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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract 






processing output:
cycle 1
cycle 2
cycle 3
cycle 4

Repeat sequence:
   SW  perc perc perc  query               position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence            begin  end (left)    repeat   class/family  begin  end (left)  ID

  288   0.0  0.0  0.0  SSH6H04.SEQ(1>293)    232  263    (6) +  (A)n     Simple_repeat     1   32    (0)      



Alignments:
288  0.00  0.00  0.00  SSH6H04.SEQ(1>293)  232  263  (6)  (A)n#Simple_repeat  1  32  (148)  5

  SSH6H04.SEQ(1>2    232 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 263    
                                                         
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 32

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 32), avg. gap size = 0.00 (0 / 0)  



Masked Sequence:
>SSH6H04.SEQ(1>293)
RSACTATTGAAGATAAGAAGGGATGGATTGTCGAAGTTGATTAACAACGC
GTGTTTATAATTTATAATTGTTTATTCCAATGTTATTAAACCAATTTTAA
ACTGTAATAATGATTGCCCATACGAAAAATGGGCGCATATACTGTTGTTC
GTTATCTAAAAGCATGTTATATGTGTAAAATGTTTTTTTTTGGATACATA
TATATGTAAAATGATGTGCACGTTATAAATTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNGCTTGT



Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       269 bp
GC level:         25.00 %
bases masked:        32 bp ( 11.90 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           32 bp    11.90 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000




Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.


Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.


Query=  SSH6H04.SEQ(1>293)
        (269 letters)

  Translating both strands of query sequence in all 6 reading frames


Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 6 Sequences     : less than 6 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1635 344 |=========================================================
   6310 1291 208 |==================================
   3980 1083 181 |==============================
   2510  902 365 |============================================================
   1580  537 135 |======================
   1000  402  96 |================
    631  306  65 |==========
    398  241  34 |=====
    251  207  22 |===
    158  185  20 |===
    100  165  38 |======
   63.1  127  23 |===
   39.8  104  37 |======
   25.1   67  10 |=
   15.8   57  20 |===
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 37  <<<<<<<<<<<<<<<<<
   10.0   37   5 |:
   6.31   32   6 |=
   3.98   26  15 |==
   2.51   11   2 |:
   1.58    9   4 |:
   1.00    5   1 |:
   0.63    4   1 |:
   0.40    3   3 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|6684026|gb|AAF23434.1|(AF208264) cytochrome oxidas... -3    57  0.23      2
gi|6684029|gb|AAF23437.1|(AF208267) cytochrome oxidas... -3    57  0.23      2
gi|6684049|gb|AAF23457.1|(AF208287) cytochrome oxidas... -3    57  0.23      2
gi|2213726|gb|AAB61552.1|(U83780) cytochrome oxidase ... -3    57  0.44      2
gi|6323963ref|NP_014034.1| Ymr304c-ap >gi|2131851|pir... -1    64  0.63      1
gi|461783|sp|P34188|COX1_CROLACYTOCHROME C OXIDASE PO... -3    61  0.64      2
gi|2213675|gb|AAB61540.1|(U83781) cytochrome oxidase ... -3    57  0.70      2
gi|2213732|gb|AAB61554.1|(U83783) cytochrome oxidase ... -3    57  0.70      2
gi|2213744|gb|AAB61556.1|(U83779) cytochrome oxidase ... -3    57  0.70      2
gi|7427819|pir||ODXL1cytochrome-c oxidase (EC 1.9.3.1... -3    59  0.88      2
gi|117002|sp|P00398|COX1_XENLACYTOCHROME C OXIDASE PO... -3    59  0.88      2
gi|5921838|sp|O79429|COX1_RABITCYTOCHROME C OXIDASE P... -3    57  0.93      2
gi|4239865|dbj|BAA74722.1|(AB016733) cytochrome C oxi... -3    57  0.93      2
gi|116974|sp|P24985|COX1_CYPCACYTOCHROME C OXIDASE PO... -3    57  0.93      2
gi|2493818|sp|Q36775|COX1_GADMOCYTOCHROME C OXIDASE P... -3    57  0.93      2
gi|6647485|sp|O78681|COX1_CARAUCYTOCHROME C OXIDASE P... -3    57  0.93      2
gi|7262869|gb|AAF44002.1|AF168061_1(AF168061) cytochr... -3    56  0.94      2
gi|6685362|sp|Q9ZXY2|COX1_PAPHACYTOCHROME C OXIDASE P... -3    56  0.96      2
gi|6045114|dbj|BAA85287.1|(D38115) cytochrome c oxida... -3    56  0.96      2
gi|5835795|gnl|NCBI_MITO|COX1_15064cytochrome c oxida... -3    56  0.96      2
gi|6851068|emb|CAB71161.1|(Y19192) cytochrome oxidase... -3    56  0.96      2
gi|5103711|dbj|BAA79212.1|(AB016606) cytochrome oxida... -3    56  0.96      2
gi|1352137|sp|P48170|COX1_ONCMYCYTOCHROME C OXIDASE P... -3    56  0.96      2
gi|6647504|sp|Q9ZZM6|COX1_SALSACYTOCHROME C OXIDASE P... -3    56  0.96      2
gi|5257512|gb|AAD41374.1|AF154850_3(AF154850) cytochr... -3    56  0.96      2
gi|7460701|pir||T41861AcMNPV orf124 - Bombyx mori nuc... +3    65  0.97      1
gi|7514680|pir||T10988cytochrome-c oxidase (EC 1.9.3.... -3    56  0.98      2
gi|5103691|dbj|BAA79199.1|(AB012104) cytochrome oxida... -3    56  0.98      2
gi|7296939|gb|AAF52212.1|(AE003608) CG14036 gene prod... +1    58  0.99      1
gi|3395483|emb|CAA08919.1|(AJ009963) farnesyl pyropho... -1    66  0.995     1
gi|4689332|gb|AAD27853.1|AF132554_1(AF132554) farnesy... -1    66  0.998     1
gi|6323825ref|NP_013896.1| Ymr172c-ap >gi|2131843|pir... +1    58  0.998     1
gi|2493184|sp|O10300|VP47_NPVOPVIRAL TRANSCRIPTION RE... -3    65  0.9993    1
gi|939934|emb|CAA53969.1|(X76367) cytochrome c oxidas... -3    53  0.9995    2
gi|7595885|gb|AAF64483.1|(AF241374) cytochrome oxidas... -3    54  0.9995    2
gi|6224997|sp|Q9ZE38|ACKA_RICPRACETATE KINASE (ACETOK... -1    64  0.9999    1
gi|7595887|gb|AAF64484.1|(AF241375) cytochrome oxidas... -3    54  0.99993   2



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|7460701             |                       ___________                
                        __________________________________________________
Query sequence:        |          |          |          |          |      | 90
                       0         20         40         60         80


Locus_ID                Frame 1 Hits
gi|7296939             |                     ____________                 
gi|6323825             |                               ___________        
                        __________________________________________________
Query sequence:        |          |          |          |          |      | 90
                       0         20         40         60         80


