BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= AA01952
(363 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|52424635|ref|YP_087772.1| PotD protein [Mannheimia succi... 575 e-162
gi|152979189|ref|YP_001344818.1| extracellular solute-bindi... 566 e-160
gi|90410078|ref|ZP_01218095.1| possible ABC transporter, pe... 338 3e-91
gi|22126166|ref|NP_669589.1| ABC transporter periplasmic bi... 337 6e-91
gi|77635385|ref|ZP_00797470.1| COG4134: ABC-type uncharacte... 337 1e-90
gi|153947363|ref|YP_001401032.1| putative spermidine/putres... 336 1e-90
gi|16122270|ref|NP_405583.1| hypothetical protein YPO2029 [... 335 4e-90
gi|87121247|ref|ZP_01077137.1| PotD protein [Marinomonas sp... 323 7e-87
gi|149188936|ref|ZP_01867225.1| hypothetical protein VSAK1_... 311 6e-83
gi|126726215|ref|ZP_01742057.1| PotD protein [Rhodobacteral... 225 4e-57
gi|118593100|ref|ZP_01550487.1| ABC transporter, substrate ... 95 6e-18
gi|15890420|ref|NP_356092.1| hypothetical protein AGR_L_608... 95 8e-18
gi|152994224|ref|YP_001339059.1| extracellular solute-bindi... 89 4e-16
gi|50123169|ref|YP_052336.1| ABC transporter periplasmic bi... 86 3e-15
gi|153011024|ref|YP_001372238.1| extracellular solute-bindi... 81 1e-13
gi|116249662|ref|YP_765500.1| putative outer membrane prote... 80 2e-13
gi|152972933|ref|YP_001338079.1| periplasmic maltose-bindin... 72 4e-11
gi|113939629|ref|ZP_01425480.1| extracellular solute-bindin... 69 6e-10
gi|119946394|ref|YP_944074.1| ABC-type uncharacterized tran... 69 7e-10
gi|124007814|ref|ZP_01692516.1| protein YnjB [Microscilla m... 66 3e-09
gi|68055545|ref|ZP_00539689.1| extracellular solute-binding... 64 2e-08
gi|150391036|ref|YP_001321085.1| extracellular solute-bindi... 62 5e-08
gi|77459367|ref|YP_348874.1| extracellular solute-binding p... 59 6e-07
gi|51244175|ref|YP_064059.1| similar to ABC transporter, pe... 58 8e-07
gi|120601582|ref|YP_965982.1| extracellular solute-binding ... 57 2e-06
gi|78355806|ref|YP_387255.1| extracellular solute-binding p... 57 2e-06
gi|150398470|ref|YP_001328937.1| hypothetical protein Smed_... 56 5e-06
gi|46581183|ref|YP_011991.1| extracellular solute-binding p... 55 5e-06
gi|59713280|ref|YP_206055.1| ABC transporter substrate-bind... 55 7e-06
gi|148979506|ref|ZP_01815563.1| hypothetical protein VSWAT3... 55 8e-06
gi|52078845|ref|YP_077636.1| putative extracellular solute-... 55 9e-06
gi|52784219|ref|YP_090048.1| hypothetical protein BLi00397 ... 55 9e-06
>gi|52424635|ref|YP_087772.1| PotD protein [Mannheimia succiniciproducens MBEL55E]
gi|52306687|gb|AAU37187.1| PotD protein [Mannheimia succiniciproducens MBEL55E]
Length = 360
Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats.
