R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|6553907|gb|AAF16573.1|AC012563_26 (AC012563) unknown protein [Arabidopsis
thaliana]
Length = 390
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 390
0 150 300
Plus Strand HSPs:
Score = 449 (158.1 bits), Expect = 1.6e-41, P = 1.6e-41
Identities = 84/99 (84%), Positives = 94/99 (94%), Frame = +2
Query: 5 PYITEFVVLESNSTFTGLPKPLVFNSNREQFKFVEPRLTYGTIGGRFKKGE-NPFVEEAY 181
PY+T+FV+LESNSTFTGLPKPLVF +R++FKF+EPRLTYG+IGGRFKKGE NPF EEAY
Sbjct: 136 PYVTQFVLLESNSTFTGLPKPLVFAGHRDEFKFIEPRLTYGSIGGRFKKGEKNPFYEEAY 195
Query: 182 QRVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRW 298
QR+ALDQLL+IAGITDDDLLIMSDVDEIPS HTINLLRW
Sbjct: 196 QRIALDQLLRIAGITDDDLLIMSDVDEIPSRHTINLLRW 234
>gi|7573473|emb|CAB87787.1| (AL163817) putative protein [Arabidopsis thaliana]
Length = 387
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 387
0 150 300
Plus Strand HSPs:
Score = 448 (157.7 bits), Expect = 2.0e-41, P = 2.0e-41
Identities = 82/98 (83%), Positives = 92/98 (93%), Frame = +2
Query: 5 PYITEFVVLESNSTFTGLPKPLVFNSNREQFKFVEPRLTYGTIGGRFKKGENPFVEEAYQ 184
PYIT+FV+LESNSTFTGLPKPLVFN NR +F+F EPRL+YG I GRFKKGENPFVEEAYQ
Sbjct: 134 PYITQFVILESNSTFTGLPKPLVFNGNRAKFEFAEPRLSYGNIAGRFKKGENPFVEEAYQ 193
Query: 185 RVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRW 298
R+ALDQL+++AGI +DDLLIMSDVDEIPSAHTINLLRW
Sbjct: 194 RIALDQLIRLAGIEEDDLLIMSDVDEIPSAHTINLLRW 231
>gi|4850383|gb|AAD31053.1|AC007357_2 (AC007357) Contains similarity to
gi|4417304 F15O11.7 putative beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase from Arabidopsis thaliana
BAC gb|AC006446
Length = 388
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 388
0 150 300
Plus Strand HSPs:
Score = 441 (155.2 bits), Expect = 1.1e-40, P = 1.1e-40
Identities = 81/98 (82%), Positives = 93/98 (94%), Frame = +2
Query: 5 PYITEFVVLESNSTFTGLPKPLVFNSNREQFKFVEPRLTYGTIGGRFKKGENPFVEEAYQ 184
PYIT+FV+LESN+TFTGLPKPLVF ++R++FKF+E RLTYGT+GGRF KG+NPF EEAYQ
Sbjct: 135 PYITQFVLLESNTTFTGLPKPLVFAAHRDEFKFIESRLTYGTVGGRFVKGQNPFYEEAYQ 194
Query: 185 RVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRW 298
RVALDQLL+IAGITDDDLL+MSDVDEIPS HTINLLRW
Sbjct: 195 RVALDQLLRIAGITDDDLLLMSDVDEIPSRHTINLLRW 232
>gi|6016720|gb|AAF01546.1|AC009325_16 (AC009325) hypothetical protein
[Arabidopsis thaliana]
Length = 388
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 388
0 150 300
Plus Strand HSPs:
Score = 422 (148.6 bits), Expect = 1.2e-38, P = 1.2e-38
Identities = 80/99 (80%), Positives = 90/99 (90%), Frame = +2
Query: 5 PYITEFVVLESNSTFTGLPKPLVFNSNREQ-FKFVEPRLTYGTIGGRFKKGENPFVEEAY 181
PYIT+FV+LESNSTFTGL K L F NRE+ FKFVEPRLTYG +GGRFKKGENPFVEE++
Sbjct: 134 PYITQFVLLESNSTFTGLSKQLAFADNREKNFKFVEPRLTYGNVGGRFKKGENPFVEESF 193
Query: 182 QRVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRW 298
QR+ALDQL+K+AGI +DDLLIMSDVDEIPS HTINLLRW
Sbjct: 194 QRLALDQLIKLAGIKEDDLLIMSDVDEIPSGHTINLLRW 232
>gi|4417304|gb|AAD20428.1| (AC006446) putative N-acetylglucosaminyltransferase
[Arabidopsis thaliana]
Length = 361
