BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= PI0693
(382 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|150004598|ref|YP_001299342.1| putative iron-related ABC ... 340 9e-92
gi|156858591|gb|EDO52022.1| hypothetical protein BACUNI_045... 315 4e-84
gi|154489800|ref|ZP_02030061.1| hypothetical protein PARMER... 259 3e-67
gi|150010000|ref|YP_001304743.1| iron(III) ABC transporter ... 256 2e-66
gi|150005589|ref|YP_001300333.1| putative exported periplas... 186 2e-45
gi|53713481|ref|YP_099473.1| iron(III) ABC transporter peri... 182 2e-44
gi|60681725|ref|YP_211869.1| putative exported periplasmic ... 180 1e-43
gi|150007662|ref|YP_001302405.1| putative exported periplas... 179 3e-43
gi|34540468|ref|NP_904947.1| lipoprotein, putative [Porphyr... 179 3e-43
gi|154492942|ref|ZP_02032568.1| hypothetical protein PARMER... 178 6e-43
gi|149372081|ref|ZP_01891351.1| putative iron-related ABC t... 177 9e-43
gi|75812443|ref|YP_320062.1| Periplasmic binding protein [A... 177 1e-42
gi|17231523|ref|NP_488071.1| periplasmic-binding protein of... 176 2e-42
gi|120435439|ref|YP_861125.1| ABC-type transporter periplas... 176 3e-42
gi|150005603|ref|YP_001300347.1| putative exported periplas... 175 4e-42
gi|88711966|ref|ZP_01106053.1| periplasmic-binding protein ... 171 8e-41
gi|86133357|ref|ZP_01051939.1| Periplasmic binding protein ... 169 2e-40
gi|88806448|ref|ZP_01121965.1| iron(III) ABC transporter, p... 167 9e-40
gi|148657194|ref|YP_001277399.1| periplasmic binding protei... 166 3e-39
gi|86142723|ref|ZP_01061162.1| periplasmic-binding protein ... 164 8e-39
gi|146297849|ref|YP_001192440.1| periplasmic binding protei... 163 2e-38
gi|156860227|gb|EDO53658.1| hypothetical protein BACUNI_029... 162 3e-38
gi|60680711|ref|YP_210855.1| putative iron-related ABC tran... 162 3e-38
gi|53712512|ref|YP_098504.1| iron(III) ABC transporter peri... 162 4e-38
gi|89891465|ref|ZP_01202970.1| putative iron(III) ABC trans... 158 5e-37
gi|88802819|ref|ZP_01118346.1| periplasmic-binding protein ... 158 5e-37
gi|68552680|ref|ZP_00592067.1| Periplasmic binding protein ... 157 1e-36
gi|76260846|ref|ZP_00768474.1| Periplasmic binding protein ... 157 1e-36
gi|156742220|ref|YP_001432349.1| periplasmic binding protei... 157 1e-36
gi|86132363|ref|ZP_01050958.1| putative iron-related ABC tr... 154 6e-36
gi|67917543|ref|ZP_00511149.1| Periplasmic binding protein ... 153 2e-35
gi|126661896|ref|ZP_01732895.1| periplasmic-binding protein... 152 5e-35
gi|88601589|ref|YP_501767.1| periplasmic binding protein [M... 151 6e-35
gi|126646694|ref|ZP_01719204.1| periplasmic-binding protein... 151 8e-35
gi|68231768|ref|ZP_00570930.1| Periplasmic binding protein ... 149 3e-34
gi|21673249|ref|NP_661314.1| iron(III) ABC transporter, per... 148 6e-34
gi|156107103|gb|EDO08848.1| hypothetical protein BACOVA_047... 148 6e-34
gi|29347362|ref|NP_810865.1| Fe3+ ABC transporter, periplas... 147 8e-34
gi|53714316|ref|YP_100308.1| iron(III) ABC transporter peri... 147 9e-34
gi|83857625|ref|ZP_00951153.1| periplasmic-binding protein ... 146 2e-33
gi|150025519|ref|YP_001296345.1| Probable ABC-type iron(III... 141 7e-32
gi|91216389|ref|ZP_01253356.1| periplasmic-binding protein ... 138 5e-31
gi|156109621|gb|EDO11366.1| hypothetical protein BACOVA_032... 132 4e-29
gi|153808822|ref|ZP_01961490.1| hypothetical protein BACCAC... 130 2e-28
gi|124002395|ref|ZP_01687248.1| periplasmic-binding protein... 127 2e-27
gi|50841598|ref|YP_054825.1| periplasmic-binding protein [P... 126 2e-27
gi|34540449|ref|NP_904928.1| iron compound ABC transporter,... 118 8e-25
gi|50841597|ref|YP_054824.1| periplasmic-binding protein of... 115 4e-24
gi|21673252|ref|NP_661317.1| hypothetical protein CT0413 [C... 114 1e-23
gi|29347508|ref|NP_811011.1| Fe3+ ABC transporter, periplas... 113 2e-23
gi|67917540|ref|ZP_00511146.1| putative iron complex transp... 104 8e-21
gi|67917521|ref|ZP_00511127.1| putative iron complex transp... 103 2e-20
gi|15669068|ref|NP_247873.1| hypothetical protein MJ0878 [M... 103 3e-20
gi|119873437|ref|YP_931444.1| periplasmic binding protein [... 102 3e-20
gi|126460126|ref|YP_001056404.1| periplasmic binding protei... 97 1e-18
gi|68552677|ref|ZP_00592064.1| putative iron complex transp... 93 3e-17
gi|18311894|ref|NP_558561.1| hypothetical protein PAE0367 [... 93 3e-17
gi|28211051|ref|NP_781995.1| ferrichrome-binding periplasmi... 91 1e-16
gi|150400556|ref|YP_001324322.1| ABC-type Fe3+-hydroxamate ... 89 5e-16
gi|145592332|ref|YP_001154334.1| periplasmic binding protei... 89 6e-16
gi|15669063|ref|NP_247867.1| hypothetical protein MJ0872 [M... 87 1e-15
gi|15895706|ref|NP_349055.1| Ferrichrome-binding periplasmi... 85 6e-15
gi|47117895|sp|Q58282|Y872_METJA Uncharacterized lipoprotei... 85 8e-15
gi|126700620|ref|YP_001089517.1| putative iron ABC transpor... 75 5e-12
gi|145953445|ref|ZP_01802453.1| hypothetical protein CdifQ_... 75 5e-12
gi|150398887|ref|YP_001322654.1| periplasmic binding protei... 70 2e-10
gi|106895383|ref|ZP_01362479.1| iron compound ABC transport... 69 7e-10
gi|42526261|ref|NP_971359.1| iron compound ABC transporter,... 64 1e-08
gi|118579685|ref|YP_900935.1| ABC-type Fe3+-hydroxamate tra... 63 3e-08
gi|153810499|ref|ZP_01963167.1| hypothetical protein RUMOBE... 61 1e-07
gi|113938277|ref|ZP_01424146.1| periplasmic binding protein... 59 6e-07
gi|150400549|ref|YP_001324315.1| periplasmic binding protei... 59 6e-07
>gi|150004598|ref|YP_001299342.1| putative iron-related ABC transport periplasmic binding protein
[Bacteroides vulgatus ATCC 8482]
gi|149933022|gb|ABR39720.1| putative iron-related ABC transport periplasmic binding protein
[Bacteroides vulgatus ATCC 8482]
Length = 378
Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats.
Identities = 170/374 (45%), Positives = 236/374 (63%), Gaps = 7/374 (1%)
Query: 14 SLILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKK 73
SL ++L+L L F +++ A+ + + +YAEN+ + T D L NPW
Sbjct: 5 SLFIHLMLSVLLFSSCGGRSKTASV-IEAEKAIPLRYAENLNLSATEDYTIARLRNPWDT 63
Query: 74 GKTLHTYYLV--EDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADA 131
+ LHTY LV E + A+ P +GTLV+ P+ + V +++ H L+ +GA +I GV D
Sbjct: 64 TRILHTYVLVDKEKSLPADLP-EGTLVRTPLSKAVVYSSVHCGLLNQIGALKSIGGVCDL 122
Query: 132 KYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIPI 191
KY+ + +VQ +T +IAD G+GM PDIEKIID+ PD ++LSPFENSGGYG+++++ IPI
Sbjct: 123 KYIKLQEVQDGCRTGSIADVGNGMNPDIEKIIDLHPDAIMLSPFENSGGYGRVEKLNIPI 182
Query: 192 IECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLP 251
IECA+YMETSALGRAEW++FYG LFG Q ADSLF VE NY LKA SV+
Sbjct: 183 IECADYMETSALGRAEWMRFYGLLFGEAQKADSLFAEVEKNYNELKALVAPLSSAPSVIS 242
Query: 252 DRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSY 311
+ K GS WY+PGG+S+ +Y DA Y FAD+ SGS+ L FETV DK ADFW+ Y
Sbjct: 243 ELKNGSAWYVPGGKSTSARIYADAGANYVFADDEHSGSVPLAFETVFDKGQNADFWLIKY 302
Query: 312 YGGFNK--QQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHP 369
+K ++L +Y YT + FK IYGC K ++E+ + PD LL DLI++FHP
Sbjct: 303 NQAIDKTYKELEQDYAPYTGFRAFKERNIYGCNTGKVDFYEDSPFHPDRLLKDLIKIFHP 362
Query: 370 DLRSG-SMRYYHRL 382
L G ++Y+ +L
Sbjct: 363 TLLEGYELKYFTKL 376
>gi|156858591|gb|EDO52022.1| hypothetical protein BACUNI_04576 [Bacteroides uniformis ATCC 8492]
Length = 272
Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats.
Identities = 147/270 (54%), Positives = 192/270 (71%), Gaps = 3/270 (1%)
Query: 116 MEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPF 175
M+ LG +I GV D KY+ +P V + + IADCGDGM PD+E+IID+ PD +LLSPF
Sbjct: 1 MDNLGVFGSIGGVCDLKYIKLPAVHEACRRGAIADCGDGMNPDMERIIDLHPDAILLSPF 60
Query: 176 ENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLA 235
ENSGGYG+++++ IPIIECA+YMETSALGRAEW++FYG LFG ADSLF V+S Y
Sbjct: 61 ENSGGYGRIEKLDIPIIECADYMETSALGRAEWMRFYGLLFGVAPQADSLFAEVDSCYQR 120
Query: 236 LKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFE 295
LK +A+ S + SV+ + K+GS WY+PGG S++G L++DA G+YAFAD+ SGS+ L FE
Sbjct: 121 LKMRAQLSSTSFSVVSELKSGSAWYVPGGRSTIGRLFQDACGRYAFADDTHSGSVPLAFE 180
Query: 296 TVLDKAGQADFWIFSYY--GGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVS 353
TV DKAG AD W+ Y L A+Y GYT K FKT +YGC K P++EE
Sbjct: 181 TVFDKAGDADVWLVKYNRDRDMTYADLEADYIGYTGFKAFKTRNVYGCNTAKVPFYEETP 240
Query: 354 WRPDWLLSDLIQLFHPDLRS-GSMRYYHRL 382
+RPD+LLSDLIQ+ HP++ G +RY+ RL
Sbjct: 241 FRPDYLLSDLIQILHPEIGDLGGLRYFCRL 270
>gi|154489800|ref|ZP_02030061.1| hypothetical protein PARMER_00028 [Parabacteroides merdae ATCC
43184]
gi|154089525|gb|EDN88569.1| hypothetical protein PARMER_00028 [Parabacteroides merdae ATCC
43184]
Length = 375
Score = 259 bits (661), Expect = 3e-67, Method: Composition-based stats.
Identities = 144/380 (37%), Positives = 210/380 (55%), Gaps = 18/380 (4%)
Query: 13 KSLILYLLLLNLCFGCSNNKAQ-MANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPW 71
K + +++L+ C K Q A N T T+ +YA+ + V + +PW
Sbjct: 2 KRICFFVILVLWAVSCIQPKVQNSAGNNLLTSDTI--RYAQGFIVHHFDGYTAVEVRDPW 59
Query: 72 KKGKTLHTYYLVE-DASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVAD 130
+ L Y LV+ D E GT+VQVP + V +T+ HA +++ LG I GV +
Sbjct: 60 DSTRLLQRYLLVDRDRPVPENLPKGTVVQVPAQNVVVYTSVHAAIIDQLGETGRIIGVCE 119
Query: 131 AKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIP 190
+YM P +++ L+ IAD G+ P++E +ID + +++SPF+NSG YG ++++ IP
Sbjct: 120 PRYMDTPAIREGLKAGRIADMGEATAPNVEMMIDKGAELVIVSPFQNSG-YGPVEKLGIP 178
Query: 191 IIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVL 250
IIE A+YME+ LGR EWI+FYG LFG + ADS+F+ E +YL LK + +V+
Sbjct: 179 IIEGADYMESLPLGRTEWIRFYGMLFGKEALADSIFRQTEKSYLDLKQLVTADMPHPTVI 238
Query: 251 PDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFS 310
++K G+ W+MP G+S + +Y DA Y F + +GS L FETVLD+A AD W+
Sbjct: 239 SEKKFGASWFMPAGDSYIANMYADAGADYVFKELPGAGSTPLAFETVLDRAIHADMWLIK 298
Query: 311 Y-------YGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDL 363
Y YG L AEY Y FK IY C PY+EE PD+LL DL
Sbjct: 299 YNQSEDMTYG-----DLRAEYAPYENFDAFKNRRIYSCNTGLVPYYEEFPLHPDYLLKDL 353
Query: 364 IQLFHPDLRSG-SMRYYHRL 382
I +FHP+L G S RYY ++
Sbjct: 354 IWVFHPELLPGYSPRYYRKM 373
>gi|150010000|ref|YP_001304743.1| iron(III) ABC transporter periplasmic iron-binding protein
[Parabacteroides distasonis ATCC 8503]
gi|149938424|gb|ABR45121.1| iron(III) ABC transporter periplasmic iron-binding protein
[Parabacteroides distasonis ATCC 8503]
Length = 372
Score = 256 bits (653), Expect = 2e-66, Method: Composition-based stats.
Identities = 142/371 (38%), Positives = 209/371 (56%), Gaps = 10/371 (2%)
Query: 19 LLLLNLCF---GCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGK 75
L+LL F C+ + Q ++ A + + +YA+ ++R V + +PW +
Sbjct: 4 LILLGFAFWMVACTPSGKQTSSKEALSSDRI--QYAQGFTVQRFDTYTMVEVRDPWDSTR 61
Query: 76 TLHTYYLVEDASKAEKP-TDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYM 134
L Y LV+ GT+V+VP+K V +T+ HA +++ L N + GV + +YM
Sbjct: 62 LLQRYLLVDRTKSVPGGLPKGTIVKVPVKDIVVYTSVHAAIIDQLHEINKVIGVCEPRYM 121
Query: 135 LIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIPIIEC 194
P +Q+ +Q IAD G+ P+IEK+I+I + ++ SPF+NS YG +++I IPIIE
Sbjct: 122 DTPAIQEGIQAGRIADLGEATSPNIEKMIEIGAELVIASPFQNSS-YGPVEKIGIPIIEG 180
Query: 195 AEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRK 254
A+YME LGR EWI+FYG LFG ++ ADS+FK E YL+LK + + +VL ++K
Sbjct: 181 ADYMEAFPLGRTEWIRFYGLLFGKEEMADSIFKETEQAYLSLKNLTVNIDKRPTVLSEKK 240
Query: 255 TGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSY--Y 312
GS WY+P G+S + L++DA Y F D +GS L FETV DKA AD W+ Y
Sbjct: 241 FGSSWYIPAGDSYMAHLFEDAGADYMFKDLPGAGSTPLAFETVFDKAIHADIWLVKYNQS 300
Query: 313 GGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLR 372
L +EY Y FK IY C PY+EE P++LL DLI +FHP+L
Sbjct: 301 SEMTYNDLRSEYTPYENFDAFKKQRIYTCNTGIVPYYEEFPLHPEYLLKDLIWIFHPELV 360
Query: 373 SG-SMRYYHRL 382
G S RY+ ++
Sbjct: 361 PGYSPRYFSKM 371
>gi|150005589|ref|YP_001300333.1| putative exported periplasmic protein [Bacteroides vulgatus ATCC
8482]
gi|149934013|gb|ABR40711.1| putative exported periplasmic protein [Bacteroides vulgatus ATCC
8482]
Length = 383
Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats.
Identities = 118/373 (31%), Positives = 181/373 (48%), Gaps = 10/373 (2%)
Query: 19 LLLLNLCFGCSNNKAQMANT---NAPTDSTLVF---KYAENIKMERTSDGIKVTLSNPWK 72
LLLL C N Q + TDS++V +YA+ K+ T + + +P
Sbjct: 10 LLLLLTVTACQNKHKQGSGNLEHKTLTDSSIVKIIPEYAQGFKITYTDQACLLDIQDPQN 69
Query: 73 KGKTLHTYYLVEDASKAEK-PTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADA 131
K Y LV +AE P D T+++ P++ + T+ + L +A+ G+
Sbjct: 70 KESQSFHYALVPRGVEAENIPADYTVIETPIRSVICMTSLQLSNFIKLEELDAVVGITST 129
Query: 132 KYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIPI 191
+++ + RL+ +I G D E I+ + PD +L+SPF+ GGY L E+ IP+
Sbjct: 130 RHLFNKKINDRLKDGSIHKIGIEGNFDNEVIMSVNPDLILISPFKR-GGYDALKEVGIPL 188
Query: 192 IECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLP 251
+ Y E + LG+AEWIKF G L G + A+ F ++ Y LK + V
Sbjct: 189 MPHLGYKEMTPLGQAEWIKFVGLLLGREDKANKQFAAIKKRYNELKELTGRVTKRPVVFS 248
Query: 252 DRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFW--IF 309
G WY GG S + L+KDA Y D+ +SG + L FETV +A AD+W +
Sbjct: 249 GELRGGNWYAVGGRSFLAQLFKDAGADYFLKDDEQSGGVTLDFETVYSQAAGADYWRIVN 308
Query: 310 SYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHP 369
SY G F+ L E Y K +K + C + + P++E + P+ +L+DLIQ+FHP
Sbjct: 309 SYQGEFSYNTLKEEDARYVDFKAYKEKGVIYCNMREKPFYESMPTEPEVVLADLIQIFHP 368
Query: 370 DLRSGSMRYYHRL 382
L SG Y+ L
Sbjct: 369 QLLSGHQPGYYEL 381
>gi|53713481|ref|YP_099473.1| iron(III) ABC transporter periplasmic iron-binding protein
[Bacteroides fragilis YCH46]
gi|52216346|dbj|BAD48939.1| iron(III) ABC transporter periplasmic iron-binding protein
[Bacteroides fragilis YCH46]
Length = 382
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 119/382 (31%), Positives = 193/382 (50%), Gaps = 11/382 (2%)
Query: 11 MRKSLILYLLLLNLCF-GC--SNNKAQMANTNAPTDSTLVF---KYAENIKMERTSDGIK 64
M++ LI LL + GC NN+ T +D++ V YA+ K+ T
Sbjct: 1 MKQFLIGCALLACISLAGCRPKNNQNVTIVTGEVSDTSSVRITPVYAKGFKVTYTPTCRL 60
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEK-PTDGTLVQVPMKRGVFFTTAHANLMEMLGAQN 123
V +S+P K+G Y LV +K E P T+++ P+K + T+ + L A N
Sbjct: 61 VDISDPQKEGGESFHYALVPGGTKPENIPAGYTVIETPVKSVICMTSLQLSNFIKLDALN 120
Query: 124 AIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGK 183
+ G+ +++ ++ +RL+ A G D E I+ + PD + +SPF+ GGY
Sbjct: 121 HVVGITSTRHLFNKEMNERLKQGKTAKIGIEGNFDNEVIMSVNPDVIFISPFKR-GGYDA 179
Query: 184 LDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSS 243
+ E+ IP++ Y E + LG+AEWIKF G G +++A+ F +E +Y LK +
Sbjct: 180 MREVGIPLVPHLGYKEMTPLGQAEWIKFIGLFIGEEETANRKFAAIEKHYNELKERVAHV 239
Query: 244 KQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQ 303
K+ V G WY GG+S + L++DA Y D+ +SG + L FETV +A
Sbjct: 240 KKRPVVFSGEIRGGNWYAVGGKSFLAQLFRDAGADYFLKDDPRSGGVTLDFETVYSQAES 299
Query: 304 ADFW--IFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLS 361
AD+W + S+ G F+ L +E Y + F+ + C + + P++E + +P+ +L
Sbjct: 300 ADYWRIVNSFDGTFSYDVLKSEDTRYADFRAFREKGVIYCNMREKPFYESMPTQPEVVLE 359
Query: 362 DLIQLFHPDLRSG-SMRYYHRL 382
DLI+ FHPDL + YY RL
Sbjct: 360 DLIKAFHPDLLPDYTPVYYERL 381
>gi|60681725|ref|YP_211869.1| putative exported periplasmic protein [Bacteroides fragilis NCTC
9343]
gi|60493159|emb|CAH07940.1| putative exported periplasmic protein [Bacteroides fragilis NCTC
9343]
Length = 382
Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats.