Locus_ID                Frame -1 Hits
gi|6684026             |                                   ________       
gi|6684029             |                                   ________       
gi|6684049             |                                   ________       
gi|2213726             |                                   ________       
gi|6323963             |                  ________________________        
gi|461783              |                                   ________       
gi|2213675             |                                   ________       
gi|2213732             |                                   ________       
gi|2213744             |                                   ________       
gi|7427819             |                                   ________       
gi|117002              |                                   ________       
gi|5921838             |                                   ________       
gi|4239865             |                                   ________       
gi|116974              |                                   ________       
gi|2493818             |                                   ________       
gi|6647485             |                                   ________       
gi|7262869             |                                   ________       
gi|6685362             |                                   ________       
gi|6045114             |                                   ________       
gi|5835795             |                                   ________       
gi|6851068             |                                   ________       
gi|5103711             |                                   ________       
gi|1352137             |                                   ________       
gi|6647504             |                                   ________       
gi|5257512             |                                   ________       
gi|7514680             |                                   ________       
gi|5103691             |                                   ________       
gi|3395483             |      ________________________________            
gi|4689332             |      ________________________________            
gi|939934              |                                   ________       
gi|7595885             |                                   ________       
gi|6224997             |               ___________________________        
gi|7595887             |                                   ________       
                        __________________________________________________
Query sequence:        |          |          |          |          |      | 90
                       0         20         40         60         80


Locus_ID                Frame -3 Hits
gi|6684026             |                  _________                       
gi|6684029             |                  _________                       
gi|6684049             |                  _________                       
gi|2213726             |                  _____________                   
gi|461783              |                  ______________                  
gi|2213675             |                  _____________                   
gi|2213732             |                  _____________                   
gi|2213744             |                  _____________                   
gi|7427819             |                  ______________                  
gi|117002              |                  ______________                  
gi|5921838             |                  _____________                   
gi|4239865             |                  _____________                   
gi|116974              |                  ______________                  
gi|2493818             |                  _________                       
gi|6647485             |                  ______________                  
gi|7262869             |                  _____________                   
gi|6685362             |                  _____________                   
gi|6045114             |                  _____________                   
gi|5835795             |                  _____________                   
gi|6851068             |                  _____________                   
gi|5103711             |                  _____________                   
gi|1352137             |                  _________                       
gi|6647504             |                  _________                       
gi|5257512             |                  _________                       
gi|7514680             |                  _____________                   
gi|5103691             |                  _____________                   
gi|2493184             |          _______________________________         
gi|939934              |                  _________                       
gi|7595885             |                  ______________                  
gi|7595887             |                  ______________                  
                        __________________________________________________
Query sequence:        |          |          |          |          |      | 90
                       0         20         40         60         80




Use the  and  icons to retrieve links to Entrez:

E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).

R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.



to_Entrezto_Relatedto_Related >gi|6684026|gb|AAF23434.1|  (AF208264) cytochrome oxidase I [Fundulus zebrinus]
            >gi|6684027|gb|AAF23435.1| (AF208265) cytochrome oxidase I
            [Fundulus zebrinus] >gi|6684028|gb|AAF23436.1| (AF208266)
            cytochrome oxidase I [Fundulus zebrinus] >gi|6684030|gb|AAF23438.1|
            (AF208268) cytochrome oxidase I [Fundulus zebrinus]
            >gi|6684031|gb|AAF23439.1| (AF208269) cytochrome oxidase I
            [Fundulus zebrinus] >gi|6684032|gb|AAF23440.1| (AF208270)
            cytochrome oxidase I [Fundulus zebrinus] >gi|6684033|gb|AAF23441.1|
            (AF208271) cytochrome oxidase I [Fundulus zebrinus]
            >gi|6684034|gb|AAF23442.1| (AF208272) cytochrome oxidase I
            [Fundulus zebrinus] >gi|6684035|gb|AAF23443.1| (AF208273)
            cytochrome oxidase I [Fundulus zebrinus] >gi|6684036|gb|AAF23444.1|
            (AF208274) cytochrome oxidase I [Fundulus zebrinus]
            >gi|6684037|gb|AAF23445.1| (AF208275) cytochrome oxidase I
            [Fundulus zebrinus] >gi|6684038|gb|AAF23446.1| (AF208276)
            cytochrome oxidase I [Fundulus zebrinus] >gi|6684039|gb|AAF23447.1|
            (AF208277) cytochrome oxidase I [Fundulus zebrinus]
            >gi|6684040|gb|AAF23448.1| (AF208278) cytochrome oxidase I
            [Fundulus zebrinus] >gi|6684041|gb|AAF23449.1| (AF208279)
            cytochrome oxidase I [Fundulus zebrinus] >gi|6684042|gb|AAF23450.1|
            (AF208280) cytochrome oxidase I [Fundulus zebrinus]
            >gi|6684043|gb|AAF23451.1| (AF208281) cytochrome oxidase I
            [Fundulus zebrinus] >gi|6684044|gb|AAF23452.1| (AF208282)
            cytochrome oxidase I [Fundulus zebrinus] >gi|6684045|gb|AAF23453.1|
            (AF208283) cytochrome oxidase I [Fundulus zebrinus]
            >gi|6684046|gb|AAF23454.1| (AF208284) cytochrome oxidase I
            [Fundulus zebrinus] >gi|6684047|gb|AAF23455.1| (AF208285)
            cytochrome oxidase I [Fundulus zebrinus] >gi|6684048|gb|AAF23456.1|
            (AF208286) cytochrome oxidase I [Fundulus zebrinus]
            Length = 206

Frame -1 hits (HSPs):           ___                                       
Frame -3 hits (HSPs):                                         ____        
                        __________________________________________________
Database sequence:     |           |            |           |           | | 206
                       0          50          100         150         200

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 0.26, Sum P(2) = 0.23
 Identities = 9/14 (64%), Positives = 11/14 (78%), Frame = -3

Query:   144 QYMRPFFVWAIIIT 103
             QY  P FVWA++IT
Sbjct:   159 QYQTPLFVWAVLIT 172

 Score = 33 (11.6 bits), Expect = 0.26, Sum P(2) = 0.23
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    34 IYNVIVTAHAFV 45


to_Entrezto_Relatedto_Related >gi|6684029|gb|AAF23437.1|  (AF208267) cytochrome oxidase I [Fundulus zebrinus]
            Length = 206

Frame -1 hits (HSPs):           ___                                       
Frame -3 hits (HSPs):                                         ____        
                        __________________________________________________
Database sequence:     |           |            |           |           | | 206
                       0          50          100         150         200

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 0.26, Sum P(2) = 0.23
 Identities = 9/14 (64%), Positives = 11/14 (78%), Frame = -3

Query:   144 QYMRPFFVWAIIIT 103
             QY  P FVWA++IT
Sbjct:   159 QYQTPLFVWAVLIT 172

 Score = 33 (11.6 bits), Expect = 0.26, Sum P(2) = 0.23
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    34 IYNVIVTAHAFV 45


to_Entrezto_Relatedto_Related >gi|6684049|gb|AAF23457.1|  (AF208287) cytochrome oxidase I [Fundulus catenatus]
            Length = 206

Frame -1 hits (HSPs):           ___                                       
Frame -3 hits (HSPs):                                         ____        
                        __________________________________________________
Database sequence:     |           |            |           |           | | 206
                       0          50          100         150         200

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 0.26, Sum P(2) = 0.23
 Identities = 9/14 (64%), Positives = 11/14 (78%), Frame = -3

Query:   144 QYMRPFFVWAIIIT 103
             QY  P FVWA++IT
Sbjct:   159 QYQTPLFVWAVLIT 172

 Score = 33 (11.6 bits), Expect = 0.26, Sum P(2) = 0.23
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    34 IYNVIVTAHAFV 45


to_Entrezto_Relatedto_Related >gi|2213726|gb|AAB61552.1|  (U83780) cytochrome oxidase I [Mimizuku gurneyi]
            Length = 273

Frame -1 hits (HSPs):         ___                                         
Frame -3 hits (HSPs):                               _____                 
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 273
                       0       50       100      150      200      250

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 0.57, Sum P(2) = 0.44
 Identities = 10/22 (45%), Positives = 14/22 (63%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM   +  QY  P FVW+++IT
Sbjct:   156 NMKPPSLSQYQTPLFVWSVLIT 177