Identities = 280/363 (77%), Positives = 321/363 (88%), Gaps = 3/363 (0%)
Query: 1 MQKNIRKLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFR 60
M+ +RK +S LT A AV NFA A +L+ KSW +IEA AKKEGK+TVSVWYLQPQFR
Sbjct: 1 MRNILRKALS--LTITALAVANFA-QAENLTDKSWPDIEAQAKKEGKLTVSVWYLQPQFR 57
Query: 61 NFVKEFESQYGIKVKVPEGTMDGNINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTLTK 120
FVKEFE QYGI+VKVPEGT+DGNINKLIAEKNLE GKMDVVVL+ADR+SNV N L
Sbjct: 58 VFVKEFEKQYGIQVKVPEGTLDGNINKLIAEKNLEKGKMDVVVLSADRVSNVTNNGVLAN 117
Query: 121 LNQLPNFDKLNHHLQGVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHP 180
+ QLPNF KLNH LQGV+LG+ AVGYWGNQTG AYDPLRI E++LPQSWQD+ENYI ++P
Sbjct: 118 IKQLPNFGKLNHFLQGVDLGETAVGYWGNQTGFAYDPLRITEDQLPQSWQDVENYIQQNP 177
Query: 181 KKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWKKTWDWFSSKKDSLIR 240
KKFGYSDPNGGSSGNAFIQRALVY+NG+YDY T +D AQ+A+WKKTW+WF+++K+ +IR
Sbjct: 178 KKFGYSDPNGGSSGNAFIQRALVYVNGEYDYMTPTVDAAQVANWKKTWEWFNARKNVMIR 237
Query: 241 TASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKN 300
TASNADSLTRLNDGELV+VSAWQDHLFSLQKQGAIT RLKFY+P+FGMPGGGNV T+AKN
Sbjct: 238 TASNADSLTRLNDGELVLVSAWQDHLFSLQKQGAITTRLKFYVPQFGMPGGGNVATIAKN 297
Query: 301 TPNPAVSLVFVHWITSPEVQQKLSQEFGVRPLDSQSGLKDTIFFSAPWRKAEMESFTKEV 360
PNPA SLVF+HW+TSPEVQQKLSQEFGVRPLDS+SG +DT+FFS PWRKAEME+FTKEV
Sbjct: 298 APNPAASLVFIHWLTSPEVQQKLSQEFGVRPLDSESGKRDTLFFSTPWRKAEMEAFTKEV 357
Query: 361 ISR 363
+SR
Sbjct: 358 VSR 360
>gi|152979189|ref|YP_001344818.1| extracellular solute-binding protein family 1 [Actinobacillus
succinogenes 130Z]
gi|150840912|gb|ABR74883.1| extracellular solute-binding protein family 1 [Actinobacillus
succinogenes 130Z]
Length = 360
Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats.
Identities = 283/363 (77%), Positives = 323/363 (88%), Gaps = 3/363 (0%)
Query: 1 MQKNIRKLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFR 60
M+K K++S + A AF+ T + A DLSGKSW++IEA AK+EGKVTVSVWYLQPQFR
Sbjct: 1 MRKFFTKVLSASVVALAFSAT---VQAEDLSGKSWADIEAQAKQEGKVTVSVWYLQPQFR 57
Query: 61 NFVKEFESQYGIKVKVPEGTMDGNINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTLTK 120
FVKEFE +YGI+VKVPEGT+DGNINKLIAEKNL+ GKMDVVVLNADR+ NVA + L
Sbjct: 58 GFVKEFEDKYGIRVKVPEGTLDGNINKLIAEKNLKKGKMDVVVLNADRVGNVANSGILAN 117
Query: 121 LNQLPNFDKLNHHLQGVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHP 180
L QLPNF+KLNH LQGVELG+ +VGYWGNQTG AYDPLRIKE ELPQSWQD+E YI ++P
Sbjct: 118 LKQLPNFEKLNHFLQGVELGETSVGYWGNQTGFAYDPLRIKENELPQSWQDVEKYIQENP 177
Query: 181 KKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWKKTWDWFSSKKDSLIR 240
KKFGYSDPNGGSSGNAFIQRAL Y+NGDY+YRT+KIDE QIA WKKTW WF+ +K+S+IR
Sbjct: 178 KKFGYSDPNGGSSGNAFIQRALFYVNGDYNYRTEKIDEGQIAEWKKTWAWFNERKNSMIR 237
Query: 241 TASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKN 300
TASNADSLTRLNDGEL+IVSAWQDHLFSLQKQGAIT+RLKFY+P+FGMPGGGNVMT+AKN
Sbjct: 238 TASNADSLTRLNDGELIIVSAWQDHLFSLQKQGAITNRLKFYVPEFGMPGGGNVMTIAKN 297
Query: 301 TPNPAVSLVFVHWITSPEVQQKLSQEFGVRPLDSQSGLKDTIFFSAPWRKAEMESFTKEV 360
PNPA +++FVHW+TSPE+QQKLSQEFGVRPLDS+SG KDT+FFS PWRKAEME FTKEV
Sbjct: 298 APNPAAAMLFVHWVTSPEIQQKLSQEFGVRPLDSESGKKDTLFFSTPWRKAEMEYFTKEV 357
Query: 361 ISR 363
ISR
Sbjct: 358 ISR 360
>gi|90410078|ref|ZP_01218095.1| possible ABC transporter, periplasmic substrate binding protein
[Photobacterium profundum 3TCK]
gi|90329431|gb|EAS45688.1| possible ABC transporter, periplasmic substrate binding protein
[Photobacterium profundum 3TCK]
Length = 370
Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats.
