BLASTP 2.2.18 [Mar-02-2008]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= SPy_0459 hypothetical protein
(117 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
6,515,104 sequences; 2,222,278,849 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_268752.1| hypothetical protein SPy_0459 [Streptococc... 222 7e-57
ref|NP_606721.1| hypothetical protein spyM18_0502 [Streptoc... 221 2e-56
ref|YP_601869.1| Integral membrane protein [Streptococcus p... 220 2e-56
ref|NP_664127.1| hypothetical protein SpyM3_0323 [Streptoco... 219 3e-56
ref|YP_059715.1| Integral membrane protein [Streptococcus p... 219 3e-56
ref|YP_279831.1| integral membrane protein [Streptococcus p... 219 4e-56
ref|NP_688519.1| hypothetical protein SAG1525 [Streptococcu... 101 2e-20
ref|ZP_02921083.1| hypothetical protein STRINF_01967 [Strep... 100 4e-20
ref|YP_140233.1| Conserved hypothetical, predicted membrane... 94 4e-18
ref|ZP_00875679.1| conserved hypothetical protein [Streptoc... 85 2e-15
ref|YP_001198699.1| hypothetical protein SSU05_1333 [Strept... 83 5e-15
ref|NP_721963.1| hypothetical protein SMU.1628 [Streptococc... 82 9e-15
ref|NP_345156.1| hypothetical protein SP_0650 [Streptococcu... 78 2e-13
ref|YP_001835323.1| hypothetical protein SPCG_0606 [Strepto... 77 4e-13
ref|ZP_01827278.1| hypothetical protein CGSSp14BS69_01804 [... 77 5e-13
ref|ZP_01818454.1| hypothetical protein CGSSp3BS71_08486 [S... 77 5e-13
ref|YP_816063.1| hypothetical protein SPD_0564 [Streptococc... 77 5e-13
ref|YP_001694127.1| integral membrane protein [Streptococcu... 77 5e-13
ref|NP_358162.1| hypothetical protein spr0568 [Streptococcu... 77 5e-13
ref|ZP_01824924.1| hypothetical protein CGSSp11BS70_10920 [... 76 6e-13
ref|ZP_01829502.1| hypothetical protein CGSSp18BS74_09360 [... 76 7e-13
ref|ZP_01821965.1| hypothetical protein CGSSp9BS68_06095 [S... 76 7e-13
ref|ZP_02716416.2| integral membrane protein [Streptococcus... 76 7e-13
ref|ZP_02707832.2| conserved hypothetical protein [Streptoc... 76 8e-13
ref|ZP_02712531.2| integral membrane protein [Streptococcus... 76 8e-13
ref|ZP_02711765.1| conserved hypothetical protein [Streptoc... 75 1e-12
ref|ZP_01820420.1| hypothetical protein CGSSp6BS73_02565 [S... 75 2e-12
ref|YP_001450736.1| hypothetical protein SGO_1457 [Streptoc... 71 2e-11
ref|YP_001035562.1| hypothetical protein SSA_1624 [Streptoc... 65 1e-09
ref|YP_001031685.1| hypothetical protein llmg_0331 [Lactoco... 50 4e-05
ref|YP_808385.1| hypothetical protein LACR_0356 [Lactococcu... 50 4e-05
ref|NP_814723.1| lipoprotein, putative [Enterococcus faecal... 47 3e-04
ref|ZP_02184974.1| lipoprotein, putative [Carnobacterium sp... 44 0.003
ref|ZP_00602984.1| lipoprotein, putative [Enterococcus faec... 43 0.008
gb|AAK04412.1|AE006268_8 UNKNOWN PROTEIN [Lactococcus lacti... 41 0.033
ref|NP_266470.2| hypothetical protein L114632 [Lactococcus ... 40 0.041
ref|YP_169616.1| hypothetical membrane protein [Francisella... 34 3.4
gb|EDN36422.1| conserved hypothetical protein [Francisella ... 34 3.6
ref|YP_001122065.1| hypothetical membrane protein [Francise... 33 4.4
ref|YP_001891429.1| hypothetical membrane protein [Francise... 33 4.4
gb|EDN37867.1| conserved hypothetical protein [Francisella ... 33 4.6
ref|YP_513579.1| hypothetical membrane protein [Francisella... 33 4.6
ref|ZP_01065502.1| ATPase involved in chromosome partitioni... 33 6.7
ref|XP_001615251.1| hypothetical protein PVX_091300 [Plasmo... 33 8.4
gb|EBA52453.1| hypothetical membrane protein [Francisella t... 32 9.3
ref|YP_898726.1| hypothetical membrane protein [Francisella... 32 9.9
ref|NP_785699.1| integral membrane protein [Lactobacillus p... 32 9.9
>ref|NP_268752.1| hypothetical protein SPy_0459 [Streptococcus pyogenes M1 GAS]
ref|NP_802796.1| hypothetical protein SPs1534 [Streptococcus pyogenes SSI-1]
ref|YP_281736.1| integral membrane protein [Streptococcus pyogenes MGAS5005]
ref|YP_597986.1| Integral membrane protein [Streptococcus pyogenes MGAS10270]
gb|AAK33473.1| hypothetical protein SPy_0459 [Streptococcus pyogenes M1 GAS]
dbj|BAC64629.1| hypothetical protein [Streptococcus pyogenes SSI-1]
gb|AAZ50991.1| integral membrane protein [Streptococcus pyogenes MGAS5005]
gb|ABF33442.1| Integral membrane protein [Streptococcus pyogenes MGAS10270]
Length = 117
