R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|6573737|gb|AAF17657.1|AC009398_6 (AC009398) F20B24.11 [Arabidopsis
thaliana]
Length = 423
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 423
0 150 300
Plus Strand HSPs:
Score = 501 (176.4 bits), Expect = 6.1e-47, P = 6.1e-47
Identities = 97/112 (86%), Positives = 102/112 (91%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
MARKKIREYDSKRL+KEHFKRLSGKELPI+S QI +TD EL EKEPWLSS KLVVKPD
Sbjct: 1 MARKKIREYDSKRLVKEHFKRLSGKELPIRSVQINETTDLNELVEKEPWLSSEKLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIP 390
MLFGKRGKSGLVAL LDFA V +FVKERLGKEVEMSGCKGPITTFIVEPF+P
Sbjct: 61 MLFGKRGKSGLVALKLDFADVATFVKERLGKEVEMSGCKGPITTFIVEPFVP 112
Score = 476 (167.6 bits), Expect = 2.7e-44, P = 2.7e-44
Identities = 97/121 (80%), Positives = 102/121 (84%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
MARKKIREYDSKRL+KEHFKRLSGKELPI+S QI +TD EL EKEPWLSS KLVVKPD
Sbjct: 1 MARKKIREYDSKRLVKEHFKRLSGKELPIRSVQINETTDLNELVEKEPWLSSEKLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPFI 414
MLFGKRGKSGLVAL LDFA V +FVKERLGKEVEMSGCKGPITTFIVEPF+P
Sbjct: 61 MLFGKRGKSGLVALKLDFADVATFVKERLGKEVEMSGCKGPITTFIVEPFVP-------- 112
Query: 415 P 417
Sbjct: 113 - 112
>gi|2462746|gb|AAB71965.1| (AC002292) Similar to ATP-citrate-lyase [Arabidopsis
thaliana]
Length = 423
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 423
0 150 300
Plus Strand HSPs:
Score = 499 (175.7 bits), Expect = 9.9e-47, P = 9.9e-47
Identities = 96/112 (85%), Positives = 102/112 (91%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
MARKKIREYDSKRL+KEHFKRLSG+ELPI+S QI TD EL E+EPWLSS KLVVKPD
Sbjct: 1 MARKKIREYDSKRLVKEHFKRLSGQELPIRSVQINQETDLNELVEREPWLSSEKLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIP 390
MLFGKRGKSGLVALNLDFA V +FVKERLGKEVEMSGCKGPITTFIVEPF+P
Sbjct: 61 MLFGKRGKSGLVALNLDFADVATFVKERLGKEVEMSGCKGPITTFIVEPFVP 112
Score = 474 (166.9 bits), Expect = 4.4e-44, P = 4.4e-44
Identities = 96/121 (79%), Positives = 102/121 (84%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
MARKKIREYDSKRL+KEHFKRLSG+ELPI+S QI TD EL E+EPWLSS KLVVKPD
Sbjct: 1 MARKKIREYDSKRLVKEHFKRLSGQELPIRSVQINQETDLNELVEREPWLSSEKLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPFI 414
MLFGKRGKSGLVALNLDFA V +FVKERLGKEVEMSGCKGPITTFIVEPF+P
Sbjct: 61 MLFGKRGKSGLVALNLDFADVATFVKERLGKEVEMSGCKGPITTFIVEPFVP-------- 112
Query: 415 P 417
Sbjct: 113 - 112
>gi|3482918|gb|AAC33203.1|AAC33203 (AC003970) Similar to ATP-citrate-lyase
[Arabidopsis thaliana]
Length = 424
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 424
0 150 300
Plus Strand HSPs:
Score = 450 (158.4 bits), Expect = 1.5e-41, P = 1.5e-41
Identities = 88/112 (78%), Positives = 96/112 (85%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
MARKKIREYDSKRLLKEH KRL+ +L I+SAQ+T STDFTEL +E WLSS+KLVVKPD
Sbjct: 1 MARKKIREYDSKRLLKEHLKRLANIDLQIRSAQVTESTDFTELTNQESWLSSTKLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIP 390
MLFGKRGKSGLVAL LD A+V FVK RLG EVEM GCK PITTFIVEPF+P
Sbjct: 61 MLFGKRGKSGLVALKLDLAEVADFVKARLGTEVEMEGCKAPITTFIVEPFVP 112
Score = 425 (149.6 bits), Expect = 6.8e-39, P = 6.8e-39
Identities = 88/121 (72%), Positives = 96/121 (79%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