 Score = 33 (11.6 bits), Expect = 0.57, Sum P(2) = 0.44
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    39 IYNVIVTAHAFV 50


to_Entrezto_Related >gi|6323963  ref|NP_014034.1| Ymr304c-ap >gi|2131851|pir||S69861 hypothetical
            protein YMR304c-a - yeast (Saccharomyces cerevisiae)
            Length = 116

Frame -1 hits (HSPs):                           _________________         
                        __________________________________________________
Database sequence:     |                     |                    |       | 116
                       0                    50                  100

  Minus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 0.99, P = 0.63
 Identities = 16/41 (39%), Positives = 25/41 (60%), Frame = -1

Query:   227 YNVHIILHIYVSKKKHFTHITCF*ITNNSICAHFSYGQSLL 105
             Y+ H+I+++ V  K +  +   F + + SIC  FSYG SLL
Sbjct:    57 YSYHVIVYLCVLCKVYILY--SF-VKDFSICLPFSYGSSLL 94


to_Entrezto_Relatedto_Relatedto_ec >gi|461783|sp|P34188|COX1_CROLA  CYTOCHROME C OXIDASE POLYPEPTIDE I
            >gi|486794|pir||S35464 cytochrome-c oxidase (EC 1.9.3.1) chain I -
            hillstream loach (Crossostoma lacustre) mitochondrion
            >gi|2146917|pir||S60273 hypothetical protein 3 - hillstream loach
            (Crossostoma lacustre) mitochondrion (SGC1)
            >gi|336706|gb|AAB96813.1| (M91245) cytochrome c oxidase subunit I
            [Crossostoma lacustre] >gi|5835278|gnl|NCBI_MITO|COX1_10917
            cytochrome c oxidase subunit I
            Length = 516

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |             |              |      | 516
                       0            150           300            450
__________________

Annotated Domains:
   BLOCKS               BL00077A: Heme-copper oxidase catalytic  5..45
   BLOCKS               BL00077B: Heme-copper oxidase catalytic  67..112
   BLOCKS               BL00077C: Heme-copper oxidase catalytic  127..177
   BLOCKS               BL00077D: Heme-copper oxidase catalytic  200..254
   BLOCKS               BL00077E: Heme-copper oxidase catalytic  265..313
   BLOCKS               BL00077F: Heme-copper oxidase catalytic  348..398
   BLOCKS               BL00077G: Heme-copper oxidase catalytic  413..461
   DOMO                 DM00067: CYTOCHROME-COXIDASECHAINI       2..416
   DOMO                 DM00092: CYTOCHROME-COXIDASECHAINI       418..511
   Entrez               metal-binding site: IRON (HEME A) (PROBA 61
   Entrez               metal-binding site: COPPER B (PROBABLE). 240
   Entrez               metal-binding site: COPPER B (PROBABLE). 244
   Entrez               metal-binding site: COPPER B (PROBABLE). 290
   Entrez               metal-binding site: COPPER B (PROBABLE). 291
   Entrez               metal-binding site: IRON (HEME A3) (PROB 376
   Entrez               metal-binding site: IRON (HEME A) (PROBA 378
   PFAM                 COX1: Cytochrome C and Quinol oxidase po 5..461
   PRINTS               CYCOXIDASEI1: Cytochrome C oxidase subun 5..30
   PRINTS               CYCOXIDASEI2: Cytochrome C oxidase subun 52..75
   PRINTS               CYCOXIDASEI3: Cytochrome C oxidase subun 80..104
   PRINTS               CYCOXIDASEI4: Cytochrome C oxidase subun 122..134
   PRINTS               CYCOXIDASEI5: Cytochrome C oxidase subun 154..172
   PRINTS               CYCOXIDASEI6: Cytochrome C oxidase subun 183..202
   PRINTS               CYCOXIDASEI7: Cytochrome C oxidase subun 212..233
   PRINTS               CYCOXIDASEI8: Cytochrome C oxidase subun 234..255
   PRINTS               CYCOXIDASEI9: Cytochrome C oxidase subun 281..296
   PRINTS               0: Cytochrome C oxidase subu 305..326
   PRINTS               1: Cytochrome C oxidase subu 340..358
   PRINTS               2: Cytochrome C oxidase subu 368..387
   PRINTS               3: Cytochrome C oxidase subu 418..439
   PRODOM               PD000298: COX1(91) QOX1(2)               21..92
   PRODOM               PD000327: COX1(89) QOX1(2)               94..141
   PRODOM               PD186028: COX1(86) QOX1(2)               143..202
   PRODOM               PD000315: COX1(88) QOX1(2)               206..288
   PRODOM               PD000321: COX1(87) QOX1(2)               290..345
   PRODOM               PD186030: COX1(86)                       351..374
   PRODOM               PD000313: COX1(88) QOX1(2)               376..446
   PRODOM               PD000369: COX1(84)                       449..510
__________________


  Minus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 1.0, Sum P(2) = 0.64
 Identities = 12/24 (50%), Positives = 14/24 (58%), Frame = -3

Query:   174 TYNMLLDNEQQYMRPFFVWAIIIT 103
             T NM      QY  P FVWA++IT
Sbjct:   168 TINMKPPALSQYQTPLFVWAVLIT 191

 Score = 33 (11.6 bits), Expect = 1.0, Sum P(2) = 0.64
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|2213675|gb|AAB61540.1|  (U83781) cytochrome oxidase I [Asio flammeus]
            Length = 367

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                        ___                          
                        __________________________________________________
Database sequence:     |                    |                   |         | 367
                       0                  150                 300

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 10/22 (45%), Positives = 14/22 (63%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM   +  QY  P FVW+++IT
Sbjct:   156 NMKPPSLSQYQTPLFVWSVLIT 177

 Score = 33 (11.6 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    39 IYNVVVTAHAFV 50


to_Entrezto_Relatedto_Related >gi|2213732|gb|AAB61554.1|  (U83783) cytochrome oxidase I [Ninox philippensis]
            Length = 367

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                        ___                          
                        __________________________________________________
Database sequence:     |                    |                   |         | 367
                       0                  150                 300

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 10/22 (45%), Positives = 14/22 (63%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM   +  QY  P FVW+++IT
Sbjct:   156 NMKPPSLSQYQTPLFVWSVLIT 177

 Score = 33 (11.6 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    39 IYNVIVTAHAFV 50


to_Entrezto_Relatedto_Related >gi|2213744|gb|AAB61556.1|  (U83779) cytochrome oxidase I [Otus megalotis
            everetti]
            Length = 367

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                        ___                          
                        __________________________________________________
Database sequence:     |                    |                   |         | 367
                       0                  150                 300

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 10/22 (45%), Positives = 14/22 (63%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM   +  QY  P FVW+++IT
Sbjct:   156 NMKPPSLSQYQTPLFVWSVLIT 177

 Score = 33 (11.6 bits), Expect = 1.2, Sum P(2) = 0.70
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    39 IYNVIVTAHAFV 50


to_Entrezto_Relatedto_Related >gi|7427819|pir||ODXL1  cytochrome-c oxidase (EC 1.9.3.1) chain I - African
            clawed frog mitochondrion >gi|807685|gb|AAA66460.1| (M10217)
            cytochrome c oxidase subunit I [Xenopus laevis]
            >gi|5834984|gnl|NCBI_MITO|COX1_10422 cytochrome c oxidase subunit I
            Length = 518

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |             |              |      | 518
                       0            150           300            450

  Minus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 2.1, Sum P(2) = 0.88
 Identities = 11/24 (45%), Positives = 14/24 (58%), Frame = -3