Score = 222 bits (565), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL
Sbjct: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
Query: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA
Sbjct: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
>ref|NP_606721.1| hypothetical protein spyM18_0502 [Streptococcus pyogenes MGAS8232]
gb|AAL97220.1| hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 117
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 117/117 (100%)
Query: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEI+LVSGKFFTHNLL
Sbjct: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEILLVSGKFFTHNLL 60
Query: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA
Sbjct: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
>ref|YP_601869.1| Integral membrane protein [Streptococcus pyogenes MGAS10750]
gb|ABF37325.1| Integral membrane protein [Streptococcus pyogenes MGAS10750]
Length = 117
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGF FPDVALLLFAIEIVLVSGKFFTHNLL
Sbjct: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFNFPDVALLLFAIEIVLVSGKFFTHNLL 60
Query: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA
Sbjct: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
>ref|NP_664127.1| hypothetical protein SpyM3_0323 [Streptococcus pyogenes MGAS315]
gb|AAM78930.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
Length = 116
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 2 MIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLP 61
MIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLP
Sbjct: 1 MIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLP 60
Query: 62 YYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
YYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA
Sbjct: 61 YYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 116
>ref|YP_059715.1| Integral membrane protein [Streptococcus pyogenes MGAS10394]
gb|AAT86532.1| Integral membrane protein [Streptococcus pyogenes MGAS10394]
Length = 117
Score = 219 bits (559), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFF HNLL
Sbjct: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFIHNLL 60
Query: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA
Sbjct: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
>ref|YP_279831.1| integral membrane protein [Streptococcus pyogenes MGAS6180]
ref|YP_596108.1| integral membrane protein [Streptococcus pyogenes MGAS9429]
ref|YP_599990.1| Integral membrane protein [Streptococcus pyogenes MGAS2096]
gb|AAX71476.1| integral membrane protein [Streptococcus pyogenes MGAS6180]
gb|ABF31564.1| integral membrane protein [Streptococcus pyogenes MGAS9429]
gb|ABF35446.1| Integral membrane protein [Streptococcus pyogenes MGAS2096]
Length = 117
Score = 219 bits (559), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/117 (99%), Positives = 116/117 (99%)
Query: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
MMIYKLTALAFLIVTPLFAMIVT LFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL
Sbjct: 1 MMIYKLTALAFLIVTPLFAMIVTPLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
Query: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA
Sbjct: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
>ref|NP_688519.1| hypothetical protein SAG1525 [Streptococcus agalactiae 2603V/R]
ref|NP_736019.1| hypothetical protein gbs1583 [Streptococcus agalactiae NEM316]
gb|AAN00392.1|AE014261_20 conserved hypothetical protein [Streptococcus agalactiae 2603V/R]
emb|CAD47242.1| unknown [Streptococcus agalactiae NEM316]
Length = 117
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Query: 2 MIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLP 61
MIYK+ A FL++ P+F+ ++ +FKL K FPDVA +F I L+S NLLP
Sbjct: 1 MIYKIIASLFLVLIPIFSQVLVKIFKLKKFNIMFPDVAFPIFVFLIPLISSSLLKQNLLP 60
Query: 62 YYLIIMSLLAIVISLLLVIRTQS-FSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
YYLI++SLLAI I++ L +RT++ FSY RF+KLFWR GF++T +FYL L++ IF
Sbjct: 61 YYLILISLLAIGITIKL-LRTKTLFSYKRFLKLFWRSGFILTFLFYLGLLVIIF 113
>ref|ZP_02921083.1| hypothetical protein STRINF_01967 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gb|EDT46962.1| hypothetical protein STRINF_01967 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 115
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 76/115 (66%)