MARKKIREYDSKRLLKEH KRL+ +L I+SAQ+T STDFTEL +E WLSS+KLVVKPD
Sbjct: 1 MARKKIREYDSKRLLKEHLKRLANIDLQIRSAQVTESTDFTELTNQESWLSSTKLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPFI 414
MLFGKRGKSGLVAL LD A+V FVK RLG EVEM GCK PITTFIVEPF+P
Sbjct: 61 MLFGKRGKSGLVALKLDLAEVADFVKARLGTEVEMEGCKAPITTFIVEPFVP-------- 112
Query: 415 P 417
Sbjct: 113 - 112
>gi|12323802|gb|AAG51870.1|AC079675_5 (AC079675) ATP citrate-lyase, putative,
3' partial; 19757-20168 [Arabidopsis thaliana]
Length = 92
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 92
0 20 40 60 80
Plus Strand HSPs:
Score = 392 (138.0 bits), Expect = 2.1e-35, P = 2.1e-35
Identities = 77/92 (83%), Positives = 82/92 (89%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
MARKKIREYDSKRL+KEHFKRLSG+ELPI+S QI TD EL E+EPWLSS KLVVKPD
Sbjct: 1 MARKKIREYDSKRLVKEHFKRLSGQELPIRSVQINQETDLNELVEREPWLSSEKLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKE 330
MLFGKRGKSGLVALNLDFA V +FVKERLGKE
Sbjct: 61 MLFGKRGKSGLVALNLDFADVATFVKERLGKE 92
>gi|8392839 ref|NP_058683.1| ATP citrate lyase [Rattus norvegicus]
>gi|113116|sp|P16638|ACLY_RAT ATP-CITRATE (PRO-S-)-LYASE (CITRATE
CLEAVAGE ENZYME) >gi|111396|pir||A35007 ATP citrate (pro-S)-lyase
(EC 4.1.3.8) - rat >gi|203490|gb|AAA74463.1| (J05210) ATP
citrate-lyase [Rattus norvegicus]
Length = 1100
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | | 1100
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 224 (78.9 bits), Expect = 3.3e-16, P = 3.3e-16
Identities = 49/119 (41%), Positives = 66/119 (55%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E K LL ++ S + K A++T TD+ L + PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWAHLLQDHPWLLSQSLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPF 411
L +RGK GLV +NL V S++K RLG E + KG + F++EPF+P E F
Sbjct: 61 QLIKRRGKLGLVGVNLSLDGVKSWLKPRLGHEATVGKAKGFLKNFLIEPFVPHSQAEEF 119
Score = 204 (71.8 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 48/121 (39%), Positives = 65/121 (53%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E K LL ++ S + K A++T TD+ L + PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKYICTTSAIQNRFKYARVTPDTDWAHLLQDHPWLLSQSLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPFI 414
L +RGK GLV +NL V S++K RLG E + KG F+ F++EPF+
Sbjct: 61 QLIKRRGKLGLVGVNLSLDGVKSWLKPRLGHEATVGKAKG---------FLKNFLIEPFV 111
Query: 415 P 417
P
Sbjct: 112 P 112
>gi|7490235|pir||T38156 citrate lyase - fission yeast (Schizosaccharomyces
pombe) >gi|2414609|emb|CAB16586.1| (Z99295) putative ATP-citrate
(pro-S-) lyase (EC 4.1.3.8) [Schizosaccharomyces pombe]
Length = 492
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 492
0 150 300 450
Plus Strand HSPs:
Score = 182 (64.1 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 31/73 (42%), Positives = 50/73 (68%), Frame = +1
Query: 172 FTELQEKEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCK 351
F +++++ PW+ +KLV KPD L +RGKSGL+ LN + + +++ER GK ++
Sbjct: 68 FAKVEQEHPWVKETKLVAKPDQLIKRRGKSGLLKLNATWDEAKEWIRERAGKNQKVQHAV 127
Query: 352 GPITTFIVEPFIP 390
G +TTF+VEPF+P
Sbjct: 128 GYLTTFLVEPFVP 140
Score = 157 (55.3 bits), Expect = 8.8e-13, Sum P(2) = 8.8e-13
Identities = 31/82 (37%), Positives = 50/82 (60%), Frame = +1
Query: 172 FTELQEKEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCK 351