Query:   174 TYNMLLDNEQQYMRPFFVWAIIIT 103
             T NM      QY  P FVW+++IT
Sbjct:   168 TINMKPPAMSQYQTPLFVWSVLIT 191

 Score = 32 (11.3 bits), Expect = 2.1, Sum P(2) = 0.88
 Identities = 5/12 (41%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H ++
Sbjct:    53 IYNVIVTAHAFI 64


to_Entrezto_Relatedto_Relatedto_ec >gi|117002|sp|P00398|COX1_XENLA  CYTOCHROME C OXIDASE POLYPEPTIDE I
            Length = 519

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |             |              |      | 519
                       0            150           300            450
__________________

Annotated Domains:
   BLOCKS               BL00077A: Heme-copper oxidase catalytic  5..45
   BLOCKS               BL00077B: Heme-copper oxidase catalytic  67..112
   BLOCKS               BL00077C: Heme-copper oxidase catalytic  127..177
   BLOCKS               BL00077D: Heme-copper oxidase catalytic  200..254
   BLOCKS               BL00077E: Heme-copper oxidase catalytic  265..313
   BLOCKS               BL00077F: Heme-copper oxidase catalytic  348..398
   BLOCKS               BL00077G: Heme-copper oxidase catalytic  413..461
   DOMO                 DM00067: CYTOCHROME-COXIDASECHAINI       2..416
   DOMO                 DM00092: CYTOCHROME-COXIDASECHAINI       418..511
   Entrez               metal-binding site: IRON (HEME A) (PROBA 61
   Entrez               metal-binding site: COPPER B (PROBABLE). 240
   Entrez               metal-binding site: COPPER B (PROBABLE). 244
   Entrez               metal-binding site: COPPER B (PROBABLE). 290
   Entrez               metal-binding site: COPPER B (PROBABLE). 291
   Entrez               metal-binding site: IRON (HEME A3) (PROB 376
   Entrez               metal-binding site: IRON (HEME A) (PROBA 378
   PFAM                 COX1: Cytochrome C and Quinol oxidase po 5..461
   PRINTS               CYCOXIDASEI1: Cytochrome C oxidase subun 5..30
   PRINTS               CYCOXIDASEI2: Cytochrome C oxidase subun 52..75
   PRINTS               CYCOXIDASEI3: Cytochrome C oxidase subun 80..104
   PRINTS               CYCOXIDASEI4: Cytochrome C oxidase subun 122..134
   PRINTS               CYCOXIDASEI5: Cytochrome C oxidase subun 154..172
   PRINTS               CYCOXIDASEI6: Cytochrome C oxidase subun 183..202
   PRINTS               CYCOXIDASEI7: Cytochrome C oxidase subun 212..233
   PRINTS               CYCOXIDASEI8: Cytochrome C oxidase subun 234..255
   PRINTS               CYCOXIDASEI9: Cytochrome C oxidase subun 281..296
   PRINTS               0: Cytochrome C oxidase subu 305..326
   PRINTS               1: Cytochrome C oxidase subu 340..358
   PRINTS               2: Cytochrome C oxidase subu 368..387
   PRINTS               3: Cytochrome C oxidase subu 418..439
   PRODOM               PD000298: COX1(91) QOX1(2)               21..92
   PRODOM               PD000327: COX1(89) QOX1(2)               94..141
   PRODOM               PD186028: COX1(86) QOX1(2)               143..202
   PRODOM               PD000315: COX1(88) QOX1(2)               206..288
   PRODOM               PD000321: COX1(87) QOX1(2)               290..345
   PRODOM               PD186030: COX1(86)                       351..374
   PRODOM               PD000313: COX1(88) QOX1(2)               376..446
   PRODOM               PD000369: COX1(84)                       449..503
__________________


  Minus Strand HSPs:

 Score = 59 (20.8 bits), Expect = 2.1, Sum P(2) = 0.88
 Identities = 11/24 (45%), Positives = 14/24 (58%), Frame = -3

Query:   174 TYNMLLDNEQQYMRPFFVWAIIIT 103
             T NM      QY  P FVW+++IT
Sbjct:   168 TINMKPPAMSQYQTPLFVWSVLIT 191

 Score = 32 (11.3 bits), Expect = 2.1, Sum P(2) = 0.88
 Identities = 5/12 (41%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H ++
Sbjct:    53 IYNVIVTAHAFI 64


to_Entrezto_Relatedto_Relatedto_ec >gi|5921838|sp|O79429|COX1_RABIT  CYTOCHROME C OXIDASE POLYPEPTIDE I
            >gi|7432807|pir||T11482 cytochrome-c oxidase (EC 1.9.3.1) chain I -
            rabbit mitochondrion >gi|3293009|emb|CAA04849.1| (AJ001588)
            cytochrome c oxidase subunit I [Oryctolagus cuniculus]
            >gi|5835529|gnl|NCBI_MITO|COX1_13726 cytochrome c oxidase subunit I
            Length = 513

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |              |             |      | 513
                       0            150            300           450
__________________

Annotated Domains:
   Entrez               metal-binding site: IRON (HEME A) (PROBA 61
   Entrez               metal-binding site: COPPER B (PROBABLE). 240
   Entrez               metal-binding site: COPPER B (PROBABLE). 244
   Entrez               metal-binding site: COPPER B (PROBABLE). 290
   Entrez               metal-binding site: COPPER B (PROBABLE). 291
   Entrez               metal-binding site: IRON (HEME A3) (PROB 376
   Entrez               metal-binding site: IRON (HEME A) (PROBA 378
   PFAM                 COX1: Cytochrome C and Quinol oxidase po 5..461
   PRINTS               CYCOXIDASEI1: Cytochrome C oxidase subun 5..30
   PRINTS               CYCOXIDASEI2: Cytochrome C oxidase subun 52..75
   PRINTS               CYCOXIDASEI3: Cytochrome C oxidase subun 80..104
   PRINTS               CYCOXIDASEI4: Cytochrome C oxidase subun 122..134
   PRINTS               CYCOXIDASEI5: Cytochrome C oxidase subun 154..172
   PRINTS               CYCOXIDASEI6: Cytochrome C oxidase subun 183..202
   PRINTS               CYCOXIDASEI7: Cytochrome C oxidase subun 212..233
   PRINTS               CYCOXIDASEI8: Cytochrome C oxidase subun 234..255
   PRINTS               CYCOXIDASEI9: Cytochrome C oxidase subun 281..296
   PRINTS               0: Cytochrome C oxidase subu 305..326
   PRINTS               1: Cytochrome C oxidase subu 340..358
   PRINTS               2: Cytochrome C oxidase subu 368..387
   PRINTS               3: Cytochrome C oxidase subu 418..439
   PRODOM               PD000298: COX1(91) QOX1(2)               21..92
   PRODOM               PD000327: COX1(89) QOX1(2)               94..141
   PRODOM               PD186028: COX1(86) QOX1(2)               143..202
   PRODOM               PD000315: COX1(88) QOX1(2)               206..288
   PRODOM               PD000321: COX1(87) QOX1(2)               290..345
   PRODOM               PD186030: COX1(86)                       351..374
   PRODOM               PD000313: COX1(88) QOX1(2)               376..446
   PRODOM               PD000369: COX1(84)                       449..511
__________________


  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+++IT
Sbjct:   170 NMKAPAMSQYQTPLFVWSVLIT 191

 Score = 33 (11.6 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|4239865|dbj|BAA74722.1|  (AB016733) cytochrome C oxidase subunit I [Galago
            senegalensis]
            Length = 513

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |              |             |      | 513
                       0            150            300           450

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 11/22 (50%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW++IIT
Sbjct:   170 NMKPPAMSQYQTPLFVWSVIIT 191

