BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= STr0788
(191 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|55822755|ref|YP_141196.1| hypothetical protein str0788 [... 297 2e-79
gi|55820840|ref|YP_139282.1| Conserved hypothetical, predic... 294 2e-78
gi|116627656|ref|YP_820275.1| Predicted membrane protein [S... 286 3e-76
gi|24379513|ref|NP_721468.1| hypothetical protein SMU.1076 ... 165 2e-39
gi|146318341|ref|YP_001198053.1| Predicted membrane protein... 162 1e-38
gi|81096357|ref|ZP_00874703.1| conserved hypothetical prote... 162 1e-38
gi|25011150|ref|NP_735545.1| hypothetical protein gbs1099 [... 157 3e-37
gi|22537223|ref|NP_688074.1| hypothetical protein SAG1065 [... 157 3e-37
gi|77413294|ref|ZP_00789490.1| putative membrane protein [S... 157 4e-37
gi|125718024|ref|YP_001035157.1| hypothetical protein SSA_1... 155 9e-37
gi|15901094|ref|NP_345698.1| membrane protein [Streptococcu... 154 4e-36
gi|148998662|ref|ZP_01826101.1| hypothetical protein CGSSp1... 153 5e-36
gi|50914272|ref|YP_060244.1| Integral membrane protein [Str... 142 7e-33
gi|21910399|ref|NP_664667.1| hypothetical protein SpyM3_086... 142 1e-32
gi|94990560|ref|YP_598660.1| Integral membrane protein [Str... 142 2e-32
gi|15675187|ref|NP_269361.1| hypothetical protein SPy_1223 ... 141 2e-32
gi|139473704|ref|YP_001128420.1| hypothetical protein SpyM5... 140 3e-32
gi|94992493|ref|YP_600592.1| Integral membrane protein [Str... 136 6e-31
gi|56807810|ref|ZP_00365658.1| COG4684: Predicted membrane ... 132 1e-29
gi|15672553|ref|NP_266727.1| hypothetical membrane protein ... 127 5e-28
gi|116511367|ref|YP_808583.1| Predicted membrane protein [L... 124 3e-27
gi|125623408|ref|YP_001031891.1| hypothetical protein llmg_... 124 4e-27
gi|157074980|gb|ABV09663.1| uncharacterized membrane protei... 122 1e-26
gi|148985128|ref|ZP_01818367.1| hypothetical protein CGSSp3... 104 3e-21
gi|69245035|ref|ZP_00603193.1| membrane protein, putative [... 101 2e-20
gi|153816040|ref|ZP_01968708.1| hypothetical protein RUMTOR... 100 5e-20
gi|29377141|ref|NP_816295.1| hypothetical protein EF2657 [E... 97 4e-19
gi|154505452|ref|ZP_02042190.1| hypothetical protein RUMGNA... 80 5e-14
gi|28377908|ref|NP_784800.1| integral membrane protein [Lac... 69 2e-10
gi|154500213|ref|ZP_02038251.1| hypothetical protein BACCAP... 69 2e-10
gi|153854219|ref|ZP_01995527.1| hypothetical protein DORLON... 65 2e-09
gi|15893623|ref|NP_346972.1| Uncharacterized membrane prote... 63 8e-09
gi|153953443|ref|YP_001394208.1| hypothetical protein CKL_0... 63 1e-08
gi|150015535|ref|YP_001307789.1| hypothetical protein Cbei_... 62 2e-08
gi|28210593|ref|NP_781537.1| hypothetical protein CTC00880 ... 59 2e-07
gi|118444418|ref|YP_878500.1| uncharacterized membrane prot... 58 3e-07
gi|145952354|ref|ZP_01801364.1| hypothetical protein CdifQ_... 56 1e-06
gi|126701182|ref|YP_001090079.1| hypothetical protein CD355... 55 2e-06
gi|150392211|ref|YP_001322260.1| membrane protein [Alkaliph... 53 1e-05
>gi|55822755|ref|YP_141196.1| hypothetical protein str0788 [Streptococcus thermophilus CNRZ1066]
gi|55738740|gb|AAV62381.1| hypothetical protein str0788 [Streptococcus thermophilus CNRZ1066]
Length = 191
Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats.
Identities = 191/191 (100%), Positives = 191/191 (100%)
Query: 1 MMNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIG 60
MMNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIG
Sbjct: 1 MMNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIG 60
Query: 61 AYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQ 120
AYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQ
Sbjct: 61 AYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQ 120
Query: 121 NRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTL 180
NRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTL
Sbjct: 121 NRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTL 180
Query: 181 SVTPMLLRLKN 191
SVTPMLLRLKN
Sbjct: 181 SVTPMLLRLKN 191
>gi|55820840|ref|YP_139282.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus thermophilus LMG 18311]
gi|55736825|gb|AAV60467.1| Conserved hypothetical, predicted membrane protein (TMS6)
[Streptococcus thermophilus LMG 18311]
Length = 191
Score = 294 bits (752), Expect = 2e-78, Method: Composition-based stats.
Identities = 188/191 (98%), Positives = 189/191 (98%)
Query: 1 MMNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIG 60
MMNKKNKANQTAQLALLIATMVVIEV SQTIFAAFALPIKPTLTHIPVIIASIVYGPKIG
Sbjct: 1 MMNKKNKANQTAQLALLIATMVVIEVLSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIG 60
Query: 61 AYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQ 120
AYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQ
Sbjct: 61 AYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQ 120
Query: 121 NRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTL 180
NRLGLTLSGVLGAFTNTFFVLLGIY LIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTL
Sbjct: 121 NRLGLTLSGVLGAFTNTFFVLLGIYFLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTL 180
Query: 181 SVTPMLLRLKN 191
S+TPMLLRLKN
Sbjct: 181 SITPMLLRLKN 191
>gi|116627656|ref|YP_820275.1| Predicted membrane protein [Streptococcus thermophilus LMD-9]
gi|116100933|gb|ABJ66079.1| Predicted membrane protein [Streptococcus thermophilus LMD-9]
Length = 190
Score = 286 bits (733), Expect = 3e-76, Method: Composition-based stats.
Identities = 184/189 (97%), Positives = 185/189 (97%)
Query: 2 MNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGA 61
MNKKNKAN TAQLALLIATMVVIEV SQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGA
Sbjct: 1 MNKKNKANPTAQLALLIATMVVIEVLSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGA 60
Query: 62 YLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQN 121
YLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQN
Sbjct: 61 YLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQN 120
Query: 122 RLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLS 181
RLGL LSGVLGAFTNTFFVLLGIY LIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLS
Sbjct: 121 RLGLMLSGVLGAFTNTFFVLLGIYFLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLS 180
Query: 182 VTPMLLRLK 190
+TPMLLRLK
Sbjct: 181 ITPMLLRLK 189
>gi|24379513|ref|NP_721468.1| hypothetical protein SMU.1076 [Streptococcus mutans UA159]
gi|24377453|gb|AAN58774.1|AE014945_11 putative membrane protein [Streptococcus mutans UA159]
Length = 190
Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 100/189 (52%), Positives = 138/189 (73%)
Query: 2 MNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGA 61
M + K++ A +A+ A M+VI + S IF + +PIKPT+ HIPVI+ASIVYGP+IG+
Sbjct: 1 MKNQKKSSNIAIIAVFFAVMLVIHLLSSLIFNLWPVPIKPTIVHIPVIVASIVYGPRIGS 60
Query: 62 YLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQN 121
LGG MGI+S++ NTI+ SYLFSPFV G + S +IA+VPRILIGIFPY+IYKL+QN
Sbjct: 61 ALGGLMGIISLINNTIILLPTSYLFSPFVPHGNFNSLLIALVPRILIGIFPYYIYKLMQN 120
Query: 122 RLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLS 181
R GL L+G +G+ TNT FVL GI++ + Y +T++ATI + NS+ E++I+ LLT
Sbjct: 121 RFGLLLAGAIGSATNTVFVLTGIFIFFSSVYGGNIQTMLATIISANSIIELIISALLTFL 180
Query: 182 VTPMLLRLK 190
+ P LL+LK
Sbjct: 181 IVPKLLKLK 189
>gi|146318341|ref|YP_001198053.1| Predicted membrane protein [Streptococcus suis 05ZYH33]
gi|146320535|ref|YP_001200246.1| Predicted membrane protein [Streptococcus suis 98HAH33]
gi|145689147|gb|ABP89653.1| Predicted membrane protein [Streptococcus suis 05ZYH33]
gi|145691341|gb|ABP91846.1| Predicted membrane protein [Streptococcus suis 98HAH33]
Length = 190
Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats.
