BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SP_1708
(114 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15901542|ref|NP_346146.1| hypothetical protein SP_1708 [... 177 2e-43
gi|149011427|ref|ZP_01832674.1| hypothetical protein CGSSp1... 176 3e-43
gi|148994025|ref|ZP_01823381.1| preprotein translocase subu... 172 4e-42
gi|148984150|ref|ZP_01817445.1| preprotein translocase subu... 172 6e-42
gi|149002003|ref|ZP_01826957.1| preprotein translocase subu... 161 1e-38
gi|148994024|ref|ZP_01823380.1| hypothetical protein CGSSp9... 121 1e-26
gi|148984149|ref|ZP_01817444.1| hypothetical protein CGSSp3... 119 4e-26
gi|148997760|ref|ZP_01825324.1| hypothetical protein CGSSp1... 116 3e-25
gi|149006627|ref|ZP_01830326.1| hypothetical protein CGSSp1... 116 4e-25
gi|149011428|ref|ZP_01832675.1| hypothetical protein CGSSp1... 115 9e-25
gi|15901541|ref|NP_346145.1| hypothetical protein SP_1707 [... 113 3e-24
gi|148989362|ref|ZP_01820730.1| hypothetical protein CGSSp6... 112 6e-24
gi|15903594|ref|NP_359144.1| hypothetical protein spr1551 [... 111 1e-23
gi|149002002|ref|ZP_01826956.1| hypothetical protein CGSSp1... 85 1e-15
>gi|15901542|ref|NP_346146.1| hypothetical protein SP_1708 [Streptococcus pneumoniae TIGR4]
gi|15903595|ref|NP_359145.1| hypothetical protein spr1552 [Streptococcus pneumoniae R6]
gi|149020787|ref|ZP_01835316.1| nicotinate-nucleotide pyrophosphorylase [Streptococcus pneumoniae
SP23-BS72]
gi|14973203|gb|AAK75786.1| hypothetical protein SP_1708 [Streptococcus pneumoniae TIGR4]
gi|15459217|gb|AAL00356.1| Hypothetical protein [Streptococcus pneumoniae R6]
gi|147930428|gb|EDK81411.1| nicotinate-nucleotide pyrophosphorylase [Streptococcus pneumoniae
SP23-BS72]
Length = 114
Score = 177 bits (448), Expect = 2e-43, Method: Composition-based stats.
Identities = 114/114 (100%), Positives = 114/114 (100%)
Query: 1 MSVMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVL 60
MSVMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVL
Sbjct: 1 MSVMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVL 60
Query: 61 FFNTVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
FFNTVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH
Sbjct: 61 FFNTVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
>gi|149011427|ref|ZP_01832674.1| hypothetical protein CGSSp19BS75_08452 [Streptococcus pneumoniae
SP19-BS75]
gi|147764417|gb|EDK71348.1| hypothetical protein CGSSp19BS75_08452 [Streptococcus pneumoniae
SP19-BS75]
Length = 114
Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats.
Identities = 113/114 (99%), Positives = 113/114 (99%)
Query: 1 MSVMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVL 60
MSVMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVL
Sbjct: 1 MSVMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVL 60
Query: 61 FFNTVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
FFNT LRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH
Sbjct: 61 FFNTALRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
>gi|148994025|ref|ZP_01823381.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP9-BS68]
gi|147927492|gb|EDK78520.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP9-BS68]
Length = 111
Score = 172 bits (437), Expect = 4e-42, Method: Composition-based stats.
Identities = 110/111 (99%), Positives = 110/111 (99%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYW YIPFYSLFSLAWTVVSVLFFN
Sbjct: 1 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWIYIPFYSLFSLAWTVVSVLFFN 60
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH
Sbjct: 61 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 111
>gi|148984150|ref|ZP_01817445.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP3-BS71]
gi|148989363|ref|ZP_01820731.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP6-BS73]
gi|148997761|ref|ZP_01825325.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP11-BS70]
gi|147756260|gb|EDK63302.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP11-BS70]
gi|147923439|gb|EDK74552.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP3-BS71]
gi|147925113|gb|EDK76193.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP6-BS73]
Length = 111
Score = 172 bits (436), Expect = 6e-42, Method: Composition-based stats.
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN
Sbjct: 1 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 60
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH
Sbjct: 61 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 111
>gi|149002003|ref|ZP_01826957.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP14-BS69]
gi|147759812|gb|EDK66802.1| preprotein translocase subunit SecA [Streptococcus pneumoniae
SP14-BS69]
Length = 110
Score = 161 bits (407), Expect = 1e-38, Method: Composition-based stats.