Identities = 170/350 (48%), Positives = 230/350 (65%), Gaps = 2/350 (0%)
Query: 7 KLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRNFVKEF 66
K +G A T+F+ A D+S SW EIE AKKEG +T +VWYLQPQ+R+F+K F
Sbjct: 4 KKAVLGTALTVLATTSFSTLAYDVSTMSWDEIEVQAKKEGNITFAVWYLQPQWRSFIKNF 63
Query: 67 ESQYGIKVKVPEGTMDGNINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTLTKLNQLPN 126
E + GIKV+VPEGT DGN NKL+AE + G +DV+ + A ++ + TL L +LP
Sbjct: 64 EQETGIKVRVPEGTSDGNRNKLMAESRRDKGSIDVMAIGASDMTIINNGTTLLPLEKLPE 123
Query: 127 FDKLNHHLQGVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYS 186
+ KL +GVE AV +WGNQTGLAYDP RI E +LPQ+++ ME +I +P FG +
Sbjct: 124 YSKLTTRSEGVESNGYAVTFWGNQTGLAYDPTRIDESKLPQTFEQMETFIKNNPMAFGVN 183
Query: 187 DPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWKKTWDWFSSKKDSLIRTASNAD 246
DPNGG +G FI+ A+ +++G+ +K+D + SW KTWDWF + K+ ++ TASNAD
Sbjct: 184 DPNGGGAGQRFIESAIRHVSGESSM-GEKVDRNIVKSWSKTWDWFQNNKEDMLITASNAD 242
Query: 247 SLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAV 306
SLTR+NDGE+ I AW+DHL LQ QGAITDR+KFYIP+FGM GGGN + N N A
Sbjct: 243 SLTRINDGEISIAPAWEDHLSGLQNQGAITDRIKFYIPEFGMSGGGNFVGAPSNGQNKAA 302
Query: 307 SLVFVHWITSPEVQQKLSQEFGVRPLDSQSGLKDTIFFSAPWRKAEMESF 356
SLVF++W+TS + Q +++ FG+ P S + SA R+ ESF
Sbjct: 303 SLVFINWLTSAKTQAAMNKAFGIAPQHPDSDASHAM-ISAEMRQNSTESF 351
>gi|22126166|ref|NP_669589.1| ABC transporter periplasmic binding protein [Yersinia pestis KIM]
gi|45441677|ref|NP_993216.1| putative ABC transporter periplasmic binding protein [Yersinia
pestis biovar Microtus str. 91001]
gi|51596339|ref|YP_070530.1| possible ABC transporter, periplasmic substrate binding protein
[Yersinia pseudotuberculosis IP 32953]
gi|108807407|ref|YP_651323.1| hypothetical protein YPA_1411 [Yersinia pestis Antiqua]
gi|108811669|ref|YP_647436.1| hypothetical protein YPN_1506 [Yersinia pestis Nepal516]
gi|145598389|ref|YP_001162465.1| hypothetical protein YPDSF_1094 [Yersinia pestis Pestoides F]
gi|149366041|ref|ZP_01888076.1| putative exported protein [Yersinia pestis CA88-4125]
gi|21959130|gb|AAM85840.1|AE013831_3 putative ABC transporter periplasmic binding protein [Yersinia
pestis KIM]
gi|45436539|gb|AAS62093.1| putative ABC transporter periplasmic binding protein [Yersinia
pestis biovar Microtus str. 91001]
gi|51589621|emb|CAH21251.1| possible ABC transporter, periplasmic substrate binding protein
[Yersinia pseudotuberculosis IP 32953]
gi|108775317|gb|ABG17836.1| hypothetical protein YPN_1506 [Yersinia pestis Nepal516]
gi|108779320|gb|ABG13378.1| hypothetical protein YPA_1411 [Yersinia pestis Antiqua]
gi|145210085|gb|ABP39492.1| hypothetical protein YPDSF_1094 [Yersinia pestis Pestoides F]
gi|149292454|gb|EDM42528.1| putative exported protein [Yersinia pestis CA88-4125]
Length = 360
Score = 337 bits (865), Expect = 6e-91, Method: Composition-based stats.