Identities = 95/189 (50%), Positives = 134/189 (70%)
Query: 2 MNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGA 61
M KKNK+ Q A +A+ A M+VI + S IF +PIKPT+ HIPVIIASI+YGP++GA
Sbjct: 1 MMKKNKSTQIATIAIFFAVMIVINILSSIIFNILPVPIKPTIVHIPVIIASIIYGPRVGA 60
Query: 62 YLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQN 121
LG MG+MS+ NTI+ SYLFSPFVE G S +IA+VPRIL+GI PYF+YK ++N
Sbjct: 61 CLGALMGLMSMTHNTIILLPTSYLFSPFVENGNVYSIIIAVVPRILVGITPYFVYKWIKN 120
Query: 122 RLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLS 181
R GL ++G +G+ TNT FVL GI+ L + + + ++AT+ NS+AEM+I+ +LT +
Sbjct: 121 RKGLFIAGAIGSMTNTIFVLGGIFFLFSSVFDGNIQAMLATVLGTNSIAEMIISSVLTAA 180
Query: 182 VTPMLLRLK 190
+ P L +++
Sbjct: 181 LVPTLQKIQ 189
>gi|81096357|ref|ZP_00874703.1| conserved hypothetical protein [Streptococcus suis 89/1591]
gi|80977575|gb|EAP41112.1| conserved hypothetical protein [Streptococcus suis 89/1591]
Length = 189
Score = 162 bits (409), Expect = 1e-38, Method: Composition-based stats.
Identities = 94/187 (50%), Positives = 133/187 (71%)
Query: 4 KKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYL 63
KKNK+ Q A +A+ A M+VI + S IF +PIKPT+ HIPVIIASI+YGP++GA L
Sbjct: 2 KKNKSTQIATIAIFFAVMIVINILSSIIFNILPVPIKPTIVHIPVIIASIIYGPRVGACL 61
Query: 64 GGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRL 123
G MG+MS+ NTI+ SYLFSPFVE G S +IA+VPRIL+GI PYF+YK ++NR
Sbjct: 62 GALMGLMSMTHNTIILLPTSYLFSPFVENGNVYSIIIAVVPRILVGITPYFVYKWIKNRK 121
Query: 124 GLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVT 183
GL ++G +G+ TNT FVL GI+ L + + + ++AT+ NS+AEM+I+ +LT ++
Sbjct: 122 GLFIAGAIGSMTNTIFVLGGIFFLFSSVFDGNIQAMLATVLGTNSIAEMIISSVLTAALV 181
Query: 184 PMLLRLK 190
P L +++
Sbjct: 182 PTLQKIQ 188
>gi|25011150|ref|NP_735545.1| hypothetical protein gbs1099 [Streptococcus agalactiae NEM316]
gi|23095549|emb|CAD46758.1| Unknown [Streptococcus agalactiae NEM316]
Length = 190
Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats.
Identities = 100/190 (52%), Positives = 133/190 (70%)
Query: 2 MNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGA 61
M KKNK++ A +A+ A M+VI S IF+ + +PIKPTL HIPVIIASI YGP+IGA
Sbjct: 1 MKKKNKSSNIAIIAIFFAIMLVIHFLSSFIFSFWLIPIKPTLMHIPVIIASIAYGPRIGA 60
Query: 62 YLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQN 121
LG MG +S+ ++IV SYLFSPFVE G + S +IA+VPRILIGI PYF+YKLL N
Sbjct: 61 TLGALMGGISVANSSIVLLPTSYLFSPFVENGNFYSLIIALVPRILIGIIPYFVYKLLHN 120
Query: 122 RLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLS 181
R GL +SG +G+ TNT FVL GI++ + Y+ K ++A I + NS+AEMVIA ++
Sbjct: 121 RFGLAISGAIGSLTNTVFVLSGIFIFFSSTYNGNIKLMLAGIISSNSLAEMVIAAIIVYL 180
Query: 182 VTPMLLRLKN 191
P +L +K+
Sbjct: 181 TVPRILNIKH 190
>gi|22537223|ref|NP_688074.1| hypothetical protein SAG1065 [Streptococcus agalactiae 2603V/R]
gi|76787928|ref|YP_329775.1| hypothetical protein SAK_1154 [Streptococcus agalactiae A909]
gi|76798929|ref|ZP_00781133.1| conserved protein [Streptococcus agalactiae 18RS21]
gi|77405519|ref|ZP_00782611.1| membrane protein, putative [Streptococcus agalactiae H36B]
gi|77408684|ref|ZP_00785417.1| membrane protein, putative [Streptococcus agalactiae COH1]
gi|77410452|ref|ZP_00786813.1| membrane protein, putative [Streptococcus agalactiae CJB111]
gi|22534089|gb|AAM99946.1|AE014240_17 membrane protein, putative [Streptococcus agalactiae 2603V/R]
gi|76562985|gb|ABA45569.1| membrane protein, putative [Streptococcus agalactiae A909]
gi|76585720|gb|EAO62274.1| conserved protein [Streptococcus agalactiae 18RS21]
gi|77163400|gb|EAO74350.1| membrane protein, putative [Streptococcus agalactiae CJB111]
gi|77172732|gb|EAO75868.1| membrane protein, putative [Streptococcus agalactiae COH1]
gi|77175916|gb|EAO78693.1| membrane protein, putative [Streptococcus agalactiae H36B]
Length = 190
Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats.
Identities = 100/190 (52%), Positives = 133/190 (70%)
Query: 2 MNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGA 61
M KKNK++ A +A+ A M+VI S IF+ + +PIKPTL HIPVIIASI YGP+IGA
Sbjct: 1 MKKKNKSSNIAIIAIFFAIMLVIHFLSSFIFSFWLVPIKPTLMHIPVIIASIAYGPRIGA 60
Query: 62 YLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQN 121
LG MG +S+ ++IV SYLFSPFVE G + S +IA+VPRILIGI PYF+YKLL N
Sbjct: 61 TLGALMGGISVANSSIVLLPTSYLFSPFVENGNFYSLIIALVPRILIGIIPYFVYKLLHN 120
Query: 122 RLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLS 181
R GL +SG +G+ TNT FVL GI++ + Y+ K ++A I + NS+AEMVIA ++
Sbjct: 121 RFGLAISGAIGSLTNTVFVLSGIFIFFSSTYNGNIKLMLAGIISSNSLAEMVIAAIIVYL 180
Query: 182 VTPMLLRLKN 191
P +L +K+
Sbjct: 181 TVPRILNIKH 190
>gi|77413294|ref|ZP_00789490.1| putative membrane protein [Streptococcus agalactiae 515]
gi|77160681|gb|EAO71796.1| putative membrane protein [Streptococcus agalactiae 515]
Length = 190
Score = 157 bits (396), Expect = 4e-37, Method: Composition-based stats.