Query: 3 IYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPY 62
+YKL + +F+ +TP+FA I+ F L + G F D+A LFA EI LV KF ++ Y
Sbjct: 1 MYKLFSFSFIFLTPIFAYILVKFFNLKRFGILFTDLAFPLFAFEIALVVNKFLDSSVFFY 60
Query: 63 YLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
YLI +SLLA+ ++ + R SFSY F K FWR GF+VT IFY+I++I +FTLA
Sbjct: 61 YLICLSLLALGLTAFFLKRNHSFSYRCFGKFFWRSGFIVTFIFYIIVLILVFTLA 115
>ref|YP_140233.1| Conserved hypothetical, predicted membrane protein (TMS4)
[Streptococcus thermophilus LMG 18311]
ref|YP_142150.1| hypothetical protein str1819 [Streptococcus thermophilus CNRZ1066]
ref|YP_821126.1| hypothetical protein STER_1799 [Streptococcus thermophilus LMD-9]
gb|AAV61418.1| Conserved hypothetical, predicted membrane protein (TMS4)
[Streptococcus thermophilus LMG 18311]
gb|AAV63335.1| conserved hypothetical protein [Streptococcus thermophilus
CNRZ1066]
gb|ABJ66930.1| Uncharacterized conserved protein [Streptococcus thermophilus
LMD-9]
Length = 117
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 82/117 (70%)
Query: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
M++YK A+AFLI+TP+FA I+ F L G F D+ L+ IE++ +S +FFTH+ L
Sbjct: 1 MVLYKFFAIAFLILTPIFAFIIHRFFSLKYLGLNFADLTFPLYFIEVIAISARFFTHSFL 60
Query: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTLA 117
PY I++SL AI+I++ ++ +TQSF + RF+K FWR+ F +T IFYL VI IF ++
Sbjct: 61 PYITILLSLAAIIITIQMLRKTQSFKFKRFLKFFWRISFFITSIFYLGTVILIFIVS 117
>ref|ZP_00875679.1| conserved hypothetical protein [Streptococcus suis 89/1591]
gb|EAP40152.1| conserved hypothetical protein [Streptococcus suis 89/1591]
Length = 122
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/112 (40%), Positives = 73/112 (65%)
Query: 5 KLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYL 64
K+ A F+ +T ++I F+L +G+ F D+AL L+AIE L+S K + ++LLP +
Sbjct: 9 KIVAFLFIFLTLAISIIAVKFFRLQNRGWNFADIALPLYAIEFYLISDKAYYNSLLPQLV 68
Query: 65 IIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTL 116
+ +SLLAI + +++ ++F Y RF K+FWR F++T + YL LVI +FTL
Sbjct: 69 LALSLLAIGLCGFFLLKKKNFLYRRFFKVFWRASFILTFLMYLALVIAVFTL 120
>ref|YP_001198699.1| hypothetical protein SSU05_1333 [Streptococcus suis 05ZYH33]
ref|YP_001200907.1| hypothetical protein SSU98_1349 [Streptococcus suis 98HAH33]
gb|ABP90299.1| hypothetical protein SSU05_1333 [Streptococcus suis 05ZYH33]
gb|ABP92507.1| hypothetical protein SSU98_1349 [Streptococcus suis 98HAH33]
Length = 122
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 72/112 (64%)
Query: 5 KLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYL 64
K+ A F+ +T ++I F+L +G+ F D+A L+AIE L+S K + ++LLP +
Sbjct: 9 KIVAFLFIFLTLAISIIAVKFFRLQNRGWNFADIAFPLYAIEFYLISDKAYYNSLLPQLV 68
Query: 65 IIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIFTL 116
+ +SLLAI + +++ ++F Y RF K+FWR F++T + YL LVI +FTL
Sbjct: 69 LALSLLAIGLCGFFLLKKKNFLYRRFFKVFWRASFILTFLMYLALVIAVFTL 120
>ref|NP_721963.1| hypothetical protein SMU.1628 [Streptococcus mutans UA159]
gb|AAN59269.1|AE014993_13 conserved hypothetical protein [Streptococcus mutans UA159]
Length = 117
Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 81/114 (71%)
Query: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
M +YKL A+AF+ +T +F+ I+ S F L + G D+AL LFA+EIVLVS KF+TH+ L
Sbjct: 1 MTMYKLMAIAFIFLTLIFSYIIVSTFHLRRFGINLADIALPLFAVEIVLVSAKFYTHSFL 60
Query: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
P+YL+ MS+L++ +++ + + ++FS+ RF K FWR GF++T FYL VI F
Sbjct: 61 PHYLLAMSILSLTLAIRQIRKRKTFSFRRFFKFFWRSGFILTFFFYLATVIAAF 114
>ref|NP_345156.1| hypothetical protein SP_0650 [Streptococcus pneumoniae TIGR4]
gb|AAK74796.1| hypothetical protein SP_0650 [Streptococcus pneumoniae TIGR4]
Length = 106
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 68/103 (66%)
Query: 12 LIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLA 71
+I+T + +I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LA
Sbjct: 1 MILTLVVCIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSILA 60
Query: 72 IVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
I++ +++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 61 IILVFFFLLKKRSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 103
>ref|YP_001835323.1| hypothetical protein SPCG_0606 [Streptococcus pneumoniae CGSP14]