F +++++ PW+ +KLV KPD L +RGKSGL+ LN + + +++ER GK ++
Sbjct: 68 FAKVEQEHPWVKETKLVAKPDQLIKRRGKSGLLKLNATWDEAKEWIRERAGKNQKVQHAV 127
Query: 352 GPITTFIVEPFIPPFIVEPFIP 417
G +TTF+VEPF+P
Sbjct: 128 GYLTTFLVEPFVP--------- 140
Score = 52 (18.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 17/51 (33%), Positives = 23/51 (45%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSG--KELPIKSAQITASTDFTELQEKEPWL 204
M+ K IREYD K +L R KE K+ T + ++Q P L
Sbjct: 1 MSAKSIREYDGKAVLAYWLNRSPSISKE-EYKTVSATPAVQLAQIQFPLPTL 51
>gi|603074|gb|AAB60340.1| (U18197) ATP:citrate lyase [Homo sapiens]
Length = 1101
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | | 1101
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 216 (76.0 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 48/119 (40%), Positives = 65/119 (54%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E K LL + S + K A++T TD+ L + PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPF 411
L +RGK GLV +NL V S++K RLG+E + G + F++EPF+P E F
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFVPHSQAEEF 119
Score = 196 (69.0 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 47/121 (38%), Positives = 64/121 (52%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E K LL + S + K A++T TD+ L + PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPFI 414
L +RGK GLV +NL V S++K RLG+E + G F+ F++EPF+
Sbjct: 61 QLIKRRGKLGLVGVNLTLDGVKSWLKPRLGQEATVGKATG---------FLKNFLIEPFV 111
Query: 415 P 417
P
Sbjct: 112 P 112
>gi|4501865 ref|NP_001087.1| ATP citrate lyase [Homo sapiens]
>gi|1703083|sp|P53396|ACLY_HUMAN ATP-CITRATE (PRO-S-)-LYASE
(CITRATE CLEAVAGE ENZYME) >gi|105392|pir||S21173 ATP citrate
(pro-S)-lyase - human >gi|28935|emb|CAA45614.1| (X64330)
ATP-citrate (pro-S-)-lyase [Homo sapiens]
Length = 1105
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | | 1105
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 207 (72.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 47/119 (39%), Positives = 64/119 (53%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E K LL + S + K A++T TD+ L + PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPF 411
L +RGK GLV ++L V S++K RLG+E + G + F++EPF P E F
Sbjct: 61 QLIKRRGKLGLVGVDLTLDGVKSWLKPRLGQEATVGKATGFLKNFLIEPFAPHSQAEEF 119
Score = 187 (65.8 bits), Expect = 2.9e-12, P = 2.9e-12
Identities = 46/121 (38%), Positives = 63/121 (52%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E K LL + S + K A++T TD+ L + PWL S LVVKPD
Sbjct: 1 MSAKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPFI 414
L +RGK GLV ++L V S++K RLG+E + G F+ F++EPF
Sbjct: 61 QLIKRRGKLGLVGVDLTLDGVKSWLKPRLGQEATVGKATG---------FLKNFLIEPFA 111
Query: 415 P 417
P
Sbjct: 112 P 112
>gi|7303012|gb|AAF58082.1| (AE003808) ATPCL gene product [Drosophila
melanogaster]
Length = 1086
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | | 1086
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 198 (69.7 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 38/112 (33%), Positives = 62/112 (55%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E K +L H + + + ++TD+++L PWL ++ LV KPD
Sbjct: 1 MSAKAITEASGKDILNRHLNTHGAGAATCRFSTVNSTTDWSKLAVDHPWLLTTPLVCKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIP 390