Identities = 99/190 (52%), Positives = 133/190 (70%)
Query: 2 MNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGA 61
M KKNK++ A +A+ A M+VI S IF+ + +PIKPTL HIPVIIASI YGP+IGA
Sbjct: 1 MKKKNKSSNIAIIAIFFAIMLVIHFLSSFIFSFWLVPIKPTLMHIPVIIASIAYGPRIGA 60
Query: 62 YLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQN 121
LG MG +S+ ++IV SYLFSPFVE G + S +IA+VPRILIGI PYF+YKLL +
Sbjct: 61 TLGALMGGISVANSSIVLLPTSYLFSPFVENGNFYSLIIALVPRILIGIIPYFVYKLLHD 120
Query: 122 RLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLS 181
R GL +SG +G+ TNT FVL GI++ + Y+ K ++A I + NS+AEMVIA ++
Sbjct: 121 RFGLAISGAIGSLTNTVFVLSGIFIFFSSTYNGNIKLMLAGIISSNSLAEMVIAAIIVYL 180
Query: 182 VTPMLLRLKN 191
P +L +K+
Sbjct: 181 TVPRILNIKH 190
>gi|125718024|ref|YP_001035157.1| hypothetical protein SSA_1203 [Streptococcus sanguinis SK36]
gi|125497941|gb|ABN44607.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 187
Score = 155 bits (393), Expect = 9e-37, Method: Composition-based stats.
Identities = 93/184 (50%), Positives = 133/184 (72%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K ++ AQ+A+ A M+V+ + S IF +PIKPT+ HIPVIIASI+YGPK+GA LGG
Sbjct: 3 KQSKIAQIAIFFAIMLVLHLLSSVIFNLLPVPIKPTIIHIPVIIASILYGPKVGAVLGGL 62
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MG +S++ NT+V SYLFSPFV G+ +S V+A++PRILIGI PYF+YK ++N++GL
Sbjct: 63 MGCISVITNTLVLLPTSYLFSPFVPNGSLSSLVVAMIPRILIGITPYFVYKAMKNKVGLL 122
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
++G +G+ TNT FVL GI+ L N Y K L+A I + NS+AE++I+ +LT ++ P L
Sbjct: 123 VAGSVGSATNTIFVLGGIFFLFANVYQGDIKALLAVILSANSIAELIISAILTATIIPAL 182
Query: 187 LRLK 190
+ K
Sbjct: 183 EKAK 186
>gi|15901094|ref|NP_345698.1| membrane protein [Streptococcus pneumoniae TIGR4]
gi|15903155|ref|NP_358705.1| hypothetical protein spr1112 [Streptococcus pneumoniae R6]
gi|111658444|ref|ZP_01409123.1| hypothetical protein SpneT_02000415 [Streptococcus pneumoniae
TIGR4]
gi|116515509|ref|YP_816561.1| hypothetical protein SPD_1090 [Streptococcus pneumoniae D39]
gi|148989254|ref|ZP_01820634.1| hypothetical protein CGSSp6BS73_03047 [Streptococcus pneumoniae
SP6-BS73]
gi|148993842|ref|ZP_01823244.1| hypothetical protein CGSSp9BS68_05601 [Streptococcus pneumoniae
SP9-BS68]
gi|149002600|ref|ZP_01827532.1| hypothetical protein CGSSp14BS69_04248 [Streptococcus pneumoniae
SP14-BS69]
gi|149007109|ref|ZP_01830778.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP18-BS74]
gi|149012283|ref|ZP_01833352.1| hypothetical protein CGSSp19BS75_05828 [Streptococcus pneumoniae
SP19-BS75]
gi|149019224|ref|ZP_01834586.1| hypothetical protein CGSSp23BS72_04705 [Streptococcus pneumoniae
SP23-BS72]
gi|14972714|gb|AAK75338.1| membrane protein [Streptococcus pneumoniae TIGR4]
gi|15458738|gb|AAK99915.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076085|gb|ABJ53805.1| membrane protein, putative [Streptococcus pneumoniae D39]
gi|147759211|gb|EDK66204.1| hypothetical protein CGSSp14BS69_04248 [Streptococcus pneumoniae
SP14-BS69]
gi|147761413|gb|EDK68379.1| excinuclease ABC subunit B [Streptococcus pneumoniae SP18-BS74]
gi|147763609|gb|EDK70544.1| hypothetical protein CGSSp19BS75_05828 [Streptococcus pneumoniae
SP19-BS75]
gi|147925232|gb|EDK76311.1| hypothetical protein CGSSp6BS73_03047 [Streptococcus pneumoniae
SP6-BS73]
gi|147927667|gb|EDK78692.1| hypothetical protein CGSSp9BS68_05601 [Streptococcus pneumoniae
SP9-BS68]
gi|147931094|gb|EDK82073.1| hypothetical protein CGSSp23BS72_04705 [Streptococcus pneumoniae
SP23-BS72]
Length = 187
Score = 154 bits (388), Expect = 4e-36, Method: Composition-based stats.
Identities = 98/184 (53%), Positives = 129/184 (70%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K + A +A+ ATM+VI S IF F PIKPT+ HIPVIIASI+YGP++G LG
Sbjct: 3 KRSNIAPIAIFFATMLVIHFLSSLIFNLFPFPIKPTIVHIPVIIASIIYGPRVGVTLGFL 62
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MG++S+ NTI SYLFSPFV G SA+IAIVPRILIG+ PY +YKL++N+ GL
Sbjct: 63 MGLLSLTVNTITILPTSYLFSPFVPNGNIYSAIIAIVPRILIGLTPYLVYKLMKNKTGLI 122
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
L+G LG+ TNT FVL GI+ L N Y+ + L+AT+ + NS+AE+VI+ +LTL++ P L
Sbjct: 123 LAGALGSLTNTIFVLGGIFFLFGNVYNGNIQLLLATVISTNSIAELVISAILTLAIVPRL 182
Query: 187 LRLK 190
LK
Sbjct: 183 QTLK 186
>gi|148998662|ref|ZP_01826101.1| hypothetical protein CGSSp11BS70_04056 [Streptococcus pneumoniae
SP11-BS70]
gi|147755499|gb|EDK62547.1| hypothetical protein CGSSp11BS70_04056 [Streptococcus pneumoniae
SP11-BS70]
Length = 187
Score = 153 bits (386), Expect = 5e-36, Method: Composition-based stats.
Identities = 98/184 (53%), Positives = 129/184 (70%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K + A +A+ ATM+VI S IF F PIKPT+ HIPVIIASI+YGP++G LG
Sbjct: 3 KRSNIAPIAIFFATMLVIHFLSSLIFNLFPFPIKPTIVHIPVIIASIIYGPRVGITLGFL 62
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MG++S+ NTI SYLFSPFV G SA+IAIVPRILIG+ PY +YKL++N+ GL
Sbjct: 63 MGLLSLTVNTITILPTSYLFSPFVPNGNIYSAIIAIVPRILIGLTPYLVYKLMKNKTGLI 122
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
L+G LG+ TNT FVL GI+ L N Y+ + L+AT+ + NS+AE+VI+ +LTL++ P L
Sbjct: 123 LAGALGSLTNTIFVLGGIFFLFGNVYNGNIQLLLATVISTNSIAELVISAILTLAIVPRL 182
Query: 187 LRLK 190
LK
Sbjct: 183 QTLK 186
>gi|50914272|ref|YP_060244.1| Integral membrane protein [Streptococcus pyogenes MGAS10394]
gi|71903574|ref|YP_280377.1| transporter [Streptococcus pyogenes MGAS6180]
gi|94988670|ref|YP_596771.1| integral membrane protein [Streptococcus pyogenes MGAS9429]
gi|94994482|ref|YP_602580.1| Integral membrane protein [Streptococcus pyogenes MGAS10750]
gi|50903346|gb|AAT87061.1| Integral membrane protein [Streptococcus pyogenes MGAS10394]
gi|71802669|gb|AAX72022.1| transporter [Streptococcus pyogenes MGAS6180]
gi|94542178|gb|ABF32227.1| integral membrane protein [Streptococcus pyogenes MGAS9429]
gi|94547990|gb|ABF38036.1| Integral membrane protein [Streptococcus pyogenes MGAS10750]
Length = 193
Score = 142 bits (359), Expect = 7e-33, Method: Composition-based stats.