Identities = 158/335 (47%), Positives = 230/335 (68%), Gaps = 6/335 (1%)
Query: 35 WSEIEALAKKEGKVTVSVWYLQPQFRNFVKEFESQYGIKVKVPEGTMDGNINKLIAEKNL 94
W + A AKKEG VT +VWYLQPQ+R+FVK FE +Y IKV++PEG++DGN+NKL+AE
Sbjct: 26 WDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQKYDIKVRIPEGSIDGNMNKLLAETRR 85
Query: 95 ETGKMDVVVLNADRLSNVAKNDTLTKLNQLPNFDKLNHHLQGVELGDVAVGYWGNQTGLA 154
E GK+DV+ L+ +L +L K++ LP + H LQ V+ AV +WGNQTG A
Sbjct: 86 EQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQDAYHQLQNVDTQGYAVAFWGNQTGFA 145
Query: 155 YDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTD 214
YDP ++ + LPQ+ ++++ +ID +PK+FGY+DPN G +G AFIQR + ++GD+ +D
Sbjct: 146 YDPQQMGDRPLPQTMEELQRFIDANPKRFGYNDPNNGGAGEAFIQRIVTTLSGDFSSESD 205
Query: 215 KIDEAQIASWKKTWDWFSSKKDSLIRTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGA 274
+D I +W+K W WF+S +++ RTAS ADSLTRLNDGEL++ AW+DHL LQK GA
Sbjct: 206 TVDPTVIKNWQKGWQWFASNNNNITRTASGADSLTRLNDGELMLTPAWEDHLSGLQKTGA 265
Query: 275 ITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQQKLSQEFGVRPLDS 334
IT RLKFY+P+FGMPGGGN+ ++A N+P+PA S VF++W+ + Q+ L++ FG P++
Sbjct: 266 ITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRVFLNWLIQADTQKALNEAFGSTPMNK 325
Query: 335 QSGLK----DT--IFFSAPWRKAEMESFTKEVISR 363
Q DT F+ + + F ++V++R
Sbjct: 326 QLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR 360
>gi|77635385|ref|ZP_00797470.1| COG4134: ABC-type uncharacterized transport system, periplasmic
component [Yersinia pestis Angola]
gi|89104298|ref|ZP_01176845.1| COG4134: ABC-type uncharacterized transport system, periplasmic
component [Yersinia pestis biovar Orientalis str. IP275]
Length = 352
Score = 337 bits (863), Expect = 1e-90, Method: Composition-based stats.