gb|ACB89859.1| hypothetical protein SPCG_0606 [Streptococcus pneumoniae CGSP14]
Length = 106
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 68/103 (66%)
Query: 12 LIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLA 71
+I+T + +I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LA
Sbjct: 1 MILTLVVCIILTKLFRLKKLGRNFADLAFPVLVFEYYLITTKTFTHNFLPRLGLALSILA 60
Query: 72 IVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
I++ +++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 61 IILVFFFLLKKRSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 103
>ref|ZP_01827278.1| hypothetical protein CGSSp14BS69_01804 [Streptococcus pneumoniae
SP14-BS69]
ref|ZP_01835155.1| hypothetical protein CGSSp23BS72_05809 [Streptococcus pneumoniae
SP23-BS72]
gb|EDK66642.1| hypothetical protein CGSSp14BS69_01804 [Streptococcus pneumoniae
SP14-BS69]
gb|EDK81547.1| hypothetical protein CGSSp23BS72_05809 [Streptococcus pneumoniae
SP23-BS72]
Length = 114
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 63/96 (65%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LAI++
Sbjct: 16 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSILAIILVFFF 75
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 76 LLKKRSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 111
>ref|ZP_01818454.1| hypothetical protein CGSSp3BS71_08486 [Streptococcus pneumoniae
SP3-BS71]
gb|EDK73548.1| hypothetical protein CGSSp3BS71_08486 [Streptococcus pneumoniae
SP3-BS71]
Length = 114
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 63/96 (65%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LAI++
Sbjct: 16 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLTLSILAIILVFFF 75
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 76 LLKKRSFYYPKFIKFFWRAGFLLTLIMYVEMIVELF 111
>ref|YP_816063.1| hypothetical protein SPD_0564 [Streptococcus pneumoniae D39]
gb|ABJ54613.1| conserved hypothetical protein [Streptococcus pneumoniae D39]
Length = 117
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 63/96 (65%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LAI++
Sbjct: 19 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSILAIILVFFF 78
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 79 LLKKRSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 114
>ref|YP_001694127.1| integral membrane protein [Streptococcus pneumoniae Hungary19A-6]
gb|ACA36351.1| integral membrane protein [Streptococcus pneumoniae Hungary19A-6]
Length = 119
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 63/96 (65%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LAI++
Sbjct: 21 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLTLSILAIILVFFF 80
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 81 LLKKRSFYYPKFIKFFWRAGFLLTLIMYVEMIVELF 116
>ref|NP_358162.1| hypothetical protein spr0568 [Streptococcus pneumoniae R6]
ref|ZP_01408444.1| hypothetical protein SpneT_02001091 [Streptococcus pneumoniae
TIGR4]
gb|AAK99372.1| Hypothetical protein [Streptococcus pneumoniae R6]
Length = 119
Score = 76.6 bits (187), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 63/96 (65%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LAI++
Sbjct: 21 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSILAIILVFFF 80
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 81 LLKKRSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 116
>ref|ZP_01824924.1| hypothetical protein CGSSp11BS70_10920 [Streptococcus pneumoniae
SP11-BS70]
ref|ZP_02721258.2| integral membrane protein [Streptococcus pneumoniae MLV-016]
gb|EDK64010.1| hypothetical protein CGSSp11BS70_10920 [Streptococcus pneumoniae
SP11-BS70]
gb|EDT99018.1| integral membrane protein [Streptococcus pneumoniae MLV-016]
Length = 119
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 63/96 (65%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LAI++
Sbjct: 21 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSILAIILVFFF 80
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 81 LLKKRSFYYPKFIKFFWRAGFLLTLIMYVEMIVELF 116
>ref|ZP_01829502.1| hypothetical protein CGSSp18BS74_09360 [Streptococcus pneumoniae
SP18-BS74]
ref|ZP_01832100.1| hypothetical protein CGSSp19BS75_05222 [Streptococcus pneumoniae
SP19-BS75]
gb|EDK69663.1| hypothetical protein CGSSp18BS74_09360 [Streptococcus pneumoniae
SP18-BS74]