 Score = 33 (11.6 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Relatedto_ec >gi|116974|sp|P24985|COX1_CYPCA  CYTOCHROME C OXIDASE POLYPEPTIDE I
            >gi|422558|pir||S36008 cytochrome-c oxidase (EC 1.9.3.1) chain I -
            common carp mitochondrion >gi|578691|emb|CAA43339.1| (X61010)
            cytochrome c oxidase subunit I [Cyprinus carpio]
            >gi|5835031|gnl|NCBI_MITO|COX1_10464 cytochrome c oxidase subunit I
            Length = 516

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |             |              |      | 516
                       0            150           300            450
__________________

Annotated Domains:
   BLOCKS               BL00077A: Heme-copper oxidase catalytic  5..45
   BLOCKS               BL00077B: Heme-copper oxidase catalytic  67..112
   BLOCKS               BL00077C: Heme-copper oxidase catalytic  127..177
   BLOCKS               BL00077D: Heme-copper oxidase catalytic  200..254
   BLOCKS               BL00077E: Heme-copper oxidase catalytic  265..313
   BLOCKS               BL00077F: Heme-copper oxidase catalytic  348..398
   BLOCKS               BL00077G: Heme-copper oxidase catalytic  413..461
   DOMO                 DM00067: CYTOCHROME-COXIDASECHAINI       2..416
   DOMO                 DM00092: CYTOCHROME-COXIDASECHAINI       418..511
   Entrez               metal-binding site: IRON (HEME A) (PROBA 61
   Entrez               metal-binding site: COPPER B (PROBABLE). 240
   Entrez               metal-binding site: COPPER B (PROBABLE). 244
   Entrez               metal-binding site: COPPER B (PROBABLE). 290
   Entrez               metal-binding site: COPPER B (PROBABLE). 291
   Entrez               metal-binding site: IRON (HEME A3) (PROB 376
   Entrez               metal-binding site: IRON (HEME A) (PROBA 378
   PFAM                 COX1: Cytochrome C and Quinol oxidase po 5..461
   PRINTS               CYCOXIDASEI1: Cytochrome C oxidase subun 5..30
   PRINTS               CYCOXIDASEI2: Cytochrome C oxidase subun 52..75
   PRINTS               CYCOXIDASEI3: Cytochrome C oxidase subun 80..104
   PRINTS               CYCOXIDASEI4: Cytochrome C oxidase subun 122..134
   PRINTS               CYCOXIDASEI5: Cytochrome C oxidase subun 154..172
   PRINTS               CYCOXIDASEI6: Cytochrome C oxidase subun 183..202
   PRINTS               CYCOXIDASEI7: Cytochrome C oxidase subun 212..233
   PRINTS               CYCOXIDASEI8: Cytochrome C oxidase subun 234..255
   PRINTS               CYCOXIDASEI9: Cytochrome C oxidase subun 281..296
   PRINTS               0: Cytochrome C oxidase subu 305..326
   PRINTS               1: Cytochrome C oxidase subu 340..358
   PRINTS               2: Cytochrome C oxidase subu 368..387
   PRINTS               3: Cytochrome C oxidase subu 418..439
   PRODOM               PD000298: COX1(91) QOX1(2)               21..92
   PRODOM               PD000327: COX1(89) QOX1(2)               94..141
   PRODOM               PD186028: COX1(86) QOX1(2)               143..202
   PRODOM               PD000315: COX1(88) QOX1(2)               206..288
   PRODOM               PD000321: COX1(87) QOX1(2)               290..345
   PRODOM               PD186030: COX1(86)                       351..374
   PRODOM               PD000313: COX1(88) QOX1(2)               376..447
   PRODOM               PD000369: COX1(84)                       449..510
__________________


  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 10/24 (41%), Positives = 14/24 (58%), Frame = -3

Query:   174 TYNMLLDNEQQYMRPFFVWAIIIT 103
             T NM      QY  P FVW++++T
Sbjct:   168 TINMKPPAISQYQTPLFVWSVLVT 191

 Score = 33 (11.6 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Relatedto_ec >gi|2493818|sp|Q36775|COX1_GADMO  CYTOCHROME C OXIDASE POLYPEPTIDE I
            >gi|630946|pir||S45351 cytochrome-c oxidase (EC 1.9.3.1) chain I -
            Atlantic cod mitochondrion >gi|578934|emb|CAA53965.1| (X76364)
            cytochrome c oxidase I [Gadus morhua] >gi|3805892|emb|CAA68108.1|
            (X99772) cytochrome oxidase I [Gadus morhua]
            >gi|5835809|gnl|NCBI_MITO|COX1_15065 cytochrome c oxidase subunit I
            Length = 516

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                    __                               
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |             |              |      | 516
                       0            150           300            450
__________________

Annotated Domains:
   BLOCKS               BL00077A: Heme-copper oxidase catalytic  5..45
   BLOCKS               BL00077B: Heme-copper oxidase catalytic  67..112
   BLOCKS               BL00077C: Heme-copper oxidase catalytic  127..177
   BLOCKS               BL00077D: Heme-copper oxidase catalytic  200..254
   BLOCKS               BL00077E: Heme-copper oxidase catalytic  265..313
   BLOCKS               BL00077F: Heme-copper oxidase catalytic  348..398
   BLOCKS               BL00077G: Heme-copper oxidase catalytic  413..461
   Entrez               metal-binding site: IRON (HEME A) (PROBA 61
   Entrez               metal-binding site: COPPER B (PROBABLE). 240
   Entrez               metal-binding site: COPPER B (PROBABLE). 244
   Entrez               metal-binding site: COPPER B (PROBABLE). 290
   Entrez               metal-binding site: COPPER B (PROBABLE). 291
   Entrez               metal-binding site: IRON (HEME A3) (PROB 376
   Entrez               metal-binding site: IRON (HEME A) (PROBA 378
   PFAM                 COX1: Cytochrome C and Quinol oxidase po 5..461
   PRINTS               CYCOXIDASEI1: Cytochrome C oxidase subun 5..30
   PRINTS               CYCOXIDASEI2: Cytochrome C oxidase subun 52..75
   PRINTS               CYCOXIDASEI3: Cytochrome C oxidase subun 80..104
   PRINTS               CYCOXIDASEI4: Cytochrome C oxidase subun 122..134
   PRINTS               CYCOXIDASEI5: Cytochrome C oxidase subun 154..172
   PRINTS               CYCOXIDASEI6: Cytochrome C oxidase subun 183..202
   PRINTS               CYCOXIDASEI7: Cytochrome C oxidase subun 212..233
   PRINTS               CYCOXIDASEI8: Cytochrome C oxidase subun 234..255
   PRINTS               CYCOXIDASEI9: Cytochrome C oxidase subun 281..296
   PRINTS               0: Cytochrome C oxidase subu 305..326
   PRINTS               1: Cytochrome C oxidase subu 340..358
   PRINTS               2: Cytochrome C oxidase subu 368..387
   PRINTS               3: Cytochrome C oxidase subu 418..439
   PRODOM               PD000298: COX1(91) QOX1(2)               21..92
   PRODOM               PD000327: COX1(89) QOX1(2)               94..141
   PRODOM               PD186028: COX1(86) QOX1(2)               143..202
   PRODOM               PD000315: COX1(88) QOX1(2)               206..288
   PRODOM               PD000321: COX1(87) QOX1(2)               290..345
   PRODOM               PD186030: COX1(86)                       351..374
   PRODOM               PD000313: COX1(88) QOX1(2)               376..446
   PRODOM               PD000369: COX1(84)                       449..510
__________________


  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 9/14 (64%), Positives = 11/14 (78%), Frame = -3