Identities = 158/335 (47%), Positives = 230/335 (68%), Gaps = 6/335 (1%)
Query: 35 WSEIEALAKKEGKVTVSVWYLQPQFRNFVKEFESQYGIKVKVPEGTMDGNINKLIAEKNL 94
W + A AKKEG VT +VWYLQPQ+R+FVK FE +Y IKV++PEG++DGN+NKL+AE
Sbjct: 18 WDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQKYDIKVRIPEGSIDGNMNKLLAETRR 77
Query: 95 ETGKMDVVVLNADRLSNVAKNDTLTKLNQLPNFDKLNHHLQGVELGDVAVGYWGNQTGLA 154
E GK+DV+ L+ +L +L K++ LP + H LQ V+ AV +WGNQTG A
Sbjct: 78 EQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQDAYHQLQNVDTQGYAVAFWGNQTGFA 137
Query: 155 YDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTD 214
YDP ++ + LPQ+ ++++ +ID +PK+FGY+DPN G +G AFIQR + ++GD+ +D
Sbjct: 138 YDPQQMGDRPLPQTMEELQRFIDANPKRFGYNDPNNGGAGEAFIQRIVTTLSGDFSSESD 197
Query: 215 KIDEAQIASWKKTWDWFSSKKDSLIRTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGA 274
+D I +W+K W WF+S +++ RTAS ADSLTRLNDGEL++ AW+DHL LQK GA
Sbjct: 198 TVDPTVIKNWQKGWQWFASNNNNITRTASGADSLTRLNDGELMLTPAWEDHLSGLQKTGA 257
Query: 275 ITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQQKLSQEFGVRPLDS 334
IT RLKFY+P+FGMPGGGN+ ++A N+P+PA S VF++W+ + Q+ L++ FG P++
Sbjct: 258 ITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRVFLNWLIQADTQKALNEAFGSTPMNK 317
Query: 335 QSGLK----DT--IFFSAPWRKAEMESFTKEVISR 363
Q DT F+ + + F ++V++R
Sbjct: 318 QLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR 352
>gi|153947363|ref|YP_001401032.1| putative spermidine/putrescine ABC transporter, periplasmic
spermidine/putrescine-binding protein [Yersinia
pseudotuberculosis IP 31758]
gi|152958858|gb|ABS46319.1| putative spermidine/putrescine ABC transporter, periplasmic
spermidine/putrescine-binding protein [Yersinia
pseudotuberculosis IP 31758]
Length = 360
Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats.
Identities = 158/335 (47%), Positives = 229/335 (68%), Gaps = 6/335 (1%)
Query: 35 WSEIEALAKKEGKVTVSVWYLQPQFRNFVKEFESQYGIKVKVPEGTMDGNINKLIAEKNL 94
W + A AKKEG VT +VWYLQPQ+R+FVK FE +Y IKV++PEG++DGN+NKL+AE
Sbjct: 26 WDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQKYDIKVRIPEGSIDGNMNKLLAETRR 85
Query: 95 ETGKMDVVVLNADRLSNVAKNDTLTKLNQLPNFDKLNHHLQGVELGDVAVGYWGNQTGLA 154
E GK+DV+ L+ +L +L K++ LP + H LQ V+ AV +WGNQTG A
Sbjct: 86 EQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQDAYHQLQNVDTQGYAVAFWGNQTGFA 145
Query: 155 YDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTD 214
YDP ++ + LPQ+ ++ + +ID +PK+FGY+DPN G +G AFIQR + ++GD+ +D
Sbjct: 146 YDPQQMGDRPLPQTMEEFQRFIDANPKRFGYNDPNNGGAGEAFIQRIVTTLSGDFSSESD 205
Query: 215 KIDEAQIASWKKTWDWFSSKKDSLIRTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGA 274
+D I +W+K W WF+S +++ RTAS ADSLTRLNDGEL++ AW+DHL LQK GA
Sbjct: 206 TVDPTVIKNWQKGWQWFASNNNNITRTASGADSLTRLNDGELMLTPAWEDHLSGLQKTGA 265
Query: 275 ITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQQKLSQEFGVRPLDS 334
IT RLKFY+P+FGMPGGGN+ ++A N+P+PA S VF++W+ + Q+ L++ FG P++
Sbjct: 266 ITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRVFLNWLIQADTQKALNEAFGSTPMNK 325
Query: 335 QSGLK----DT--IFFSAPWRKAEMESFTKEVISR 363
Q DT F+ + + F ++V++R
Sbjct: 326 QLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR 360
>gi|16122270|ref|NP_405583.1| hypothetical protein YPO2029 [Yersinia pestis CO92]
gi|115347749|emb|CAL20665.1| putative exported protein [Yersinia pestis CO92]
Length = 360
Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats.