gb|EDK72139.1| hypothetical protein CGSSp19BS75_05222 [Streptococcus pneumoniae
SP19-BS75]
Length = 114
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S LAI++
Sbjct: 16 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSFLAIILVFFF 75
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 76 LLKKRSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 111
>ref|ZP_01821965.1| hypothetical protein CGSSp9BS68_06095 [Streptococcus pneumoniae
SP9-BS68]
gb|EDK79880.1| hypothetical protein CGSSp9BS68_06095 [Streptococcus pneumoniae
SP9-BS68]
Length = 114
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S LAI++
Sbjct: 16 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSFLAIILVFFF 75
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 76 LLKKRSFYYPKFIKFFWRTGFLLTLIMYIEMIVELF 111
>ref|ZP_02716416.2| integral membrane protein [Streptococcus pneumoniae CDC0288-04]
gb|EDT94047.1| integral membrane protein [Streptococcus pneumoniae CDC0288-04]
Length = 119
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 63/96 (65%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S+LAI++
Sbjct: 21 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSILAIILVFFF 80
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T++ Y+ +++ +F
Sbjct: 81 LLKKRSFYYPKFIKFFWRTGFLLTLVMYIEMIVELF 116
>ref|ZP_02707832.2| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
gb|EDT51634.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1873-00]
Length = 119
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S LAI++
Sbjct: 21 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSFLAIILVFFF 80
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 81 LLKKRSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 116
>ref|ZP_02712531.2| integral membrane protein [Streptococcus pneumoniae SP195]
ref|ZP_02716952.2| integral membrane protein [Streptococcus pneumoniae CDC3059-06]
gb|EDT93667.1| integral membrane protein [Streptococcus pneumoniae SP195]
gb|EDT97567.1| integral membrane protein [Streptococcus pneumoniae CDC3059-06]
Length = 119
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S LAI++
Sbjct: 21 CIILTKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSFLAIILVFFF 80
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 81 LLKKRSFYYPKFIKFFWRTGFLLTLIMYIEMIVELF 116
>ref|ZP_02711765.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
gb|EDT90386.1| conserved hypothetical protein [Streptococcus pneumoniae
CDC1087-00]
Length = 119
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 62/96 (64%)
Query: 19 AMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+I+T LF+L K G F D+A + E L++ K FTHN LP + +S LAI++
Sbjct: 21 CIILTKLFRLKKLGRNFADLAFPVLIFEYYLITAKTFTHNFLPRLGLALSFLAIILVFFF 80
Query: 79 VIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+++ +SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 81 LLKKRSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 116
>ref|ZP_01820420.1| hypothetical protein CGSSp6BS73_02565 [Streptococcus pneumoniae
SP6-BS73]
gb|EDK76594.1| hypothetical protein CGSSp6BS73_02565 [Streptococcus pneumoniae
SP6-BS73]
Length = 114
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 60/92 (65%)
Query: 23 TSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLLVIRT 82
T LF+L K G F D+A + E L++ K FTHN LP + +S+LAI++ +++
Sbjct: 20 TKLFRLKKLGRNFADLAFPVLVFEYYLITAKTFTHNFLPRLGLALSILAIILVFFFLLKK 79
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
+SF Y +F+K FWR GFL+T+I Y+ +++ +F
Sbjct: 80 RSFYYPKFIKFFWRAGFLLTLIMYIEMIVELF 111
>ref|YP_001450736.1| hypothetical protein SGO_1457 [Streptococcus gordonii str. Challis
substr. CH1]
gb|ABV10448.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 116
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 71/113 (62%)
Query: 2 MIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLP 61
M+ ++ A+ F+ +T ++I+ +L + G F D+A +F +E ++S + + H++LP
Sbjct: 1 MLLRIAAVLFIFLTIALSIILIKFLRLKRFGLNFADLAFPMFFLEFYIISDRAYYHSMLP 60
Query: 62 YYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
++ +S LAI I++ + + Q+F Y +F+K FWR GF++T YL +VI +F
Sbjct: 61 QLVLALSALAIGITVYFLKKKQTFYYPKFLKFFWRAGFMLTFFLYLAMVIGLF 113
>ref|YP_001035562.1| hypothetical protein SSA_1624 [Streptococcus sanguinis SK36]
gb|ABN45012.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 115