L +RGK GL+ + +F QV ++ ERL K+ ++ G + FI+EPF+P
Sbjct: 61 QLIKRRGKLGLIGVKKNFEQVKQWIGERLNKDQKIGNAVGKLRNFIIEPFVP 112
Score = 173 (60.9 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 38/121 (31%), Positives = 62/121 (51%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E K +L H + + + ++TD+++L PWL ++ LV KPD
Sbjct: 1 MSAKAITEASGKDILNRHLNTHGAGAATCRFSTVNSTTDWSKLAVDHPWLLTTPLVCKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPFI 414
L +RGK GL+ + +F QV ++ ERL K+ ++ G + FI+EPF+P
Sbjct: 61 QLIKRRGKLGLIGVKKNFEQVKQWIGERLNKDQKIGNAVGKLRNFIIEPFVP-------- 112
Query: 415 P 417
Sbjct: 113 - 112
>gi|9229902|dbj|BAB00624.1| (AB036847) ATP citrate-lyase [Ciona intestinalis]
Length = 1101
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | | 1101
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 194 (68.3 bits), Expect = 5.2e-13, P = 5.2e-13
Identities = 41/111 (36%), Positives = 64/111 (57%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E +K +L ++ ++ A + ++ EL K PWL + KL+VKPD
Sbjct: 1 MSAKAINEITAKTILCKNIGDDINLSNRLRFASVDRCINWDELAVKHPWLLTEKLIVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFI 387
L +RGK GL+ +N D+A V +V ER+ KE+ + KG + FI+EPF+
Sbjct: 61 QLIKRRGKLGLIKINTDYAGVQQWVGERMLKEISIGETKGILKHFIIEPFV 111
Score = 172 (60.5 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 41/120 (34%), Positives = 64/120 (53%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPD 234
M+ K I E +K +L ++ ++ A + ++ EL K PWL + KL+VKPD
Sbjct: 1 MSAKAINEITAKTILCKNIGDDINLSNRLRFASVDRCINWDELAVKHPWLLTEKLIVKPD 60
Query: 235 MLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPPFIVEPFI 414
L +RGK GL+ +N D+A V +V ER+ KE+ + KG + FI+EPF+
Sbjct: 61 QLIKRRGKLGLIKINTDYAGVQQWVGERMLKEISIGETKG---------ILKHFIIEPFV 111
>gi|7160184|emb|CAB76164.1| (AJ243817) ATP citrate lyase, subunit 2 [Sordaria
macrospora]
Length = 481
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 481
0 150 300 450
Plus Strand HSPs:
Score = 148 (52.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 31/76 (40%), Positives = 47/76 (61%), Frame = +1
Query: 196 PWL--SSSKLVVKPDMLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTF 369
PWL ++ V KPD L +RGKSGL+ALN + + +++ ER GK ++ +G + F
Sbjct: 65 PWLLQDGARFVAKPDQLIKRRGKSGLLALNKTWPEAKAWIAERAGKAQKVEHTEGVLRQF 124
Query: 370 IVEPFIP-PFIVEPFI 414
+VEPF+P P E +I
Sbjct: 125 LVEPFVPHPQETEYYI 140
Score = 130 (45.8 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 45/131 (34%), Positives = 65/131 (49%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKR---LSGKELPIKSAQIT----ASTDFTE-------LQEK 192
M+ K I E D K +L H R + LP + AS F E L +
Sbjct: 1 MSAKSILEADGKAILNYHLTRAPVIKPSTLPNPTKHNPPPRLASLHFAEDADVNGVLSQA 60
Query: 193 E---PWL--SSSKLVVKPDMLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGP 357
E PWL ++ V KPD L +RGKSGL+ALN + + +++ ER GK ++ +G
Sbjct: 61 EVTYPWLLQDGARFVAKPDQLIKRRGKSGLLALNKTWPEAKAWIAERAGKAQKVEHTEGV 120
Query: 358 ITTFIVEPFIPPFIVEPFIP 417
+ F+VEPF+P
Sbjct: 121 LRQFLVEPFVP--------- 131
>gi|1703082|sp|P53585|ACLY_CAEEL PROBABLE ATP-CITRATE (PRO-S-)-LYASE (CITRATE
CLEAVAGE ENZYME) >gi|7498057|pir||T29496 hypothetical protein
D1005.1 - Caenorhabditis elegans >gi|1326262|gb|AAB00585.1|
(U58727) coded for by C. elegans cDNA yk133b7.5; coded for by C.