Identities = 157/335 (46%), Positives = 229/335 (68%), Gaps = 6/335 (1%)
Query: 35 WSEIEALAKKEGKVTVSVWYLQPQFRNFVKEFESQYGIKVKVPEGTMDGNINKLIAEKNL 94
W + A AKKEG VT +VWYLQPQ+R+FVK FE +Y IKV++PEG++DGN+NKL+AE
Sbjct: 26 WDSVVAQAKKEGSVTFNVWYLQPQWRSFVKNFEQKYDIKVRIPEGSIDGNMNKLLAETRR 85
Query: 95 ETGKMDVVVLNADRLSNVAKNDTLTKLNQLPNFDKLNHHLQGVELGDVAVGYWGNQTGLA 154
E GK+DV+ L+ +L +L K++ LP + H LQ V+ AV +WGNQTG A
Sbjct: 86 EQGKIDVIALSIAQLPITMGAKSLAKVDDLPGYQDAYHQLQNVDTQGYAVAFWGNQTGFA 145
Query: 155 YDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTD 214
YDP ++ + LPQ+ ++++ +ID +PK+FGY+DPN G +G AFIQR + ++GD+ +D
Sbjct: 146 YDPQQMGDRPLPQTMEELQRFIDANPKRFGYNDPNNGGAGEAFIQRIVTTLSGDFSSESD 205
Query: 215 KIDEAQIASWKKTWDWFSSKKDSLIRTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGA 274
+D I +W+K W WF+S +++ RTAS ADSLTRLNDGEL++ W+DHL LQK GA
Sbjct: 206 TVDPTVIKNWQKGWQWFASNNNNITRTASGADSLTRLNDGELMLTPDWEDHLSGLQKTGA 265
Query: 275 ITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQQKLSQEFGVRPLDS 334
IT RLKFY+P+FGMPGGGN+ ++A N+P+PA S VF++W+ + Q+ L++ FG P++
Sbjct: 266 ITSRLKFYVPEFGMPGGGNIASIAANSPHPAASRVFLNWLIQADTQKALNEAFGSTPMNK 325
Query: 335 QSGLK----DT--IFFSAPWRKAEMESFTKEVISR 363
Q DT F+ + + F ++V++R
Sbjct: 326 QLNADVKQPDTPVQFYGKAYSMQMKKEFARQVMTR 360
>gi|87121247|ref|ZP_01077137.1| PotD protein [Marinomonas sp. MED121]
gi|86163404|gb|EAQ64679.1| PotD protein [Marinomonas sp. MED121]
Length = 368
Score = 323 bits (829), Expect = 7e-87, Method: Composition-based stats.
Identities = 170/327 (51%), Positives = 228/327 (69%), Gaps = 4/327 (1%)
Query: 5 IRKLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRNFVK 64
++K++ L + A + A A D++ SW+EI+ AKKEGKV +VWYLQP +R FVK
Sbjct: 3 VKKVLKTSLLSLAAVIATSAFA-YDVTKMSWTEIQTQAKKEGKVNFAVWYLQPGWREFVK 61
Query: 65 EFESQYGIKVKVPEGTMDGNINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTLTKLNQL 124
EFES+YGIKV++PEGT+DGN NKLIAE + GKMD+V + A + + TL LN+L
Sbjct: 62 EFESEYGIKVRIPEGTLDGNRNKLIAESKQKQGKMDLVAIGAANVQLLNLEKTLMPLNKL 121
Query: 125 PNFDKLNHHLQGVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFG 184
P++ +L +G + AV +WGNQ+G+AYDP RI E ELPQ+++ + +YI+ HPK+FG
Sbjct: 122 PDYAQLKTVSEGFDSKGYAVTFWGNQSGIAYDPSRIDEAELPQTFEQLSHYINSHPKEFG 181
Query: 185 YSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWKKTWDWFSSKKDSLIRTASN 244
+DPNGG SG FI+ AL + ++ T D Q WK TW+WF+ KD + T SN
Sbjct: 182 VNDPNGGGSGGRFIEAALRNFSIKFEGETLDQDSPQ---WKNTWNWFNQYKDEITITGSN 238
Query: 245 ADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNP 304
ADS+TR+NDGELV+ AW+DHL LQK+GAITDRLKFYIP FGM GG N +T+AKN NP
Sbjct: 239 ADSITRINDGELVLAPAWEDHLAGLQKRGAITDRLKFYIPVFGMSGGANFVTIAKNAKNP 298
Query: 305 AVSLVFVHWITSPEVQQKLSQEFGVRP 331
A +LVF+ W+TS + Q KL+ +FGV P
Sbjct: 299 AAALVFLDWLTSADTQTKLNAKFGVAP 325
>gi|149188936|ref|ZP_01867225.1| hypothetical protein VSAK1_21259 [Vibrio shilonii AK1]
gi|148837122|gb|EDL54070.1| hypothetical protein VSAK1_21259 [Vibrio shilonii AK1]
Length = 371
Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats.