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 70/114 (61%)
Query: 1 MMIYKLTALAFLIVTPLFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLL 60
M + K+ ++ F+ +T + I +F+L K G F D+A LF +E ++S K + H+LL
Sbjct: 1 MTLLKIASILFIFLTLILTTITVRVFQLRKYGLNFADLAFPLFVVEFYIISDKAYYHSLL 60
Query: 61 PYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFIF 114
P + +S+LAI I++ + + +SF Y +F K FWR GFL+T YL +VI +F
Sbjct: 61 PQLTLALSVLAIAITIYFLKKKRSFYYPKFFKFFWRAGFLLTFFMYLAMVIGLF 114
>ref|YP_001031685.1| hypothetical protein llmg_0331 [Lactococcus lactis subsp. cremoris
MG1363]
emb|CAL96937.1| putative membrane protein [Lactococcus lactis subsp. cremoris
MG1363]
Length = 118
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 57/88 (64%)
Query: 28 LNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLLVIRTQSFSY 87
L + K PDV L + + + S + +++PYYL+I+S LA+++ LL + + F+Y
Sbjct: 30 LTNRKLKIPDVFTLFLILGMQIFSKNVTSISIIPYYLLIISGLALILLLLDLFYYKQFAY 89
Query: 88 HRFMKLFWRVGFLVTVIFYLILVIFIFT 115
RF+KL+WR+ F +T+I YLILV+ FT
Sbjct: 90 RRFLKLWWRLTFFITLIIYLILVVMTFT 117
>ref|YP_808385.1| hypothetical protein LACR_0356 [Lactococcus lactis subsp. cremoris
SK11]
gb|ABJ71963.1| hypothetical protein LACR_0356 [Lactococcus lactis subsp. cremoris
SK11]
Length = 112
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 57/88 (64%)
Query: 28 LNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLLVIRTQSFSY 87
L + K PDV L + + + S + +++PYYL+I+S LA+++ LL + + F+Y
Sbjct: 24 LTNRKLKIPDVFTLFLILGMQIFSKNVTSISIIPYYLLIISGLALILLLLDLFYYKQFAY 83
Query: 88 HRFMKLFWRVGFLVTVIFYLILVIFIFT 115
RF+KL+WR+ F +T+I YLILV+ FT
Sbjct: 84 RRFLKLWWRLTFFITLIIYLILVVMTFT 111
>ref|NP_814723.1| lipoprotein, putative [Enterococcus faecalis V583]
gb|AAO80793.1| lipoprotein, putative [Enterococcus faecalis V583]
Length = 130
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 24 SLFKLNKK-GFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLLVIRT 82
S F L ++ K PD+A+ I I +S + +++PY++I + LL + ++L
Sbjct: 34 STFSLTERWKIKAPDLAIPFLFIGIHELSKDSYDESIMPYFVISILLLGVAVALFQAYYY 93
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVI 111
Y R+ K+FWR+ FL+T + Y++L++
Sbjct: 94 GEILYRRYFKMFWRLTFLLTFVLYVLLIL 122
>ref|ZP_02184974.1| lipoprotein, putative [Carnobacterium sp. AT7]
gb|EDP68223.1| lipoprotein, putative [Carnobacterium sp. AT7]
Length = 124
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 17 LFAMIVTSLFKLNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISL 76
LF+ + FK K PD+ + + I ++S + +LLPY+LI + L I+I L
Sbjct: 24 LFSKAIQRHFKKQNSAIKLPDLLVPFLIVGIHILSELTYDFSLLPYFLIFIFSLGIIILL 83
Query: 77 LLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLILVI 111
+ ++ Y F K +WR F+ ++ Y LV+
Sbjct: 84 SIAVKKGEILYKSFFKTYWRFVFISAIVVYYGLVV 118
>ref|ZP_00602984.1| lipoprotein, putative [Enterococcus faecium DO]
gb|EAN10740.1| lipoprotein, putative [Enterococcus faecium DO]
Length = 122
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 24 SLFKLNKK-GFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLLVIRT 82
LF LN++ K PD+A+ + +S T ++LP++ I + L+ I I++
Sbjct: 27 KLFSLNRRFKIKAPDLAIPFLWGGMHALSRNTGTISILPFFFISVLLMGICIAVFQAYYY 86
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVI 111
+ Y R+ K+ WR+ FL+T++ Y +L+I
Sbjct: 87 EEIIYPRYFKMTWRLVFLLTIVLYAVLII 115
>gb|AAK04412.1|AE006268_8 UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis Il1403]
Length = 118
Score = 40.8 bits (94), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 28 LNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLLVIRTQSFSY 87
L + K PDV + + + + S + +++PYYL+I+S LA+V+ LL ++ + F+Y
Sbjct: 30 LTNRKLKIPDVFTIFLILGMQIFSKNVTSISIIPYYLLIISGLALVLLLLDLLYYKQFTY 89
Query: 88 HRFMKLFWRVGF 99
RF+KL+WR+ F
Sbjct: 90 RRFLKLWWRLTF 101
>ref|NP_266470.2| hypothetical protein L114632 [Lactococcus lactis subsp. lactis
Il1403]
Length = 112
Score = 40.4 bits (93), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 46/72 (63%)
Query: 28 LNKKGFKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLLVIRTQSFSY 87
L + K PDV + + + + S + +++PYYL+I+S LA+V+ LL ++ + F+Y
Sbjct: 24 LTNRKLKIPDVFTIFLILGMQIFSKNVTSISIIPYYLLIISGLALVLLLLDLLYYKQFTY 83
Query: 88 HRFMKLFWRVGF 99
RF+KL+WR+ F
Sbjct: 84 RRFLKLWWRLTF 95
>ref|YP_169616.1| hypothetical membrane protein [Francisella tularensis subsp.