elegans cDNA yk133b7.3; coded for by C. elegans cDNA CEESE58F;
strong similarity to ATP citrate lyase and the alpha chain of
succinyl-coa synthases [Caenorhabditis elegans]
Length = 1106
Frame 1 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | | 1106
0 150 300 450 600 750 900 1050
__________________
Annotated Domains:
DOMO DM07845: 1..513
DOMO DM01167: SUCCINATE--COALIGASE(ADP-FORMIN 515..801
DOMO DM07844: 803..1105
Entrez active site: PHOSPHORYLATED IN THE COURS 760
PFAM ligase-CoA: CoA-ligases 642..793
PRODOM PD010086: ACLY(3) 1..430
PRODOM PD191737: ACLY(1) P90731(1) 432..477
PRODOM PD014373: ACLY(3) P90731(1) Q13037(1) 492..638
PRODOM PD002034: SUCD(8) SUCA(5) ACLY(3) 640..760
PRODOM PD013870: ACLY(3) P90731(1) Q13037(1) 762..873
PRODOM PD000990: CISY(35) CISZ(7) ACLY(3) 875..1078
PRODOM PD039315: ACLY(1) P90731(1) 1080..1102
__________________
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 38/110 (34%), Positives = 58/110 (52%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLS-SSKLVVKP 231
M+ K + E K +L ++F+ SG + + A +F E+ K WL+ +K V+KP
Sbjct: 1 MSAKAVSELSGKEVLYKYFEP-SGLLSAPHAFHVKAGENFDEIANKYEWLARDNKGVIKP 59
Query: 232 DMLFGKRGKSGLVALNLDFAQVVSFVKERLGKE-VEMSGCKGPITTFIVEPF 384
D L +RGK GLV + Q + E+ G V + +G + TFIVEPF
Sbjct: 60 DQLIKRRGKLGLVKIGTP--QELKAWFEKTGDSYVRVGQTEGRLHTFIVEPF 109
>gi|7494888|pir||T18713 hypothetical protein B0365.1 - Caenorhabditis elegans
>gi|3873757|emb|CAB02690.1| (Z81028) Similarity to Human ATP
citrate lyase (TR:G603074), contains similarity to Pfam domain:
PF00549 (CoA-ligases), Score=254.2, E-value=5.6e-73, N=1~cDNA EST
yk1f3.3 comes from this gene~cDNA EST yk9g5.5 comes from this
gene~cDNA EST yk1f3.5 comes>
Length = 1099
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | | 1099
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 33/110 (30%), Positives = 58/110 (52%), Frame = +1
Query: 55 MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSS-SKLVVKP 231
M+ K + E K +L ++F+ P + + A F+++ K WL+ +K V+KP
Sbjct: 1 MSAKAVSELSGKEVLYKYFESTGIVSAP-HAFHVKAGDKFSDVAAKYEWLAQDNKGVIKP 59
Query: 232 DMLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPF 384
D L +RGK GLV + ++ ++ + V++ +G + TFIVEPF
Sbjct: 60 DQLIKRRGKLGLVKIGSP-KELEAWFGKTANSYVKVGQTEGRLHTFIVEPF 109
>gi|12407235|dbj|BAB21375.1| (AB054669) ATP-citrate lyase beta-subunit
[Chlorobium limicola]
Length = 398
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 398
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.00055, P = 0.00055
Identities = 25/68 (36%), Positives = 34/68 (50%), Frame = +1
Query: 133 LPIKSAQITASTD-FTELQEKEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDFAQVVSFV 309
+P+ + + D +L E WL SKLVVK G R K GLV + L+ Q +
Sbjct: 18 IPVPNYVVIMDPDRLAQLGEANKWLRESKLVVKAHEAIGGRFKLGLVKIGLNLEQAIEAA 77
Query: 310 KERLGKEV 333
KE LG +V
Sbjct: 78 KEMLGAKV 85
>gi|3183562|sp|P80886|SUCC_BACSU SUCCINYL-COA SYNTHETASE BETA CHAIN (SCS-ALPHA)
(VEGETATIVE PROTEIN 63) (VEG63) >gi|7437894|pir||E69719