Identities = 91/184 (49%), Positives = 131/184 (71%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K+ +++A+ A M+VI S +F + +PIKPTL HIPVIIAS++YGP+IGA LGG
Sbjct: 9 KSADISRIAIFFAIMLVIHFVSSLVFNIWPIPIKPTLVHIPVIIASVLYGPRIGAILGGL 68
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MGI+S++ NTI+ +YLFSPFV+ GT+AS +IAI+PRILIGI PY+ YKL+ N+ GL
Sbjct: 69 MGIISVITNTIILLPTNYLFSPFVDHGTFASLIIAIIPRILIGITPYYCYKLIPNQFGLI 128
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
+SG++G+ TNT FVL GI++ + K L+ I + N++ EM+I+ ++T + P L
Sbjct: 129 VSGIIGSLTNTIFVLSGIFIFFATVFDGNIKALLTAIISSNAIVEMIISAIITFVLIPTL 188
Query: 187 LRLK 190
RLK
Sbjct: 189 SRLK 192
>gi|21910399|ref|NP_664667.1| hypothetical protein SpyM3_0863 [Streptococcus pyogenes MGAS315]
gi|28895975|ref|NP_802325.1| hypothetical protein SPs1063 [Streptococcus pyogenes SSI-1]
gi|21904597|gb|AAM79470.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|28811225|dbj|BAC64158.1| hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 189
Score = 142 bits (357), Expect = 1e-32, Method: Composition-based stats.
Identities = 92/184 (50%), Positives = 131/184 (71%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K+ +++A+ A M+VI S IF + +PIKPTL HIPVIIAS++YGP+IGA LGG
Sbjct: 5 KSADISRIAIFFAIMLVIHFVSSLIFNIWPIPIKPTLVHIPVIIASVLYGPRIGAILGGL 64
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MGI+S++ NTI+ +YLFSPFV+ GT+AS +IAI+PRILIGI PY+ YKL+ N+ GL
Sbjct: 65 MGIISVITNTIILLPTNYLFSPFVDHGTFASLIIAIIPRILIGITPYYCYKLIPNQFGLI 124
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
+SG++G+ TNT FVL GI++ + K L+ I + N++ EM+I+ ++T + P L
Sbjct: 125 VSGIIGSLTNTIFVLSGIFIFFATVFDGNIKALLTAIISSNAIVEMIISAIITFVLIPTL 184
Query: 187 LRLK 190
RLK
Sbjct: 185 SRLK 188
>gi|94990560|ref|YP_598660.1| Integral membrane protein [Streptococcus pyogenes MGAS10270]
gi|94544068|gb|ABF34116.1| Integral membrane protein [Streptococcus pyogenes MGAS10270]
Length = 193
Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 91/184 (49%), Positives = 131/184 (71%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K+ +++A+ A M+VI S +F + +PIKPTL HIPVIIAS++YGP+IGA LGG
Sbjct: 9 KSADISRIAIFFAIMLVIHFVSSLVFNIWPIPIKPTLVHIPVIIASVLYGPRIGAILGGL 68
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MGI+S++ NTI+ +YLFSPFV+ GT+AS +IAI+PRILIGI PY+ YKL+ N+ GL
Sbjct: 69 MGIISVITNTIILLPTNYLFSPFVDHGTFASLIIAIIPRILIGITPYYCYKLIPNQFGLI 128
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
+SG++G+ TNT FVL GI++ + K L+ I + N++ EM+I+ ++T + P L
Sbjct: 129 VSGIIGSLTNTIFVLSGIFIFFATVFDGNIKALLTAIISSNAIVEMIISAIITFVLIPTL 188
Query: 187 LRLK 190
RLK
Sbjct: 189 SRLK 192
>gi|15675187|ref|NP_269361.1| hypothetical protein SPy_1223 [Streptococcus pyogenes M1 GAS]
gi|19746156|ref|NP_607292.1| hypothetical protein spyM18_1175 [Streptococcus pyogenes MGAS8232]
gi|71910750|ref|YP_282300.1| transporter [Streptococcus pyogenes MGAS5005]
gi|13622352|gb|AAK34082.1| hypothetical protein SPy_1223 [Streptococcus pyogenes M1 GAS]
gi|19748334|gb|AAL97791.1| hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|71853532|gb|AAZ51555.1| transporter [Streptococcus pyogenes MGAS5005]
Length = 189
Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats.
Identities = 91/184 (49%), Positives = 131/184 (71%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K+ +++A+ A M+VI S +F + +PIKPTL HIPVIIAS++YGP+IGA LGG
Sbjct: 5 KSADISRIAIFFAIMLVIHFVSSLVFNIWPIPIKPTLVHIPVIIASVLYGPRIGAILGGL 64
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MGI+S++ NTI+ +YLFSPFV+ GT+AS +IAI+PRILIGI PY+ YKL+ N+ GL
Sbjct: 65 MGIISVITNTIILLPTNYLFSPFVDHGTFASLIIAIIPRILIGITPYYCYKLIPNQFGLI 124
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
+SG++G+ TNT FVL GI++ + K L+ I + N++ EM+I+ ++T + P L
Sbjct: 125 VSGIIGSLTNTIFVLSGIFIFFATVFDGNIKALLTAIISSNAIVEMIISAIITFVLIPTL 184
Query: 187 LRLK 190
RLK
Sbjct: 185 SRLK 188
>gi|139473704|ref|YP_001128420.1| hypothetical protein SpyM50861 [Streptococcus pyogenes str.
Manfredo]
gi|134271951|emb|CAM30189.1| putative membrane protein [Streptococcus pyogenes str. Manfredo]
Length = 189
Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats.
Identities = 91/184 (49%), Positives = 130/184 (70%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K+ +++A+ A M+VI S +F + +PIKPTL HIPVIIAS++YGP+IGA LGG
Sbjct: 5 KSADISRIAIFFAIMLVIHFVSSLVFNIWPIPIKPTLVHIPVIIASVLYGPRIGAILGGL 64
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MGI+S++ NTI+ +YLFSPFV+ GT+AS +IAI+PRILIGI PY+ YKL+ N+ GL
Sbjct: 65 MGIISVITNTIILLPTNYLFSPFVDHGTFASLIIAIIPRILIGITPYYCYKLIPNQFGLI 124
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
+SG++G+ TNT FVL GI++ + K L+ I + N++ EM I+ ++T + P L
Sbjct: 125 VSGIIGSLTNTIFVLSGIFIFFATVFDGNIKALLTAIISSNAIVEMSISAIITFVLIPTL 184
Query: 187 LRLK 190
RLK
Sbjct: 185 SRLK 188
>gi|94992493|ref|YP_600592.1| Integral membrane protein [Streptococcus pyogenes MGAS2096]
gi|94546001|gb|ABF36048.1| Integral membrane protein [Streptococcus pyogenes MGAS2096]
Length = 191
Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats.