Frame 2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 361
0 150 300
Plus Strand HSPs:
Score = 286 (100.7 bits), Expect = 3.0e-24, P = 3.0e-24
Identities = 53/102 (51%), Positives = 77/102 (75%), Frame = +2
Query: 5 PYITEFVVLESNSTFTGLPKPLVFNSNREQFKFVEPRLTYGTIGGRFKK-G---ENPFVE 172
PY+++FV+LESN+TFTG+PKPL F+SN+E+F F E ++ +G G+ + G E+PF+
Sbjct: 105 PYVSKFVILESNTTFTGIPKPLFFDSNKERFAFAEGKIVHGVFPGKKRSTGQPYEDPFLL 164
Query: 173 EAYQRVALDQLLKIAGITDDDLLIMSDVDEIPSAHTINLLRW 298
E QRVA++ LL+ AG++D D +IMSD DEIPS HT+ L+W
Sbjct: 165 EGQQRVAMNWLLREAGVSDGDAVIMSDADEIPSPHTVKFLQW 206
>gi|4505165 ref|NP_002400.1| mannosyl(beta-1,4-)-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase
>gi|1169979|sp|Q09327|GNT3_HUMAN BETA-1,4-MANNOSYL-GLYCOPROTEIN
BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE
(N-GLYCOSYL-OLIGOSACCHARIDE-GLYCOPROTEIN
N-ACETYLGLUCOSAMINYLTRANSFERASE III)
(N-ACETYLGLUCOSAMINYLTRANSFERASE III) (GNT-III) (GLCNAC-T III)
>gi|484365|pir||JN0586 beta-1,4-mannosyl-glycoprotein beta-1,
4-N-acetylglucosaminyltransferase (EC 2.4.1.144) - human
>gi|398138|dbj|BAA02937.1| (D13789) N-acetylglucosaminyltransferase
III [Homo sapiens]
Length = 531
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 531
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00032, P = 0.00032
Identities = 29/100 (29%), Positives = 51/100 (51%), Frame = +2
Query: 11 ITEFVVLESNSTFTGLPKPLVFNS--NREQFKFVEPRLTYGTIGGRFKKG--ENPFVEEA 178
+ FVV ESN T G P+PL F F+++ ++ Y + F G ++ ++ +
Sbjct: 230 VDAFVVCESNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLD-HFPPGGRQDGWIADD 288
Query: 179 YQRVALDQ--LLKIAGITDDDLLIMSDVDEIPSAHTINLLR 295
Y R L Q + ++ + DD+ I+ D DEIP+ + L+
Sbjct: 289 YLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLK 329
>gi|5102565|emb|CAB45282.1| (AL022312) dJ1104E15.1 (mannosyl
(beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase)
[Homo sapiens]
Length = 531
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 531
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00032, P = 0.00032
Identities = 29/100 (29%), Positives = 51/100 (51%), Frame = +2
Query: 11 ITEFVVLESNSTFTGLPKPLVFNS--NREQFKFVEPRLTYGTIGGRFKKG--ENPFVEEA 178
+ FVV ESN T G P+PL F F+++ ++ Y + F G ++ ++ +
Sbjct: 230 VDAFVVCESNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLD-HFPPGGRQDGWIADD 288
Query: 179 YQRVALDQ--LLKIAGITDDDLLIMSDVDEIPSAHTINLLR 295
Y R L Q + ++ + DD+ I+ D DEIP+ + L+
Sbjct: 289 YLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLK 329
>gi|462192|sp|Q02527|GNT3_RAT BETA-1,4-MANNOSYL-GLYCOPROTEIN
BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE
(N-GLYCOSYL-OLIGOSACCHARIDE-GLYCOPROTEIN
N-ACETYLGLUCOSAMINYLTRANSFERASE III)
(N-ACETYLGLUCOSAMINYLTRANSFERASE III) (GNT-III) (GLCNAC-T III)
>gi|348318|pir||A43415 beta-1,4-mannosyl-glycoprotein beta-1,
4-N-acetylglucosaminyltransferase (EC 2.4.1.144) III - rat
>gi|220822|dbj|BAA01625.1| (D10852) N-acetylglucosaminyltransferase
III [Rattus norvegicus]
Length = 536
Frame 2 hits (HSPs): __________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 536