Identities = 118/382 (30%), Positives = 193/382 (50%), Gaps = 11/382 (2%)
Query: 11 MRKSLILYLLLLNLCF-GC--SNNKAQMANTNAPTDSTLVF---KYAENIKMERTSDGIK 64
M++ LI LL + GC NN+ T +D++ V YA+ K+ T
Sbjct: 1 MKQFLIGCALLACISLAGCRSKNNQNVTIVTGEVSDTSSVRITPVYAKGFKVTYTPTCRL 60
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEK-PTDGTLVQVPMKRGVFFTTAHANLMEMLGAQN 123
V +S+P K+G Y LV +K E P T+++ P+K + T+ + L A +
Sbjct: 61 VDISDPQKEGGESFHYALVPGGTKPENIPAGYTVIETPVKSVICMTSLQLSNFIKLDALS 120
Query: 124 AIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGK 183
+ G+ +++ ++ +RL+ A G D E I+ + PD + +SPF+ GGY
Sbjct: 121 HVVGITSTRHLFNKEMNERLKQGKTAKIGIEGNFDNEVIMSVNPDVIFISPFKR-GGYDA 179
Query: 184 LDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSS 243
+ E+ IP++ Y E + LG+AEWIKF G G +++A+ F +E +Y LK +
Sbjct: 180 MREVGIPLVPHLGYKEMTPLGQAEWIKFIGLFIGEEETANRKFAAIEKHYNELKERVAHV 239
Query: 244 KQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQ 303
K+ V G WY GG+S + L++DA Y D+ +SG + L FETV +A
Sbjct: 240 KKRPVVFSGEIRGGNWYAVGGKSFLAQLFRDAGADYFLKDDPRSGGVTLDFETVYSQAES 299
Query: 304 ADFW--IFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLS 361
AD+W + S+ G F+ L +E Y + F+ + C + + P++E + +P+ +L
Sbjct: 300 ADYWRIVNSFDGTFSYDVLKSEDPRYADFRAFREKGVIYCNMREKPFYESMPTQPEVVLE 359
Query: 362 DLIQLFHPDLRSG-SMRYYHRL 382
DLI+ FHPDL + YY RL
Sbjct: 360 DLIKAFHPDLLPDYTPVYYERL 381
>gi|150007662|ref|YP_001302405.1| putative exported periplasmic protein [Parabacteroides distasonis
ATCC 8503]
gi|149936086|gb|ABR42783.1| putative exported periplasmic protein [Parabacteroides distasonis
ATCC 8503]
Length = 387
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 107/340 (31%), Positives = 175/340 (51%), Gaps = 9/340 (2%)
Query: 50 YAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEK-PTDGTLVQVPMKRGVFF 108
YA+ K+ + + +P + T Y V+ +K P D T++++P++ +
Sbjct: 49 YAQGFKLTYADQYLLADIQDPQNEESTTFHYAFVKRGAKPTGIPADYTVIELPIRSVICM 108
Query: 109 TTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPD 168
T+ + LGA + + G+ +++ ++ +RL+ A G D E I+ + PD
Sbjct: 109 TSLQLSNFIKLGALDRVVGITSTRHLFNKEMNERLKEGKTAKIGIEGNFDNEVIMSVNPD 168
Query: 169 GLLLSPFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKV 228
+L+SPF+ GGY L ++ IP+I Y ET+ LG+AEWIKF G L G ++ + F
Sbjct: 169 LILVSPFKR-GGYEMLKDVGIPLIPHLGYKETTPLGQAEWIKFVGLLLGIEKDGNERFAT 227
Query: 229 VESNYLALK---AKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNN 285
+E Y LK A K K+ + V G WY GG+S + L+KDA Y D+
Sbjct: 228 IEKRYNELKELTADGKVKKRPI-VFSGELRGGNWYAVGGKSFLAQLFKDAGADYFLKDDE 286
Query: 286 KSGSLALPFETVLDKAGQADFW--IFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQV 343
+SG + L FETV ++A AD+W + S+ G F+ + L + Y + F+ I C +
Sbjct: 287 RSGGVTLDFETVYNQADDADYWRIVNSFPGTFSYEALKEQDPRYEDFRAFREKGIIYCNM 346
Query: 344 DKTPYFEEVSWRPDWLLSDLIQLFHPDLRSGSMR-YYHRL 382
TP++E + P+ +L+DL+ +FHPDL YY RL
Sbjct: 347 KNTPFYESMPTEPEIVLADLLHIFHPDLLPDHESVYYSRL 386
>gi|34540468|ref|NP_904947.1| lipoprotein, putative [Porphyromonas gingivalis W83]
gi|34396781|gb|AAQ65846.1| lipoprotein, putative [Porphyromonas gingivalis W83]
Length = 379
Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats.
Identities = 111/381 (29%), Positives = 189/381 (49%), Gaps = 8/381 (2%)
Query: 5 RKYSFTMRKSLILYLLLLNLCFGCSNNKAQ-MANTNAPTDSTLVFKYAENIKMERTSDGI 63
++YS T S IL+L+ GC+ + Q T+A + +L +YAE +++
Sbjct: 2 KRYSVTFFLSAILFLI----GAGCNRTRTQEQKATSAISSDSLHPQYAEGFRLDAGEGCY 57
Query: 64 KVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQN 123
+++ +P ++ + + LV + P T V +P++R V TT + L AQ+
Sbjct: 58 LLSIEDPQQESHKEYRFALVPKGTYPVIPEGYTAVTIPVERVVCMTTLQLSNFIALDAQS 117
Query: 124 AIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGK 183
+AG++ +Y+ ++ +LQ G D E ++ ++PD +L+SPF+ GGY
Sbjct: 118 LVAGISSTRYLRDSVMKAQLQDGRTHKIGIEGNFDREVVMSLQPDLILISPFKR-GGYDV 176
Query: 184 LDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSS 243
L+++ +P+I Y E + LG+ EW+K G L G A F +E+ Y L A
Sbjct: 177 LEQVSVPLIPHLGYKELTPLGQTEWVKLIGLLTGQYDKACRFFSEIETRYHTLTGYADEV 236
Query: 244 KQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQ 303
V G WY GG+S + +DA G+Y D+ +SG ++L FETV ++
Sbjct: 237 TDRPIVFSGEMRGGNWYAVGGKSYLAQQIRDAGGEYFLKDDQRSGGVSLDFETVYSRSDS 296
Query: 304 ADFW--IFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLS 361
A +W + SY G F + L AE Y + FK + C + +T ++E + PDW+L+
Sbjct: 297 ARYWRILNSYPGEFGYEALKAEDSRYADFRAFKEKGVIYCNLRETAFYELMPMHPDWVLA 356
Query: 362 DLIQLFHPDLRSGSMRYYHRL 382
DLI + HP L +++ L
Sbjct: 357 DLIAILHPGLLPDHQPHFYYL 377
>gi|154492942|ref|ZP_02032568.1| hypothetical protein PARMER_02584 [Parabacteroides merdae ATCC
43184]
gi|154087247|gb|EDN86292.1| hypothetical protein PARMER_02584 [Parabacteroides merdae ATCC
43184]
Length = 375
Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats.
Identities = 110/359 (30%), Positives = 185/359 (51%), Gaps = 9/359 (2%)
Query: 31 NKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAE 90
+K + +A + +V +YA + S + + + +P + T Y LV +K
Sbjct: 18 DKVETTEESAFSGVHIVPEYARGFVLSYRSGYVLLDIQDPQNEESTTFHYALVRRGTKPS 77
Query: 91 K-PTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIA 149
P T+++ P++ V T+ + +G + + GV +++ ++ +RL++ A
Sbjct: 78 GIPGSYTVIETPIRSVVCMTSLQLSNFIKMGELDKVVGVTSTRHLFNREMNERLKSGKTA 137
Query: 150 DCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWI 209
G D E I+ + PD +L+SPF+ GGY L ++ IP+I Y E + LG+AEW+
Sbjct: 138 KIGIEGNFDNEVIMSMNPDLILVSPFKR-GGYETLKDVGIPLIPHLGYKEMTPLGQAEWV 196
Query: 210 KFYGFLFGCKQSADSLFKVVESNYLALK---AKAKSSKQTLSVLPDRKTGSVWYMPGGES 266
KF G L G +Q A+ F + + Y LK A+ K K+ + VL G WY GGES
Sbjct: 197 KFVGLLVGQEQKANETFDAIAARYNELKELTAEGKVKKRPV-VLSGEMRGGNWYAVGGES 255
Query: 267 SVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFW--IFSYYGGFNKQQLLAEY 324
+ L+KDA Y ++ +SG + L FETV ++ +AD+W + SY G F+ + L +
Sbjct: 256 FLAQLFKDAGADYFLKNDKRSGGVTLDFETVYNQGDEADYWRIVNSYPGTFSYEALKEQD 315
Query: 325 QGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSG-SMRYYHRL 382
Y + F+ I C + TP++E + P+ +L+DL+ +FHPDL + YY RL
Sbjct: 316 PRYADFRAFREKGIIYCNMKDTPFYESMPTEPEVVLADLLHIFHPDLLPDHTPVYYARL 374
>gi|149372081|ref|ZP_01891351.1| putative iron-related ABC transport periplasmic binding protein
[unidentified eubacterium SCB49]
gi|149354848|gb|EDM43410.1| putative iron-related ABC transport periplasmic binding protein
[unidentified eubacterium SCB49]
Length = 377
Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats.
Identities = 111/367 (30%), Positives = 185/367 (50%), Gaps = 23/367 (6%)
Query: 21 LLNLCFG-----CSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGK 75
L+LC G C+ NK + N T +A+ + + +T++NPW + K
Sbjct: 6 FLSLCIGLILLSCNENKTSLEVENTKTTEV---NFAKGFTISSNENLTIITITNPWPEAK 62
Query: 76 TLHTYYLVEDASKAEKPTDG---TLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAK 132
Y LV+D + K +G +V+VP+ V +T H +EMLG + ++ G
Sbjct: 63 KSFRYALVKDEASV-KSLEGKYDAVVKVPLTDIVVTSTTHIPSLEMLGVEKSLVGFPSLN 121
Query: 133 YMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFE-NSGGYGKLDEIKIPI 191
Y+ +K + I + G + E +I++ P ++ + N+ + ++++ P+
Sbjct: 122 YISSQKTRKHISEGKIKELGKNESINTEMLIELNPQAVIGFGIDGNNPTFNTIEKLGTPV 181
Query: 192 IECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLP 251
+ A++ E LG+AEWIKF+G L+G ++ ADS+F +E NY + AK++ + ++L
Sbjct: 182 LYNADWTEKHPLGKAEWIKFFGALYGKQKEADSIFSEIERNYNEAQKIAKTATTSPTILS 241
Query: 252 DRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSY 311
VWYMP G+S DANG Y + D+ +GS+AL E+VL+K A WI
Sbjct: 242 GAMYKDVWYMPQGDSWAAQFIADANGDYLWKDSEGTGSIALNLESVLEKGQNAQIWISP- 300
Query: 312 YGGFNKQQLLAE-YQGYTALKPFKTGEIYGCQVDKTP------YFEEVSWRPDWLLSDLI 364
G F + LAE + YT FK ++Y +KT Y+E RPD +L D+I
Sbjct: 301 -GQFKSTEQLAEMHHMYTQFDAFKNDKVYNF-TNKTGATGGVIYYELAPNRPDIVLKDII 358
Query: 365 QLFHPDL 371
++ HP+L
Sbjct: 359 KILHPEL 365
>gi|75812443|ref|YP_320062.1| Periplasmic binding protein [Anabaena variabilis ATCC 29413]
gi|75705199|gb|ABA24873.1| Periplasmic binding protein [Anabaena variabilis ATCC 29413]
Length = 400
Score = 177 bits (448), Expect = 1e-42, Method: Composition-based stats.
Identities = 105/327 (32%), Positives = 166/327 (50%), Gaps = 12/327 (3%)
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEKP-TDGTLVQVPMKRGVFFTTAHANLMEMLGAQN 123
VT+ NPW+ KT Y LV+ + + ++ VP+ V +T H + L +
Sbjct: 72 VTIKNPWQNAKTQFQYVLVQCGTPTPQGFKQAQVITVPINSIVSLSTTHLPHLAKLDVVD 131
Query: 124 AIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPF----ENSG 179
+ GV++ K + P+V +R++T I G+ DIEK++ + PD L++ F +
Sbjct: 132 KLIGVSNIKQVNTPEVIERIKTGNITQVGNNSNVDIEKLLALNPD--LVTTFGTGNSQTD 189
Query: 180 GYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAK 239
Y KL E + + AEYME + LGR+EW+KF F + A+ +F + Y + AK
Sbjct: 190 SYSKLTEAGLKVGINAEYMEDTPLGRSEWLKFTALFFNQEAKAEKIFSEIAQKYTQIAAK 249
Query: 240 AKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLD 299
A+S K SV W+MP G S V DA G Y ++D+ +GSL L FE VL+
Sbjct: 250 AQSVKYRPSVFVGFNFKGTWFMPAGNSYVAKYLADAGGNYLWSDDKSNGSLPLSFEVVLE 309
Query: 300 KAGQADFWIFSYYGGFNKQQLLAEYQGYTALKPFKTGEIY--GCQVDK---TPYFEEVSW 354
+A AD+W+ G N + L+ E Y + KTG +Y +V+ Y+E
Sbjct: 310 RAANADYWLNFSQGWQNVKDLITEDNRYADFQAVKTGNLYNNNARVNANGGNDYWEGGIS 369
Query: 355 RPDWLLSDLIQLFHPDLRSGSMRYYHR 381
PD +L+DLI++ HP++ +Y+R
Sbjct: 370 NPDIVLADLIKILHPEILPNHQLFYYR 396
>gi|17231523|ref|NP_488071.1| periplasmic-binding protein of ABC transporter [Nostoc sp. PCC
7120]
gi|17133166|dbj|BAB75730.1| periplasmic-binding protein of ABC transporter [Nostoc sp. PCC
7120]
Length = 426
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 105/329 (31%), Positives = 171/329 (51%), Gaps = 13/329 (3%)
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEKP-TDGTLVQVPMKRGVFFTTAHANLMEMLGAQN 123
VT+ NPW+ KT Y LV+ + + ++ VP+ V +T H + LG +
Sbjct: 98 VTIKNPWQNAKTQFQYVLVQCGTPTPQGFKQAQVITVPIHSIVSLSTTHLPHLAKLGVVD 157
Query: 124 AIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPF----ENSG 179
+ G++++K + PDV +R++ I G+ DIE+++++ PD L++ F +
Sbjct: 158 KLIGISNSKQVNTPDVVERIKAGKITQVGNNSNVDIERLLELNPD--LVTTFGTGNSQTD 215
Query: 180 GYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAK 239
Y KL E + + AEYME + LGR+EW+KF F ++ A+ +F + Y + K
Sbjct: 216 SYSKLTEAGLKVGINAEYMEDTPLGRSEWLKFTALFFNQEEKAEKIFAEITDKYEQVAQK 275
Query: 240 AKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLD 299
KS K +V W+MPGG S V DA G Y +++ +GSL L FE VL+
Sbjct: 276 VKSVKNRPTVFVGFNFKGTWFMPGGNSYVAKYLADAGGDYLWSNEQSAGSLPLSFEVVLE 335
Query: 300 KAGQADFWIFSYYGGFNKQQLLAEYQGYTALKPFKTGEIY--GCQVDKT---PYFEEVSW 354
+A AD+W+ + + LLAE Y K K G +Y +V+++ Y+E
Sbjct: 336 RATNADYWLNFSQSWQSLKDLLAEDNRYADFKSVKIGNLYNNNARVNESGGNDYWEGGIS 395
Query: 355 RPDWLLSDLIQLFHPD-LRSGSMRYYHRL 382
PD +LSDLI++ HP+ L + + YYH++
Sbjct: 396 NPDIVLSDLIRILHPEILPNHQLFYYHKI 424
>gi|120435439|ref|YP_861125.1| ABC-type transporter periplasmic binding protein [Gramella forsetii
KT0803]
gi|117577589|emb|CAL66058.1| ABC-type transporter periplasmic binding protein [Gramella forsetii
KT0803]
Length = 377
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 111/369 (30%), Positives = 185/369 (50%), Gaps = 13/369 (3%)
Query: 11 MRKSLILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNP 70
M+K + ++LLL C N+++ +V A ++ + D + ++ P
Sbjct: 1 MKKIIFVFLLL---CISSCKNESEGKTAEIQQGKEVVISNARGFQITKFDDYSLMQVNTP 57
Query: 71 WKKGKTLHTYYLVE-DASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVA 129
W + K Y L E DA E +V+VP+K+ V +T H +E L + +AG
Sbjct: 58 WPEAKDPFIYLLNEKDAEIPENIEYDQIVEVPVKKIVVTSTTHIPALEALEEEKTLAGFP 117
Query: 130 DAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSG-GYGKLDEIK 188
Y+ +K ++ ++++ G + E +ID+ PD ++ +S + + +
Sbjct: 118 GLNYISSEKTRKLIKNGSVSELGQNENINTEVLIDLSPDVVIGFAINSSNKSFETIQKTG 177
Query: 189 IPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLS 248
IP+I ++ E + LG+AEWIKF+G L+G ++ A +F+ ++ Y+ K AKS+K +
Sbjct: 178 IPVIYNGDWTELTPLGKAEWIKFFGALYGKEEKAAKIFQNIKDEYIKAKELAKSAKSSPK 237
Query: 249 VLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWI 308
V+ WYMP G S KDAN Y +AD GSL+L FE+VL+KA A++WI
Sbjct: 238 VISGSMYNDNWYMPYGNSWQAQFIKDANANYLYADTEGDGSLSLAFESVLEKAEDAEYWI 297
Query: 309 FSYYGGFNK-QQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSD 362
S G F +QL E + Y K K ++Y + + ++E RPD +L D
Sbjct: 298 SS--GQFTSYEQLFNESEHYRRFKAVKDEKVYSVSLFQGETGGIIFYELGPQRPDLILKD 355
Query: 363 LIQLFHPDL 371
LI +FHP+L
Sbjct: 356 LISIFHPEL 364
>gi|150005603|ref|YP_001300347.1| putative exported periplasmic protein [Bacteroides vulgatus ATCC
8482]
gi|149934027|gb|ABR40725.1| putative exported periplasmic protein [Bacteroides vulgatus ATCC
8482]
Length = 385
Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats.