Identities = 86/174 (49%), Positives = 125/174 (71%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K+ +++A+ A M+VI S +F + +PIKPTL HIPVIIAS++YGP+IGA LGG
Sbjct: 9 KSADISRIAIFFAIMLVIHFVSSLVFNIWPIPIKPTLVHIPVIIASVLYGPRIGAILGGL 68
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MGI+S++ NTI+ +YLFSPFV+ GT+AS +IAI+PRILIGI PY+ YKL+ N+ GL
Sbjct: 69 MGIISVITNTIILLPTNYLFSPFVDHGTFASLIIAIIPRILIGITPYYCYKLIPNQFGLI 128
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTL 180
+SG++G+ TNT FVL GI++ + K L+ I + N++ EM+I+ ++T
Sbjct: 129 VSGIIGSLTNTIFVLSGIFIFFATVFDGNIKALLTAIISSNAIVEMIISAIITF 182
>gi|56807810|ref|ZP_00365658.1| COG4684: Predicted membrane protein [Streptococcus pyogenes M49
591]
Length = 189
Score = 132 bits (331), Expect = 1e-29, Method: Composition-based stats.
Identities = 92/184 (50%), Positives = 131/184 (71%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K+ +++A+ A M+VI S +F + +PIKPTL HIPVIIAS++YGP+IGA LGG
Sbjct: 5 KSADISRIAIFFAIMLVIHFVSSLVFNIWPIPIKPTLVHIPVIIASVLYGPRIGAILGGL 64
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MGI+SI+ NTI+ +YLFSPFV+ GT+AS +IAI+PRILIGI PY+ YKL+ N+ GL
Sbjct: 65 MGIISIITNTIILLPTNYLFSPFVDHGTFASLIIAIIPRILIGITPYYCYKLIPNQFGLI 124
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
+SG++G+ TNT FVL GI++ + K L+ I + N++ EM+I+ ++T + P L
Sbjct: 125 VSGIIGSLTNTIFVLSGIFIFFATVFDGNIKALLTAIISSNAIVEMIISAIITFVLIPTL 184
Query: 187 LRLK 190
RLK
Sbjct: 185 SRLK 188
>gi|15672553|ref|NP_266727.1| hypothetical membrane protein [Lactococcus lactis subsp. lactis
Il1403]
gi|12723461|gb|AAK04669.1|AE006291_3 hypothetical membrane protein [Lactococcus lactis subsp. lactis
Il1403]
Length = 196
Score = 127 bits (318), Expect = 5e-28, Method: Composition-based stats.
Identities = 87/193 (45%), Positives = 125/193 (64%), Gaps = 7/193 (3%)
Query: 4 KKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYL 63
KK+KA+ A L++ IA MVV+++ SQ I++ + LPI PTL HIPVII SIV G + GA+L
Sbjct: 2 KKSKASDVAILSIFIAIMVVVQLLSQIIYSVWPLPIVPTLLHIPVIIGSIVLGVRKGAFL 61
Query: 64 GGFMGIMSIVRNTIVYTVGSYLFSPFV------EGGTWASAVIAIVPRILIGIFPYFIYK 117
G MG++S++ +TIV S++FSP G WA VIAIVPR+L+GI P +Y+
Sbjct: 62 GLVMGLISVINSTIVTLPSSFMFSPLQPVPGTNHGSIWA-LVIAIVPRVLVGILPALVYR 120
Query: 118 LLQNRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGL 177
L QNR G L+ +G TNT VL I+L + L+A+I T NS+AE++IA +
Sbjct: 121 LAQNRFGAGLAAFVGTATNTLLVLSFIFLFFHDVTKQTFGALLASIITGNSIAEVIIAVI 180
Query: 178 LTLSVTPMLLRLK 190
LT+++ P L + +
Sbjct: 181 LTMAIVPALSKAR 193
>gi|116511367|ref|YP_808583.1| Predicted membrane protein [Lactococcus lactis subsp. cremoris
SK11]
gi|116107021|gb|ABJ72161.1| Predicted membrane protein [Lactococcus lactis subsp. cremoris
SK11]
Length = 196
Score = 124 bits (310), Expect = 3e-27, Method: Composition-based stats.
Identities = 83/193 (43%), Positives = 117/193 (60%), Gaps = 5/193 (2%)
Query: 4 KKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYL 63
KK+KA+ A LA+ IA MVV+++F+Q + + P+KPTL H+PVII SI+ G + GA+L
Sbjct: 2 KKSKASDVAILAIFIAIMVVVQLFTQFVINVWPFPVKPTLLHLPVIIGSIILGWRKGAFL 61
Query: 64 GGFMGIMSIVRNTIVYTVGSYLFSPF-----VEGGTWASAVIAIVPRILIGIFPYFIYKL 118
G G++S V TIV T S+LFSPF G+ IA +PRIL+GI PYF+YK+
Sbjct: 62 GLVWGLISFVTATIVTTPTSFLFSPFQPVIGTHHGSPWGLFIAFIPRILVGILPYFVYKI 121
Query: 119 LQNRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLL 178
NRLG L+ G TNT VL I+L + L+ I NS+ E++IA +L
Sbjct: 122 ANNRLGAGLAAFAGTATNTILVLTSIFLFFGSTLKWSLSYLLGAIVATNSLTEVIIAVIL 181
Query: 179 TLSVTPMLLRLKN 191
T ++ P L + +N
Sbjct: 182 TTAIVPALTKARN 194
>gi|125623408|ref|YP_001031891.1| hypothetical protein llmg_0542 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124492216|emb|CAL97145.1| putative membrane protein [Lactococcus lactis subsp. cremoris
MG1363]
Length = 196
Score = 124 bits (310), Expect = 4e-27, Method: Composition-based stats.
Identities = 83/193 (43%), Positives = 117/193 (60%), Gaps = 5/193 (2%)
Query: 4 KKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYL 63
KK+KA+ A LA+ IA MVV+++F+Q + + P+KPTL H+PVII SI+ G + GA+L
Sbjct: 2 KKSKASDVAILAIFIAIMVVVQLFTQFVINVWPFPVKPTLLHLPVIIGSIILGWRKGAFL 61
Query: 64 GGFMGIMSIVRNTIVYTVGSYLFSPF-----VEGGTWASAVIAIVPRILIGIFPYFIYKL 118
G G++S V TIV T S+LFSPF G+ IA +PRIL+GI PYF+YK+
Sbjct: 62 GLVWGLISFVTATIVTTPTSFLFSPFQPVIGTHHGSPWGLFIAFIPRILVGILPYFVYKI 121
Query: 119 LQNRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLL 178
NRLG L+ G TNT VL I+L + L+ I NS+ E++IA +L
Sbjct: 122 ANNRLGAGLAAFAGTATNTVLVLTSIFLFFGSTLKWSLSYLLGAIVATNSLTEVIIAVIL 181
Query: 179 TLSVTPMLLRLKN 191
T ++ P L + +N
Sbjct: 182 TTAIVPALTKARN 194
>gi|157074980|gb|ABV09663.1| uncharacterized membrane protein [Streptococcus gordonii str.
Challis substr. CH1]
Length = 187
Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats.
Identities = 88/184 (47%), Positives = 129/184 (70%)
Query: 7 KANQTAQLALLIATMVVIEVFSQTIFAAFALPIKPTLTHIPVIIASIVYGPKIGAYLGGF 66
K ++ AQ+A+ A M+V+ + S IF +PIKPT+ HIP+IIASI+YGP++G LG
Sbjct: 3 KQSKIAQIAIFFAIMLVLHLLSSVIFNLLPVPIKPTIIHIPIIIASILYGPQVGMVLGFL 62
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MG +S++ NTIV SYLFSPFV G S +IA+VPRILIG+ PY +YK+L N+LGL
Sbjct: 63 MGCISVITNTIVLIPSSYLFSPFVPNGNLHSLMIAMVPRILIGLTPYLVYKVLHNKLGLA 122
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
++G +G+ TNT FVL GI+ L N Y + ++A + + NS+AE++I+ +LT ++ P L
Sbjct: 123 IAGAVGSATNTIFVLGGIFFLFSNVYQGSIQAMLAVVLSANSIAELLISVVLTTTIVPAL 182
Query: 187 LRLK 190
++K
Sbjct: 183 EKVK 186
>gi|148985128|ref|ZP_01818367.1| hypothetical protein CGSSp3BS71_02058 [Streptococcus pneumoniae
SP3-BS71]
gi|147922573|gb|EDK73691.1| hypothetical protein CGSSp3BS71_02058 [Streptococcus pneumoniae
SP3-BS71]
Length = 125
Score = 104 bits (259), Expect = 3e-21, Method: Composition-based stats.