Query:   144 QYMRPFFVWAIIIT 103
             QY  P FVWA++IT
Sbjct:   178 QYQTPLFVWAVLIT 191

 Score = 33 (11.6 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|6647485|sp|O78681|COX1_CARAU  CYTOCHROME C OXIDASE POLYPEPTIDE I
            >gi|3288689|dbj|BAA31240.1| (AB006953) cytochrome c oxidase subunit
            I [Carassius auratus] >gi|5835781|gnl|NCBI_MITO|COX1_15063
            cytochrome c oxidase subunit I
            Length = 516

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |             |              |      | 516
                       0            150           300            450

  Minus Strand HSPs:

 Score = 57 (20.1 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 10/24 (41%), Positives = 14/24 (58%), Frame = -3

Query:   174 TYNMLLDNEQQYMRPFFVWAIIIT 103
             T NM      QY  P FVW++++T
Sbjct:   168 TINMKPPAISQYQTPLFVWSVLVT 191

 Score = 33 (11.6 bits), Expect = 2.6, Sum P(2) = 0.93
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|7262869|gb|AAF44002.1|AF168061_1  (AF168061) cytochrome oxidase subunit 1
            [Colius striatus]
            Length = 482

Frame -1 hits (HSPs):       __                                            
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |               |               |              |   | 482
                       0             150             300            450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 2.9, Sum P(2) = 0.94
 Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+++IT
Sbjct:   160 NMKPPTLSQYQTPLFVWSVLIT 181

 Score = 33 (11.6 bits), Expect = 2.9, Sum P(2) = 0.94
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    43 IYNVIVTAHAFV 54


to_Entrezto_Relatedto_Related >gi|6685362|sp|Q9ZXY2|COX1_PAPHA  CYTOCHROME C OXIDASE POLYPEPTIDE I
            >gi|7514675|pir||T11508 cytochrome-c oxidase (EC 1.9.3.1) chain I -
            baboon mitochondrion >gi|4049478|emb|CAA76996.1| (Y18001)
            cytochrome c oxidase subunit I [Papio hamadryas]
            >gi|5835641|gnl|NCBI_MITO|COX1_14104 cytochrome c oxidase subunit I
            Length = 513

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |              |             |      | 513
                       0            150            300           450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 11/22 (50%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+I+IT
Sbjct:   170 NMKPPAMSQYQTPLFVWSILIT 191

 Score = 33 (11.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|6045114|dbj|BAA85287.1|  (D38115) cytochrome c oxidase subunit 1 [Pongo
            pygmaeus] >gi|5835170|gnl|NCBI_MITO|COX1_10553 cytochrome c oxidase
            subunit I
            Length = 513

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |              |             |      | 513
                       0            150            300           450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 11/22 (50%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+I+IT
Sbjct:   170 NMKPPAMSQYQTPLFVWSILIT 191

 Score = 33 (11.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Related >gi|5835795|gnl|NCBI_MITO|COX1_15064  cytochrome c oxidase subunit I
            Length = 514

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |              |             |      | 514
                       0            150            300           450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 11/22 (50%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+I+IT
Sbjct:   170 NMKPPAVSQYQTPLFVWSILIT 191

 Score = 33 (11.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVVVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|6851068|emb|CAB71161.1|  (Y19192) cytochrome oxidase subunit I [Talpa
            europaea] >gi|7580466|gnl|NCBI_MITO|COX1_15261 cytochrome c oxidase
            subunit I
            Length = 514

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |              |             |      | 514
                       0            150            300           450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 11/22 (50%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+I+IT
Sbjct:   170 NMKPPAMSQYQTPLFVWSILIT 191

 Score = 33 (11.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|5103711|dbj|BAA79212.1|  (AB016606) cytochrome oxidase subunit I [Eumeces
            egregius] >gi|5836019|gnl|NCBI_MITO|COX1_15102 cytochrome c oxidase
            subunit I
            Length = 515

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |              |             |      | 515
                       0            150            300           450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+++IT
Sbjct:   170 NMKPPTMTQYQTPLFVWSVLIT 191

 Score = 33 (11.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Relatedto_ec >gi|1352137|sp|P48170|COX1_ONCMY  CYTOCHROME C OXIDASE POLYPEPTIDE I
            >gi|7432802|pir||T09859 cytochrome-c oxidase (EC 1.9.3.1) chain I -
            rainbow trout mitochondrion >gi|463156|gb|AAB03349.1| (L29771)
            cytochrome oxidase subunit 1 [Oncorhynchus mykiss]
            >gi|5835264|gnl|NCBI_MITO|COX1_10885 cytochrome c oxidase subunit I
            Length = 516

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                    __                               
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |             |              |      | 516
                       0            150           300            450
__________________

Annotated Domains:
   BLOCKS               BL00077A: Heme-copper oxidase catalytic  5..45
   BLOCKS               BL00077B: Heme-copper oxidase catalytic  67..112
   BLOCKS               BL00077C: Heme-copper oxidase catalytic  127..177
   BLOCKS               BL00077D: Heme-copper oxidase catalytic  200..254
   BLOCKS               BL00077E: Heme-copper oxidase catalytic  265..313
   BLOCKS               BL00077F: Heme-copper oxidase catalytic  348..398
   BLOCKS               BL00077G: Heme-copper oxidase catalytic  413..461
   DOMO                 DM00067: CYTOCHROME-COXIDASECHAINI       2..416
   DOMO                 DM00092: CYTOCHROME-COXIDASECHAINI       418..511
   Entrez               metal-binding site: IRON (HEME A) (PROBA 61
   Entrez               metal-binding site: COPPER B (PROBABLE). 240
   Entrez               metal-binding site: COPPER B (PROBABLE). 244
   Entrez               metal-binding site: COPPER B (PROBABLE). 290
   Entrez               metal-binding site: COPPER B (PROBABLE). 291
   Entrez               metal-binding site: IRON (HEME A3) (PROB 376
   Entrez               metal-binding site: IRON (HEME A) (PROBA 378
   PFAM                 COX1: Cytochrome C and Quinol oxidase po 5..461
   PRINTS               CYCOXIDASEI1: Cytochrome C oxidase subun 5..30
   PRINTS               CYCOXIDASEI2: Cytochrome C oxidase subun 52..75
   PRINTS               CYCOXIDASEI3: Cytochrome C oxidase subun 80..104
   PRINTS               CYCOXIDASEI4: Cytochrome C oxidase subun 122..134
   PRINTS               CYCOXIDASEI5: Cytochrome C oxidase subun 154..172
   PRINTS               CYCOXIDASEI6: Cytochrome C oxidase subun 183..202
   PRINTS               CYCOXIDASEI7: Cytochrome C oxidase subun 212..233
   PRINTS               CYCOXIDASEI8: Cytochrome C oxidase subun 234..255
   PRINTS               CYCOXIDASEI9: Cytochrome C oxidase subun 281..296
   PRINTS               0: Cytochrome C oxidase subu 305..326
   PRINTS               1: Cytochrome C oxidase subu 340..358
   PRINTS               2: Cytochrome C oxidase subu 368..387
   PRINTS               3: Cytochrome C oxidase subu 418..439
   PRODOM               PD000298: COX1(91) QOX1(2)               21..92
   PRODOM               PD000327: COX1(89) QOX1(2)               118..141
   PRODOM               PD186028: COX1(86) QOX1(2)               143..202
   PRODOM               PD000315: COX1(88) QOX1(2)               206..288
   PRODOM               PD000321: COX1(87) QOX1(2)               290..345
   PRODOM               PD186030: COX1(86)                       351..374
   PRODOM               PD000313: COX1(88) QOX1(2)               376..446
   PRODOM               PD000369: COX1(84)                       449..510
__________________