Identities = 115/368 (31%), Positives = 177/368 (48%), Gaps = 10/368 (2%)
Query: 13 KSLILYLLLLNLCF-GCS-NNKAQMANTNAPTDST----LVFKYAENIKMERTSDGIKV- 65
K+ ++YLL+ C GC ++ ++ P+ T L +YA+ K+ DG+K+
Sbjct: 4 KTRLVYLLITTFCLAGCGYKSRNPVSENGLPSADTIQTALAPRYAKGFKITVRPDGVKLL 63
Query: 66 TLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAI 125
++S P + LV +KAE P T++ P R + TT L A + +
Sbjct: 64 SISEPNNNHAIPELFALVPKGTKAEIPDGYTVIPTPTDRVICMTTPQLAGFTGLNAYDKV 123
Query: 126 AGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLD 185
+ + M + RL+ + G D E II +PD + +SP GGY +
Sbjct: 124 VATSTTRRMQNKEWLARLKDGRVKKIGMEGNFDTEIIIASQPDIIFVSP-NRRGGYEVMK 182
Query: 186 EIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQ 245
E+ IP++ + ETS LG +EWIK G G ++ A LF +E Y LKAK + KQ
Sbjct: 183 ELNIPLVPYWAFKETSPLGLSEWIKVAGMFIGKEEEACQLFAQMEQRYNLLKAKVSNVKQ 242
Query: 246 TLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQAD 305
SV WY+PGG+S L+ DA Y DN ++G + + FETV K A
Sbjct: 243 RPSVFSGEMRRDTWYVPGGQSFYARLFADAGADYFMKDNPETGGVLMDFETVYAKGYNAG 302
Query: 306 FW--IFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDL 363
+W + Y G F+ + L A Y + FK ++ C ++ P +E + PD LLSD+
Sbjct: 303 YWRVMNGYKGEFSYEALKASNPQYADFRAFKEKKVIYCNLEWIPLYENLPLSPDVLLSDM 362
Query: 364 IQLFHPDL 371
I+ FHP+L
Sbjct: 363 IKAFHPEL 370
>gi|88711966|ref|ZP_01106053.1| periplasmic-binding protein of ABC transporter [Flavobacteriales
bacterium HTCC2170]
gi|88709372|gb|EAR01605.1| periplasmic-binding protein of ABC transporter [Flavobacteriales
bacterium HTCC2170]
Length = 381
Score = 171 bits (433), Expect = 8e-41, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 183/367 (49%), Gaps = 14/367 (3%)
Query: 16 ILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKV-TLSNPWKKG 74
IL +L + L KA++ N T+ST + +YA+ +E+ S+GI V +S+PW
Sbjct: 5 ILAILFVFLSSCKEAKKAELPNP-VTTNSTSI-EYAKGFTIEKQSNGITVMNISSPWPNA 62
Query: 75 KTLHTYYLVEDASKAE----KPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVAD 130
KT Y LV A K ++ P+ V +T H +E LG + G D
Sbjct: 63 KTGFKYALVPKDKMASISLNKNEFDAIIGTPINSMVATSTTHIPALEALGEIKKLTGFPD 122
Query: 131 AKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLL-LSPFENSGGYGKLDEIKI 189
+Y+ + R+ I + G+ + E +I+++P+ ++ S + Y L I
Sbjct: 123 TQYISSKKARNRIDEGKIKELGNNESINTEMVIELQPEVVIGFSINSQNKAYETLMRSNI 182
Query: 190 PIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSV 249
P++ ++ E + LG+AEWIKF+ F +Q ADS+FK + ++Y K+ AK +K +V
Sbjct: 183 PVVYNGDWTEETPLGKAEWIKFFAPFFQKEQLADSIFKEISNSYNQAKSLAKKAKNRPTV 242
Query: 250 LPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIF 309
L VWY+PGG S +DAN +Y ++DN ++GSL + E+VL + DFWI
Sbjct: 243 LSGALYKDVWYLPGGNSWAAKFIEDANTEYPWSDNEQTGSLNMSIESVLAEGHDTDFWI- 301
Query: 310 SYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLI 364
S + +++ Y K F+ IY K Y+E RPDW+L DLI
Sbjct: 302 SPSQFISYEEMKNANVHYLKFKAFQNKNIYTFANTKGDTGGLLYYELAPNRPDWVLKDLI 361
Query: 365 QLFHPDL 371
+FHP+L
Sbjct: 362 HIFHPEL 368
>gi|86133357|ref|ZP_01051939.1| Periplasmic binding protein [Tenacibaculum sp. MED152]
gi|85820220|gb|EAQ41367.1| Periplasmic binding protein [Polaribacter dokdonensis MED152]
Length = 375
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 110/369 (29%), Positives = 191/369 (51%), Gaps = 17/369 (4%)
Query: 11 MRKSLILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSN- 69
M+ ++ LL+++ C K ++ + + + + KYA+ ++ + +G+K L N
Sbjct: 1 MKIKILQVLLVVSCLIAC---KKEVKQNTSTSKTAITLKYAKGFEV-KIENGVKKLLVNA 56
Query: 70 PWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVA 129
P++ + + +D + K + +QVP++R V +T H ++E+L Q +I G
Sbjct: 57 PFQNANKTFEFVISKDTNPKNKIANS--IQVPIERMVVTSTTHIPMVELLNEQTSIVGFP 114
Query: 130 DAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSG--GYGKLDEI 187
++Y+ ++ + I + G +IE ++D++P L++ NS +++
Sbjct: 115 YSRYVSSKKTRQLIDDGKIVEIGKESSLNIEILLDLQPQ-LVVGYSVNSADKSLTTIEKS 173
Query: 188 KIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTL 247
IP+I +++E + LGRAEWIKF+G L+ ++ ADS+FK +E NYL KA K+ K
Sbjct: 174 GIPVIYNGDWLEETPLGRAEWIKFFGVLYNKEKKADSIFKSIEQNYLEAKALVKNLKDKP 233
Query: 248 SVLPDR-KTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADF 306
++L VW +P GES V KDAN Y + + GSL+L FE+V DK A++
Sbjct: 234 TILSGAIMNKDVWNLPAGESFVAQFLKDANLNYLWQNTVGKGSLSLSFESVFDKGATANY 293
Query: 307 WIFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLS 361
WI Y +K+ +L + Y FK EIY K Y+E RPD +L
Sbjct: 294 WIAPGYFS-SKEHMLKNNEIYKEFNAFKNDEIYTPSTKKGATGGIIYYEIAPTRPDLVLK 352
Query: 362 DLIQLFHPD 370
DLI++ +P+
Sbjct: 353 DLIKITNPE 361
>gi|88806448|ref|ZP_01121965.1| iron(III) ABC transporter, periplasmic iron-binding protein
[Robiginitalea biformata HTCC2501]
gi|88783280|gb|EAR14452.1| iron(III) ABC transporter, periplasmic iron-binding protein
[Robiginitalea biformata HTCC2501]
Length = 385
Score = 167 bits (424), Expect = 9e-40, Method: Composition-based stats.
Identities = 108/349 (30%), Positives = 173/349 (49%), Gaps = 18/349 (5%)
Query: 40 APTDSTLVFKYAENIKMERTSDGIK-VTLSNPWKKGKTLHTYYLVEDASKAE--KPTD-- 94
A D+ + YA+ + G+ +T+S+PW + + Y LV A P D
Sbjct: 30 AAVDNPVEIDYAKGFAAHTDASGVTYLTVSDPWPEASREYKYALVPRGKLAAITLPADTF 89
Query: 95 GTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDG 154
++ VP++R V +T H + L A ++ G Y+ P+V++R+ + + G
Sbjct: 90 DAIIPVPVERLVLTSTTHVPSLVALRATESLVGFPGLDYISSPEVRQRIDAGAVRELGAN 149
Query: 155 MKPDIEKIIDIKPD---GLLLSPFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKF 211
+ + E +++ P+ G +S + G Y + E IP+I ++MET+ LG+AEWIKF
Sbjct: 150 EQLNTELVLEAAPEVVVGFGIS--DAPGSYRGVREAGIPVIYNGDWMETNPLGKAEWIKF 207
Query: 212 YGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLL 271
+G L G A F+ VE+ Y + A + +VL VWY+PGGES
Sbjct: 208 FGLLLGSLPEAQQYFEEVEAAYQEARELAAKASTRPTVLSGALYRDVWYLPGGESWAAAF 267
Query: 272 YKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIF-SYYGGFNKQQLLAEYQGYTAL 330
+DA+ +Y +AD SGSL+L E VL+K A+FWI S Y ++ ++ ++ Y
Sbjct: 268 LEDAHAEYLYADTPGSGSLSLSLEAVLEKGVDAEFWISPSQYTSYS--EMASDNPHYEQF 325
Query: 331 KPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDLRSG 374
+ F+ I+G ++ YFE RPDW+L DLI HP L G
Sbjct: 326 RAFRERRIFGYASNRGSGGGLLYFEIGPNRPDWVLKDLIHHLHPGLLHG 374
>gi|148657194|ref|YP_001277399.1| periplasmic binding protein [Roseiflexus sp. RS-1]
gi|148569304|gb|ABQ91449.1| periplasmic binding protein [Roseiflexus sp. RS-1]
Length = 434
Score = 166 bits (419), Expect = 3e-39, Method: Composition-based stats.
Identities = 98/326 (30%), Positives = 164/326 (50%), Gaps = 11/326 (3%)
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEKPT-DGTLVQVPMKRGVFFTTAHANLMEMLGAQN 123
+T+ NPW+ Y LV+ + T D +++VP+ + +T H + LG +
Sbjct: 107 ITVLNPWRNADVQFRYVLVQCGTPPPTETGDALVIEVPVNSIITMSTTHLPHLSELGVLD 166
Query: 124 AIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENS--GGY 181
+ GV Y+ PDV+K+++ + + G G + ++E+ +D++PD ++ N +
Sbjct: 167 TLVGVDSFLYINNPDVRKKIEAGELVEIGGGGQVNVEQALDLQPDLIMTYGVGNPEYDAH 226
Query: 182 GKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAK 241
KL E + ++ +EYMETS LGRAEWIKF F + A ++ + S Y + AKA+
Sbjct: 227 PKLLEANLKVVLNSEYMETSPLGRAEWIKFTAAFFNREAKATEVYNTIVSRYKEIAAKAR 286
Query: 242 SSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKA 301
+ +V D WYMPGG S V L DA Y +AD+ +GS L FE V ++A
Sbjct: 287 NVATRPTVFGDAPFQGTWYMPGGRSYVAQLLADAGADYLWADDTSTGSQPLSFEEVFERA 346
Query: 302 GQADFWIFSYYGGFNK-QQLLAEYQGYTALKPFKTGEIYG-----CQVDKTPYFEEVSWR 355
ADFW+ G + ++ A + T F+ G ++ + Y+E
Sbjct: 347 RNADFWLNP--GSWKSLSEIKAADERLTGFAAFQNGNVFNNNKRLNENGGNDYWETGVTN 404
Query: 356 PDWLLSDLIQLFHPDLRSGSMRYYHR 381
P +L+DLI++FHP+L Y+++
Sbjct: 405 PHLVLADLIKIFHPELLPDHELYFYQ 430
>gi|86142723|ref|ZP_01061162.1| periplasmic-binding protein of ABC transporter [Flavobacterium sp.
MED217]
gi|85830755|gb|EAQ49213.1| periplasmic-binding protein of ABC transporter [Leeuwenhoekiella
blandensis MED217]
Length = 397
Score = 164 bits (415), Expect = 8e-39, Method: Composition-based stats.
Identities = 108/367 (29%), Positives = 168/367 (45%), Gaps = 13/367 (3%)
Query: 13 KSLILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWK 72
K+L + LL+ + C + N ++ +S YA+ +++ D + +S+ W
Sbjct: 23 KALCISLLIFHSCKDGNQNATEV---QVEQNSHATLSYAKGFQIDNYGDFKILKVSSAWP 79
Query: 73 KGKTLHTYYLVEDASKAEKPTDG-TLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADA 131
Y L + S A ++ P+ V +T H +E+LG + ++ G +
Sbjct: 80 GSTKTFKYLLHKKGSPAPDSIQADAVITTPISSIVVTSTTHIPALELLGVEKSLVGFPNL 139
Query: 132 KYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGG-YGKLDEIKIP 190
Y+ + + I + G + EK ID+ PD ++ E L IP
Sbjct: 140 DYISSEKTRALIDAGAIQELGQNEAINTEKAIDLNPDVVVSFGVEGENKTLSSLQRAHIP 199
Query: 191 IIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVL 250
+I ++ E S LG+AEWIKF+ L+ + ADS+F +E+ Y LK KA + +VL
Sbjct: 200 VIYNGDWTENSPLGQAEWIKFFAALYDKEAVADSIFNTIETQYNNLKEKALKATNQPTVL 259
Query: 251 PDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFS 310
VWY+P G+S L DAN Y + + + +GS AL E+VL+ A +ADFWI
Sbjct: 260 SGAMFKDVWYLPKGDSWAAQLVADANANYLYKNTSGTGSAALSIESVLNTAQKADFWIAP 319
Query: 311 YYGGFNKQQLLAEYQ-GYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLI 364
F LA YT FK IY K Y+E RPDW+L DL+
Sbjct: 320 --NAFESYDALANTNDAYTRFDAFKNKRIYSFASAKGATGGMLYYELAPSRPDWVLEDLV 377
Query: 365 QLFHPDL 371
+FHP+L
Sbjct: 378 AIFHPEL 384
>gi|146297849|ref|YP_001192440.1| periplasmic binding protein [Flavobacterium johnsoniae UW101]
gi|146152267|gb|ABQ03121.1| periplasmic binding protein [Flavobacterium johnsoniae UW101]
Length = 380
Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 115/367 (31%), Positives = 176/367 (47%), Gaps = 18/367 (4%)
Query: 16 ILYLLLLNLCFGCSNNK-AQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKG 74
++++ + FGC N+ +++A T+A +S +YA + + + D VT+SNPW
Sbjct: 8 LIFISSFFILFGCKKNETSEVAKTDAAKNS---IEYASGLSIVKYDDYSVVTVSNPWPNA 64
Query: 75 KTLHTYYLVEDASKAEKPTDG-TLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKY 133
Y L E +K T +Q+P++ V +T + +EML +N + G Y
Sbjct: 65 NKDFKYVLKEKEAKVPDSLQAYTSIQIPLESVVVTSTTNIPFLEMLEVENKLVGFPHTDY 124
Query: 134 MLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIK---IP 190
+ + + ++ + G K +IE++I++ PD L+ F LD +K +
Sbjct: 125 ISSEKTRALIDKGSVKNVGQNEKLNIEQLIELSPD--LIVTFGVDNNNPMLDNLKKSGLN 182
Query: 191 IIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVL 250
I+ ++ME S LG+AEWIK YG LFG ++ A LF + +Y K A + +VL
Sbjct: 183 ILIQGDWMEQSPLGKAEWIKLYGALFGKEEKAKELFDKIVQSYEQAKKLAAEKEVNSTVL 242
Query: 251 PDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFS 310
VWY+ G S V KDA+ Y +AD +GS L FE VLDKA A WI S
Sbjct: 243 YGSMYEDVWYVAKGNSWVAEFMKDAHANYLWADLKGTGSEGLSFEKVLDKAKTASVWIAS 302
Query: 311 YYGGFNK-QQLLAEYQGYTALKPFKTGEIYGCQ-----VDKTPYFEEVSWRPDWLLSDLI 364
G F +L Y FK +Y + T Y+E RPD +L D I
Sbjct: 303 --GSFKSLDELQKANPHYGEFDAFKNKNVYSFEGKLGATGGTVYYELAPSRPDLVLKDYI 360
Query: 365 QLFHPDL 371
++FHPDL
Sbjct: 361 KIFHPDL 367
>gi|156860227|gb|EDO53658.1| hypothetical protein BACUNI_02937 [Bacteroides uniformis ATCC 8492]
Length = 322
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 97/319 (30%), Positives = 158/319 (49%), Gaps = 4/319 (1%)
Query: 67 LSNPWKKGKTLHTYYLVEDASKAEK-PTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAI 125
+ +P K+ + Y LV K P+D T+++ P++ + T+ + L A + +
Sbjct: 3 IHDPQKESSSTFHYALVPKGIKPVGIPSDYTVIETPVEHVMCMTSLQLSNFIRLDACDYV 62
Query: 126 AGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLD 185
G+ +++ ++ RL++ G D E I+ + PD + +SPF+ GGY +
Sbjct: 63 VGITSTRHLFNKEMNDRLKSGETVKIGIEGNFDNEVIMSMNPDVIFISPFKR-GGYDAMR 121
Query: 186 EIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQ 245
EI IP++ Y E + LG+AEWIKF G G + A+ F +E Y LK A + K+
Sbjct: 122 EIGIPLVPHLGYKEMTPLGQAEWIKFIGMFIGQEVEANEKFAAIEKRYNELKELAANVKK 181
Query: 246 TLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQAD 305
V G WY GG+S + L++DA Y D+ +SG + L FETV +A AD
Sbjct: 182 RPMVFSGEIRGGNWYAVGGKSFLAELFRDAGADYFLKDDPRSGGVTLDFETVYSQAESAD 241
Query: 306 FW--IFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDL 363
+W + SY G F L + Y + F+ + C + + P++E + +P+ +L DL
Sbjct: 242 YWRIVNSYDGTFTYDALKSLDPRYADFRAFREKGVVYCNMREKPFYESMPMQPEIVLEDL 301
Query: 364 IQLFHPDLRSGSMRYYHRL 382
I FHPDL Y+ L
Sbjct: 302 IHAFHPDLLPDYKPTYYEL 320
>gi|60680711|ref|YP_210855.1| putative iron-related ABC transport periplasmic binding protein
[Bacteroides fragilis NCTC 9343]
gi|60492145|emb|CAH06908.1| putative iron-related ABC transport periplasmic binding protein
[Bacteroides fragilis NCTC 9343]
Length = 380
Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 185/372 (49%), Gaps = 22/372 (5%)
Query: 12 RKSLILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPW 71
R S +L+ L+ L C + + ++NT T L YA+ + +S +T+ NPW
Sbjct: 4 RFSFVLFALISLLLTACQDKQKVVSNTENGTSVPL--SYAQGFGITHSSGYTTITVYNPW 61
Query: 72 KKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADA 131
K G+ TYYLV++ +A PTDG V +P+K + + H +E+LG + + GV ++
Sbjct: 62 KPGEIYDTYYLVKNEGQA-VPTDGLKVVIPLKSIMTNSATHLGFLELLGELDKVTGVCNS 120
Query: 132 KYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPF----ENSGGYGKLDEI 187
Y+ P + + ++ TI D GD DIE ++ + P ++ S + ENS ++ +
Sbjct: 121 NYIYNPTILQGVKDGTIKDLGDAFNLDIENLLLLHPQAVMTSAYNAEDENSR---RMKQT 177
Query: 188 KIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTL 247
+PI+ E+ E S LGRAEWIKF G F ++ ADS+F + Y +K KA+
Sbjct: 178 GLPILYNIEWQEKSILGRAEWIKFIGAFFDKEKLADSIFSQIAEQYNEIKKKAEKLSYAP 237
Query: 248 SVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFA-DNNKSGSLALPFETVLDKAGQADF 306
S+L + W MP G S L++DA Y +A D SGS++ E L QAD
Sbjct: 238 SILSGQDYRGTWSMPSGRSYNAQLFRDAGANYYYANDTTVSGSISSSIEEALIHFNQADI 297
Query: 307 WIFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDK-------TPYFEEVSWRPDWL 359
W+ + L Y K +K G +Y ++K Y+E RPD L
Sbjct: 298 WVGVQANTL--EDLGKMDPKYKLFKSYKNGNVY--HINKRTNITGGNDYWESGVARPDLL 353
Query: 360 LSDLIQLFHPDL 371
L+D+I++ HP L
Sbjct: 354 LNDMIKIIHPSL 365
>gi|53712512|ref|YP_098504.1| iron(III) ABC transporter periplasmic iron-binding protein
[Bacteroides fragilis YCH46]
gi|52215377|dbj|BAD47970.1| iron(III) ABC transporter periplasmic iron-binding protein
[Bacteroides fragilis YCH46]
Length = 379
Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats.
Identities = 118/372 (31%), Positives = 185/372 (49%), Gaps = 22/372 (5%)
Query: 12 RKSLILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPW 71
R S +L+ L+ L C + + ++NT T L YA+ + +S +T+ NPW
Sbjct: 3 RFSFVLFALISLLLTACQDKQKVVSNTENGTSVPL--SYAQGFGITHSSGYTTITVYNPW 60
Query: 72 KKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADA 131
K G+ TYYLV++ +A PTDG V +P+K + + H +E+LG + + GV ++
Sbjct: 61 KPGEIYDTYYLVKNEGQA-VPTDGLKVVIPLKSIMTNSATHLGFLELLGELDKVTGVCNS 119
Query: 132 KYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPF----ENSGGYGKLDEI 187
Y+ P + + ++ TI D GD DIE ++ + P ++ S + ENS ++ +
Sbjct: 120 NYIYNPTILQGVKDGTIKDLGDAFNLDIENLLLLHPQAVMTSAYNAEDENSR---RMKQT 176
Query: 188 KIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTL 247
+PI+ E+ E S LGRAEWIKF G F ++ ADS+F + Y +K KA+
Sbjct: 177 GLPILYNIEWQEKSILGRAEWIKFIGAFFDKEKLADSIFSQIAEQYNEIKKKAEKLSYAP 236
Query: 248 SVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFA-DNNKSGSLALPFETVLDKAGQADF 306
S+L + W MP G S L++DA Y +A D SGS++ E L QAD
Sbjct: 237 SILSGQDYRGTWSMPSGRSYNAQLFRDAGANYYYANDTTVSGSISSSIEEALIHFNQADI 296
Query: 307 WIFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDK-------TPYFEEVSWRPDWL 359
W+ + L Y K +K G +Y ++K Y+E RPD L
Sbjct: 297 WVGVQANTL--EDLGKMDPKYKLFKSYKNGNVY--HINKRTNIAGGNDYWESGVARPDLL 352
Query: 360 LSDLIQLFHPDL 371
L+D+I++ HP L
Sbjct: 353 LNDMIKIVHPSL 364
>gi|89891465|ref|ZP_01202970.1| putative iron(III) ABC transporter periplasmic iron-binding protein
[Flavobacteria bacterium BBFL7]
gi|89516239|gb|EAS18901.1| putative iron(III) ABC transporter periplasmic iron-binding protein
[Flavobacteria bacterium BBFL7]
Length = 385
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 95/357 (26%), Positives = 176/357 (49%), Gaps = 17/357 (4%)
Query: 28 CSNNKAQMANTNAPTD----STLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLV 83
C NN++ + + KYA + T G ++++NPW + +++ LV
Sbjct: 17 CKNNESSTTKEKVKVSKDDYTNVEVKYATGFVINSTETGYYISINNPWPEADLEYSFKLV 76
Query: 84 EDASKAEK---PTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQ 140
+ +S +E+ P ++ +P+++ + +T H + +L Q++I G Y+ V+
Sbjct: 77 KGSSTSERLPEPDASQIINIPLQKIILSSTTHIPPVVLLQEQSSIIGFPGTDYISDSSVR 136
Query: 141 KRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGG-YGKLDEIKIPIIECAEYME 199
+ I + G +EK++ ++PD ++ + Y + IP+I +++E
Sbjct: 137 ALIDDGKIEELGQNQTISVEKVVTMQPDLVMGYGIDGDNPVYESIQRAGIPVIYNGDWIE 196
Query: 200 TSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVW 259
LG+AEWIK +G L+G ++ A+ +FK +E YL K A++ ++ SV+ W
Sbjct: 197 KHPLGKAEWIKLFGVLYGKEKEANRIFKEIEKEYLETKKLAQAF-ESPSVIAGATWKDTW 255
Query: 260 YMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQ 319
Y+P G S G + DA+G Y +++ +GSL+ E VL A AD WI G + +
Sbjct: 256 YLPYGNSWQGKIIADAHGDYVYSNTTGTGSLSYNVERVLTDAHNADIWIAP--GQYTSYK 313
Query: 320 LLAE-YQGYTALKPFKTGEIYGCQVD-----KTPYFEEVSWRPDWLLSDLIQLFHPD 370
+ E Y+ FK ++Y ++ Y+EE S RPD +L DL+++ HP+
Sbjct: 314 AMKEDNSAYSQFDAFKNRKVYTFALNVGARGGVTYYEEASMRPDLVLKDLVKILHPN 370
>gi|88802819|ref|ZP_01118346.1| periplasmic-binding protein of ABC transporter [Polaribacter
irgensii 23-P]
gi|88781677|gb|EAR12855.1| periplasmic-binding protein of ABC transporter [Polaribacter
irgensii 23-P]
Length = 370
Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats.