tularensis SCHU S4]
ref|YP_666748.1| hypothetical membrane protein [Francisella tularensis subsp.
tularensis FSC198]
emb|CAG45226.1| hypothetical membrane protein [Francisella tularensis subsp.
tularensis SCHU S4]
emb|CAL08609.1| hypothetical membrane protein [Francisella tularensis subsp.
tularensis FSC 198]
gb|EDN34124.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
Length = 201
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 31 KGFKFPDVALLLFAIEIVLVSGKFFTHN-----------LLPYYLIIMSLLAIVISLLLV 79
+ KF A L + I++ S FF +N YY I +++L ++ISL L
Sbjct: 21 RSSKFSKDAWLFYITSIIIGSSTFFLYNNFSIINYFYSLEAEYYNIAIAVLGLIISLCLT 80
Query: 80 IRTQSFSYHRFMKLFWRVGFLVTVIFYLILVIFI 113
I+T+S S + K++ + LV + +++L IFI
Sbjct: 81 IKTKSIS--EYNKVYISLFLLVIISSFVLLTIFI 112
>gb|EDN36422.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3549]
Length = 201
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 34 KFPDVALLLFAIEIVLVSGKFFTHN-----------LLPYYLIIMSLLAIVISLLLVIRT 82
KF A L + I++ S FF +N YY I +++L ++ISL L I+T
Sbjct: 24 KFSKDAWLFYITSIIIGSSTFFLYNNFSIINYFYSLEAEYYNIAIAVLGLIISLCLTIKT 83
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVIFI 113
+S S + K++ + LV + +++L IFI
Sbjct: 84 KSIS--EYNKVYISLFLLVIISIFVLLTIFI 112
>ref|YP_001122065.1| hypothetical membrane protein [Francisella tularensis subsp.
tularensis WY96-3418]
gb|ABO46944.1| hypothetical membrane protein [Francisella tularensis subsp.
tularensis WY96-3418]
Length = 201
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 34 KFPDVALLLFAIEIVLVSGKFFTHN-----------LLPYYLIIMSLLAIVISLLLVIRT 82
KF A L + I++ S FF +N YY I +++L ++ISL L I+T
Sbjct: 24 KFSKDAWLFYITSIIIGSSTFFLYNNFSIINYFYSLEAEYYNIAIAVLGLIISLCLTIKT 83
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVIFI 113
+S S + K++ + LV + +++L IFI
Sbjct: 84 KSIS--EYNKVYISLFLLVIISSFVLLTIFI 112
>ref|YP_001891429.1| hypothetical membrane protein [Francisella tularensis subsp.
mediasiatica FSC147]
gb|ACD30651.1| hypothetical membrane protein [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 201
Score = 33.5 bits (75), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 34 KFPDVALLLFAIEIVLVSGKFFTHN-----------LLPYYLIIMSLLAIVISLLLVIRT 82
KF A L + I++ S FF +N YY I +++L ++ISL L I+T
Sbjct: 24 KFSKDAWLFYITSIIIGSSTFFLYNNFSIINYFYSLEAEYYNIAIAVLGLIISLCLTIKT 83
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVIFI 113
+S S + K++ + LV + +++L IFI
Sbjct: 84 KSIS--EYNKVYISLFLLVIISSFVLLTIFI 112
>gb|EDN37867.1| conserved hypothetical protein [Francisella tularensis subsp.
novicida GA99-3548]
Length = 201
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 34 KFPDVALLLFAIEIVLVSGKFFTHN-----------LLPYYLIIMSLLAIVISLLLVIRT 82
KF A L + I++ S FF +N YY I +++L ++ISL L I+T
Sbjct: 24 KFSKDAWLFYITSIIIGSSTFFLYNNFSIINYFYSLEAEYYNIAIAVLGLIISLCLTIKT 83
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVIFI 113
+S S + K++ + LV + +++L IFI
Sbjct: 84 KSIS--EYNKVYISLFLLVIISSFVLLTIFI 112
>ref|YP_513579.1| hypothetical membrane protein [Francisella tularensis subsp.
holarctica]
ref|YP_763407.1| hypothetical protein FTH_0846 [Francisella tularensis subsp.
holarctica OSU18]
ref|YP_001428341.1| hypothetical membrane protein [Francisella tularensis subsp.
holarctica FTNF002-00]
ref|ZP_02274677.1| hypothetical membrane protein [Francisella tularensis subsp.
holarctica FSC200]
emb|CAJ79296.1| hypothetical membrane protein [Francisella tularensis subsp.
holarctica LVS]
gb|ABI82770.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica OSU18]
gb|ABU61385.1| hypothetical membrane protein [Francisella tularensis subsp.