0 150 300 450
__________________
Annotated Domains:
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..5
Entrez Transmembrane region: SIGNAL-ANCHOR (TYP 6..21
Entrez Domain: LUMENAL, CATALYTIC (POTENTIAL). 22..536
Entrez Domain: PRO-RICH. 33..84
Entrez glycosylation site: POTENTIAL. 243
Entrez glycosylation site: POTENTIAL. 261
Entrez glycosylation site: POTENTIAL. 399
PRODOM PD018398: GNT3(3) 1..534
PROSITE EGF_1: EGF-like domain signature 1. 173..184
PROSITE EGF_2: EGF-like domain signature 2. 173..184
__________________
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00032, P = 0.00032
Identities = 29/100 (29%), Positives = 51/100 (51%), Frame = +2
Query: 11 ITEFVVLESNSTFTGLPKPLVFNS--NREQFKFVEPRLTYGTIGGRFKKG--ENPFVEEA 178
+ FVV ESN T G P+PL F F+++ ++ Y + F G ++ ++ +
Sbjct: 234 VDAFVVCESNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLD-HFPPGGRQDGWIADD 292
Query: 179 YQRVALDQ--LLKIAGITDDDLLIMSDVDEIPSAHTINLLR 295
Y R L Q + ++ + DD+ I+ D DEIP+ + L+
Sbjct: 293 YLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLK 333
>gi|6754686 ref|NP_034925.1| mannoside acetyl glucosaminyl transferase 3
>gi|1546058|gb|AAC53064.1| (U66844) N-acetylglucosaminyltransferase
III [Mus musculus]
Length = 538
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | 538
0 150 300 450
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00032, P = 0.00032
Identities = 29/100 (29%), Positives = 51/100 (51%), Frame = +2
Query: 11 ITEFVVLESNSTFTGLPKPLVFNS--NREQFKFVEPRLTYGTIGGRFKKG--ENPFVEEA 178
+ FVV ESN T G P+PL F F+++ ++ Y + F G ++ ++ +
Sbjct: 236 VDAFVVCESNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLD-HFPPGGRQDGWIADD 294
Query: 179 YQRVALDQ--LLKIAGITDDDLLIMSDVDEIPSAHTINLLR 295
Y R L Q + ++ + DD+ I+ D DEIP+ + L+
Sbjct: 295 YLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLK 335
>gi|1708005|sp|Q10470|GNT3_MOUSE BETA-1,4-MANNOSYL-GLYCOPROTEIN
BETA-1,4-N-ACETYLGLUCOSAMINYL-TRANSFERASE
(N-GLYCOSYL-OLIGOSACCHARIDE-GLYCOPROTEIN
N-ACETYLGLUCOSAMINYLTRANSFERASE III)
(N-ACETYLGLUCOSAMINYLTRANSFERASE III) (GNT-III) (GLCNAC-T III)
>gi|2117717|pir||JC4362 beta-1,4-mannosyl-glycoprotein beta-1,
4-N-acetylglucosaminyltransferase (EC 2.4.1.144) III - mouse
>gi|1008873|gb|AAB71422.1| (L39373) N-acetylglucosaminyltransferase
III [Mus musculus]
Length = 536
Frame 2 hits (HSPs): __________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 536
0 150 300 450
__________________
Annotated Domains:
Entrez Domain: CYTOPLASMIC (POTENTIAL). 1..5
Entrez Transmembrane region: SIGNAL-ANCHOR (TYP 6..21
Entrez Domain: LUMENAL, CATALYTIC (POTENTIAL). 22..536
Entrez Domain: PRO-RICH. 33..84
Entrez glycosylation site: POTENTIAL. 243
Entrez glycosylation site: POTENTIAL. 261
Entrez glycosylation site: POTENTIAL. 399
PRODOM PD018398: GNT3(3) 1..534
PROSITE EGF_1: EGF-like domain signature 1. 173..184
PROSITE EGF_2: EGF-like domain signature 2. 173..184
__________________
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.00068, P = 0.00068