Identities = 111/363 (30%), Positives = 180/363 (49%), Gaps = 16/363 (4%)
Query: 16 ILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGK 75
++ LL+++ F K + S++ + +I +E K+ + P++ K
Sbjct: 4 LITTLLVSIFFISCKEKTATSTQKISKKSSIQYATGFDIIIEGNQK--KLIIKQPYQNAK 61
Query: 76 TLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYML 135
TY L S +K +++P++ V +T H ++E+L +N + G +++
Sbjct: 62 QTFTYLLTNTTSIPKKT-----IKIPLENVVVTSTTHIAMLELLHLENLLVGFPKTRFIS 116
Query: 136 IPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLL-LSPFENSGGYGKLDEIKIPIIEC 194
+KR+ IA+ G + + EK+I++ P ++ N+ Y + I +
Sbjct: 117 SVKTRKRIDDGFIAELGSAQEMNTEKLIELAPKLVIGFGLNGNNKVYNTASKNGILTVYN 176
Query: 195 AEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRK 254
+++E + LGRAEWIKF+G LFG ++ ADS+FK +E+ YL +K A T +VL
Sbjct: 177 GDWLEETPLGRAEWIKFFGVLFGKEKEADSIFKSIETRYLKVKELAAQITNTPTVLSGNL 236
Query: 255 TGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGG 314
VWYMP GES + +KDAN Y + SGS+ L E+VLDKA A +WI G
Sbjct: 237 FKDVWYMPAGESFIANYFKDANTDYLWNHTTGSGSMPLSIESVLDKAQDATYWIGC--GL 294
Query: 315 F-NKQQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFH 368
F NK+ +L Y A FK IY +K YFE+ RPD +L D+I++
Sbjct: 295 FENKKDMLKTNSYYKAFNAFKKSNIYTYATNKGETGGLVYFEKSPTRPDLVLKDIIKITQ 354
Query: 369 PDL 371
P L
Sbjct: 355 PQL 357
>gi|68552680|ref|ZP_00592067.1| Periplasmic binding protein [Prosthecochloris aestuarii DSM 271]
gi|68240480|gb|EAN22754.1| Periplasmic binding protein [Prosthecochloris aestuarii DSM 271]
Length = 414
Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats.
Identities = 96/318 (30%), Positives = 160/318 (50%), Gaps = 15/318 (4%)
Query: 77 LHTYYLVEDASKA-EKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYML 135
L +Y L+E E D +V+ P++R F+T H +++L + I GVA +++
Sbjct: 95 LLSYLLLEPGQPVPEGYDDHIVVRTPVERVAVFSTTHIGFIDLLECTDRIIGVARPEFVN 154
Query: 136 IPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLS--PFENSGGYGKLDEIKIPIIE 193
P VQ+R+Q I + G P++E I+++ PD ++ + P Y + + IP++
Sbjct: 155 TPSVQERIQDGQITEIGMPFSPNLEIILELDPDLIIATALPPARRTEYNAIIDAGIPVVV 214
Query: 194 CAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDR 253
+E++E+S LGRAEW+K Y LFG +Q A F+ + Y L+A + SV+
Sbjct: 215 VSEWLESSPLGRAEWVKLYAALFGKEQLAQEKFRQISDAYHGLRALTRDVADRPSVISSL 274
Query: 254 KTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYG 313
W++PGG+S V L +DA Y ++D +GS+ + E V A ADFW+ +
Sbjct: 275 PRKDAWFVPGGDSYVAALLRDAGASYHWSDLKTTGSIKMDIEPVYQVALDADFWL-NPGT 333
Query: 314 GFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFH 368
N +LL+ + + G +Y P Y+E +P+ +L DLI + H
Sbjct: 334 VLNLDELLSNDLRFRDFSSVQHGRVYNNNRLLNPAGGNAYWEFGVVQPERILKDLIMILH 393
Query: 369 PDL--RSG----SMRYYH 380
PD+ R G S+ +YH
Sbjct: 394 PDIAEREGFQDDSLTFYH 411
>gi|76260846|ref|ZP_00768474.1| Periplasmic binding protein [Chloroflexus aurantiacus J-10-fl]
gi|76164279|gb|EAO58431.1| Periplasmic binding protein [Chloroflexus aurantiacus J-10-fl]
Length = 435
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 94/319 (29%), Positives = 160/319 (50%), Gaps = 17/319 (5%)
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLV-QVPMKRGVFFTTAHANLMEMLGAQN 123
+T+ NPW+ T Y LV+ + +D L+ ++P++R + +T ++ LG +
Sbjct: 108 ITVLNPWRNADTQFQYILVQCGTPPPPASDNALIIEIPVQRVIAMSTTQLPHLDGLGVLD 167
Query: 124 AIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENS--GGY 181
+ GV Y+ V+K++ + + G G + ++E+ +D++PD ++ N +
Sbjct: 168 KLIGVDSFLYINNEAVRKKIDAGELVEIGSGGQVNVEQALDLEPDLIMTYGVGNPEYDAH 227
Query: 182 GKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAK 241
KL E + ++ +EYME S LGRAEWIKF F + A+ L+ + Y + AKA+
Sbjct: 228 PKLLEAGLNVVLNSEYMEGSPLGRAEWIKFTAAFFNQEAKANELYTAIAQRYRDIAAKAR 287
Query: 242 SSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKA 301
+ + +V + WYMPGG+S V L DA Y +AD+ SGS L FE V ++A
Sbjct: 288 AVAEKPTVFANAPFRGTWYMPGGKSYVAQLLADAGANYLWADDTSSGSQQLSFEEVFERA 347
Query: 302 GQADFWIFSYYGGFNKQQLLAEYQG----YTALKPFKTGEIYG-----CQVDKTPYFEEV 352
A FW+ + L+E Q +T F+ G ++ + Y+E
Sbjct: 348 QNASFWLNP-----GSAKSLSELQQMDERFTQFAAFQNGAVFNNNKRLNENGGNDYWETG 402
Query: 353 SWRPDWLLSDLIQLFHPDL 371
P +L+DLI++FHP+L
Sbjct: 403 VTNPHLILADLIKIFHPEL 421
>gi|156742220|ref|YP_001432349.1| periplasmic binding protein [Roseiflexus castenholzii DSM 13941]
gi|156233548|gb|ABU58331.1| periplasmic binding protein [Roseiflexus castenholzii DSM 13941]
Length = 434
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 101/329 (30%), Positives = 164/329 (49%), Gaps = 17/329 (5%)
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEKPTD---GTLVQVPMKRGVFFTTAHANLMEMLGA 121
+T+ NPW+ Y LV+ + PTD ++ VP+KR V +T H ++ LG
Sbjct: 107 ITVLNPWRDADVQFRYVLVQCGTPP--PTDVGDALVIDVPVKRIVAMSTTHLPHLDELGV 164
Query: 122 QNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENS--G 179
+ + GV Y+ V+K++ + + G G + ++E+ ID++PD ++ N
Sbjct: 165 LDRLVGVDSFLYINNFAVRKKIDAGELVEIGGGGQVNVEQAIDLQPDLIMTYGVGNPEYD 224
Query: 180 GYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAK 239
+ KL E + ++ +EYMETS LGRAEWIKF F + A ++ + S Y + AK
Sbjct: 225 AHPKLLEAGLKVVLNSEYMETSPLGRAEWIKFTAAFFNREARATEVYDRISSRYKEMAAK 284
Query: 240 AKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLD 299
A++ +V W++ GG+S L DA Y +AD+ +GSL L FE V +
Sbjct: 285 ARNVTNKPTVFTGAPFQGTWFVSGGQSYAAQLLADAGAMYLWADDTSTGSLPLSFEEVFE 344
Query: 300 KAGQADFWIFSYYGGFNKQQL--LAEYQGYTALKPFKTGEIYG-----CQVDKTPYFEEV 352
+A ADFW+ G K AE + +T F+ G ++ + YFE
Sbjct: 345 RARDADFWLNP---GMWKSLADGKAEDERFTQFAAFQKGNVFNNNKRLNENGGNDYFESG 401
Query: 353 SWRPDWLLSDLIQLFHPDLRSGSMRYYHR 381
PD +L+DLI++FHP+L Y+++
Sbjct: 402 LTNPDVVLADLIKIFHPELLPDHELYFYQ 430
>gi|86132363|ref|ZP_01050958.1| putative iron-related ABC transport periplasmic binding protein
[Cellulophaga sp. MED134]
gi|85817282|gb|EAQ38465.1| putative iron-related ABC transport periplasmic binding protein
[Dokdonia donghaensis MED134]
Length = 363
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 92/293 (31%), Positives = 149/293 (50%), Gaps = 9/293 (3%)
Query: 97 LVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMK 156
+++ P+K V +T H +EMLG + G + Y+ P +KR++ I + G
Sbjct: 71 IIKTPIKNVVVTSTTHIPSLEMLGVIETLKGFPNLDYVSSPLSRKRIENDLITELGQNES 130
Query: 157 PDIEKIIDIKPDGLLLSPFENSG-GYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFL 215
+ E I++ PD ++ E L IP++ +++E LG+AEWIKF+G L
Sbjct: 131 LNTELAINLNPDAVITFGVEGENKSVNTLQRAGIPVLYNGDWVEKEPLGKAEWIKFFGAL 190
Query: 216 FGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDA 275
+ ++ ADS+F +++ YLA K + S + ++L VWY+P G+S + +DA
Sbjct: 191 YSKEKEADSIFTTIKNQYLATKKQLASVTSSPTILSGAMYKDVWYLPKGDSWQAKVLEDA 250
Query: 276 NGKYAFADNNKSGSLALPFETVLDKAGQADFWIF-SYYGGFNKQQLLAEYQGYTALKPFK 334
G Y +AD GS+AL E+VL+K QADFWI Y ++K LL++ Y FK
Sbjct: 251 GGSYLWADTEGVGSIALSIESVLEKGQQADFWIAPGQYTSYSK--LLSDNPAYGQFDAFK 308
Query: 335 TGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDLRSGSMRYYHRL 382
++Y K Y+E RPD +L DL ++ HP L + ++ L
Sbjct: 309 NKKVYTFAKSKGATGGLLYYELAPNRPDLVLRDLTKILHPALITEEFTFFAPL 361
>gi|67917543|ref|ZP_00511149.1| Periplasmic binding protein [Chlorobium limicola DSM 245]
gi|67784846|gb|EAM44219.1| Periplasmic binding protein [Chlorobium limicola DSM 245]
Length = 412
Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 11/342 (3%)
Query: 39 NAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTL- 97
+AP + +YA+ ++ + I + + K Y L+ + K G +
Sbjct: 55 SAPHAGSGFIRYAKGFSLQHHAGFITLHIDPAPDGRKDTLRYILLPSGASVPKGFHGYVP 114
Query: 98 VQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKP 157
V+ P+KR F+T H ++MLG + I GV+ +++ P V+ R+++ I G P
Sbjct: 115 VRTPVKRIAVFSTTHIGFIDMLGRSDGIIGVSRPEFVNTPAVRSRIRSGAIKAIGMPFSP 174
Query: 158 DIEKIIDIKPDGLLLS--PFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFL 215
D+E ++++ PD ++ P Y L + IP++ AE++E S LGRAEWI+ +G L
Sbjct: 175 DVEVLLNLDPDLVIAPALPAARKTDYQALVQAGIPVLVVAEWLEPSPLGRAEWIRLFGAL 234
Query: 216 FGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDA 275
FG + +A F +E +Y L A ++ ++ +VL W++P G S V L DA
Sbjct: 235 FGREDAAREKFDAIERSYRKLAALTENVRERPAVLTGLPVKDTWFVPAGGSYVAALLHDA 294
Query: 276 NGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNK-QQLLAEYQGYTALKPFK 334
Y ++D +GS++L E V A +A W+ G +LLA + + K
Sbjct: 295 GAAYPWSDRPGTGSISLDIEAVYPVALEAPCWLNP--GAVESMDELLAMDVRFQDMLSVK 352
Query: 335 TGEIYGCQ-----VDKTPYFEEVSWRPDWLLSDLIQLFHPDL 371
TG +Y Y+E RPD +L DLI + HP L
Sbjct: 353 TGRVYNNNRWINAAGGNAYWEYGVLRPDLILRDLISILHPGL 394
>gi|126661896|ref|ZP_01732895.1| periplasmic-binding protein of ABC transporter [Flavobacteria
bacterium BAL38]
gi|126625275|gb|EAZ95964.1| periplasmic-binding protein of ABC transporter [Flavobacteria
bacterium BAL38]
Length = 376
Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats.
Identities = 108/369 (29%), Positives = 174/369 (47%), Gaps = 24/369 (6%)
Query: 18 YLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTL 77
Y L L G K ++ N T + ++AE +E+ V +SN + + K
Sbjct: 4 YFFLAVLFLGFIQCKKSESSENINTSAQNSIQHAEGFSIEKHEGFSVVKVSNAFPEAKDN 63
Query: 78 HTYYLVEDASK-AEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLI 136
+TY L + + + T ++VP+K+ + +T H +E LG + + G Y+
Sbjct: 64 YTYILHKKGVQIPDSLQQFTAIEVPIKKIIVTSTTHVPALESLGVEGTLIGFPTTNYISS 123
Query: 137 PDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGG---YGKLDEIKIPIIE 193
+ + + D G + E I+DI+PD ++ F G Y L++ I+
Sbjct: 124 EKTRALIDAGKVRDLGSNQGLNTEVILDIQPD--VIVGFSIDGDLKTYKNLEKNGQKIVF 181
Query: 194 CAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNY-LALKAKAKSSKQTLSVLPD 252
++ E + LG+AEWIKF+G L+ + A +F +E Y LAL K+ KQ P
Sbjct: 182 NGDWTEKTPLGKAEWIKFFGALYDLDEKATEIFNSIEKEYNLALNLAKKTKKQ-----PT 236
Query: 253 RKTGSV----WYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWI 308
G++ W++P G+S K+ NG Y + D+ +GSLAL FE+VLDKA ADFWI
Sbjct: 237 IFAGAIYEDQWFLPQGDSWAAYFLKEGNGNYLWKDSKGTGSLALSFESVLDKAKDADFWI 296
Query: 309 FSYYGGFNK-QQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSD 362
G F Q++L Y K + IY K Y+E RPD +L D
Sbjct: 297 GP--GQFTSIQEILNNNPNYIHFKAVASKNIYSFSTKKGKTGGVIYYELAQNRPDLVLKD 354
Query: 363 LIQLFHPDL 371
++++ HP++
Sbjct: 355 IMKILHPEV 363
>gi|88601589|ref|YP_501767.1| periplasmic binding protein [Methanospirillum hungatei JF-1]
gi|88187051|gb|ABD40048.1| periplasmic binding protein [Methanospirillum hungatei JF-1]
Length = 394
Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats.
Identities = 103/348 (29%), Positives = 172/348 (49%), Gaps = 17/348 (4%)
Query: 49 KYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGT-LVQVPMKRGVF 107
+YA +E VT++ PW+ +TY LV+ G ++ +P +R V
Sbjct: 46 EYATGFSVEYHEGYKVVTVTKPWRGSDESYTYVLVKPGVSPPHLGKGEEIITIPSERFVS 105
Query: 108 FTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADC---GDGMKP--DIEKI 162
++ + + +LG +++ GV + + P+V +Q + D G GM ++E +
Sbjct: 106 LSSTYLPYLPILGITSSLKGVTNTNTVYTPEVMNLIQEGKVIDVSGGGSGMATGINLETL 165
Query: 163 IDIKPDGLLLSPFENSGGYG---KLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCK 219
ID+ PD L+++ Y KL E IP++ AEYME LGRAEWIKF F +
Sbjct: 166 IDLNPD-LVMTYATGQPEYDAHPKLQEAGIPVVLNAEYMEEDPLGRAEWIKFISVFFNRE 224
Query: 220 QSADSLFKVVESNYLALKAKAKSSKQT-LSVLPDRKTGSVWYMPGGESSVGLLYKDANGK 278
+ A++ F+ +++ Y +L+ T +V + W M GG+S V L +DA
Sbjct: 225 KEANAYFEKIKNEYQSLEKSVHFLNGTNPTVFVNNNWQGTWNMAGGQSYVAELLRDAGAD 284
Query: 279 YAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLAEYQGYTALKPFKTGEI 338
Y ++D+ +GS+ L FE V DK AD+W+ + Q+LL E Y+ K+ +I
Sbjct: 285 YLWSDDTTTGSIPLDFEIVYDKGQNADYWL-NPGTAMTLQELLGEDARYSEFTAVKSKKI 343
Query: 339 Y--GCQVDK---TPYFEEVSWRPDWLLSDLIQLFHPDLRSGSMRYYHR 381
Y +V+ Y+E P+ +L DLI++FHP++ S Y+R
Sbjct: 344 YNNNARVNAGGGNDYWESGVAHPETVLKDLIKIFHPEIVSDHNLVYYR 391
>gi|126646694|ref|ZP_01719204.1| periplasmic-binding protein of ABC transporter [Algoriphagus sp.
PR1]
gi|126576742|gb|EAZ80990.1| periplasmic-binding protein of ABC transporter [Algoriphagus sp.
PR1]
Length = 381
Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats.
Identities = 110/349 (31%), Positives = 168/349 (48%), Gaps = 23/349 (6%)
Query: 48 FKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDG--TLVQVPMKRG 105
KYA+ ++ + + ++ +S PW + Y ++E EKPT +Q+P+ +
Sbjct: 36 LKYAKGFQLFKGNGFWEIEVSQPWTGAEKSFRYLILEKGE--EKPTGDFDAEIQLPVSKI 93
Query: 106 VFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDI 165
V +T H ++ML + + + G D + + + + D G G + E ID
Sbjct: 94 VVTSTTHIPHLDMLNSSDKLIGFPDTDLISSKKTRALVDAGKVMDLGSGPSANPEMTIDT 153
Query: 166 KPDGLLLSPFENSGGYGKLDEIKI----PIIECAEYMETSALGRAEWIKFYGFLFGCKQS 221
+ +++S + Y LD +K P+I EY+E LGRAEWIKF G L G +
Sbjct: 154 DAEWVMISTLGDDIRY--LDLLKNAGVNPVIN-GEYVEQHPLGRAEWIKFTGVLLGNFEK 210
Query: 222 ADSLFKVVESNYLA---LKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGK 278
A +F+ VE++Y L K+ SVL +WY PG +S + ++A G
Sbjct: 211 ASEIFEEVENDYFEAVNLTENIPDDKRP-SVLSGVMYQDIWYAPGADSWGAKILQNAGGN 269
Query: 279 YAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLAEYQG-YTALKPFKTGE 337
Y F D SGSL L +E VLD+A ++ WI S F + + E + Y A K FK G
Sbjct: 270 YIFNDQKGSGSLQLNYEFVLDRAIDSEVWIGS--SDFPSIKQMGEMEPRYIAFKAFKNGN 327
Query: 338 IYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDLRSGSMRYYHR 381
IY K P YFE RPD +L DLI++ HPDL G Y+++
Sbjct: 328 IYSYTQKKGPTGGLEYFELGYMRPDLILKDLIKILHPDLIPGYELYFYQ 376
>gi|68231768|ref|ZP_00570930.1| Periplasmic binding protein [Frankia sp. EAN1pec]
gi|68200637|gb|EAN14847.1| Periplasmic binding protein [Frankia sp. EAN1pec]
Length = 398
Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats.