holarctica FTNF002-00]
gb|EDO66301.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica FSC022]
Length = 201
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 34 KFPDVALLLFAIEIVLVSGKFFTHN-----------LLPYYLIIMSLLAIVISLLLVIRT 82
KF A L + I++ S FF +N YY I +++L ++ISL L I+T
Sbjct: 24 KFSKDAWLFYITSIIIGSSTFFLYNNFSIINYFYSLEAEYYNIAIAVLGLIISLCLTIKT 83
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVIFI 113
+S S + K++ + LV + +++L IFI
Sbjct: 84 KSIS--EYNKVYISLFLLVIISSFVLLTIFI 112
>ref|ZP_01065502.1| ATPase involved in chromosome partitioning [Vibrio sp. MED222]
gb|EAQ53212.1| ATPase involved in chromosome partitioning [Vibrio sp. MED222]
Length = 407
Score = 33.1 bits (74), Expect = 6.7, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 34 KFPDVALLLFAI---EIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLLVIRTQSFSYHRF 90
++PDV ++ + + ++ + TH L P+ +I+ IS++ +R F Y
Sbjct: 62 QYPDVEVVFVELNQSQDIVADAQLLTHTLPPHVSVIIIGSEDTISIIRALRQLGFYY--- 118
Query: 91 MKLFWRVGFLVTVIFY 106
LFW G T+ FY
Sbjct: 119 --LFWPAGEAETIDFY 132
>ref|XP_001615251.1| hypothetical protein PVX_091300 [Plasmodium vivax SaI-1]
gb|EDL45524.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 5635
Score = 32.7 bits (73), Expect = 8.4, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 33 FKFPDVALLLFAIEIVLVSGKFFTHNLLPYYLIIMSLLAIVISLLL 78
+K+ D + + F+I+I++ +G+ F +LP Y I M++L+I+ + L+
Sbjct: 2383 YKYQDDSAMKFSIQILVQNGEMFL--ILPTYFIHMNILSIITNTLI 2426
>gb|EBA52453.1| hypothetical membrane protein [Francisella tularensis subsp.
holarctica 257]
Length = 201
Score = 32.3 bits (72), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 34 KFPDVALLLFAIEIVLVSGKFFTHN-----------LLPYYLIIMSLLAIVISLLLVIRT 82
KF A L + I++ S FF +N YY I +++L ++ISL L I+T
Sbjct: 24 KFSKDAWLFYIPSIIIGSSTFFLYNNFSIINYFYSLEAEYYNIAIAVLGLIISLCLTIKT 83
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVIFI 113
+S S + K++ + LV + +++L IFI
Sbjct: 84 KSIS--EYNKVYISLFLLVIISSFVLLTIFI 112
>ref|YP_898726.1| hypothetical membrane protein [Francisella tularensis subsp.
novicida U112]
gb|ABK89972.1| hypothetical membrane protein [Francisella tularensis subsp.
novicida U112]
Length = 201
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 13/90 (14%)
Query: 34 KFPDVALLLFAIEIVLVSGKFFTHN-----------LLPYYLIIMSLLAIVISLLLVIRT 82
KF A L + I++ S FF +N YY I +++L ++ISL L I+T
Sbjct: 24 KFSKDAWLFYITSIIIGSSTFFLYNNFSIINYSYSLEAEYYNIAIAVLGLIISLCLTIKT 83
Query: 83 QSFSYHRFMKLFWRVGFLVTVIFYLILVIF 112
+S S + K++ + LV + +++L IF
Sbjct: 84 KSIS--EYNKVYISLFLLVIISSFVLLTIF 111
>ref|NP_785699.1| integral membrane protein [Lactobacillus plantarum WCFS1]
emb|CAD64550.1| integral membrane protein [Lactobacillus plantarum WCFS1]
Length = 122
Score = 32.3 bits (72), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 58 NLLPYYLIIMSLLAIVISLLLVIRTQSFSYHRFMKLFWRVGFLVTVIFYLI 108
+L PY ++ + +L I ++L+ + Y RF KL WR L+T++ Y++
Sbjct: 62 SLAPYEVLSLMILGIGLTLIEAVERGEILYWRFFKLCWRGAELLTLVVYIL 112
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
Posted date: May 10, 2008 4:54 AM
Number of letters in database: 2,222,278,849
Number of sequences in database: 6,515,104
Lambda K H
0.343 0.154 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 6515104
Number of Hits to DB: 395,418,564
Number of extensions: 12922591
Number of successful extensions: 116178
Number of sequences better than 10.0: 225
Number of HSP's gapped: 119785
Number of HSP's successfully gapped: 226
Length of query: 117
Length of database: 2,222,278,849
Length adjustment: 84
Effective length of query: 33
Effective length of database: 1,675,010,113
Effective search space: 55275333729
Effective search space used: 55275333729
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 73 (32.7 bits)