEELMIQ 96
Query: 462 -GGKAAT--AAAHSLNR-----EFGPKLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMM 617
G + + ++ + +F K+ + Q D I+ + K+ ++EV +M
Sbjct: 97 YGTHSIDYRSIIETIEKPYSFIKFDRKITKIKQEYKDPRSNIA-IKKLNESLNEVSSIMK 155
Query: 618 ENIEKVLDRGEKIE 659
+NI+ +L RGE +E
Sbjct: 156 KNIDDILMRGENLE 169
>gi|2134206|pir||A58208 protamine I-1 - painted turtle
Length = 58
Frame -2 hits (HSPs): ___________________________________________
Annotated Domains: __________
__________________________________________________
Database sequence: | | | | 58
0 20 40
__________________
Annotated Domains:
PROSITE PROTAMINE_P1: Protamine P1 signature. 1..12
__________________
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.38, P = 0.32
Identities = 20/49 (40%), Positives = 27/49 (55%), Frame = -2
Query: 176 RRNYNRRRTNNTARFRKEGDAVSG*GERKKRPYGSRER-KGGRRRTRRLR 30
R NR R+ + R R+ G G R++R +G R R + GR RTRR R
Sbjct: 2 RYRRNRSRSRSRRRRRRRGGRGGRRGRRRRR-HGQRRRGRRGRERTRRRR 50
>gi|11430059 ref|XP_002561.1| vesicle-associated membrane protein 8 [Homo
sapiens]
Length = 100
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 100
0 20 40 60 80
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.38, P = 0.32
Identities = 12/31 (38%), Positives = 23/31 (74%), Frame = +3
Query: 567 RLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
R+ ++++V VK +M +N+E++L RGE +E
Sbjct: 12 RVRNLQSEVEGVKNIMTQNVERILARGENLE 42
>gi|6319289 ref|NP_009372.1| homolog of Snc2p, vesicle-associated membrane
protein (synaptobrevin) homolog, forms a complex with Snc2p and
Sec9p; Snc1p [Saccharomyces cerevisiae]
>gi|401107|sp|P31109|SNC1_YEAST SYNAPTOBREVIN HOMOLOG 1
>gi|320861|pir||S31250 synaptobrevin homolog SNC1 - yeast
(Saccharomyces cerevisiae) >gi|172655|gb|AAA35069.1| (M91157)
synaptobrevin [Saccharomyces cerevisiae] >gi|595555|gb|AAC05002.1|
(U12980) Snc1p: Vesicle-associated membrane protein,synaptobrevin
homolog [Saccharomyces cerevisiae]
Length = 117
Frame 3 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | 117
0 50 100
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.45, P = 0.36
Identities = 18/56 (32%), Positives = 33/56 (58%), Frame = +3
Query: 492 SLNREFGP-KLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKI 656
S + F P L E + + + SR A+++A++ + G+M +NI KV +RGE++
Sbjct: 2 SSSTPFDPYALSEHDEERPQNVQSKSRTAELQAEIDDTVGIMRDNINKVAERGERL 57
>gi|6729809|pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
>gi|6729813|pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
>gi|6729817|pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | 96
0 20 40 60 80
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 0.49, P = 0.39
Identities = 14/30 (46%), Positives = 22/30 (73%), Frame = +3
Query: 567 RLAKVKAQVSEVKGVMMENIEKVLDRGEKI 656
RL + +AQV EV +M N++KVL+R +K+
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 60
>gi|607014|gb|AAA58348.1| (M83895) protamine 1 [Cavia porcellus]
Length = 46
Frame -1 hits (HSPs): ________________________________________
Frame -2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 46
0 20 40
Minus Strand HSPs:
Score = 49 (17.2 bits), Expect = 0.57, Sum P(2) = 0.43
Identities = 11/24 (45%), Positives = 13/24 (54%), Frame = -1
Query: 147 QHREIQKRRRRCLRLRREKETTVR 76
+ R +RRRRC R RR T R
Sbjct: 18 RRRRFYRRRRRCHRRRRRLYQTSR 41
Score = 40 (14.1 bits), Expect = 0.57, Sum P(2) = 0.43
Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = -1
Query: 246 RC--TPLGSRCRERR 208
RC +P SRCR RR
Sbjct: 5 RCCRSPSRSRCRRRR 19
Score = 38 (13.4 bits), Expect = 8.2, Sum P(2) = 1.0
Identities = 10/21 (47%), Positives = 14/21 (66%), Frame = -2
Query: 95 RKKRPYGSRERKGGRRRTRRL 33
R++R + R R+ RRR RRL
Sbjct: 17 RRRRRFYRRRRRCHRRR-RRL 36
>gi|4097579|gb|AAD00116.1| (U64922) NTGP1 [Nicotiana tabacum]
Length = 199
Frame 3 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 199
0 50 100 150
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.64, P = 0.47
Identities = 30/108 (27%), Positives = 54/108 (50%), Frame = +3
Query: 336 HTFNYLVDNGFTYCVVAVESAGRQIPIAF--LERIKEDFTKKYAGGKAATAAAHSLNREF 509
H++N NG C + + AF L ++ +++ K + G T S N +
Sbjct: 69 HSYNR---NGL--CALGFMDDHYPVRSAFSLLNQVLDEYLKNF-GESWKTV--QSDNAQP 120
Query: 510 GPKLKEEMQYCVDHPEEISRLAKVKAQVSEVKGVMMENIEKVLDRGEKIE 659
P L E + D P E +L K++ ++ E K ++ + I+ VL+RGEK++
Sbjct: 121 WPYLNEALAKFQD-PAEADKLFKIQRELDETKIILHKTIDSVLERGEKLD 169
>gi|1082603|pir||S53365 mucin 5AC (clone CEL2) - human (fragment)
>gi|563373|emb|CAA84030.1| (Z34276) mucin [Homo sapiens]
Length = 94
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | | 94
0 20 40 60 80
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 0.64, P = 0.47
Identities = 26/58 (44%), Positives = 34/58 (58%), Frame = +1
Query: 202 TASSLAAP*P*RSTPSSPETSPAWRRSASRNSLPPTTSSLTTAMATPSTTSLITDSLT 375
TAS+ +A ST S P T+P+ + S S+P TTS TT+ +T STTS T S T
Sbjct: 9 TASTTSASTT--STTSGPGTTPSPVPTTSTISVP-TTS--TTSASTTSTTSASTTSTT 61
WARNING: HSPs involving 61 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.318 0.131 0.363
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.356 0.158 0.621
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.341 0.145 0.443
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.356 0.157 0.582
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.331 0.142 0.425
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.145 0.450
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 219 219 10. 77 3 12 22 0.10 35
32 0.12 38
+2 0 219 219 10. 77 3 12 22 0.10 35
32 0.12 38
+1 0 220 220 10. 77 3 12 22 0.10 35
32 0.12 38
-1 0 220 220 10. 77 3 12 22 0.10 35
32 0.12 38
-2 0 219 219 10. 77 3 12 22 0.10 35
32 0.12 38
-3 0 219 219 10. 77 3 12 22 0.10 35
32 0.12 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 111
No. of states in DFA: 590 (58 KB)
Total size of DFA: 205 KB (256 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 251.37u 0.87s 252.24t Elapsed: 00:01:30
Total cpu time: 251.41u 0.91s 252.32t Elapsed: 00:01:30
Start: Wed Jan 16 22:43:30 2002 End: Wed Jan 16 22:45:00 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000