Identities = 103/344 (29%), Positives = 166/344 (48%), Gaps = 17/344 (4%)
Query: 41 PTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKP----TDGT 96
P STL +YA N + +T+ P+ GK +Y L + +P
Sbjct: 52 PVHSTL--EYARNFTVRYEKAYQVLTVKEPYPDGKP-ESYVLYRCGTPEPEPGGDLAGAP 108
Query: 97 LVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMK 156
++VP++ +T H L+ L + + GVA ++ D++ RL +A+ G +
Sbjct: 109 RIEVPIETLYSGSTTHLPLLVDLDREGVLTGVASGTAVVNKDIRARLDADEVAEYAPGGQ 168
Query: 157 PDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLF 216
D E+++ PD ++ E S Y L + IP++ AE++E+ LGRAEW+KF L
Sbjct: 169 IDTERVVAAAPDVVMTGGTE-SAEYQALRDAGIPVVANAEWLESDPLGRAEWVKFMAALT 227
Query: 217 GCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDAN 276
G + A +F +E++Y A+ AK ++ T +++ G VWYMP G S VG L DA
Sbjct: 228 GDEAKAAKVFDQIEADYKAIAAKVPGTEPTAALIGTMYQG-VWYMPSGGSYVGKLLADAG 286
Query: 277 GKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNK-QQLLAEYQGYTALKPFKT 335
Y +AD +GSL L FE V ++G A W+ G + + A+ Y L +
Sbjct: 287 ASYPWADETDTGSLELDFEKVFTESGGAPIWLAD--GEWKTLADVTADDSRYGELAAVRD 344
Query: 336 GEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDLRSG 374
G+++ + P Y+E RPD +L DL+ + HPD G
Sbjct: 345 GQVWTNTLTMGPGGGNDYWERGVTRPDLVLGDLVAILHPDALPG 388
>gi|21673249|ref|NP_661314.1| iron(III) ABC transporter, periplasmic iron-binding protein
[Chlorobium tepidum TLS]
gi|21646335|gb|AAM71656.1| iron(III) ABC transporter, periplasmic iron-binding protein
[Chlorobium tepidum TLS]
Length = 403
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 85/284 (29%), Positives = 147/284 (51%), Gaps = 10/284 (3%)
Query: 96 TLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGM 155
T+++ P+KR F+T H ++MLG + I GV+ +++ P V+ R+++ I G
Sbjct: 104 TVIRTPVKRIAVFSTTHIGFLDMLGRSDGIIGVSRPEFVNTPAVRSRIRSGAIKAIGMPF 163
Query: 156 KPDIEKIIDIKPDGLLLS--PFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYG 213
PD+E +++++PD ++ P Y L + IP++ AE++E S LGRAEWIK +G
Sbjct: 164 SPDVEALLNLEPDLVIAPALPAARKTDYQALVQAGIPVLVVAEWLEPSPLGRAEWIKLFG 223
Query: 214 FLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYK 273
L G ++ A F +ES+YL + A +++ +VL WY+P G S V + +
Sbjct: 224 ALVGKEKLARERFAAIESSYLKIAALSRNLPNRPTVLTGLPVKDAWYVPTGGSYVAAMLR 283
Query: 274 DANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNK-QQLLAEYQGYTALKP 332
DA Y + D +GS+ L E V A +A++W+ + G + +LLA + ++
Sbjct: 284 DAGASYHWRDLPGTGSVPLTIEAVWPVALEAEYWLNT--GTVSTLDELLAVDSRFGQMRS 341
Query: 333 FKTGEIYGCQ-----VDKTPYFEEVSWRPDWLLSDLIQLFHPDL 371
+ ++ Y+E RPD +L DL+ + HP L
Sbjct: 342 VRERRVWNNNRLVNAAGGNAYWESGVVRPDLILKDLVMILHPGL 385
>gi|156107103|gb|EDO08848.1| hypothetical protein BACOVA_04704 [Bacteroides ovatus ATCC 8483]
Length = 379
Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats.
Identities = 100/365 (27%), Positives = 170/365 (46%), Gaps = 14/365 (3%)
Query: 27 GCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHT-YYLVED 85
GC + +++A+ N T T + NIK + + VT++NPW+ ++ T ++ D
Sbjct: 19 GCHDKSSKLADFNR-TAYTPEYASGFNIKGADSRKSVLVTVTNPWQGADSITTCLFIARD 77
Query: 86 ASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQT 145
A + G ++ R V ++ H +++ +G + GV+ Y+ PD+Q R
Sbjct: 78 GEAAPEDFTGQVLNGNAGRIVCMSSTHIAMLDAIGETGRVVGVSGIDYISNPDIQAR--R 135
Query: 146 KTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGY-GKLDEIKIPIIECAEYMETSALG 204
++ D G + E ++ + PD +LL + GKL E+ IP + +Y+E S LG
Sbjct: 136 DSVGDVGYEGNINYELLLSLDPDLVLLYGVNGASSMEGKLKELNIPFMYVGDYLEESPLG 195
Query: 205 RAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSK-QTLSVLPDRKTGSVWYMPG 263
+AEW+ + G + + +F + Y ALK + + SV+ + G W+MP
Sbjct: 196 KAEWLVALAEVAGKRTEGEKVFAEIPVRYNALKKRVTDAAIDAPSVMLNTPYGDNWFMPS 255
Query: 264 GESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNK-QQLLA 322
ES V L KDA G Y + N + S + E A Q D W+ + G N +L A
Sbjct: 256 TESYVARLIKDAGGDYIYKKNTGNASAPIDLEEAYLLASQVDMWL--HVGMANTLDELRA 313
Query: 323 EYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDLRSGSMR 377
+T + F+ G +Y Y+E PD +L DL+++FHP+L +
Sbjct: 314 ACPKFTDTRCFRNGYVYNNNARTNAAGGNDYYESAVVNPDLVLRDLVKIFHPELVAEDFV 373
Query: 378 YYHRL 382
YY +L
Sbjct: 374 YYKQL 378
>gi|29347362|ref|NP_810865.1| Fe3+ ABC transporter, periplasmic iron-binding protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|29339262|gb|AAO77059.1| Fe3+ ABC transporter, periplasmic iron-binding protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|156860182|gb|EDO53613.1| hypothetical protein BACUNI_02892 [Bacteroides uniformis ATCC 8492]
Length = 379
Score = 147 bits (372), Expect = 8e-34, Method: Composition-based stats.
Identities = 105/371 (28%), Positives = 176/371 (47%), Gaps = 26/371 (7%)
Query: 27 GCSNNKAQMANTN----APTDSTLVFKYAE--NIKMERTSDGIKVTLSNPWKKGKTLHTY 80
GC N +++ + N AP +YA +IK + + +T+ NPW+ ++ T+
Sbjct: 19 GCHNKSSKINDFNLLLYAP-------EYASGFDIKGAGGKESVLITVRNPWQGADSVTTW 71
Query: 81 -YLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDV 139
++V + + + G +++ KR V ++ H +++ +G I GV+ Y+ PD+
Sbjct: 72 LFIVRNGEEVPEGFAGQVLKGDAKRIVAMSSTHIAMLDAIGEVRCITGVSGIDYISNPDI 131
Query: 140 QKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGY-GKLDEIKIPIIECAEYM 198
Q R +I D G + E ++ + PD +LL + KL+E+ IP + +Y+
Sbjct: 132 QAR--RDSIGDVGYEGNINYELLLSLDPDLVLLYGVNGASAMESKLEELDIPFMYVGDYL 189
Query: 199 ETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAK-AKSSKQTLSVLPDRKTGS 257
E S LG+AEW+ + G ++ + F + Y ALK K A S+ T SV+ + G
Sbjct: 190 EESPLGKAEWMVVLSEVTGKREKGEKAFAAIPVRYNALKKKVADSTLGTPSVMLNVPYGD 249
Query: 258 VWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNK 317
W+MP +S V L DA G+Y + N + S+ + E A AD W+ G N
Sbjct: 250 SWFMPSTQSYVARLITDAGGRYIYQKNTGNASIPIDLEEAYLLASDADMWL--NVGMANS 307
Query: 318 -QQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDL 371
L A +T + FK GE+Y Y+E PD +L DL+++FHP+L
Sbjct: 308 LDDLKASCPKFTDTRCFKNGEVYNNNARTNTAGGNDYYESAVVNPDIVLRDLVKIFHPEL 367
Query: 372 RSGSMRYYHRL 382
YY +L
Sbjct: 368 VQEECVYYKQL 378
>gi|53714316|ref|YP_100308.1| iron(III) ABC transporter periplasmic iron-binding protein
[Bacteroides fragilis YCH46]
gi|52217181|dbj|BAD49774.1| iron(III) ABC transporter periplasmic iron-binding protein
[Bacteroides fragilis YCH46]
Length = 379
Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats.
Identities = 105/371 (28%), Positives = 176/371 (47%), Gaps = 26/371 (7%)
Query: 27 GCSNNKAQMANTN----APTDSTLVFKYAE--NIKMERTSDGIKVTLSNPWKKGKTLHTY 80
GC N +++ + N AP +YA +IK + + +T+ NPW+ ++ T+
Sbjct: 19 GCHNKSSKINDFNLLLYAP-------EYASGFDIKGAGGKESVLITVRNPWQGADSVTTW 71
Query: 81 -YLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDV 139
++V + + + G +++ KR V ++ H +++ +G I GV+ Y+ PD+
Sbjct: 72 LFIVRNGEEVPEGFAGQVLKGDAKRIVAMSSTHIAMLDAIGEVRCITGVSGIDYISNPDI 131
Query: 140 QKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGY-GKLDEIKIPIIECAEYM 198
Q R +I D G + E ++ + PD +LL + KL+E+ IP + +Y+
Sbjct: 132 QAR--RDSIGDVGYEGNINYELLLSLDPDLVLLYGVNGASAMESKLEELDIPFMYVGDYL 189
Query: 199 ETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAK-AKSSKQTLSVLPDRKTGS 257
E S LG+AEW+ + G ++ + F + Y ALK K A S+ T SV+ + G
Sbjct: 190 EESPLGKAEWMVVLSEVTGKREKGEKAFAAIPVKYNALKKKVADSTLGTPSVMLNVPYGD 249
Query: 258 VWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNK 317
W+MP +S V L DA G+Y + N + S+ + E A AD W+ G N
Sbjct: 250 SWFMPSTQSYVARLITDAGGRYIYQKNTGNASIPIDLEEAYLLASDADMWL--NVGMANS 307
Query: 318 -QQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDL 371
L A +T + FK GE+Y Y+E PD +L DL+++FHP+L
Sbjct: 308 LDDLKASCPKFTDTRCFKNGEVYNNNARTNTAGGNDYYESAVVNPDIVLRDLVKIFHPEL 367
Query: 372 RSGSMRYYHRL 382
YY +L
Sbjct: 368 VQEECVYYKQL 378
>gi|83857625|ref|ZP_00951153.1| periplasmic-binding protein of ABC transporter [Croceibacter
atlanticus HTCC2559]
gi|83848992|gb|EAP86861.1| periplasmic-binding protein of ABC transporter [Croceibacter
atlanticus HTCC2559]
Length = 378
Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats.
Identities = 100/353 (28%), Positives = 174/353 (49%), Gaps = 13/353 (3%)
Query: 28 CSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKV-TLSNPWKKGKTLHTYYLV-ED 85
C N+ ++ + + D TL +YA+ ++ + DG K+ T+ +PW + Y LV ED
Sbjct: 17 CKNHDKELKSLLSKGD-TLKIEYAKGFEVV-SYDGFKLMTVKSPWPDAEKDFIYALVNED 74
Query: 86 ASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQT 145
+ E V +P+++ V +T H +E LG ++A+ G + Y+ ++ +
Sbjct: 75 NTLPEGLEYDQKVNLPIEQLVVTSTTHIPSLEALGEEHALVGFPNLDYISSKKTRQLINN 134
Query: 146 KTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGG-YGKLDEIKIPIIECAEYMETSALG 204
+ + G + E +++++PD ++ +N + + + P+I A+++ET LG
Sbjct: 135 NKVKELGANESINTEILLELQPDVVIGFAIDNENKTFNTIQKNGTPVIFNADWLETHPLG 194
Query: 205 RAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGG 264
+AEW+KF+G LF A LF + ++Y K AKS + +VL VWY+P G
Sbjct: 195 KAEWLKFFGVLFNKTDKATQLFNEIATSYEETKKLAKSVNEKPTVLCGAMYKDVWYLPYG 254
Query: 265 ESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLAEY 324
S DAN KY + N GS++L FE VLDKA +++W+ G F+ + E
Sbjct: 255 NSWQAKFISDANAKYVYGYTNGKGSISLAFEKVLDKAENSEYWLAP--GSFSSYDAMLEA 312
Query: 325 QG-YTALKPFKTGEIYGC-----QVDKTPYFEEVSWRPDWLLSDLIQLFHPDL 371
Y K F+ I+ + Y+E RPD +L D++ + HP+L
Sbjct: 313 SSHYNQFKAFQDKTIFSFASTTGETGGVLYYELGPNRPDLVLKDMVSILHPEL 365
>gi|150025519|ref|YP_001296345.1| Probable ABC-type iron(III)-transport system, binding protein
precursor component [Flavobacterium psychrophilum
JIP02/86]
gi|149772060|emb|CAL43536.1| Probable ABC-type iron(III)-transport system, binding protein
precursor component [Flavobacterium psychrophilum
JIP02/86]
Length = 380
Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats.
Identities = 101/366 (27%), Positives = 173/366 (47%), Gaps = 13/366 (3%)
Query: 15 LILYLLLLNLCF-GCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKK 73
L LY +L L GC N + T T + + +Y++++ + + + +SNPW
Sbjct: 6 LKLYCFILFLAVVGCKKN--ETTRTETSTIAGNLIRYSKSLVLIKHEGYTVIKVSNPWPD 63
Query: 74 GKTLHTYYLVEDASKAEKPTDGTL-VQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAK 132
TY L E + + VP++ V +T + +EMLG + ++ G
Sbjct: 64 AHKSFTYILKEKNGVVPDSLQKYITIGVPLQSIVVTSTTNVPFLEMLGVEKSLVGFPHTD 123
Query: 133 YMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGY-GKLDEIKIPI 191
Y+ +K + + + G K ++E++I++ P+ ++ +N+ L + + +
Sbjct: 124 YVSSEKTRKLIDAGFVKNVGQNEKLNVEQLIELAPNLIVAFGVDNTNPMIDNLQKSGLKV 183
Query: 192 IECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLP 251
+ A++ME S LG+AEWIK +G LFG ++ A +LF + NY S K +VL
Sbjct: 184 LIEADWMEQSPLGKAEWIKLFGALFGKEKEAKTLFDNIVKNYNNALTLVASKKAKSTVLY 243
Query: 252 DRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSY 311
WY+ G S V KDA Y +A+ +GS++L FE +L+KA A +WI +
Sbjct: 244 GSMYQDQWYVARGNSWVAQFMKDAKANYLWANVAGTGSMSLSFEKILEKAKTAQYWIPT- 302
Query: 312 YGGFNKQQLLAEYQ-GYTALKPFKTGEIYGCQ-----VDKTPYFEEVSWRPDWLLSDLIQ 365
G + LA Y+ K+ IY + T ++E RPD +L D I+
Sbjct: 303 -GAYKNIAALANTNPHYSQFDALKSKNIYSFESKLGATGGTIFYELSPSRPDLVLKDYIK 361
Query: 366 LFHPDL 371
+FHP+L
Sbjct: 362 IFHPEL 367
>gi|91216389|ref|ZP_01253356.1| periplasmic-binding protein of ABC transporter [Psychroflexus
torquis ATCC 700755]
gi|91185527|gb|EAS71903.1| periplasmic-binding protein of ABC transporter [Psychroflexus
torquis ATCC 700755]
Length = 378
Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats.
Identities = 98/355 (27%), Positives = 165/355 (46%), Gaps = 18/355 (5%)
Query: 28 CSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDAS 87
C +N + + + T+ + YAE + D KV + +PW++ + Y L
Sbjct: 16 CVDNTKKEEDLGSFTEVEIT--YAEGFSIYHYKDFTKVIVHSPWQEAEKGLVYIL--KNK 71
Query: 88 KAEKPTD---GTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQ 144
+ E P ++ +P+++ V +T H + L + G + Y+ ++ +
Sbjct: 72 EIELPNSLVYDAIIDLPIEKLVTTSTTHIPSLIALNKLEKLVGFPNLDYISSKAAREFID 131
Query: 145 TKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSG-GYGKLDEIKIPIIECAEYMETSAL 203
I + G + E ++++ PD + E KL E IP++ +++E SAL
Sbjct: 132 EGKIKELGKNEAINTEIVLELNPDVIFSFALEGQNKALSKLQESGIPVVYNGDWLEKSAL 191
Query: 204 GRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPG 263
G+AEWIKF+G G + F+ VE +Y +LK AK+S + +V+ WY+P
Sbjct: 192 GKAEWIKFFGVFLGELDQSIKAFEDVEQSYHSLKVLAKTSSKKPTVISGAMHQDRWYLPY 251
Query: 264 GESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLAE 323
G S ++DA+ Y ++ GS A FETVL A QA+FWI G + + L E
Sbjct: 252 GTSWQAQFFEDAHADYIYSHTQGKGSAAFAFETVLQDAKQAEFWISP--GQYTTYEQLTE 309
Query: 324 ----YQGYTALKP---FKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDL 371
YQ + A + F G + ++E RPD +L DL+++FHPDL
Sbjct: 310 SNTHYQEFDAFQEKNIFTMARTTG-ETGGVLFYELGPNRPDLILKDLVKIFHPDL 363
>gi|156109621|gb|EDO11366.1| hypothetical protein BACOVA_03270 [Bacteroides ovatus ATCC 8483]
Length = 396
Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats.
Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 18/379 (4%)
Query: 14 SLILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIK--VTLSNPW 71
S++ +L LL L SN K + A +YA K+ + + +SNPW
Sbjct: 25 SILTWLCLLFLASCISNKKTSL---EAFKQDVYTPEYATGFKILGADNAASTLIQVSNPW 81
Query: 72 KKGKTLH-TYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVAD 130
+ K + +Y++ + +A +G + KR V +++ + + LG + I GV+
Sbjct: 82 QGAKDVKMSYFISRNGEQAPAGFNGPTIPAGAKRIVCMASSYIAMFDALGQVDKIVGVSG 141
Query: 131 AKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFEN--SGGYGKLDEIK 188
Y+ P + +I D G M + E ++ +KPD +LL + + KL E+
Sbjct: 142 IDYVSNPYILA--HKDSIKDMGPEM--NYELLLGLKPDVVLLYGIGDAQTAVTDKLKELY 197
Query: 189 IPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLS 248
IP + EY+E S LG+AEW+ L ++ +F+ + Y LKA +S +Q +
Sbjct: 198 IPYMYVGEYLEESPLGKAEWLVALAELTDSREKGIEIFREIPKRYQVLKALTESVEQRPT 257
Query: 249 VLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWI 308
V+ + W MP +S + L DA Y + +N + S + ET +AD+WI
Sbjct: 258 VMLNTPWNDSWVMPSTQSYMAQLVTDAGADYIYKENTSNSSTPIGLETAYKLIQKADYWI 317
Query: 309 FSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDL 363
+ +L + K + +Y + TP Y+E RPD +L DL
Sbjct: 318 -NVGMASTLDELKTVNPKFVDAKAVREKTVYNNNLRTTPTGGNDYWESAVVRPDVVLRDL 376
Query: 364 IQLFHPDLRSGSMRYYHRL 382
I +FHP+L S S+ YY L
Sbjct: 377 IHIFHPELVSDSLYYYRHL 395
>gi|153808822|ref|ZP_01961490.1| hypothetical protein BACCAC_03122 [Bacteroides caccae ATCC 43185]
gi|149128648|gb|EDM19866.1| hypothetical protein BACCAC_03122 [Bacteroides caccae ATCC 43185]
Length = 308
Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats.