Identities = 28/100 (28%), Positives = 51/100 (51%), Frame = +2
Query: 11 ITEFVVLESNSTFTGLPKPLVFNS--NREQFKFVEPRLTYGTIGGRFKKG--ENPFVEEA 178
+ FVV +SN T G P+PL F F+++ ++ Y + F G ++ ++ +
Sbjct: 234 VDAFVVCDSNFTAYGEPRPLKFREMLTNGTFEYIRHKVLYVFLD-HFPPGGRQDGWIADD 292
Query: 179 YQRVALDQ--LLKIAGITDDDLLIMSDVDEIPSAHTINLLR 295
Y R L Q + ++ + DD+ I+ D DEIP+ + L+
Sbjct: 293 YLRTFLTQDGVSRLRNLRPDDVFIIDDADEIPARDGVLFLK 333
>gi|466140|sp|P33660|YORU_CLOAB HYPOTHETICAL 9.6 KD PROTEIN IN SIGG 3'REGION
(ORF U) >gi|2127302|pir||I40623 hypothetical protein U -
Clostridium acetobutylicum >gi|312378|emb|CAA80618.1| (Z23079)
putative orfU [Clostridium acetobutylicum]
Length = 87
Frame 2 hits (HSPs): __________________________________________
Annotated Domains: _________________________________________
__________________________________________________
Database sequence: | | | | | | 87
0 20 40 60 80
__________________
Annotated Domains:
PRODOM PD019702: O31725(1) YORU(1) YMXH(1) 7..76
__________________
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 5.0, P = 0.99
Identities = 21/76 (27%), Positives = 40/76 (52%), Frame = +2
Query: 26 VLESNS-TFTGLPKPLVFNSNREQFKFVEPRLTYGTIGGRFKKGENPFVEEA-YQRVALD 199
V++ N+ T GL K L ++ E++K + L +GG F KG + ++ Q++ +D
Sbjct: 16 VIDINTGTKLGLIKDLKIDT--EEYKVISIILPGSKVGGWFSKGNDIEIDWTDIQKIGVD 73
Query: 200 QLLKIAGITDDDLLIMSD 253
+L + D+L + D
Sbjct: 74 VIL----VNGDNLFVNKD 87
>gi|4580028|gb|AAD24211.1|AF086638_1 (AF086638) CumA precursor [Pseudomonas
putida GB-1]
Length = 460
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 460
0 150 300 450
Plus Strand HSPs:
Score = 72 (25.3 bits), Expect = 7.7, P = 1.0
Identities = 19/49 (38%), Positives = 29/49 (59%), Frame = +3
Query: 51 PDCLSLWFSIAIGSSSNLLSRG*LMGPLVGDLRKEKTHLLKRRISV*HW 197
PD S W+ + SSS L RG L+GPL+ + R+ L +R +S+ +W
Sbjct: 130 PDAGSYWYHPHV-SSSEELGRG-LVGPLIVEEREPTGFLHERTLSLKNW 176
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.372 0.166 0.636
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.321 0.141 0.408
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.383 0.176 0.849
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.333 0.145 0.457
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.341 0.148 0.463
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.369 0.160 0.614
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 103 103 10. 67 3 12 22 0.11 32
28 0.11 34
+2 0 104 103 10. 67 3 12 22 0.11 32
28 0.11 34
+1 0 104 103 10. 67 3 12 22 0.11 32
28 0.11 34
-1 0 104 104 10. 67 3 12 22 0.11 32
29 0.11 34
-2 0 104 103 10. 67 3 12 22 0.11 32
28 0.11 34
-3 0 103 103 10. 67 3 12 22 0.11 32
28 0.11 34
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 12
No. of states in DFA: 590 (58 KB)
Total size of DFA: 147 KB (192 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 136.14u 1.11s 137.25t Elapsed: 00:01:01
Total cpu time: 136.19u 1.15s 137.34t Elapsed: 00:01:01
Start: Wed Feb 14 22:36:51 2001 End: Wed Feb 14 22:37:52 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000