Identities = 107/111 (96%), Positives = 107/111 (96%), Gaps = 1/111 (0%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFKFLLLAPYFYFDNWIEKANRNSKFF F FYWFYIPFYSLFSLAWTVVSVLFFN
Sbjct: 1 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFQ-FLLFYWFYIPFYSLFSLAWTVVSVLFFN 59
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH
Sbjct: 60 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 110
>gi|148994024|ref|ZP_01823380.1| hypothetical protein CGSSp9BS68_01718 [Streptococcus pneumoniae
SP9-BS68]
gi|147927491|gb|EDK78519.1| hypothetical protein CGSSp9BS68_01718 [Streptococcus pneumoniae
SP9-BS68]
Length = 111
Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats.
Identities = 80/111 (72%), Positives = 92/111 (82%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFK ++L P FYF +WI+K NR SKFFPIFYYFYW YIP Y+LFSL+WTV SVLFFN
Sbjct: 1 MEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYIPLYALFSLSWTVFSVLFFN 60
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
VLRN+TDIKLWGIW L +L+A +WL Y CFK+M LR+ELGKSKGGRH
Sbjct: 61 IVLRNLTDIKLWGIWLLLLLIAFASDWLDYICFKKMLDLRRELGKSKGGRH 111
>gi|148984149|ref|ZP_01817444.1| hypothetical protein CGSSp3BS71_02972 [Streptococcus pneumoniae
SP3-BS71]
gi|147923438|gb|EDK74551.1| hypothetical protein CGSSp3BS71_02972 [Streptococcus pneumoniae
SP3-BS71]
Length = 111
Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats.
Identities = 81/111 (72%), Positives = 91/111 (81%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFK ++L P FYF +WI+K NR SKFFPIFYYFYW YI YSLFSLAWTV SVLFFN
Sbjct: 1 MEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYITLYSLFSLAWTVFSVLFFN 60
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
VLRN+TDIKLWGIW L +L+A +WL Y CFK+M LR+ELGKSKGGRH
Sbjct: 61 IVLRNLTDIKLWGIWLLLLLIAFASDWLDYICFKKMLDLRRELGKSKGGRH 111
>gi|148997760|ref|ZP_01825324.1| hypothetical protein CGSSp11BS70_02594 [Streptococcus pneumoniae
SP11-BS70]
gi|147756259|gb|EDK63301.1| hypothetical protein CGSSp11BS70_02594 [Streptococcus pneumoniae
SP11-BS70]
Length = 111
Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats.
Identities = 80/111 (72%), Positives = 90/111 (81%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFK ++L P FYF +WI+K NR SKFFPIFYYFYW YI YSLFSLAWTV SVLFFN
Sbjct: 1 MEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYITLYSLFSLAWTVFSVLFFN 60
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
VLRN+TDIKLWGIW L +L+A +WL Y CFK+M LR+ELGKSKG RH
Sbjct: 61 IVLRNLTDIKLWGIWLLLLLIAFASDWLDYICFKKMLDLRRELGKSKGVRH 111
>gi|149006627|ref|ZP_01830326.1| hypothetical protein CGSSp18BS74_02521 [Streptococcus pneumoniae
SP18-BS74]
gi|147761925|gb|EDK68888.1| hypothetical protein CGSSp18BS74_02521 [Streptococcus pneumoniae
SP18-BS74]
Length = 116
Score = 116 bits (291), Expect = 4e-25, Method: Composition-based stats.
Identities = 77/108 (71%), Positives = 88/108 (81%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFK ++L P FYF +WI+K NR SKFFPIFYYFYW YI Y+LFSLAWTV SVLFFN
Sbjct: 1 MEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYITLYALFSLAWTVFSVLFFN 60
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKG 111
VLRN+TDIKLWGIW L +L+A +WL Y CFK+M LR+ELGKSKG
Sbjct: 61 IVLRNLTDIKLWGIWLLLLLIAFASDWLDYICFKKMLDLRRELGKSKG 108
>gi|149011428|ref|ZP_01832675.1| hypothetical protein CGSSp19BS75_08457 [Streptococcus pneumoniae
SP19-BS75]
gi|147764418|gb|EDK71349.1| hypothetical protein CGSSp19BS75_08457 [Streptococcus pneumoniae
SP19-BS75]
Length = 111
Score = 115 bits (287), Expect = 9e-25, Method: Composition-based stats.
Identities = 80/111 (72%), Positives = 91/111 (81%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFK ++L P FYF +WI+K NR SKFFPIFYYFYW YI Y+LFSLAWTV SVLFFN
Sbjct: 1 MEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYITLYALFSLAWTVFSVLFFN 60
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
VLRN+TDIKLWGIW L +L+A +WL Y FK+M RLR+ELGKSKGGRH
Sbjct: 61 IVLRNLTDIKLWGIWLLLLLIAFASDWLAYVFFKKMIRLRRELGKSKGGRH 111
>gi|15901541|ref|NP_346145.1| hypothetical protein SP_1707 [Streptococcus pneumoniae TIGR4]
gi|14973202|gb|AAK75785.1| hypothetical protein SP_1707 [Streptococcus pneumoniae TIGR4]
Length = 112
Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats.