Identities = 89/311 (28%), Positives = 149/311 (47%), Gaps = 12/311 (3%)
Query: 79 TYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPD 138
+Y++ + +A +G ++ K+ V ++++ +++ LG N I GV+ Y+ P
Sbjct: 2 SYFVTRNGEQAPAGFNGPVIPAGAKQIVCMSSSYVAMLDELGEVNRIVGVSGIDYIANPY 61
Query: 139 VQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFEN--SGGYGKLDEIKIPIIECAE 196
+ +I D G M + E +I +KPD +LL + + KL E+ IP + E
Sbjct: 62 ILA--HKDSIKDMGPEM--NYELLIGLKPDVVLLYGIGDAQTAVTDKLKELSIPYLYMGE 117
Query: 197 YMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTG 256
Y+E S LG+AEW+ L ++ +F+ + Y ALKA S Q +V+ +
Sbjct: 118 YLEESPLGKAEWMIVLSELTDKREKGIEIFREIPQRYYALKALTDSVSQRPTVMFNTPWN 177
Query: 257 SVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFN 316
W MP +S + L DA +Y + +N+ + S + ET +AD+WI +
Sbjct: 178 DSWVMPSTQSYMARLIADAGAEYIYKENSSNSSTPIGLETAYGLIQKADYWI-NVGSATT 236
Query: 317 KQQLLAEYQGYTALKPFKTGEIYGCQVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDL 371
++L A + K +Y + TP Y+E RPD +L DLI +FHP+L
Sbjct: 237 LEELKAVNPKFADAKAVNEKTVYNNNLRLTPTGGNDYWESAVVRPDVVLRDLIHIFHPEL 296
Query: 372 RSGSMRYYHRL 382
S S+ YY RL
Sbjct: 297 VSDSLYYYRRL 307
>gi|124002395|ref|ZP_01687248.1| periplasmic-binding protein of ABC transporter [Microscilla marina
ATCC 23134]
gi|123992224|gb|EAY31592.1| periplasmic-binding protein of ABC transporter [Microscilla marina
ATCC 23134]
Length = 393
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 99/362 (27%), Positives = 160/362 (44%), Gaps = 24/362 (6%)
Query: 37 NTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLV---EDASKAEKPT 93
N + P KYA+N K++ VT++ + Y LV + K KP
Sbjct: 39 NASQPLFDKTTLKYAQNFKVDYYDHYKVVTVTKAFTDQTDSLQYVLVPHQQPIPKGFKPH 98
Query: 94 DGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGD 153
+V VP++ V +T H L ++LG I G A+ ++ +P +QKR++ + + G
Sbjct: 99 Q--IVHVPVRSMVTLSTTHVALADVLGLTEFITGNANNAWISLPSMQKRIKEGKVVELGS 156
Query: 154 GMKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEI---KIPIIECAEYMETSALGRAEWIK 210
+ E ++ ++PD +L+S ++ GY K + +I + +ME L RAEW+K
Sbjct: 157 SRNFNQELLVSLQPDIVLMSS-THTAGYQKKQAVMGKSTCLIVNSGWMEQHPLARAEWLK 215
Query: 211 FYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGL 270
F + ++ A F +E+ YL +K A +++ SVL WY G S +
Sbjct: 216 FLAVFYNKEKLATEKFDAIEAQYLRVKKLAAQAQKKPSVLCGLPFKGTWYTAKGGSYMAQ 275
Query: 271 LYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLAEYQG---- 326
+DA Y + + SGS FETV KA DFW+ + + L E Q
Sbjct: 276 FIRDAQAAYFWNNTPGSGSHPFDFETVFAKAHNGDFWL-----NVSAAKSLKEIQNKDAR 330
Query: 327 YTALKPFKTGEIYGCQVDKTPYFEEVSW-----RPDWLLSDLIQLFHPD-LRSGSMRYYH 380
+T F IY W P +LSDL+++FHP+ L + YY
Sbjct: 331 FTKFAAFNQKRIYNNNKRINAGGGNDYWVTGFVNPHLVLSDLVKIFHPELLPEHELVYYQ 390
Query: 381 RL 382
+L
Sbjct: 391 QL 392
>gi|50841598|ref|YP_054825.1| periplasmic-binding protein [Propionibacterium acnes KPA171202]
gi|50839200|gb|AAT81867.1| periplasmic-binding protein [Propionibacterium acnes KPA171202]
Length = 422
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 89/295 (30%), Positives = 140/295 (47%), Gaps = 12/295 (4%)
Query: 97 LVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDG-M 155
++ VP+KR V +T + LGA ++I GV + + +K L+ + I G M
Sbjct: 125 IIDVPVKRVVASSTTQIPVFHTLGALDSIVGVNQIEQIYRGPARKALEARHIPSYGSSRM 184
Query: 156 KPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFL 215
+ D EKII +KPD +L + E G + ++ IP+++ +Y+E++ L RAEW+K YG L
Sbjct: 185 QIDTEKIISLKPDAVLAASSE-VGEFKQVQSAGIPVLQDLDYLESTPLARAEWMKAYGIL 243
Query: 216 FGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDA 275
+ +A F + Y + KAK++ SVL ++T WY+PG +S + DA
Sbjct: 244 LNKEGAATKSFDSIAERYAEVAKKAKNAADKPSVLVGQETKGQWYVPGADSYMIKFMTDA 303
Query: 276 NGKYAFADNNK-SGSLALPFETVLDKAGQADFWIFSYYGGFN----KQQLLAEYQGYTAL 330
A K +G+ E V +ADFW+ Y K L + Y L
Sbjct: 304 GASDVMAQAVKGNGATPTDAEVVFKYGSKADFWLNGNYMSMTTWHGKDDALKQNPRYANL 363
Query: 331 KPFKTGEIYGCQVDKTPYFEEVSW-----RPDWLLSDLIQLFHPDLRSGSMRYYH 380
F+ G ++ P W +PD +L+DL +FHPDL G YY+
Sbjct: 364 SAFQHGNVWNPSKRTAPDTGNDFWQSGIVQPDVVLADLTYIFHPDLMKGYTPYYY 418
>gi|34540449|ref|NP_904928.1| iron compound ABC transporter, periplasmic iron compound-binding
protein, putative [Porphyromonas gingivalis W83]
gi|34396762|gb|AAQ65827.1| iron compound ABC transporter, periplasmic iron compound-binding
protein, putative [Porphyromonas gingivalis W83]
Length = 391
Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats.
Identities = 92/363 (25%), Positives = 158/363 (43%), Gaps = 22/363 (6%)
Query: 25 CFGCSNNKAQMANT----NAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTY 80
C G S K T A + + F+YA+ I+ + V + +P K T+ Y
Sbjct: 20 CNGSSRGKGTEVETVSIDTADFNFPVRFEYAKGIQTVNHTGYKTVYIFHP-DKPDTMAVY 78
Query: 81 YLVEDASK---AEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIP 137
L SK A P + VP + +T + +L + + G + K +
Sbjct: 79 ILYPRDSKRPVARHPK-ALYIPVPARTIACLSTTQIGSLPLLDQTDKLVGCINLKNICNA 137
Query: 138 DVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIPIIECAEY 197
D++ R++ + + G GM +IE+I ++P+ LL F S +L I + E+
Sbjct: 138 DIRNRIKKGYVQEIGTGMTKNIEQIAGLRPEILLQDLFHVSDKDEELIASGINTVLYNEW 197
Query: 198 METSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGS 257
E LGRAEW+K L C + A +F+ +ES Y + T++++ +
Sbjct: 198 KERDLLGRAEWMKLTAMLLSCNRRAHEVFEQIESEYAEARKLVAEKTDTIAIMYGQDYNG 257
Query: 258 VWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNK 317
WY+PG S +++DA + +A K S FE + + A+ WI + G
Sbjct: 258 TWYLPGEYSYSTAMFRDARVSFDYA-AGKVSSQPCSFEYIFSRHRHAEIWICTMMGNIKT 316
Query: 318 -QQLLAEYQGYTALKPFKTGEIYGCQVDK--------TPYFEEVSWRPDWLLSDLIQLFH 368
+ LA + Y +TG++Y +D+ Y+E +RPD LL D+I++
Sbjct: 317 MDEFLALNERYRHFDATQTGKVY---IDRKRVNENGGNDYWESGLYRPDLLLKDIIKITR 373
Query: 369 PDL 371
P+L
Sbjct: 374 PEL 376
>gi|50841597|ref|YP_054824.1| periplasmic-binding protein of ABC transporter [Propionibacterium
acnes KPA171202]
gi|50839199|gb|AAT81866.1| periplasmic-binding protein of ABC transporter [Propionibacterium
acnes KPA171202]
Length = 414
Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats.
Identities = 88/340 (25%), Positives = 152/340 (44%), Gaps = 32/340 (9%)
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTL-----VQVPMKRGVFFTTAHANLMEML 119
VTL +P Y LV+ + DG L + +P + +T +ML
Sbjct: 79 VTLKHPSNTATKPVQYVLVQ-CGAPDPHLDGELAKAQRITIPTTKVALGSTTLPMKFQML 137
Query: 120 GAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDG---MKPDIEKIIDIKPDGLLLSPFE 176
G +++AG+ + + PD ++ L+ +A G + + EK+ ++PD + +
Sbjct: 138 GKLDSVAGMVNVDRVGNPDTRQALKDHKVASFAAGDNATEINTEKLAALRPDLFIFNLVS 197
Query: 177 NSGGYGKLDEIK---IPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNY 233
S K+D+IK IP++ ++E++ LGRAEWIK+ +++A+ + + Y
Sbjct: 198 GSDNTSKIDKIKEMGIPVVAEPNFLESTPLGRAEWIKYDSLFVNAEKTANQKYDEIAEKY 257
Query: 234 LALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALP 293
A + K +VL + VWY+ E+ +DA G+Y F D + S L
Sbjct: 258 HATAKRTAKVKTRPTVLHGSQYKGVWYIKPNENYAIQFLRDAGGEYVFKDLHGVASRKLD 317
Query: 294 FETVLDKAGQADFWIFSYYGGFNKQ---QLLAEYQGYTALKPFKTGEIYGCQVDKTP--- 347
E V+ +A ADFWI G K Q+L +LK G ++ D TP
Sbjct: 318 TEAVIKQAHDADFWI----DGPEKSSIPQILKADPRLKSLKALDNGNMW----DATPRAD 369
Query: 348 ------YFEEVSWRPDWLLSDLIQLFHPDLRSGSMRYYHR 381
Y++ RPD +L++L + HP+L +++R
Sbjct: 370 PKHGNDYWQTGVVRPDLVLANLTAILHPELDRDHQFHFYR 409
>gi|21673252|ref|NP_661317.1| hypothetical protein CT0413 [Chlorobium tepidum TLS]
gi|21646338|gb|AAM71659.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 423
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 86/365 (23%), Positives = 160/365 (43%), Gaps = 10/365 (2%)
Query: 27 GCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDA 86
C ++ + + + +YA+ M+R + ++ + K YL+
Sbjct: 59 ACKPSEHAKTASGTEANEAVPLRYAKLFTMKRENGCTRIDVFAGEKNSSVPVARYLLVPR 118
Query: 87 SKA--EKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQ 144
KA E D +V+ P++R + +++LGA A+ GV+ + V + +
Sbjct: 119 GKAVPEHDADMLVVKTPVRRLTCDNGLEVSFLDLLGASKALVGVSGKVLISHDRVHRAID 178
Query: 145 TKTIADCGDGMKPDIEKIIDIKPD-GLLLSPFENSGGYGKLDEIKIPIIECAEYMETSAL 203
T+A G G ++E ++ +KPD +++ F + +L I + Y E L
Sbjct: 179 DGTLAVTGYGRSTNMETLLALKPDVTFIITSFGVDLPF-RLRSYGITPGLFSAYHEEHPL 237
Query: 204 GRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPG 263
G EWI+F G G + A+++F+ E+ YLA++ + + ++ +V+ W
Sbjct: 238 GVVEWIRFMGAFLGKESLAEAIFREKEAAYLAMQQRVRKVQKRPTVIAGYMRKGTWSTMT 297
Query: 264 GESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLAE 323
S + A Y F + L E + QA FW+ ++ Q++L E
Sbjct: 298 APRSFVTMLDHAGADYLFKELEPERGYLLSGEVAMQAGQQAAFWLNTHSQASTLQEVLTE 357
Query: 324 YQGYTALKPFKTGEIY----GC-QVDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSG-SMR 377
Y + + G +Y C + KT Y++ PD +L+DL+ +FHP+L G ++R
Sbjct: 358 DGRYGEFRSVREGRVYNNNGSCFRNGKTRYWDIGMTEPDQILADLVAIFHPELMPGHTLR 417
Query: 378 YYHRL 382
YY RL
Sbjct: 418 YYRRL 422
>gi|29347508|ref|NP_811011.1| Fe3+ ABC transporter, periplasmic iron-binding protein [Bacteroides
thetaiotaomicron VPI-5482]
gi|29339408|gb|AAO77205.1| Fe3+ ABC transporter, periplasmic iron-binding protein [Bacteroides
thetaiotaomicron VPI-5482]
Length = 379
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 152/346 (43%), Gaps = 19/346 (5%)
Query: 49 KYAENIKM--ERTSDGIKVTLSNPWKKGKTL-HTYYLVEDASKAEKPTDGTLVQVPMKRG 105
+YA K+ + + + +SNPW+ K + +Y++ + G + +R
Sbjct: 40 EYATGFKILGAKNAQSTLIQVSNPWQGAKDVTMSYFISRNGELPPAGFTGPTIPAGAQRI 99
Query: 106 VFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDI--EKII 163
V ++++ +++ LG N I V+ Y+ P + +I D G P+I E ++
Sbjct: 100 VCMSSSYIAMLDALGQMNRIVAVSGINYIANPYILA--HKDSIKDMG----PEINYELLL 153
Query: 164 DIKPDGLLLSPFEN--SGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQS 221
+KPD +LL + + KL E+ IP + EY+E S LG+AEW+ L +
Sbjct: 154 GLKPDVVLLYGIGDAQTAVTDKLKELAIPYMYVGEYLEESPLGKAEWLVALSELTDSRDK 213
Query: 222 ADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAF 281
+F + Y ALK S + +V+ + W MP +S + L DA Y +
Sbjct: 214 GIEVFSEIPKRYQALKDLTASVEHHPTVMFNTPWNDSWVMPSTQSYMAQLVTDAGADYIY 273
Query: 282 ADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGC 341
+N + S + ET +AD+WI + +L + K + +Y
Sbjct: 274 KENTSNSSAPIGLETAYGLIQKADYWI-NVGTASTLDELKNMNPKFADAKSVRDKTVYNN 332
Query: 342 QVDKTP-----YFEEVSWRPDWLLSDLIQLFHPDLRSGSMRYYHRL 382
+ T Y+E RPD +L DLI +FHP+L S S YY L
Sbjct: 333 NLRITATGGNDYWESAVVRPDVVLRDLIHIFHPELVSDSTYYYRHL 378
>gi|67917540|ref|ZP_00511146.1| putative iron complex transport system substrate-binding protein
[Chlorobium limicola DSM 245]
gi|67784843|gb|EAM44216.1| putative iron complex transport system substrate-binding protein
[Chlorobium limicola DSM 245]
Length = 396
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 79/316 (25%), Positives = 141/316 (44%), Gaps = 16/316 (5%)
Query: 79 TYYLV-EDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIP 137
TY LV E+ E + +V++P+K+ +L++MLG A+AGV+ + +
Sbjct: 78 TYLLVPEEKPVPEDAGEAMVVRIPLKKVTCENGFQVSLLQMLGRSAALAGVSGKQRVGQD 137
Query: 138 DVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGY-----GKLDEIKIPII 192
DV +++ + +A G ++E+++ PD + F N+ G GKL +
Sbjct: 138 DVHRKIDSGELAVTGFMRGMNMERLLKTAPDMV----FVNTTGVASDVPGKLRSCGLTPG 193
Query: 193 ECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPD 252
+ +E LG EWI+F G F AD+LF+ E YL ++A+A + K+ S++
Sbjct: 194 MFSASLEEHPLGAFEWIRFMGAFFDRDSLADALFRERERAYLDVQARAAAVKRRPSLIAG 253
Query: 253 RKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYY 312
W G + A Y F + E L ADFW+ +++
Sbjct: 254 YSRKGAWSTMGSSRWFATMLDHAGADYLFKGKPFERGHLIGQEAGLSAGMSADFWVNTHF 313
Query: 313 GGFNKQQLLAEYQGYTALKPFKTGEIY----GCQVD-KTPYFEEVSWRPDWLLSDLIQLF 367
+ L E Y + + +Y C + ++ +++ P +L+DL+ +F
Sbjct: 314 RALSIDDLTGEDSRYGLFRSVRERRVYNNNGSCFANGRSRFWDTGMTEPHLILADLVSIF 373
Query: 368 HPDLRSG-SMRYYHRL 382
HP+L G ++YY RL
Sbjct: 374 HPELMPGHKLKYYRRL 389
>gi|67917521|ref|ZP_00511127.1| putative iron complex transport system substrate-binding protein
[Chlorobium limicola DSM 245]
gi|67784824|gb|EAM44197.1| putative iron complex transport system substrate-binding protein
[Chlorobium limicola DSM 245]
Length = 397
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 84/371 (22%), Positives = 157/371 (42%), Gaps = 18/371 (4%)
Query: 27 GCSNNKAQMANTNAPTD--STLVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYY--- 81
GC + + A D + +YA M++ + + P KG L +Y
Sbjct: 28 GCRQERERPVRRAAKRDVEQEIPLRYARRFTMKKVGSCTLIEIRKP--KGARLGVFYRYL 85
Query: 82 LVEDASKAEKP-TDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLIPDVQ 140
LV + A D +V P+++ ++ L +IAGV K+ P+++
Sbjct: 86 LVPEGETAPSGYPDALVVATPVRKVTCGLGLQVAMIGQLDRIESIAGVGMGKWTGNPEIR 145
Query: 141 KRLQTKTIADCGDGMKPDIEKIIDIKPD-GLLLSPFENSGGYGKLDEIKI-PIIECAEYM 198
+++ + + G ++E ++ I PD + S ++ + KL + I P + C ++
Sbjct: 146 RKMAAGEVLETGMSADMNMEAMVSIDPDIAFVYSSGSDTDIHDKLLSMGIRPGLVCM-HL 204
Query: 199 ETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTL-SVLPDRKTGS 257
E LG EWI+F+G +G ++ A++ F+ Y L+ K S +V+ T
Sbjct: 205 EEHPLGVLEWIRFFGAFYGREKEAEACFRSAAERYEKLETSVKDSFSVCPTVIVGHATRG 264
Query: 258 VWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNK 317
+W G + DA +Y ++ + + E L +A++W+ Y
Sbjct: 265 IWTTHGSSAWFIRFLHDAGARYILEESGEYEENPVSLEHALKVGIEAEYWVNPRYNAKTI 324
Query: 318 QQLLAEYQGYTALKPFKTGEIYG-----CQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLR 372
LL + + Y K G+++ +T ++E PD +L DL+ +FHP L
Sbjct: 325 TDLLGDDKRYQYFSSVKFGKVFNNDNLTFDDGRTLFWETGMMEPDEVLRDLVAIFHPGLV 384
Query: 373 SG-SMRYYHRL 382
G M+YY R+
Sbjct: 385 PGHRMKYYRRM 395
>gi|15669068|ref|NP_247873.1| hypothetical protein MJ0878 [Methanocaldococcus jannaschii DSM
2661]
gi|2496136|sp|Q58288|Y878_METJA Uncharacterized lipoprotein MJ0878 precursor
gi|1499708|gb|AAB98893.1| hypothetical protein MJ_0878 [Methanocaldococcus jannaschii DSM
2661]
Length = 414
Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats.