Identities = 165/358 (46%), Positives = 234/358 (65%), Gaps = 5/358 (1%)
Query: 5 IRKLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRNFVK 64
++KLV A ++ ALA DL+ +W EI AK+E V +WYLQP+FR F K
Sbjct: 1 MKKLVLTAAMTALAGLSTNALA-YDLNDMTWDEIVEQAKQEKMVNAYIWYLQPEFRKFFK 59
Query: 65 EFESQYGIKVKVPEGTMDGNINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTLTK--LN 122
EFE +YGIKV+VPEG GN NKL+AE + G +DV+ L+ +L + +++ + +
Sbjct: 60 EFEKEYGIKVRVPEGNESGNRNKLLAEARRDQGSIDVMALDTVKLPMLLQSNVVYGPLTD 119
Query: 123 QLPNFDKLNHHLQGVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKK 182
+P +KL +L GV+ A +WGNQTG AYDP R+ E LPQS+ D+ +I +H ++
Sbjct: 120 IIPGSEKLRTNLVGVDTQGYAYAFWGNQTGFAYDPTRVDENNLPQSFDDLTTWIKEHKQQ 179
Query: 183 FGYSDPNGGSSGNAFIQRALVYINGDYD-YRTDKIDEAQIASWKKTWDWFSSKKDSLIRT 241
FG +DPN G +GNAFIQRA+ Y +G+ D Y +++D++ I +W KTW+WF +D+++ T
Sbjct: 180 FGVNDPNKGGAGNAFIQRAIYYASGNNDVYFQNEMDKSVIPTWSKTWEWFEGNQDNIVIT 239
Query: 242 ASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNT 301
ASNADSLTR+NDGE+ + AW+DHL LQK+GAIT R+KFYIP+FGMPGGGN++ + KN
Sbjct: 240 ASNADSLTRINDGEISMAPAWEDHLAGLQKKGAITKRIKFYIPEFGMPGGGNIILMPKNA 299
Query: 302 PNPAVSLVFVHWITSPEVQQKLSQEFGVRPLDSQSGLKDTIFFSAPWRKAEMESFTKE 359
N A + VF+HWITS + Q L+ FG P + + + +A RK E FT E
Sbjct: 300 KNKAAAAVFIHWITSAQAQTGLNATFGAAPQHPDADDSNALIDNAQ-RKYSSEFFTSE 356
>gi|126726215|ref|ZP_01742057.1| PotD protein [Rhodobacterales bacterium HTCC2150]
gi|126705419|gb|EBA04510.1| PotD protein [Rhodobacterales bacterium HTCC2150]
Length = 366
Score = 225 bits (573), Expect = 4e-57, Method: Composition-based stats.