succinate--CoA ligase (ADP-forming) (EC 6.2.1.5) beta chain -
Bacillus subtilis >gi|2462967|emb|CAA04419.1| (AJ000975) putative
succinyl-coA synthetase beta chain [Bacillus subtilis]
>gi|2633981|emb|CAB13482.1| (Z99112) succinyl-CoA synthetase (beta
subunit) [Bacillus subtilis]
Length = 385
Frame 1 hits (HSPs): ___________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 385
0 150 300
__________________
Annotated Domains:
BLOCKS BL01216A: ATP-citrate lyase / succinyl-C 45..59
BLOCKS BL01216B: ATP-citrate lyase / succinyl-C 122..134
BLOCKS BL01216C: ATP-citrate lyase / succinyl-C 186..198
BLOCKS BL01216D: ATP-citrate lyase / succinyl-C 255..284
PFAM ligase-CoA: CoA-ligases 246..383
PRODOM PD000180: PUR2(17) CARB(16) PYR1(14) 9..127
PRODOM PD111317: SUCC(7) SUCB(4) 134..202
PRODOM PD003397: SUCC(8) SUCB(4) 204..383
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 73..80
PROSITE SUCCINYL_COA_LIG_3: ATP-citrate lyase / 257..281
__________________
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.97, P = 0.62
Identities = 29/86 (33%), Positives = 41/86 (47%), Frame = +1
Query: 70 IREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPDMLFGK 249
I EY K +L+++ G +P TA E E LSSS VVK + G
Sbjct: 3 IHEYQGKEVLRKY-----GVSVPEGKVAFTAE----EAVESAKSLSSSVYVVKAQIHAGG 53
Query: 250 RGKSGLVALNLDFAQVVSFVKERLGK 327
RGK+G V + +V ++ +E LGK
Sbjct: 54 RGKAGGVKIAKSLDEVKAYAEELLGK 79
>gi|10175090|dbj|BAB06189.1| (AP001515) succinyl-CoA synthetase (beta subunit)
[Bacillus halodurans]
Length = 386
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 386
0 150 300
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 1.8, P = 0.84
Identities = 35/103 (33%), Positives = 54/103 (52%), Frame = +1
Query: 70 IREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPDMLFGK 249
I EY K LL+++ G +P + ++ S D E E L S+ VVK + G
Sbjct: 3 IHEYQGKELLRQY-----GVAVP--NGKVAFSVD--EAVEAAKELGSNVCVVKAQIHAGG 53
Query: 250 RGKSG--LVALNLDFAQVVSFVKERLGKEV--EMSGCKGP-ITTFIVE 378
RGK+G VA NLD +V ++ E LGK + +G +G + ++E
Sbjct: 54 RGKAGGVKVAKNLD--EVRTYADEILGKTLVTHQTGPEGKEVKRLLIE 99
>gi|9635187 ref|NP_058461.1| orf 23 [bacteriophage phi PVL]
>gi|7515204|pir||T00156 hypothetical protein 23 - Staphylococcus
aureus phage phi PVL >gi|3341930|dbj|BAA31896.1| (AB009866) orf 23
[bacteriophage phi PVL]
Length = 50
Frame 3 hits (HSPs): _______ ____________
__________________________________________________
Database sequence: | | | | 50
0 20 40
Plus Strand HSPs:
Score = 39 (13.7 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 4/12 (33%), Positives = 7/12 (58%), Frame = +3
Query: 249 AWQKWFGCLKFG 284
+W +W C +G
Sbjct: 35 SWARWLSCYLYG 46
Score = 37 (13.0 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 5/7 (71%), Positives = 7/7 (100%), Frame = +3
Query: 147 CTNYCIN 167
C++YCIN
Sbjct: 16 CSHYCIN 22
>gi|1174473|sp|P45101|SUCC_HAEIN SUCCINYL-COA SYNTHETASE BETA CHAIN (SCS-BETA)
>gi|1075329|pir||C64189 succinate--CoA ligase (ADP-forming) (EC
6.2.1.5) beta chain - Haemophilus influenzae (strain Rd KW20)