Identities = 79/112 (70%), Positives = 91/112 (81%)
Query: 3 VMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFF 62
+MEHLFK ++L P FYF +WI+K NR SKFFPIFYYFYW YI Y+LFSLAWTV SVLFF
Sbjct: 1 MMEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYITLYALFSLAWTVFSVLFF 60
Query: 63 NTVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKGGRH 114
N VLRN+TDIKLWGIW L +L+A +WL Y FK+M LR+ELGKSKGGRH
Sbjct: 61 NIVLRNLTDIKLWGIWLLLLLIAFASDWLAYVFFKKMLDLRRELGKSKGGRH 112
>gi|148989362|ref|ZP_01820730.1| hypothetical protein CGSSp6BS73_07689 [Streptococcus pneumoniae
SP6-BS73]
gi|149020786|ref|ZP_01835315.1| hypothetical protein CGSSp23BS72_02074 [Streptococcus pneumoniae
SP23-BS72]
gi|147925112|gb|EDK76192.1| hypothetical protein CGSSp6BS73_07689 [Streptococcus pneumoniae
SP6-BS73]
gi|147930427|gb|EDK81410.1| hypothetical protein CGSSp23BS72_02074 [Streptococcus pneumoniae
SP23-BS72]
Length = 116
Score = 112 bits (280), Expect = 6e-24, Method: Composition-based stats.
Identities = 77/108 (71%), Positives = 88/108 (81%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFK ++L P FYF +WI+K NR SKFFPIFYYFYW YI Y+LFSLAWTV SVLFFN
Sbjct: 1 MEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYITLYALFSLAWTVFSVLFFN 60
Query: 64 TVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKG 111
VLRN+TDIKLWGIW L +L+A +WL Y FK+M RLR+ELGKSKG
Sbjct: 61 IVLRNLTDIKLWGIWLLLLLIAFASDWLAYVFFKKMIRLRRELGKSKG 108
>gi|15903594|ref|NP_359144.1| hypothetical protein spr1551 [Streptococcus pneumoniae R6]
gi|15459216|gb|AAL00355.1| Hypothetical protein [Streptococcus pneumoniae R6]
Length = 117
Score = 111 bits (278), Expect = 1e-23, Method: Composition-based stats.
Identities = 76/109 (69%), Positives = 89/109 (81%)
Query: 3 VMEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFF 62
+MEHLFK ++L P FYF +WIE+ANR+SK F IFYYFYW YI Y+LFSLAWTV SVLFF
Sbjct: 1 MMEHLFKMIILLPCFYFFSWIERANRDSKIFSIFYYFYWIYITLYALFSLAWTVFSVLFF 60
Query: 63 NTVLRNVTDIKLWGIWFLFILLAIGMNWLTYSCFKEMFRLRQELGKSKG 111
N VLRN+TDIKLWGIW L +L+A +WL Y FK+M RLR+ELGKSKG
Sbjct: 61 NIVLRNLTDIKLWGIWLLLLLIAFASDWLAYVFFKKMIRLRRELGKSKG 109
>gi|149002002|ref|ZP_01826956.1| hypothetical protein CGSSp14BS69_09836 [Streptococcus pneumoniae
SP14-BS69]
gi|147759811|gb|EDK66801.1| hypothetical protein CGSSp14BS69_09836 [Streptococcus pneumoniae
SP14-BS69]
Length = 87
Score = 84.7 bits (208), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/72 (76%), Positives = 61/72 (84%)
Query: 4 MEHLFKFLLLAPYFYFDNWIEKANRNSKFFPIFYYFYWFYIPFYSLFSLAWTVVSVLFFN 63
MEHLFK ++L P FYF +WI+K NR SKFFPIFYYFYW YI Y+LFSLAWTV SVLFFN
Sbjct: 1 MEHLFKMIILLPCFYFFSWIDKDNRESKFFPIFYYFYWIYITLYALFSLAWTVFSVLFFN 60
Query: 64 TVLRNVTDIKLW 75
VLRN+TDIKLW
Sbjct: 61 IVLRNLTDIKLW 72
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.336 0.148 0.520
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,731,809
Number of Sequences: 5470121
Number of extensions: 17179418
Number of successful extensions: 77902
Number of sequences better than 1.0e-05: 14
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77879
Number of HSP's gapped (non-prelim): 14
length of query: 114
length of database: 1,894,087,724
effective HSP length: 82
effective length of query: 32
effective length of database: 1,445,537,802
effective search space: 46257209664
effective search space used: 46257209664
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 124 (52.4 bits)