Identities = 101/411 (24%), Positives = 173/411 (42%), Gaps = 56/411 (13%)
Query: 11 MRKSL---ILYLLLLNLCFGCSN------NKAQMANTNAPTDS---TLVFKYAENIKMER 58
M+K L IL +++ + GC + N + TN P T + KYA+N+ +
Sbjct: 1 MKKLLAIGILCIMVTAVMSGCVSEKEININNSNKITTNMPVSEKNITKILKYAKNMNLIY 60
Query: 59 TSDGIKVTLSNPWKKGKTLHTYYLVEDASK--------------AEKPTDG-TLVQVPMK 103
+ + NP+ K + ++ K EK D ++ VP+
Sbjct: 61 YDENGNIV--NPYNGDKWKYKVFIDATGQKFLLKNKDDPVPSWAKEKLGDNFKVINVPLT 118
Query: 104 RGVFFTTAHANLMEMLGAQNAIAGV------ADAKYMLIPDVQKRLQTKTIADCGDGMKP 157
R + ++ LME + ++ G + D+ K L I D G P
Sbjct: 119 RVIVMSSTEIALMEAINDDGSVIGSVKGIMWGKSYKWYFKDINKSLAEGKIIDVGSSSNP 178
Query: 158 DIEKIIDIKPDGLLLSP-FENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLF 216
+ +KII+I P + + P ++ K E+ I + AEY+E LGR EW+K + +
Sbjct: 179 NWDKIIEINPQVIFVYPGYDGDKIIAKCKELGITYVADAEYLENDPLGRCEWVKMFAAFY 238
Query: 217 GCKQSADSLFKVVESNYLALKAKAKS-SKQTLSVLPDRKTGSVWYMPGGESSVG---LLY 272
+ A F+ VE N L + K K+ K T++ + + G Y+P S V + Y
Sbjct: 239 NKEPEAKRYFEKVEDNCLKVINKTKNCPKVTVAWGYNSQWGC--YVPENNSYVAKEIMFY 296
Query: 273 KDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIF----SYYGGFNKQQLLAEYQGYT 328
NG Y F D N +GS + +ET ++A AD W+ ++ F + GY
Sbjct: 297 --CNGDYIFKDLNGTGSAKINYETFAERAKDADVWVVPSSTAWLSTFKEDN-----PGYE 349
Query: 329 ALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSGSMRYY 379
K K G ++ C+ D Y++ + D ++ DL + HP+ G ++
Sbjct: 350 TFKAVKNGRVF-CESDD--YWQLGLLKTDEVIMDLATILHPEAFKGRKTHF 397
>gi|119873437|ref|YP_931444.1| periplasmic binding protein [Pyrobaculum islandicum DSM 4184]
gi|119674845|gb|ABL89101.1| periplasmic binding protein [Pyrobaculum islandicum DSM 4184]
Length = 428
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 94/345 (27%), Positives = 153/345 (44%), Gaps = 50/345 (14%)
Query: 49 KYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFF 108
+Y ++ + R + G ++ L P + L YY +A+ D +V P+KR V+
Sbjct: 99 QYEGDVYLLRDALGRRILLL-PRGMSQDLADYY------RAKYRPD-VVVYYPVKRAVYM 150
Query: 109 TTAHA----NLMEMLGAQNAIAGVADAKY-----MLIPDVQKRLQTKTIADCGDGMKPDI 159
+ L + +G + + + + +P+V+ L TIAD G PD
Sbjct: 151 ASTEVAMAYRLYKEMGRADVLRSIVGVMWGREYRWYLPEVEAMLNNGTIADVGPAYSPDF 210
Query: 160 EKIIDIKPDGLLLSPFENSGGYG------KLDEIKIPIIECAEYMETSALGRAEWIKFYG 213
EKI +KPD + + F G YG KLD++ IP E+ E +ALGRAEWIKF
Sbjct: 211 EKIASLKPDVMFV--FYYPGPYGTESVVKKLDQLGIPYAVVNEFQEQTALGRAEWIKFIA 268
Query: 214 FLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKT-------GSVWYMPGGES 266
+ A +F VE+ + SS +L DR G V Y P G +
Sbjct: 269 AFYNATDDAVKIFDRVEAKW--------SSLASLVADLDRPRVAWFTIFGGVLY-PAG-A 318
Query: 267 SVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLAEYQG 326
V L + A G+YA+A+ ++ + E V+ D I+S YG + + LL
Sbjct: 319 GVRDLIRIAGGRYAYANYSR-----VDLEVVMKHKNDVDVLIWSSYGVSSVKDLLKVEPR 373
Query: 327 YTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDL 371
L+P G +Y +++ + P+ LL +L+ + HP++
Sbjct: 374 LAELRPVVLGRVYAYS---PAFYQLANAYPERLLEELVWIIHPEV 415
>gi|126460126|ref|YP_001056404.1| periplasmic binding protein [Pyrobaculum calidifontis JCM 11548]
gi|126249847|gb|ABO08938.1| periplasmic binding protein [Pyrobaculum calidifontis JCM 11548]
Length = 435
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 83/321 (25%), Positives = 142/321 (44%), Gaps = 31/321 (9%)
Query: 64 KVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQN 123
+ L P G L +Y+ +K +V P++R V+ ++ H + L +
Sbjct: 120 RTILLAPRGAGPALTKFYV-------DKYKPAAVVYYPVQRAVYMSSTHVAMAYRLYKEG 172
Query: 124 AIAGVADAKYML---------IPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLL-- 172
A V + + +P+V K L+ TI D G P+ E+I +KPD + +
Sbjct: 173 GDAHVLKSVVGIMWGKEYAWHLPEVAKALENGTIRDVGPASSPNYEQIAALKPDVVFVYF 232
Query: 173 --SPFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVE 230
P+ +LD++KIP E+ E S LGRAEWIKF + +A +F E
Sbjct: 233 YPGPYGTEAVIQRLDQLKIPYAVVNEFQEGSPLGRAEWIKFIAAFYNLTDAAVKIFDGAE 292
Query: 231 SNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSL 290
+ + +L A A+ ++ V G V Y G + V L A G+YA+++ ++
Sbjct: 293 AKWNSLAALAREAEHRPRVAWFIIFGGVLYPAGPQ--VRELISLAGGRYAYSNYSR---- 346
Query: 291 ALPFETVLDKAGQADFWIFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFE 350
+ E VL K D ++S YG + +L + LK G +Y +++
Sbjct: 347 -VDLEVVL-KEKDVDVLVWSGYGVQSVSDILKIEPRLSELKAVAVGRLYAYS---DAFYQ 401
Query: 351 EVSWRPDWLLSDLIQLFHPDL 371
+ PD +L +L+ + HP+L
Sbjct: 402 LANAYPDQVLEELLWIIHPEL 422
>gi|68552677|ref|ZP_00592064.1| putative iron complex transport system substrate-binding protein
[Prosthecochloris aestuarii DSM 271]
gi|68240477|gb|EAN22751.1| putative iron complex transport system substrate-binding protein
[Prosthecochloris aestuarii DSM 271]
Length = 393
Score = 93.2 bits (230), Expect = 3e-17, Method: Composition-based stats.
Identities = 81/319 (25%), Positives = 133/319 (41%), Gaps = 20/319 (6%)
Query: 78 HTYYLVEDASKAEKPTDG-TLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVADAKYMLI 136
HTY LV + +DG T++++P+K +L++MLGA AI+GV+ +
Sbjct: 75 HTYILVPEHMPLPNNSDGATVLRIPLKSVTCENGFQVSLLDMLGAFGAISGVSGKTRIGH 134
Query: 137 PDVQKRLQTKTIADCGDGMKPDIEKIIDIKPD-------GLLLSPFENSGGYGKLDEIKI 189
V ++ + +A G + ++E ++ + PD + FE YG
Sbjct: 135 EQVHAKIDSGALAVTGFMRRMNMETLLKLDPDLAFVNVSSVSSDVFEKMSAYGLSTGYF- 193
Query: 190 PIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSV 249
CA +E LG EWIKF G F A +LF+ E YL L+ K + ++ +V
Sbjct: 194 ----CAS-IEEHPLGTLEWIKFMGAFFQQDSLAAALFREREQAYLELQQKTANREEKPAV 248
Query: 250 LPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIF 309
+ W G + A Y + L E ++ +A FW+
Sbjct: 249 IAGYSRKGAWSTMGSSRWFATMLDHAGASYLYEGLGLERGHILSNEVAMNAGIRAGFWVN 308
Query: 310 SYYGGFNKQQLLAEYQGYTALKPFKTGEIY----GCQVDKTPYFEEVSW-RPDWLLSDLI 364
+++ + LL + Y + +Y C + F +V P +L+DLI
Sbjct: 309 THFRVRDLDALLGMDRRYGLFTSVRQKTVYNNNHSCFSNGRSRFWDVGMTEPHVILADLI 368
Query: 365 QLFHPDLRSGS-MRYYHRL 382
+FHPDL + YYHRL
Sbjct: 369 SIFHPDLLPDHYLVYYHRL 387
>gi|18311894|ref|NP_558561.1| hypothetical protein PAE0367 [Pyrobaculum aerophilum str. IM2]
gi|18159309|gb|AAL62743.1| conserved hypothetical protein [Pyrobaculum aerophilum str. IM2]
Length = 440
Score = 92.8 bits (229), Expect = 3e-17, Method: Composition-based stats.
Identities = 80/318 (25%), Positives = 141/318 (44%), Gaps = 39/318 (12%)
Query: 70 PWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEML-------GAQ 122
P + L YY +K +++ PM+R V+ ++ H + L G
Sbjct: 131 PRGMAQDLAAYY-------TDKYKPAVVIKYPMERAVYMSSTHVAMAYRLYKEADNAGVL 183
Query: 123 NAIAGVADAKYM--LIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLL----SPFE 176
+I G+ K +P+V + L+ +IAD G P+ E I +KPD + + P+
Sbjct: 184 KSIVGIMWGKEYDWYLPEVAEMLKNGSIADVGPAYSPNYELIAKLKPDVVFVYFYPGPYG 243
Query: 177 NSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNY--- 233
KL+++ IP + E+ E LGRAEWIKF + +A +F +E+ +
Sbjct: 244 TESVIKKLEQLGIPYVVINEFQEGDPLGRAEWIKFIAAFYNLTSAAVGIFNGIENKWRGL 303
Query: 234 LALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADNNKSGSLALP 293
++L A + ++ G V Y P G + L+ + A G+YA+A+ ++ +
Sbjct: 304 VSLVADLDRPRVAWFII----YGGVLY-PAGAGARELI-RLAGGRYAYANYSR-----VD 352
Query: 294 FETVLDKAGQADFWIFSYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVS 353
E VL D ++S YG ++ L+P G +Y +P F ++S
Sbjct: 353 LEVVLKHKNDVDILVWSGYGVKTIDDIIKIEPRLKELRPVILGRVYA----YSPAFYQLS 408
Query: 354 -WRPDWLLSDLIQLFHPD 370
P+ LL +L+ + HP+
Sbjct: 409 NAYPEKLLEELVWIIHPE 426
>gi|28211051|ref|NP_781995.1| ferrichrome-binding periplasmic protein [Clostridium tetani E88]
gi|28203490|gb|AAO35932.1| ferrichrome-binding periplasmic protein [Clostridium tetani E88]
Length = 382
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 93/388 (23%), Positives = 162/388 (41%), Gaps = 28/388 (7%)
Query: 11 MRKSLILYLL--LLNLCFGCSNNKAQMANTNAPTDSTLVFK----YAENIKMERTSDGIK 64
M+K L +++L L C K NTN T K YA +E + +K
Sbjct: 5 MKKCLSIFILGVLTFSLVACGEKKDDAKNTNGSKQVTKEAKSENKYANKFSVEYLDNNVK 64
Query: 65 VTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNA 124
+ +K + ++ K E + +++ P+ + +T +L++ L ++
Sbjct: 65 LVTDGADRK-----VLLVPKEGKKPEGYDNVPVIRTPIDNVLLCSTMQTSLIKPLDVYDS 119
Query: 125 IAGVADAKYML----IPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGG 180
I V KY + I ++ KR+Q I G D E I KP+ + +
Sbjct: 120 IKCVT--KYNVNEGHIDEINKRMQKGDITYVGKIKALDYELIKSKKPEVAFIISVDVPKL 177
Query: 181 YGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKA 240
K DE+ IP I + +E LGR EWIKF + + AD K+ E + K
Sbjct: 178 APKFDELGIPYIVESSSLENHPLGRMEWIKFMSLFYNKEDIADKHLKMAEETITNVNNKL 237
Query: 241 KSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFA--DNNKSGSLALPFETVL 298
K + L G GG S G +Y A G+Y F D+ K G+ ++ FE
Sbjct: 238 KGKNKALVTAGVAHKGKFSVRRGG-SYQGNMYPLAGGEYVFKNLDSKKGGAASISFEDFY 296
Query: 299 DKAGQADFWIFSYYGGFNKQQL---LAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWR 355
K+ AD +I+ + + +AE +K K+G+++ Q P++ + +
Sbjct: 297 AKSVNADIYIYEAMTSSRPKTIKDVIAEAPVTEKMKAVKSGQVWITQ----PWWSQSVDK 352
Query: 356 PDWLLSDLIQLFHP-DLRSGSMRYYHRL 382
++ DL + HP + + +++YH+L
Sbjct: 353 LHEIIEDLAAICHPEEFKDHKIQHYHKL 380
>gi|150400556|ref|YP_001324322.1| ABC-type Fe3+-hydroxamate transport system periplasmic
component-like protein [Methanococcus aeolicus Nankai-3]
gi|150013259|gb|ABR55710.1| ABC-type Fe3+-hydroxamate transport system periplasmic
component-like protein [Methanococcus aeolicus Nankai-3]
Length = 454
Score = 89.0 bits (219), Expect = 5e-16, Method: Composition-based stats.
Identities = 90/357 (25%), Positives = 157/357 (43%), Gaps = 36/357 (10%)
Query: 49 KYAENIKMER-TSDGIKVTLSNPWKKGKTLHTYYLVEDAS------KAEK---PT--DGT 96
KYAENIK++ +G +V NP+ G++ +Y + EDA+ K E PT DG
Sbjct: 91 KYAENIKLKYYNENGNEV---NPYN-GESW-SYKIFEDATGQKFLLKNESQPVPTWADGK 145
Query: 97 ---LVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVAD------AKYMLIPDVQKRLQTKT 147
++ VP+ V ++ H LME L ++ G + ++++ L +
Sbjct: 146 YDKILTVPLTSVVTMSSTHIALMEPLNDDGSVIGSVKGVMWGGSYTWYFDNIKQGLDNGS 205
Query: 148 IADCGDGMKPDIEKIIDIKPDGLLLSP-FENSGGYGKLDEIKIPIIECAEYMETSALGRA 206
I D G P+ E I + P +++ P + K + I I +EY+E S L R
Sbjct: 206 IQDVGSSYSPNWENITALNPQAVIVYPGYSGDAIIEKCKSLNITYIANSEYLEGSYLARC 265
Query: 207 EWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSV--WYMPGG 264
EW+K + + ++ A F ++ L + K +S T+ V + S Y+P
Sbjct: 266 EWVKSFAAFYNKEEEAKKYFTKIDKRALNVNRKTYNSDYTVLVAWGKNYPSYGGTYVPKA 325
Query: 265 ESSV--GLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGFNKQQLLA 322
++ V G++ + + Y F D +GS + +ET ++A AD W+ +
Sbjct: 326 QAYVTKGII-DNCHADYIFKDIPGTGSSKIDYETFAERAKNADIWVVPSNTNW-LSSFKT 383
Query: 323 EYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSGSMRYY 379
++ GYT + K ++ D Y++ D LL DL + HP+ G +Y
Sbjct: 384 DHPGYTTFESTKNNRVFCISED---YYQLGLMNTDELLMDLGTIIHPEAFKGRTTHY 437
>gi|145592332|ref|YP_001154334.1| periplasmic binding protein [Pyrobaculum arsenaticum DSM 13514]
gi|145284100|gb|ABP51682.1| periplasmic binding protein [Pyrobaculum arsenaticum DSM 13514]
Length = 442
Score = 88.6 bits (218), Expect = 6e-16, Method: Composition-based stats.
Identities = 77/297 (25%), Positives = 134/297 (45%), Gaps = 42/297 (14%)
Query: 97 LVQVPMKRGVFFTTAHANLMEMLGAQN-------AIAGVA---DAKYMLIPDVQKRLQTK 146
+V P++R VF ++ L + +IAG+ D ++ L P+V+ LQ
Sbjct: 153 VVIYPVERAVFMAATQVAMVYRLYNETGDPRFLRSIAGIMWGRDYEWYL-PEVKAMLQNG 211
Query: 147 TIADCGDGMKPDIEKIIDIKPDGLLL----SPFENSGGYGKLDEIKIPIIECAEYMETSA 202
TI D G P+ E I+ +KPD + + P+ +L ++ +P + E+ E S
Sbjct: 212 TIKDVGSAYSPNYEAILALKPDVVFVYFSPGPYGTEAVIQRLQQLGVPYVVVNEFNERSP 271
Query: 203 LGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYM- 261
LGR EW+K F A ++F VE+ + L +L+ DR W++
Sbjct: 272 LGRFEWVKAVAAFFNATDKAVAVFNKVEARWDQLA--------SLAADLDRPR-VAWFII 322
Query: 262 ------PGGESSVGLLYKDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGF 315
P G +V L + A G+YA+A+ ++ + E VL D I+S YG
Sbjct: 323 YQGILYPAG-PAVRELIRLAGGRYAYANYSR-----VDLEVVLKHRNDVDVLIWSGYGVS 376
Query: 316 NKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVS-WRPDWLLSDLIQLFHPDL 371
+ ++ L+P TG +Y +P F ++S P+ +L +L+ + HP++
Sbjct: 377 KIEDIVKIEPRLKELRPVVTGRVYA----YSPAFYQLSNAYPERVLEELVSIIHPEI 429
>gi|15669063|ref|NP_247867.1| hypothetical protein MJ0872 [Methanocaldococcus jannaschii DSM
2661]
gi|1499701|gb|AAB98880.1| hypothetical protein MJ_0872 [Methanocaldococcus jannaschii DSM
2661]
Length = 405
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 107/414 (25%), Positives = 183/414 (44%), Gaps = 44/414 (10%)
Query: 1 LYFCRKY--SFTMRKSLILYLLLLNLCF---GC-------------SNNKAQMANTNAPT 42
L F +KY S MRK +L +L++ + GC + +++Q A T P
Sbjct: 3 LIFFKKYEQSDIMRKLFLLSILMIGVIVAFAGCVEESKTTTQLQQTTQSESQKAETQ-PK 61
Query: 43 DSTLVFKYAENIKM-ERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVP 101
V +YAE K+ +G V + K + LVE +KA +DG +++VP
Sbjct: 62 LGVNVVRYAETFKLYPHWDEGYCVVADSVGNK------FVLVEGNAKAPNISDGKIIKVP 115
Query: 102 MKRGVF-FTTAHANLMEMLGA-QNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKP-D 158
+KR V F + ++L A + I G P +++ + D G K +
Sbjct: 116 VKRIVTDFYCPIISAADILNAYHHTIVGAPKYAVEKSPKLKELFDEGKVVDIGSPSKGVN 175
Query: 159 IEKIIDIKPDGLLLSPFENSGGYG-KLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFG 217
E I+++ PD + L +++ KL E+ + + Y E + +GR EWIKF +G
Sbjct: 176 YELIVNLTPDIVFLGDWKSEDVVEEKLKELGVTVSRFYTYQEPTYMGRVEWIKFAAAFWG 235
Query: 218 CK--QSADSLFK---VVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLY 272
+ AD F+ V N L K + +++ T+ + KT ++ + G +S +
Sbjct: 236 SNAYKKADKWFENVVKVRENILK-KVQNVTNEPTVVIFSWSKTKNMPGIYGNDSYYSKMI 294
Query: 273 KDANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGG--FNKQQLLAEYQGYTAL 330
+ GK F D N+ G + ET ++A AD I ++ G K+ LL +
Sbjct: 295 AEFKGKNVFDDYNR-GYQYVDKETFYERAMNADVVILIWFYGDVKTKEDLLKINPNFAEF 353
Query: 331 KPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSG--SMRYYHRL 382
K FKTG Y V Y+ + P + D ++ HP+L G ++YY+++
Sbjct: 354 KAFKTGRFY---VSHPDYYVWEARDPAGYMMDFAKMIHPELFGGDDDLKYYYKI 404
>gi|15895706|ref|NP_349055.1| Ferrichrome-binding periplasmic protein [Clostridium acetobutylicum
ATCC 824]
gi|15025458|gb|AAK80395.1|AE007744_5 Ferrichrome-binding periplasmic protein [Clostridium acetobutylicum
ATCC 824]
Length = 471
Score = 85.1 bits (209), Expect = 6e-15, Method: Composition-based stats.
Identities = 74/248 (29%), Positives = 108/248 (43%), Gaps = 20/248 (8%)
Query: 136 IPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENSGGYG------KLDEIKI 189
I +++ L I GD PD EKI KPD +L G YG K DE+ I
Sbjct: 226 IDEIKSLLNDNKITYIGDTTSPDFEKISSSKPDVAILY----GGSYGLNNMMKKFDELHI 281
Query: 190 PIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSV 249
EY+E LGR EWIKF + + A++ F S +A + K S K+
Sbjct: 282 NYTSDNEYLEEDPLGRLEWIKFLSAFYDKEDKAENYFNQQVSKVMATENKVSSLKKPKVA 341
Query: 250 LPDRKTGSVWYMPGGESSVGLLYKDANGKYAFAD-NNKSGSLALPFETVLDKAGQADFWI 308
G V Y+P S + A G Y F D NNKSG + L E K+ AD I
Sbjct: 342 FGMVDNGKV-YIPAKNSYAAKMVDMAGGDYIFKDLNNKSGYITL--EDFYSKSKDADVLI 398
Query: 309 FSYYGGFNK--QQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQL 366
+S + + +L+ +KP K +++ D Y++ + + D ++ DL +
Sbjct: 399 YSSSKEYTPSLKSMLSAAPILKTIKPVKNKKVWCFGKD---YYQAID-KTDEIIEDLASI 454
Query: 367 FHPDLRSG 374
FHP+ G
Sbjct: 455 FHPESFKG 462
>gi|47117895|sp|Q58282|Y872_METJA Uncharacterized lipoprotein MJ0872 precursor
Length = 391
Score = 85.1 bits (209), Expect = 8e-15, Method: Composition-based stats.