  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 8/14 (57%), Positives = 11/14 (78%), Frame = -3

Query:   144 QYMRPFFVWAIIIT 103
             QY  P FVWA+++T
Sbjct:   178 QYQTPLFVWAVLVT 191

 Score = 33 (11.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|6647504|sp|Q9ZZM6|COX1_SALSA  CYTOCHROME C OXIDASE POLYPEPTIDE I
            >gi|7432803|pir||T09949 cytochrome-c oxidase (EC 1.9.3.1) chain I -
            Atlantic salmon mitochondrion >gi|3776537|gb|AAD04735.1| (U12143)
            cytochrome oxidase subunit I [Salmo salar]
            >gi|7381064|gb|AAF61380.1|AF133701_3 (AF133701) cytochrome c
            oxidase subunit I [Salmo salar]
            >gi|5835627|gnl|NCBI_MITO|COX1_14000 cytochrome c oxidase subunit I
            Length = 516

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                    __                               
                        __________________________________________________
Database sequence:     |              |             |              |      | 516
                       0            150           300            450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 8/14 (57%), Positives = 11/14 (78%), Frame = -3

Query:   144 QYMRPFFVWAIIIT 103
             QY  P FVWA+++T
Sbjct:   178 QYQTPLFVWAVLVT 191

 Score = 33 (11.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|5257512|gb|AAD41374.1|AF154850_3  (AF154850) cytochrome oxidase subunit 1
            [Salvelinus fontinalis] >gi|5257526|gb|AAD41387.1|AF154851_3
            (AF154851) cytochrome oxidase subunit 1 [Salvelinus alpinus]
            >gi|5835893|gnl|NCBI_MITO|COX1_15075 cytochrome c oxidase subunit I
            >gi|5835907|gnl|NCBI_MITO|COX1_15076 cytochrome c oxidase subunit I
            Length = 516

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                    __                               
                        __________________________________________________
Database sequence:     |              |             |              |      | 516
                       0            150           300            450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 8/14 (57%), Positives = 11/14 (78%), Frame = -3

Query:   144 QYMRPFFVWAIIIT 103
             QY  P FVWA+++T
Sbjct:   178 QYQTPLFVWAVLVT 191

 Score = 33 (11.6 bits), Expect = 3.3, Sum P(2) = 0.96
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    53 IYNVIVTAHAFV 64


to_Entrezto_Relatedto_Related >gi|7460701|pir||T41861  AcMNPV orf124 - Bombyx mori nuclear polyhedrosis virus
            (isolate T3) >gi|3745943|gb|AAC63790.1| (L33180) AcMNPV orf124
            [Bombyx mori nuclear polyhedrosis virus]
            Length = 244

Frame  3 hits (HSPs):                               _____                 
                        __________________________________________________
Database sequence:     |          |         |         |         |         | 244
                       0         50       100       150       200

  Plus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 3.6, P = 0.97
 Identities = 12/19 (63%), Positives = 14/19 (73%), Frame = +3

Query:   129 MGAYTVVRYLKACYMCKMF 185
             MGAYT  RY K+CYM  +F
Sbjct:   142 MGAYTDYRYAKSCYMVILF 160


to_Entrezto_Relatedto_Related >gi|7514680|pir||T10988  cytochrome-c oxidase (EC 1.9.3.1) chain I - Chrysemys
            picta mitochondrion >gi|4530190|gb|AAD21927.1| (AF069423)
            cytochrome oxidase subunit I [Chrysemys picta]
            >gi|5835739|gnl|NCBI_MITO|COX1_15054 cytochrome c oxidase subunit I
            Length = 515

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |              |             |      | 515
                       0            150            300           450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 4.2, Sum P(2) = 0.98
 Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+++IT
Sbjct:   170 NMKSPAMSQYQTPLFVWSVLIT 191

 Score = 32 (11.3 bits), Expect = 4.2, Sum P(2) = 0.98
 Identities = 5/12 (41%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H ++
Sbjct:    53 IYNVIVTAHAFI 64


to_Entrezto_Relatedto_Related >gi|5103691|dbj|BAA79199.1|  (AB012104) cytochrome oxidase subunit 1 [Chelonia
            mydas] >gi|5836005|gnl|NCBI_MITO|COX1_15100 cytochrome c oxidase
            subunit I
            Length = 515

Frame -1 hits (HSPs):        __                                           
Frame -3 hits (HSPs):                   ___                               
                        __________________________________________________
Database sequence:     |              |              |             |      | 515
                       0            150            300           450

  Minus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 4.2, Sum P(2) = 0.98
 Identities = 10/22 (45%), Positives = 13/22 (59%), Frame = -3

Query:   168 NMLLDNEQQYMRPFFVWAIIIT 103
             NM      QY  P FVW+++IT
Sbjct:   170 NMKSPAMSQYQTPLFVWSVLIT 191

 Score = 32 (11.3 bits), Expect = 4.2, Sum P(2) = 0.98
 Identities = 5/12 (41%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H ++
Sbjct:    53 IYNVIVTAHAFI 64


to_Entrezto_Relatedto_Related >gi|7296939|gb|AAF52212.1|  (AE003608) CG14036 gene product [Drosophila
            melanogaster]
            Length = 93

Frame  1 hits (HSPs):       _____________                                 
                        __________________________________________________
Database sequence:     |          |         |          |          |       | 93
                       0         20        40         60         80

  Plus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 4.3, P = 0.99
 Identities = 13/23 (56%), Positives = 16/23 (69%), Frame = +1

Query:   115 CPYEKWAHILLFVI*KHVI-CVK 180
             CPY+K   ILLF + KH+I C K
Sbjct:     9 CPYDKSHRILLFRMPKHLIKCEK 31


to_Entrezto_Relatedto_Related >gi|3395483|emb|CAA08919.1|  (AJ009963) farnesyl pyrophosphate synthase
            [Drosophila melanogaster]
            Length = 380

Frame -1 hits (HSPs):                         ________                    
                        __________________________________________________
Database sequence:     |                   |                   |          | 380
                       0                 150                 300

  Minus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 5.3, P = 1.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Frame = -1

Query:   203 IYVSKKKHFTHITCF*ITNNSICAHFSY----GQSLLQFKIGLITLE*TIINYKHALLIN 36
             +Y   KKHF+H+ C+ +    +    +Y    GQSL Q        E T+ NYK A++ N
Sbjct:   169 MYAILKKHFSHLDCY-VALMELFHEITYITTCGQSLDQLNSNRCVSEFTMENYK-AIVEN 226


to_Entrezto_Relatedto_Related >gi|4689332|gb|AAD27853.1|AF132554_1  (AF132554) farnesyl pyrophosphate synthase
            [Drosophila melanogaster] >gi|7303618|gb|AAF58670.1| (AE003826)
            Fpps gene product [Drosophila melanogaster]
            Length = 419

Frame -1 hits (HSPs):                           ________                  
                        __________________________________________________
Database sequence:     |                 |                 |              | 419
                       0               150               300

  Minus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 6.0, P = 1.0
 Identities = 20/58 (34%), Positives = 30/58 (51%), Frame = -1

Query:   203 IYVSKKKHFTHITCF*ITNNSICAHFSY----GQSLLQFKIGLITLE*TIINYKHALLIN 36
             +Y   KKHF+H+ C+ +    +    +Y    GQSL Q        E T+ NYK A++ N
Sbjct:   208 MYAILKKHFSHLDCY-VALMELFHEITYITTCGQSLDQLNSNRCVSEFTMENYK-AIVEN 265


to_Entrezto_Related >gi|6323825  ref|NP_013896.1| Ymr172c-ap >gi|2131843|pir||S69869 hypothetical
            protein YMR172c-a - yeast (Saccharomyces cerevisiae)
            Length = 127