Identities = 66/124 (53%), Positives = 89/124 (71%)
Query: 67 MGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLT 126
MG++S+ NTI SYLFSPFV G SA+IAIVPRILIG+ PY +YKL++N+ GL
Sbjct: 1 MGLLSLTVNTITILPTSYLFSPFVPNGNIYSAIIAIVPRILIGLTPYLVYKLMKNKTGLI 60
Query: 127 LSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
L+G LG+ TNT FVL GI+ L N Y+ + L+AT+ + NS+AE+VI+ +LTL++ P L
Sbjct: 61 LAGALGSLTNTIFVLGGIFFLFGNVYNGNIQLLLATVISTNSIAELVISAILTLAIVPRL 120
Query: 187 LRLK 190
LK
Sbjct: 121 QTLK 124
>gi|69245035|ref|ZP_00603193.1| membrane protein, putative [Enterococcus faecium DO]
gi|68196036|gb|EAN10468.1| membrane protein, putative [Enterococcus faecium DO]
Length = 210
Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats.
Identities = 73/171 (42%), Positives = 108/171 (63%), Gaps = 21/171 (12%)
Query: 38 PIKPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFV-----EG 92
PI T HIPVIIASIV GP++GA+LGG G++S++R+T++ T S++FSPF+ E
Sbjct: 32 PINATTMHIPVIIASIVLGPRLGAFLGGTFGLISMIRSTVIQTPLSFVFSPFIPVIGTEH 91
Query: 93 GTWASAVIAIVPRILIGIFPYFIYKLLQ-------NRLGLTLSGVLGAFTNTFFVLLGIY 145
G+W + +IA +PRILIG+ PYF+YK L+ + + L L+G+ G+ TNT V+ IY
Sbjct: 92 GSWKALLIAFIPRILIGVVPYFVYKGLRKLMKQKADSVSLFLAGLSGSLTNTILVMNMIY 151
Query: 146 LLIPNFYS--------AGGKTLMATIFTINSVAEMVIAGLLTLSVTPMLLR 188
L Y+ A ++A IFT + + E ++AGL T +V +LLR
Sbjct: 152 FLFQQDYAKVIGTNLNAVYSAILAVIFT-SGIPEGIVAGLATAAVCNVLLR 201
>gi|153816040|ref|ZP_01968708.1| hypothetical protein RUMTOR_02286 [Ruminococcus torques ATCC 27756]
gi|145846687|gb|EDK23605.1| hypothetical protein RUMTOR_02286 [Ruminococcus torques ATCC 27756]
Length = 271
Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats.
Identities = 72/218 (33%), Positives = 109/218 (50%), Gaps = 32/218 (14%)
Query: 3 NKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPI---------KPTLTHIPVIIASI 53
+++ Q + +MV + +F I P + T+ HIPVIIAS+
Sbjct: 39 DRQTSGKQRSSSKFSTMSMVQVAIFGAVICVMAFTPFLGYIPLGFTRATIIHIPVIIASL 98
Query: 54 VYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVE----GGTWASAVIAIVPRILIG 109
+ GPK G LG G+ S + NT+ T S++F+PF G W S +I +PRIL+G
Sbjct: 99 LMGPKKGGALGFLFGLTSFINNTMNPTPTSFVFTPFYSIAGVSGGWGSVIICFLPRILVG 158
Query: 110 IFPYFIYKLL------------QNRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYS---- 153
I PY++YKL+ + +GL +GV GA TNT V+ I+L Y+
Sbjct: 159 IIPYYVYKLIIRFSNEKTKKTGVSSIGLVTAGVAGAMTNTLLVMNLIFLFFREAYASANN 218
Query: 154 ---AGGKTLMATIFTINSVAEMVIAGLLTLSVTPMLLR 188
+G T + +I IN V E ++AG+LTL + LL+
Sbjct: 219 VAVSGVYTFILSIIGINGVPEAIVAGVLTLCIGRALLK 256
>gi|29377141|ref|NP_816295.1| hypothetical protein EF2657 [Enterococcus faecalis V583]
gi|29344607|gb|AAO82365.1| membrane protein, putative [Enterococcus faecalis V583]
Length = 211
Score = 97.1 bits (240), Expect = 4e-19, Method: Composition-based stats.
Identities = 73/171 (42%), Positives = 103/171 (60%), Gaps = 19/171 (11%)
Query: 38 PIKPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFV-----EG 92
P+ T HIPVII SIV GPKIG+ LGG GI+S+++NT T S++FSPF+ +
Sbjct: 32 PLNSTTMHIPVIIGSIVLGPKIGSMLGGTFGIISLIKNTTAPTPLSFVFSPFIPVIGTDH 91
Query: 93 GTWASAVIAIVPRILIGIFPYFIYKLLQ-------NRLGLTLSGVLGAFTNTFFVLLGIY 145
G+W + +I ++PRILIG+ PYF YK L + L ++GVLG+ TNT V+ IY
Sbjct: 92 GSWKALLIVLIPRILIGVVPYFAYKWLNKLTKEKAQPVSLFVAGVLGSATNTILVMNMIY 151
Query: 146 LLIPNFYS-----AGGKTLMATIFTINS--VAEMVIAGLLTLSVTPMLLRL 189
L + Y+ AG +A I TI S V E ++AG+ ++ +LLRL
Sbjct: 152 FLFNSAYAEIIGKAGTAVYLAIIATIFSSGVPEALVAGVAASAIASVLLRL 202
>gi|154505452|ref|ZP_02042190.1| hypothetical protein RUMGNA_02981 [Ruminococcus gnavus ATCC 29149]
gi|153794245|gb|EDN76665.1| hypothetical protein RUMGNA_02981 [Ruminococcus gnavus ATCC 29149]
Length = 211
Score = 80.5 bits (197), Expect = 5e-14, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 99/168 (58%), Gaps = 19/168 (11%)
Query: 40 KPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWA--- 96
+ T+ HIPVI+AS++ GPK GA LG G+ S + NT+ TV S++F+PF G ++
Sbjct: 29 RATIIHIPVILASLLMGPKTGALLGLLFGLTSFINNTVNPTVTSFVFTPFYSMGEFSGGI 88
Query: 97 -SAVIAIVPRILIGIFPYFIYKLLQ--------NRLGLTLSGVLGAFTNTFFVLLGIYLL 147
S +I VPRIL G+ P++IYKL++ +++GL L+GV G+ TNT V+ IYL
Sbjct: 89 GSVIICFVPRILTGVVPHYIYKLVKKCSKSTGVSKIGLILAGVGGSLTNTLLVMNLIYLF 148
Query: 148 IPNFYSAGGKT-------LMATIFTINSVAEMVIAGLLTLSVTPMLLR 188
+ Y+A + +I IN V E ++AG+LT + L++
Sbjct: 149 FKDTYAAANGVAVKAVYGFILSIIGINGVPEAIVAGVLTALIGRTLMK 196
>gi|28377908|ref|NP_784800.1| integral membrane protein [Lactobacillus plantarum WCFS1]
gi|28270742|emb|CAD63647.1| integral membrane protein [Lactobacillus plantarum WCFS1]
Length = 194
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 67/202 (33%), Positives = 110/202 (54%), Gaps = 21/202 (10%)
Query: 1 MMNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALP-IKPTLTHIPVIIASIVYGPKI 59
MM +++ A + LA+L+A +++ + F LP + T H+ VI+A++V GP+
Sbjct: 1 MMQRRSNAYHISVLAVLMAIVIIQNIVP--FFGYIPLPGLSITTIHVTVILAAVVLGPRD 58
Query: 60 GAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLL 119
GA +GG GI++ +R + + +P V + + +I+++PRIL+G+ +++
Sbjct: 59 GAIIGGAWGIIAWIR---AFVAPTSPLAPIV----FTNPLISVIPRILVGLIAGWVFIWF 111
Query: 120 QNR----LGLTLSGVLGAFTNTFFVLLGIYLLIPN----FYSAGGKTLMATIFTI---NS 168
Q R LG+TL+GV GA TNT VL I LL + FY LM + TI N
Sbjct: 112 QKRHQKVLGMTLAGVAGALTNTILVLGLIGLLYSHQAAGFYQVNLSKLMPYLLTIVASNG 171
Query: 169 VAEMVIAGLLTLSVTPMLLRLK 190
+ E ++AG+LT + LLR K
Sbjct: 172 IPEAILAGILTPLIGTPLLRFK 193
>gi|154500213|ref|ZP_02038251.1| hypothetical protein BACCAP_03877 [Bacteroides capillosus ATCC
29799]
gi|150270945|gb|EDM98219.1| hypothetical protein BACCAP_03877 [Bacteroides capillosus ATCC
29799]
Length = 211
Score = 68.6 bits (166), Expect = 2e-10, Method: Composition-based stats.
Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 20/206 (9%)
Query: 1 MMNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPI-KPTLTHIPVIIASIVYGPKI 59
M N++ A A +A++ A +V++ + T L + K T HIPVI+ +I++GP
Sbjct: 1 MKNRRKDAKWMAGVAMMAAIVVLL---ANTPLGMIPLVVTKATTVHIPVILGAILFGPLA 57
Query: 60 GAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWASAV----IAIVPRILIGIFPYFI 115
G LGG GI S++ NT + S+ FSPF+ A+ +A+ RILIG+ ++
Sbjct: 58 GGILGGVFGICSVIINTFTPALTSFAFSPFMSTTGLPGAIKALWVAVGCRILIGVVAGWL 117
Query: 116 YKLLQNR-----LGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKT-------LMATI 163
+K L + L++ G G+ NT V+ I+LL Y+ + L+ T
Sbjct: 118 WKALSHTRVNSWTALSIVGFTGSMVNTVTVMGSIFLLFTQQYAQAKEVALEAVSGLILTT 177
Query: 164 FTINSVAEMVIAGLLTLSVTPMLLRL 189
+N + E ++A +L + LLR
Sbjct: 178 VVVNGIPEAIVATVLVAVIGKNLLRF 203
>gi|153854219|ref|ZP_01995527.1| hypothetical protein DORLON_01519 [Dorea longicatena DSM 13814]
gi|149753268|gb|EDM63199.1| hypothetical protein DORLON_01519 [Dorea longicatena DSM 13814]
Length = 217
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 56/174 (32%), Positives = 91/174 (52%), Gaps = 13/174 (7%)
Query: 1 MMNKKNKANQTAQLALLIATMVVIEVFSQTIFAAFALPI-KPTLTHIPVIIASIVYGPKI 59
M KK+ + +AL+ A ++V+ + T LPI K T HIPVI+ +I+ GP
Sbjct: 1 MKTKKHDTSWMVSVALMAAIVIVL---ANTPLGMIQLPIIKATTVHIPVILGAILLGPAA 57
Query: 60 GAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEG----GTWASAVIAIVPRILIGIFPYFI 115
GA LGG GI S++ NT+ T+ S+ FSPF+ G + I++ RILIG+ ++
Sbjct: 58 GAILGGVFGICSLISNTMAPTLLSFAFSPFMSTTGIPGAIKAVWISVGCRILIGVAAGWL 117
Query: 116 YKL-----LQNRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYSAGGKTLMATIF 164
+ L + + + L + G GA NT V+ IY+L Y+ ++ ++
Sbjct: 118 WILFSKLKVNSIIALPIVGFAGAMVNTITVMGSIYILFAKQYAEAKDVAVSAVW 171
>gi|15893623|ref|NP_346972.1| Uncharacterized membrane protein, homolog of YPAA B.subtilis
[Clostridium acetobutylicum ATCC 824]
gi|15023177|gb|AAK78312.1|AE007548_2 Uncharacterized membrane protein, homolog of YPAA B.subtilis
[Clostridium acetobutylicum ATCC 824]
Length = 192
Score = 63.2 bits (152), Expect = 8e-09, Method: Composition-based stats.
Identities = 58/184 (31%), Positives = 98/184 (53%), Gaps = 20/184 (10%)
Query: 10 QTAQLALLIATMVVIEVFSQTIFAAFALPI-KPTLTHIPVIIASIVYGPKIGAYLGGFMG 68
+T QL ++ + V T + LPI K T+ HIPVII +I+ GP +G +G G
Sbjct: 8 KTRQLTVIGLLSAISIVLGLTGYGFIPLPIAKATIMHIPVIIGAILEGPIVGVAIGLIFG 67
Query: 69 IMSIVRNTIVYTVGSYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNR---LGL 125
+ SI++N + SP + + + +++++PR+LIG+ Y+ Y L++ + + +
Sbjct: 68 VFSIIQN---------IMSPNLLSFAYMNPLVSVLPRVLIGVTSYYAYTLIKAKNQSIKI 118
Query: 126 TLSGVLGAFTNTFFVLLGIYLLIPNFYSAG----GKTLMATIFTI---NSVAEMVIAGLL 178
+S V+G TNTF VL IY+L Y+ K ATI+ + N E +I+ L+
Sbjct: 119 GISAVVGTLTNTFGVLTMIYVLYAARYATAKHISAKAAAATIYGVAVTNGTCEAIISVLI 178
Query: 179 TLSV 182
T+ V
Sbjct: 179 TIPV 182
>gi|153953443|ref|YP_001394208.1| hypothetical protein CKL_0807 [Clostridium kluyveri DSM 555]
gi|146346324|gb|EDK32860.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
Length = 197
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/166 (30%), Positives = 95/166 (57%), Gaps = 22/166 (13%)
Query: 38 PIKPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWAS 97
P+K T+ H+PVII +I+ GP +GA +G GI SI+++ T S+ F +
Sbjct: 41 PVKATIMHVPVIIGAILEGPLVGAMVGLIFGIFSIIQSITAPTPVSFAF---------IN 91
Query: 98 AVIAIVPRILIGIFPYFIYKLLQNR----LGLTLSGVLGAFTNTFFVLLGIYLLIPNFYS 153
+++++PRILIG+ Y++YK + N+ + + ++ +G+ NT VL +YL+ Y+
Sbjct: 92 PLVSVLPRILIGLASYYLYKAISNKNRKVIPMGIAAAVGSMVNTVGVLGMMYLIYLEPYA 151
Query: 154 --------AGGKTLMATIFTINSVAEMVIAGLLTLSVTPMLLRLKN 191
A K ++A FT N + EM+++ ++T+SV + ++++
Sbjct: 152 KALNISLGAAKKGILAVAFT-NGIPEMILSVIITVSVITAVNKIRH 196
>gi|150015535|ref|YP_001307789.1| hypothetical protein Cbei_0646 [Clostridium beijerinckii NCIMB
8052]
gi|149902000|gb|ABR32833.1| conserved hypothetical protein [Clostridium beijerinckii NCIMB
8052]
Length = 198
Score = 61.6 bits (148), Expect = 2e-08, Method: Composition-based stats.
Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 21/165 (12%)
Query: 38 PIKPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWAS 97
P+K T+ HIPVII +IV GP +G+ +G G+ S+ +N S++F W +
Sbjct: 40 PVKATIMHIPVIIGAIVEGPIVGSLVGLVFGLFSMYQNFTAPGPTSFIF--------W-N 90
Query: 98 AVIAIVPRILIGIFPYFIYKLLQNR-----LGLTLSGVLGAFTNTFFVLLGIYLLIPNFY 152
+IA+VPR+LIGI Y++Y LL+ R + + ++ + NT VL Y+ Y
Sbjct: 91 PIIALVPRVLIGIVAYYVYILLRKRFKNQSISIAIASICATLINTIGVLGLTYVFYLERY 150
Query: 153 SAGGK-------TLMATIFTINSVAEMVIAGLLTLSVTPMLLRLK 190
SA K +ATI N V E +++ ++++ V + R+K
Sbjct: 151 SAILKINPQTAGIAIATIGLTNGVPEAIVSAVISVPVIVAIFRIK 195
>gi|28210593|ref|NP_781537.1| hypothetical protein CTC00880 [Clostridium tetani E88]
gi|28203031|gb|AAO35474.1| conserved protein [Clostridium tetani E88]
Length = 222
Score = 58.5 bits (140), Expect = 2e-07, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 38 PIKPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWAS 97
P+ T+ H+PVII +I+ GP +GA +G GI S++ T S++F +
Sbjct: 68 PVNATIMHVPVIIGAILEGPVVGASIGFIFGIFSVINAMTNSTPLSFVF---------MN 118
Query: 98 AVIAIVPRILIGIFPYFIYKLLQNRLG---LTLSGVLGAFTNTFFVLLGIYLL------- 147
+++++PRILIGI Y+ Y+L + + L V+G+ NTF VL +YL+
Sbjct: 119 PIVSVLPRILIGIISYYCYRLAFVKFSSFKIALGAVVGSLINTFGVLGLMYLIYVEKYAK 178
Query: 148 IPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPMLLRLK 190
I N K + I N + E +++ + + V + +L+
Sbjct: 179 IFNISVPAAKKAIFGIGVANGIPEAILSAAIAIPVVTAIKKLR 221
>gi|118444418|ref|YP_878500.1| uncharacterized membrane protein [Clostridium novyi NT]
gi|118134874|gb|ABK61918.1| uncharacterized membrane protein [Clostridium novyi NT]
Length = 198
Score = 57.8 bits (138), Expect = 3e-07, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 38 PIKPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWAS 97
P+ T+ HIPVI+ S++ GP +G LG G S+ R T S++F +
Sbjct: 41 PVNLTIMHIPVIVGSLIEGPVVGGMLGLLFGAFSMFRAINTPTPVSFIF---------LN 91
Query: 98 AVIAIVPRILIGIFPYFIYKLLQ---NRLGLTLSGVLGAFTNTFFVLLGIYLLIPNFYS 153
+++I+PRILIG+ PY +YK L+ +++ + ++ +G+FTNT V+ +Y L Y+
Sbjct: 92 PIVSILPRILIGVTPYLVYKYLKIRHDKVRIGIAAAVGSFTNTLGVMGLMYALYLKQYA 150
>gi|145952354|ref|ZP_01801364.1| hypothetical protein CdifQ_04004100 [Clostridium difficile
QCD-32g58]
Length = 205
Score = 55.8 bits (133), Expect = 1e-06, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 21/136 (15%)
Query: 38 PIKPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWAS 97
P K T+ HIPVII +I+ GP +GA +G GI S++ TV S++F +
Sbjct: 50 PTKATIMHIPVIIGAIMEGPIVGAAIGFIFGISSLLNAITNPTVTSFVF---------IN 100
Query: 98 AVIAIVPRILIGIFPYFIYKLL---QNRLGLT--LSGVLGAFTNTFFVLLGIYLLIPNFY 152
+++I+PR++IG+ Y++Y+L+ N++ ++ ++G +G+ NT VL IY+L + Y
Sbjct: 101 PLVSILPRVMIGVLAYYVYQLIIKATNKVYISGLITGAIGSLLNTAGVLGMIYVLYADKY 160
Query: 153 -------SAGGKTLMA 161
+ GK +MA
Sbjct: 161 LHAMGKSGSAGKVIMA 176
>gi|126701182|ref|YP_001090079.1| hypothetical protein CD3556 [Clostridium difficile 630]
gi|115252619|emb|CAJ70462.1| putative membrane protein [Clostridium difficile 630]
Length = 196
Score = 55.1 bits (131), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 21/136 (15%)
Query: 38 PIKPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVGSYLFSPFVEGGTWAS 97
P K T+ HIPVII +I+ GP +GA +G GI S++ TV S++F +
Sbjct: 41 PTKATIMHIPVIIGAIMEGPIVGAAIGFIFGISSLLNAITNPTVTSFVF---------IN 91
Query: 98 AVIAIVPRILIGIFPYFIYKLL---QNRLGLT--LSGVLGAFTNTFFVLLGIYLLIPNFY 152
+++I+PR++IG+ Y++Y+L+ N++ ++ ++G +G+ NT VL IY+L + Y
Sbjct: 92 PLVSILPRVMIGVLAYYVYQLIIKATNKVYISGLITGAIGSLLNTAGVLGMIYVLYADKY 151
Query: 153 -------SAGGKTLMA 161
+ GK +MA
Sbjct: 152 LHAMGKSGSAGKVIMA 167
>gi|150392211|ref|YP_001322260.1| membrane protein [Alkaliphilus metalliredigens QYMF]
gi|149952073|gb|ABR50601.1| membrane protein [Alkaliphilus metalliredigens QYMF]
Length = 174
Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats.
Identities = 54/164 (32%), Positives = 84/164 (51%), Gaps = 26/164 (15%)
Query: 26 VFSQTIFAAFALPI---KPTLTHIPVIIASIVYGPKIGAYLGGFMGIMSIVRNTIVYTVG 82
V S T LPI T HIPVIIA+IV GPK+ ++G G S +R
Sbjct: 24 VLSMTPLGYIPLPILGVNATTMHIPVIIAAIVAGPKVATFVGLIFGGSSFLRAN------ 77
Query: 83 SYLFSPFVEGGTWASAVIAIVPRILIGIFPYFIYKLLQNRLGLTLSGVLGAFTNTFFVLL 142
+PF +A ++AI+PR+LIG+ Y+ Y+ +N + ++ V+G TNT VL
Sbjct: 78 ----TPF-----FADPLVAILPRLLIGVMSYYAYRASKN---IIVAAVVGTATNTLGVLA 125
Query: 143 GIYLLIPNFYSAGGKTLMATIFTINSVAEMVIAGLLTLSVTPML 186
IY+ +S ++ I T+N + EM+++ L+ +V L
Sbjct: 126 MIYVRGYLPWS-----VVLGIATMNGIPEMILSALIVYAVGKTL 164
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.329 0.143 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,527,880
Number of Sequences: 5470121
Number of extensions: 27037206
Number of successful extensions: 98116
Number of sequences better than 1.0e-05: 65
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 97995
Number of HSP's gapped (non-prelim): 68
length of query: 191
length of database: 1,894,087,724
effective HSP length: 125
effective length of query: 66
effective length of database: 1,210,322,599
effective search space: 79881291534
effective search space used: 79881291534
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 126 (53.1 bits)