Identities = 102/402 (25%), Positives = 177/402 (44%), Gaps = 42/402 (10%)
Query: 11 MRKSLILYLLLLNLCF---GC-------------SNNKAQMANTNAPTDSTLVFKYAENI 54
MRK +L +L++ + GC + +++Q A T P V +YAE
Sbjct: 1 MRKLFLLSILMIGVIVAFAGCVEESKTTTQLQQTTQSESQKAETQ-PKLGVNVVRYAETF 59
Query: 55 KM-ERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVF-FTTAH 112
K+ +G V + K + LVE +KA +DG +++VP+KR V F
Sbjct: 60 KLYPHWDEGYCVVADSVGNK------FVLVEGNAKAPNISDGKIIKVPVKRIVTDFYCPI 113
Query: 113 ANLMEMLGA-QNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKP-DIEKIIDIKPDGL 170
+ ++L A + I G P +++ + D G K + E I+++ PD +
Sbjct: 114 ISAADILNAYHHTIVGAPKYAVEKSPKLKELFDEGKVVDIGSPSKGVNYELIVNLTPDIV 173
Query: 171 LLSPFENSGGYG-KLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCK--QSADSLFK 227
L +++ KL E+ + + Y E + +GR EWIKF +G + AD F+
Sbjct: 174 FLGDWKSEDVVEEKLKELGVTVSRFYTYQEPTYMGRVEWIKFAAAFWGSNAYKKADKWFE 233
Query: 228 ---VVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFADN 284
V N L K + +++ T+ + KT ++ + G +S + + GK F D
Sbjct: 234 NVVKVRENILK-KVQNVTNEPTVVIFSWSKTKNMPGIYGNDSYYSKMIAEFKGKNVFDDY 292
Query: 285 NKSGSLALPFETVLDKAGQADFWIFSYYGG--FNKQQLLAEYQGYTALKPFKTGEIYGCQ 342
N+ G + ET ++A AD I ++ G K+ LL + K FKTG Y
Sbjct: 293 NR-GYQYVDKETFYERAMNADVVILIWFYGDVKTKEDLLKINPNFAEFKAFKTGRFY--- 348
Query: 343 VDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSG--SMRYYHRL 382
V Y+ + P + D ++ HP+L G ++YY+++
Sbjct: 349 VSHPDYYVWEARDPAGYMMDFAKMIHPELFGGDDDLKYYYKI 390
>gi|126700620|ref|YP_001089517.1| putative iron ABC transporter, substrate-binding protein
[Clostridium difficile 630]
gi|115252057|emb|CAJ69893.1| putative iron ABC transporter, substrate-binding protein
[Clostridium difficile 630]
Length = 379
Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 84/372 (22%), Positives = 154/372 (41%), Gaps = 21/372 (5%)
Query: 15 LILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKG 74
+ + + ++ GCS K+ N A T L KYA +E DGIK G
Sbjct: 17 IAMVIFMVGGLIGCS--KSDKENKQASTGKKLELKYASGFSVEDLEDGIKKV-----TDG 69
Query: 75 KTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVA-DAKY 133
+ + EK + +V+ P+ + +T A + + ++I V + +Y
Sbjct: 70 DNRELILIPKKIKIPEKYKNANIVRTPVDNVLIASTTQACSLRTIDELDSIKAVTTEEQY 129
Query: 134 MLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPF---ENSGGYGKLDEIKIP 190
I +++ ++ I G + PD EKI+D+ PD ++S ++ KL E+ +
Sbjct: 130 WTIKEIKDLMKDGKIHYVGSNLAPDYEKIVDLNPDLTIVSSGLSEADTKFIDKLKELGLN 189
Query: 191 IIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVL 250
+ EY E + GR EW + + A S + K K+ + V
Sbjct: 190 YVVDNEYKEQNPFGRMEWTSLIAAFYDKEDMATSELNKTVQKVEEVSKKIKNKAKPKVVW 249
Query: 251 PDRKTGSVWYMPGGESSVGLLYKDANGKYAFAD-NNKSGSLALPFETVLDKAGQADFWIF 309
GS + P +S V + K A G A A ++ G +++ E + + A AD +++
Sbjct: 250 ASVYEGSAYIAP-KDSYVDNMIKMAGGINACASIDSNEGRVSI--EQLHEVAKDADIFVY 306
Query: 310 SYYGGF--NKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLF 367
S + N + + L K G ++ D Y++ V + D L+ DL+++F
Sbjct: 307 SSSSDYAPNLDSIKSSAPVLADLDVVKNGNLWVFAPD---YYQSVD-KTDELIVDLVEMF 362
Query: 368 HPDLRSGSMRYY 379
HP +++Y
Sbjct: 363 HPGTTGEKIKHY 374
>gi|145953445|ref|ZP_01802453.1| hypothetical protein CdifQ_04003435 [Clostridium difficile
QCD-32g58]
Length = 376
Score = 75.5 bits (184), Expect = 5e-12, Method: Composition-based stats.
Identities = 84/372 (22%), Positives = 154/372 (41%), Gaps = 21/372 (5%)
Query: 15 LILYLLLLNLCFGCSNNKAQMANTNAPTDSTLVFKYAENIKMERTSDGIKVTLSNPWKKG 74
+ + + ++ GCS K+ N A T L KYA +E DGIK G
Sbjct: 14 IAMVIFMVGGLIGCS--KSDKENKQASTGKKLELKYASGFSVEDLEDGIKKV-----TDG 66
Query: 75 KTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGVA-DAKY 133
+ + EK + +V+ P+ + +T A + + ++I V + +Y
Sbjct: 67 DNRELILIPKKIKIPEKYKNANIVRTPVDNVLIASTTQACSLRTIDELDSIKAVTTEEQY 126
Query: 134 MLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPF---ENSGGYGKLDEIKIP 190
I +++ ++ I G + PD EKI+D+ PD ++S ++ KL E+ +
Sbjct: 127 WTIKEIKDLMKDGKIHYVGSNLAPDYEKIVDLNPDLTIVSSGLSEADTKFIDKLKELGLN 186
Query: 191 IIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVL 250
+ EY E + GR EW + + A S + K K+ + V
Sbjct: 187 YVVDNEYKEQNPFGRMEWTSLIAAFYDKEDMATSELNKTVQKVEEVSKKIKNKAKPKVVW 246
Query: 251 PDRKTGSVWYMPGGESSVGLLYKDANGKYAFAD-NNKSGSLALPFETVLDKAGQADFWIF 309
GS + P +S V + K A G A A ++ G +++ E + + A AD +++
Sbjct: 247 ASVYEGSAYIAP-KDSYVDNMIKMAGGINACASIDSNEGRVSI--EQLHEVAKDADIFVY 303
Query: 310 SYYGGF--NKQQLLAEYQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLF 367
S + N + + L K G ++ D Y++ V + D L+ DL+++F
Sbjct: 304 SSSSDYAPNLDSIKSSAPVLADLDVVKNGNLWVFAPD---YYQSVD-KTDELIVDLVEMF 359
Query: 368 HPDLRSGSMRYY 379
HP +++Y
Sbjct: 360 HPGTTGEKIKHY 371
>gi|150398887|ref|YP_001322654.1| periplasmic binding protein [Methanococcus vannielii SB]
gi|150011590|gb|ABR54042.1| periplasmic binding protein [Methanococcus vannielii SB]
Length = 411
Score = 70.1 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 78/341 (22%), Positives = 141/341 (41%), Gaps = 28/341 (8%)
Query: 50 YAENIKME-RTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKR--GV 106
+AEN +ME + +G + + T + + L+++ + K + T++ VP+ R +
Sbjct: 70 FAENFEMEPKWDEGYSYVVDS------TGNKFVLLKEGASDPKISGTTVLSVPLTRISTI 123
Query: 107 FFT--TAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIID 164
F+ + A++++ ++ G+ ++ ++ R I G D +K++
Sbjct: 124 FYAPLMSTADILDKDEIYDSFKGITNSYAKYSSKIETRYNQGEILGIGSASAMDYDKVVA 183
Query: 165 IKPDGLLLSPF-ENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQS-- 221
PD + L + ++ KL E+ I Y E + +GR EW KF FG + S
Sbjct: 184 SNPDIVFLGEWVQHDDMENKLKELNILPSRVFTYQEPTFMGRTEWTKFAAAFFGEENSDE 243
Query: 222 -----ADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDAN 276
D+ K E KA + + S R T +V G ++ + +
Sbjct: 244 IEDYFQDTWRKRNELLRTTSKANDYPTVVSFSWSTARNTATV---QGAQNYNSRMVNEFG 300
Query: 277 GKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGGF---NKQQLLAEYQGYTALKPF 333
G+Y F D S S + ET ++A AD I + G K++LLA + K +
Sbjct: 301 GEYVFNDIPGSSSNTIDKETFYERAMTADVVIMRVFTGNEIKTKEELLAFNPDFANFKAY 360
Query: 334 KTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSG 374
+ G Y D YF + P + D ++ P L SG
Sbjct: 361 QNGRFYTSNRD---YFIQEMKDPKRYMEDFARMVQPTLFSG 398
>gi|106895383|ref|ZP_01362479.1| iron compound ABC transporter, periplasmic iron compound-binding
protein, putative [Clostridium sp. OhILAs]
gi|106773303|gb|EAT29891.1| iron compound ABC transporter, periplasmic iron compound-binding
protein, putative [Clostridium sp. OhILAs]
Length = 394
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 80/352 (22%), Positives = 144/352 (40%), Gaps = 27/352 (7%)
Query: 13 KSLILYLLLLNLCFGCSNNKAQMANTNA-------------PTDSTLVFKYAENIKMERT 59
+++++ LL+ + GC+++K TN + T+ KYA++ ++
Sbjct: 10 RTMMILLLVSSFLVGCTSSKGGAKETNRIGQEEINGKNTGLVHERTMELKYAKHFAVDYY 69
Query: 60 SDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRGVFFTTAHANLMEML 119
DG KV +K + E E ++Q P++ ++T A +
Sbjct: 70 KDGYKVITDAADRK-----ILLVPEGKEVPEMEEKMVVIQKPIETVALYSTIDAAWFRPV 124
Query: 120 GAQNAI-AGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIIDIKPDGLLLSPFENS 178
GA + I A +A IP++ + L+T I+ G D E + + P LLS
Sbjct: 125 GALDRIVATTFEASSWRIPEIVEGLETGRISFIGKTSALDYELLQAVGPTVNLLSKSSEK 184
Query: 179 GGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQSADSLFKVVESNYLALKA 238
+ K DE+ + I Y+E R EW+KF L ++ A F + A+
Sbjct: 185 ELFPKYDELDLDYISMGAYLEEDPRARLEWVKFASALLDKEEEAIQFFDEELARMEAVSK 244
Query: 239 KAKSS---KQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYAFAD--NNKSGSLALP 293
KA S K ++ + + SV+Y+ G+ + + A G + D +K+G +
Sbjct: 245 KAAESTEEKLNVAFVYFSPSKSVFYVHNGKGHHAVTTEIAGGIHYPKDFAQDKNGFVPTT 304
Query: 294 FETVLDKAGQADFWIF---SYYGGFNKQQLLAEYQGYTALKPFKTGEIYGCQ 342
E D ++ S +G N + LL + + LK + G I+G Q
Sbjct: 305 NEEFYKMMSDVDLILYDNISGHGIQNMKDLLEKASFVSDLKVVQEGRIWGLQ 356
>gi|42526261|ref|NP_971359.1| iron compound ABC transporter, periplasmic iron compound-binding
protein, putative [Treponema denticola ATCC 35405]
gi|41816373|gb|AAS11240.1| iron compound ABC transporter, periplasmic iron compound-binding
protein, putative [Treponema denticola ATCC 35405]
Length = 385
Score = 64.3 bits (155), Expect = 1e-08, Method: Composition-based stats.
Identities = 73/333 (21%), Positives = 142/333 (42%), Gaps = 21/333 (6%)
Query: 46 LVFKYAENIKMERTSDGIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKRG 105
L KYA++ ++ GIK +K + ++ V E + +++ P+K
Sbjct: 40 LELKYAKSFSVDYYEQGIK-----KYKDVEGREVWF-VPRGKTIEGGENLNVIETPVKSL 93
Query: 106 VFFTTAHANLMEMLGAQNAIAGVA-DAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIID 164
V +T HA L+ +G + + G + + IP+++K + I G D E +
Sbjct: 94 VILSTVHATLLRPIGELDKVTGTSVQSDTWKIPEIKKGMDDGKIKFVGSKNALDYEMLHA 153
Query: 165 IKPDGLLLSPFEN----SGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQ 220
+ D +LL+ +EN G K +E+ + I + + E R EWIKF G + G ++
Sbjct: 154 LNADAILLT-YENMARTPGIISKFNELGLKWIGVSNHQEADPRARLEWIKFAGEITGKEK 212
Query: 221 SADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDANGKYA 280
A+ ++ + A++ K S + + ++Y+ +++ KY
Sbjct: 213 EANKYYERELAKINAVEEMNKKSANKTTFASAFMSKDIFYVRNAGDYNVKMFEILGIKYI 272
Query: 281 FADNN--KSGSLALPFETVLDKAGQADFWIFSYYGGF---NKQQLLAEYQGYTALKPFKT 335
F D N K+G+ + E A +ADF+ + G + L+A + LK K
Sbjct: 273 FKDLNPDKNGNTKMNAEEFYKVAEKADFFFYDSVNGSAIKSTSDLIAFAEYLKDLKAVKE 332
Query: 336 GEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFH 368
++G K Y++ D ++ +L ++ H
Sbjct: 333 NMVWGV---KPNYYQSADHVAD-MIEELNKIIH 361
>gi|118579685|ref|YP_900935.1| ABC-type Fe3+-hydroxamate transport system periplasmic
component-like protein [Pelobacter propionicus DSM 2379]
gi|118502395|gb|ABK98877.1| ABC-type Fe3+-hydroxamate transport system periplasmic
component-like protein [Pelobacter propionicus DSM 2379]
Length = 374
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 69/294 (23%), Positives = 128/294 (43%), Gaps = 17/294 (5%)
Query: 97 LVQVPMKRGVFFTTAHANLMEMLGA-QNAIAGVA-DAKYMLIPDVQKRLQTKTIADCGDG 154
+++VP+K V + + +LG + + GV K DV++ ++ I G+
Sbjct: 78 VIRVPVKSVVAYGDFDVATLAVLGVLEETLVGVTRPEKRWYRDDVKRCFRSGRIVYLGEP 137
Query: 155 MKPDIEKIIDIKPDGLLLSPFENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGF 214
D E++ +P+ +L + LDE+KIP + + + R ++KF
Sbjct: 138 NSLDYEQLKQQQPELVLTW---DPSVIPMLDELKIPAVVTSTPVAMCLNARMGFVKFLAP 194
Query: 215 LFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVL-PDRKTGSVWYMPGGESSVGLLYK 273
F ++ A++ F+ V AL+A++ S+ V+ D V P G + VG L K
Sbjct: 195 FFNREKEAEAYFRRVNDALTALRARSAKSRDKKKVMWGDIYEKRVLVEP-GNAWVGELLK 253
Query: 274 DANGKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYG---GFNKQQLLAEYQGYTA- 329
A Y F D + + + E L AD + F+Y G G ++ LA
Sbjct: 254 YAETDYLFNDVYGTSCIEISVERFLTSGEDADVY-FTYRGRSSGVTSKEALARVNPLVKN 312
Query: 330 LKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSG-SMRYYHRL 382
++P G +Y P++ + R D + ++L + HPD+ G ++++ L
Sbjct: 313 IRPITHGTVY----LPLPHYSQSGDRLDEIFTELAAIVHPDVYPGYRLKFFEEL 362
>gi|153810499|ref|ZP_01963167.1| hypothetical protein RUMOBE_00880 [Ruminococcus obeum ATCC 29174]
gi|149833678|gb|EDM88759.1| hypothetical protein RUMOBE_00880 [Ruminococcus obeum ATCC 29174]
Length = 375
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 65/279 (23%), Positives = 125/279 (44%), Gaps = 20/279 (7%)
Query: 43 DSTLVFKYAENIKMERTSDGIK-VTLSNPWKKGKTLHTYYLVEDASKAEKPTDG--TLVQ 99
D +L +YA+ ++ DG +T++ + + LV + +A + D +++
Sbjct: 33 DHSLELQYADQFSVDYYEDGYALITIAGDGQ-------FLLVPEGKEAPEGLDSDIAVIK 85
Query: 100 VPMKRGVFFTTAHANLMEMLGAQNAIA-GVADAKYMLIPDVQKRLQTKTIADCGDGMKPD 158
P+ T+ +L L ++I+ +A I + +K L+ +I+ G PD
Sbjct: 86 QPLDNIYLVATSAMDLFCALDGLDSISLSGTNADGWYIDEAKKALEDGSISFAGKYSAPD 145
Query: 159 IEKIIDIKPDGLLLSP--FENSGGYGKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLF 216
E I+ D + S + KL++ IP++ E+ LGR EW+K YG L
Sbjct: 146 YELILSKNCDLAIESTMIYHKPEVKEKLEQFGIPVLVEHSSYESHPLGRTEWLKLYGVLL 205
Query: 217 GCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDAN 276
G ++ AD LF+ + + L ++S+ +T++ G+ G+ V + + A
Sbjct: 206 GKEELADKLFQ-EQVDKLKAIEDSESTGKTVAFFYINSVGAANVRKSGD-YVSKMIELAG 263
Query: 277 GKYAFA-----DNNKSGSLALPFETVLDKAGQADFWIFS 310
GKY F+ D+N ++ + E A AD+ I++
Sbjct: 264 GKYIFSDLGAEDDNSLSTMNMQMEEFYAGAKDADYIIYN 302
>gi|113938277|ref|ZP_01424146.1| periplasmic binding protein [Herpetosiphon aurantiacus ATCC 23779]
gi|113900067|gb|EAU19060.1| periplasmic binding protein [Herpetosiphon aurantiacus ATCC 23779]
Length = 435
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 32/299 (10%)
Query: 94 DGTLVQVPMKRGVFFTTAHANLMEMLGAQNAIAGV----ADAKYMLIPDVQKRL-QTKTI 148
+ +V +P+ R ++ M+ LG ++++GV + +P + ++ + I
Sbjct: 133 NAMVVTIPITRVWEGGSSTFAAMDALGVVDSLSGVVGSMTGSANEYLPSIAAQVAKASVI 192
Query: 149 ADCGDGMKPDIEKIIDIKPDGLLLSPFENSGG---YGKLDEIKIPIIECAEYMETSALGR 205
+ G D+E I KPD L N+ G ++ IP + + + E S LG
Sbjct: 193 KEASYG--EDLELIAAGKPDIYL-----NTNGREWMTNARQVGIPALHYSPFSE-SPLGS 244
Query: 206 AEWIKFYGFLFGCKQSADSLFKVVESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGE 265
AE +KF + + AD++F +E YLAL+ KA+++ SVL T +
Sbjct: 245 AEQVKFLALFYNLEAKADAIFTPIEREYLALREKAQAATNKPSVLIGNVTQDGRFGTRNL 304
Query: 266 SSV-GLLYKDANGKYAFADNN-------KSGSLALPFETVLDKAGQADFWIFSYY--GGF 315
+ +L +DA G+ D S ++ E ++ ADFW Y
Sbjct: 305 DRLESVLMRDAGGELVLTDTELNLGGGSTGFSSSIDLEKAIEIGANADFWFNLVYVPSDN 364
Query: 316 NKQQLLAE---YQGYTALKPFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDL 371
+ +A ++AL+ + +G D YF + D LL+D + + HP+L
Sbjct: 365 TASEFIATNPLNASFSALQKGNSFHRFGRAED---YFSNGAVYVDQLLADAVSILHPEL 420
>gi|150400549|ref|YP_001324315.1| periplasmic binding protein [Methanococcus aeolicus Nankai-3]
gi|150013252|gb|ABR55703.1| periplasmic binding protein [Methanococcus aeolicus Nankai-3]
Length = 421
Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats.
Identities = 77/353 (21%), Positives = 147/353 (41%), Gaps = 32/353 (9%)
Query: 50 YAENIKMERTSD-GIKVTLSNPWKKGKTLHTYYLVEDASKAEKPTDGTLVQVPMKR--GV 106
+AE+ K+E D G V + + K + L+ED D ++ P+ + +
Sbjct: 80 FAEHFKLEPHWDNGYCVVIDSEDNK------FVLLEDGGTNPNIPDAKVINAPVGKIATI 133
Query: 107 FF--TTAHANLMEMLGAQNAIAGVADAKYMLIPDVQKRLQTKTIADCGDGMKPDIEKIID 164
F+ T + A++++ ++I G P++ R IAD G + E +++
Sbjct: 134 FYCPTVSTADILKDASCYDSIKGTTGYVIGYSPELTTRYNEGKIADIGKSSSINYETVLN 193
Query: 165 IKPDGLLLSPFENSGGY-GKLDEIKIPIIECAEYMETSALGRAEWIKFYGFLFGCKQ--S 221
I PD + L + + +L + + + Y E + +GR EWIKF +G +
Sbjct: 194 ISPDIVFLGDWSSHDTMEEQLVKNGLTVSRFYTYDEPTYMGRIEWIKFSAAFWGEDKYNK 253
Query: 222 ADSLFKVV--ESNYLALKAKAKSSKQTLSVLPDRKTGSVWYMPGGESSVGLLYKDAN--- 276
++ F+ N + K A++ ++++ K PG S K AN
Sbjct: 254 TENYFQDAWKARNDILRKVYAENDYPSVTLFSWSKYKDA---PGVYGSAHYYNKMANNFK 310
Query: 277 GKYAFADNNKSGSLALPFETVLDKAGQADFWIFSYYGG---FNKQQLLAEYQ--GYTALK 331
G+Y F D + L ET ++A +D I +Y K++L Y + K
Sbjct: 311 GEYVFNDIPGTSFQYLDKETFYERAMDSDVCIMRHYYSNEITTKEELFGNYSTANFDKFK 370
Query: 332 PFKTGEIYGCQVDKTPYFEEVSWRPDWLLSDLIQLFHPDLRSG--SMRYYHRL 382
+ G Y + K Y+ + P + D ++ HP+L G ++Y++++
Sbjct: 371 SLQNGRFY---ITKPKYYVYEAIDPAGYMMDYAKMLHPELFGGDDDLKYHNKI 420
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,471,404,902
Number of Sequences: 5470121
Number of extensions: 62409931
Number of successful extensions: 126004
Number of sequences better than 1.0e-05: 73
Number of HSP's better than 0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 125789
Number of HSP's gapped (non-prelim): 74
length of query: 382
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 248
effective length of database: 1,161,091,510
effective search space: 287950694480
effective search space used: 287950694480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)