Frame  1 hits (HSPs):   ________                                          
                        __________________________________________________
Database sequence:     |                   |                  |           | 127
                       0                  50                100

  Plus Strand HSPs:

 Score = 58 (20.4 bits), Expect = 6.2, P = 1.0
 Identities = 9/19 (47%), Positives = 13/19 (68%), Frame = +1

Query:   169 ICVKCFFLDTYICKMMCTL 225
             +C  CFFL +Y CK + T+
Sbjct:     3 LCYTCFFLPSYDCKRLFTI 21


to_Entrezto_Relatedto_Related >gi|2493184|sp|O10300|VP47_NPVOP  VIRAL TRANSCRIPTION REGULATOR P47
            >gi|7521795|pir||T10314 viral transcription regulator p47 - Orgyia
            pseudotsugata nuclear polyhedrosis virus >gi|1911291|gb|AAC59044.1|
            (U75930) p47 [Orgyia pseudotsugata nuclear polyhedrosis virus]
            Length = 399

Frame -3 hits (HSPs):                                      ________       
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 399
                       0                150                300
__________________

Annotated Domains:
   PRODOM               PD042306: VP47(2) O92407(1) Q9YMS6(1)    6..395
__________________


  Minus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 7.2, P = 1.0
 Identities = 17/56 (30%), Positives = 25/56 (44%), Frame = -3

Query:   222 RAHHFTYICIQKKTFYTY---NMLLDNEQQYMRPFFVWAIIITV*NWFNNIGINNYKL 58
             RA+HFT+       FY Y   N         M  F ++ I+     WFN   +N++ L
Sbjct:   285 RANHFTFYVYNSLKFYYYCLKNKFAFESNDKMLMFLLYTIVSL--EWFNKGHLNSFTL 340


to_Entrezto_Relatedto_Related >gi|939934|emb|CAA53969.1|  (X76367) cytochrome c oxidase I [Salvelinus alpinus]
            Length = 166

Frame -1 hits (HSPs):   ____                                              
Frame -3 hits (HSPs):                                        _____        
                        __________________________________________________
Database sequence:     |              |              |              |     | 166
                       0             50            100            150

  Minus Strand HSPs:

 Score = 53 (18.7 bits), Expect = 7.5, Sum P(2) = 1.0
 Identities = 7/14 (50%), Positives = 11/14 (78%), Frame = -3

Query:   144 QYMRPFFVWAIIIT 103
             QY  P F+WA+++T
Sbjct:   126 QYQTPLFLWAVLVT 139

 Score = 33 (11.6 bits), Expect = 7.5, Sum P(2) = 1.0
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:     1 IYNVIVTAHAFV 12


to_Entrezto_Relatedto_Related >gi|7595885|gb|AAF64483.1|  (AF241374) cytochrome oxidase I [Arctopsyche
            grandis] >gi|7595889|gb|AAF64485.1| (AF241376) cytochrome oxidase I
            [Arctopsyche grandis] >gi|7595893|gb|AAF64487.1| (AF241378)
            cytochrome oxidase I [Arctopsyche grandis]
            >gi|7595895|gb|AAF64488.1| (AF241379) cytochrome oxidase I
            [Arctopsyche grandis]
            Length = 208

Frame -1 hits (HSPs):          ___                                        
Frame -3 hits (HSPs):                                      ______         
                        __________________________________________________
Database sequence:     |           |           |           |           |  | 208
                       0          50         100         150         200

  Minus Strand HSPs:

 Score = 54 (19.0 bits), Expect = 7.7, Sum P(2) = 1.0
 Identities = 9/23 (39%), Positives = 14/23 (60%), Frame = -3

Query:   171 YNMLLDNEQQYMRPFFVWAIIIT 103
             +NM   N    + P FVW+++IT
Sbjct:   147 FNMKFKNMNLDLMPLFVWSVLIT 169

 Score = 33 (11.6 bits), Expect = 7.7, Sum P(2) = 1.0
 Identities = 6/12 (50%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H +V
Sbjct:    31 IYNVIVTAHAFV 42


to_Entrezto_Relatedto_Related >gi|6224997|sp|Q9ZE38|ACKA_RICPR  ACETATE KINASE (ACETOKINASE)
            >gi|7434522|pir||D71720 acetate kinase (ackA) RP110 - Rickettsia
            prowazekii >gi|3860678|emb|CAA14579.1| (AJ235270) ACETATE KINASE
            (ackA) [Rickettsia prowazekii]
            Length = 385

Frame -1 hits (HSPs):                         ______                      
                        __________________________________________________
Database sequence:     |                   |                  |           | 385
                       0                 150                300

  Minus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 8.9, P = 1.0
 Identities = 18/47 (38%), Positives = 22/47 (46%), Frame = -1

Query:   227 YNVHIILHIYVSKKKHFTHITCF*ITNNSICAHFSYGQSLLQFKIGL 87
             Y  H + + YVS   HF  IT   +   +I AH   G SL   K GL
Sbjct:   172 YGFHGLSYQYVSS--HFKEITMEDLPPKAIIAHLGSGSSLCAIKNGL 216


to_Entrezto_Relatedto_Related >gi|7595887|gb|AAF64484.1|  (AF241375) cytochrome oxidase I [Arctopsyche
            grandis] >gi|7595891|gb|AAF64486.1| (AF241377) cytochrome oxidase I
            [Arctopsyche grandis]
            Length = 207

Frame -1 hits (HSPs):          ___                                        
Frame -3 hits (HSPs):                                      ______         
                        __________________________________________________
Database sequence:     |           |           |           |            | | 207
                       0          50         100         150          200

  Minus Strand HSPs:

 Score = 54 (19.0 bits), Expect = 9.5, Sum P(2) = 1.0
 Identities = 9/23 (39%), Positives = 14/23 (60%), Frame = -3

Query:   171 YNMLLDNEQQYMRPFFVWAIIIT 103
             +NM   N    + P FVW+++IT
Sbjct:   147 FNMKFKNMNLDLMPLFVWSVLIT 169

 Score = 32 (11.3 bits), Expect = 9.5, Sum P(2) = 1.0
 Identities = 5/12 (41%), Positives = 8/12 (66%), Frame = -1

Query:   230 IYNVHIILHIYV 195
             IYNV +  H ++
Sbjct:    31 IYNVIVTAHAFI 42


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.95

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.373   0.172   0.684  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.382   0.173   0.695  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.356   0.162   0.598  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.344   0.152   0.484  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.371   0.165   0.634  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.356   0.158   0.567  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0       89        78       10.  57 3  12 22  0.10    31
                                                    27  0.11    32
   +2      0       89        76       10.  57 3  12 22  0.10    31
                                                    27  0.10    32
   +1      0       89        77       10.  57 3  12 22  0.10    31
                                                    27  0.11    32
   -1      0       89        78       10.  57 3  12 22  0.10    31
                                                    27  0.11    32
   -2      0       89        78       10.  57 3  12 22  0.10    31
                                                    27  0.11    32
   -3      0       89        77       10.  57 3  12 22  0.10    31
                                                    27  0.11    32


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  37
  No. of states in DFA:  583 (57 KB)
  Total size of DFA:  134 KB (192 KB)
  Time to generate neighborhood:  0.01u 0.00s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  104.11u 1.01s 105.12t  Elapsed: 00:00:34
  Total cpu time:  104.14u 1.08s 105.22t  Elapsed: 00:00:34
  Start:  Wed Feb 14 23:33:05 2001   End:  Wed Feb 14 23:33:39 2001



Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000