>gi|1574125|gb|AAC22850.1| (U32799) succinyl-CoA synthetase, beta
subunit (sucC) [Haemophilus influenzae Rd]
Length = 389
Frame 1 hits (HSPs): ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 389
0 150 300
__________________
Annotated Domains:
BLOCKS BL01216A: ATP-citrate lyase / succinyl-C 45..59
BLOCKS BL01216B: ATP-citrate lyase / succinyl-C 122..134
BLOCKS BL01216C: ATP-citrate lyase / succinyl-C 179..191
BLOCKS BL01216D: ATP-citrate lyase / succinyl-C 255..284
DOMO DM01140: 1..388
PFAM ligase-CoA: CoA-ligases 246..388
PRODOM PD186273: SUCB(4) 1..132
PRODOM PD111317: SUCC(7) SUCB(4) 134..202
PRODOM PD003397: SUCC(8) SUCB(4) 204..384
PROSITE SUCCINYL_COA_LIG_3: ATP-citrate lyase / 257..281
__________________
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 4.6, P = 0.99
Identities = 27/88 (30%), Positives = 45/88 (51%), Frame = +1
Query: 70 IREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPDMLFGK 249
+ EY +K+L EH+ G LP+K+ + S + +L + LS K K + G
Sbjct: 3 LHEYQAKQLF-EHY----G--LPVKNGAVCQSVEDVDLVLAQ--LSGGKWAAKCQVHAGG 53
Query: 250 RGKSGLVALNLDFAQVVSFVKERLGKEV 333
RGK+G V L D + +F ++ LG+ +
Sbjct: 54 RGKAGGVKLVQDVEEARAFAEKWLGQRL 81
>gi|11466320 ref|NP_051148.1| ribosomal protein S14 [Cafeteria roenbergensis]
>gi|6180102|gb|AAF05799.1|AF193903_22 (AF193903) ribosomal protein
S14 [Cafeteria roenbergensis]
Length = 99
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | | | 99
0 20 40 60 80
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 9.8, P = 1.0
Identities = 24/64 (37%), Positives = 31/64 (48%), Frame = +2
Query: 29 FLHLTSKEKW----RVRRSESMTQRGC*RSTLRDFLARSCRSSLHKLLHQLISLSYKRRN 196
FLHLT K+KW RV+ +TQR R R L ++ R + KL Q +
Sbjct: 43 FLHLTQKQKWASLNRVKNRCLVTQRS--RGVFR--LTKTSRLTFRKLATQGLL------- 91
Query: 197 PGFHLLNW 220
PG L W
Sbjct: 92 PGIRLATW 99
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.95
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.360 0.159 0.680
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.348 0.150 0.523
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.320 0.137 0.397
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.366 0.158 0.556
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.358 0.160 0.569
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.316 0.133 0.387 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 138 138 10. 73 3 12 22 0.12 33
30 0.10 36
+2 0 139 138 10. 73 3 12 22 0.12 33
30 0.10 36
+1 0 139 138 10. 73 3 12 22 0.12 33
30 0.10 36
-1 0 139 139 10. 73 3 12 22 0.12 33
30 0.10 36
-2 0 139 138 10. 73 3 12 22 0.12 33
30 0.10 36
-3 0 138 138 10. 73 3 12 22 0.12 33
30 0.10 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 19
No. of states in DFA: 590 (58 KB)
Total size of DFA: 180 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 139.96u 1.09s 141.05t Elapsed: 00:00:36
Total cpu time: 140.00u 1.11s 141.11t Elapsed: 00:00:36
Start: Wed Feb 6 10:00:16 2002 End: Wed Feb 6 10:00:52 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000