Identities = 133/327 (40%), Positives = 200/327 (61%), Gaps = 3/327 (0%)
Query: 10 SIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRNFVKEFESQ 69
S+ T A A + A DL+ SW +I A AK+EG+VT VWYL+ FR V+ FE +
Sbjct: 4 SLLATTALLASATMSFAG-DLTSMSWDDIVAQAKEEGEVTWYVWYLRDDFRRAVQAFEEE 62
Query: 70 YGIKVKVPEGTMDGNINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTLTKLNQLPNFDK 129
YGI V +PEGT GN K++AE++ ETG +DV+ D + V + L+ LP D
Sbjct: 63 YGISVTIPEGTAAGNSEKMLAERDRETGDIDVLAWGTDGFATVDLAPLFSSLSVLPEDDG 122
Query: 130 LNHHLQGVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPN 189
L G + GD V +WGNQTG+AYDP + + LPQ+ + + ++P KFG++
Sbjct: 123 RVVELAGFDGGDHVVAFWGNQTGIAYDPAHVSADNLPQTPDEFAAFWAENPGKFGFNYEK 182
Query: 190 GGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWKKTWDWFSSKKDSLIRTASNADSLT 249
GG SG +F Q L + D D+ ++ + ++A+ + D+F+ ++ + TASNADS+
Sbjct: 183 GG-SGPSFYQNTLRVV-ADIDFSNGEVTDERLAAIQPGIDFFNEHAENYVVTASNADSII 240
Query: 250 RLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLV 309
R +DGEL +V AW+DHL LQ +G + + +KFYIP+ GM GGGN + + N PNPA + V
Sbjct: 241 RASDGELWMVPAWEDHLAGLQNRGEVREEIKFYIPEMGMNGGGNGVAIPLNAPNPAAAAV 300
Query: 310 FVHWITSPEVQQKLSQEFGVRPLDSQS 336
FV+W+TSPE Q +++FG P+++ +
Sbjct: 301 FVNWLTSPETQSMFNKDFGTAPMNTAA 327
>gi|118593100|ref|ZP_01550487.1| ABC transporter, substrate binding protein [Stappia aggregata IAM
12614]
gi|118434407|gb|EAV41061.1| ABC transporter, substrate binding protein [Stappia aggregata IAM
12614]
Length = 417
Score = 95.1 bits (235), Expect = 6e-18, Method: Composition-based stats.
Identities = 85/323 (26%), Positives = 155/323 (47%), Gaps = 21/323 (6%)
Query: 18 FAVTNFALAATDLSGKSWSEIEA-LAKKEGKVTV-SVWYLQPQ--FRN-FVKEFESQYGI 72
F VT+ ++ + L+ +++ ++ LAKK+G++T S W P F+N + FE +YGI
Sbjct: 34 FNVTDTSVDLSQLTRENFYDVLVPLAKKDGEMTFYSYWPPAPLVVFQNQIIPAFEKKYGI 93
Query: 73 KVKVPEGTMDGNINKL-IAEKNLETGKMDVVVLNADRLSNVAKNDTLTKLNQLPNFDKLN 131
KV + + +L A K + MD ++D +++ + + + LPN L+
Sbjct: 94 KVHFNSVETNVGLPQLDAAYKEGKPSPMDGY-FSSDLPADLNEMANIRLTDILPNAADLD 152
Query: 132 HHL----QGVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSD 187
L +G+E V + GNQT +A++ +K +E+PQ+++D+ Y +P K +
Sbjct: 153 PSLAYEYRGIEHNGAYVPFHGNQTVIAFNSAFVKGDEVPQTFEDLLAYSKANPGKVAITS 212
Query: 188 PNGGSSGNAFIQRALVYINGD------YDYRTDKIDEAQIAS----WKKTWDWFSSKKDS 237
P G SG+ F+ + D D D+ ++ + + W +F+ ++
Sbjct: 213 PLRGGSGSGFLTAVSHKLMSDDCVAKWMDLSADEAAADKLVNNSECFAPVWAYFNDLLET 272
Query: 238 LIRTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTV 297
T N D+L + +G + +AW+D FS + D ++ I G PGG +
Sbjct: 273 AQITNGNTDTLNLMANGVANVGTAWEDLTFSYVMGNQLPDTVRVTILNGGQPGGAEGAFI 332
Query: 298 AKNTPNPAVSLVFVHWITSPEVQ 320
NT N A +L+F+ I +PE Q
Sbjct: 333 PSNTANLAAALLFMDEILAPEHQ 355
>gi|15890420|ref|NP_356092.1| hypothetical protein AGR_L_608 [Agrobacterium tumefaciens str. C58]
gi|17938257|ref|NP_535046.1| ABC transporter, substrate binding protein [Agrobacterium
tumefaciens str. C58]
gi|15158644|gb|AAK88877.1| AGR_L_608p [Agrobacterium tumefaciens str. C58]
gi|17743057|gb|AAL45362.1| ABC transporter, substrate binding protein [Agrobacterium
tumefaciens str. C58]
Length = 409
Score = 94.7 bits (234), Expect = 8e-18, Method: Composition-based stats.
Identities = 82/301 (27%), Positives = 131/301 (43%), Gaps = 24/301 (7%)
Query: 42 AKKEGKVTVSVW--YLQPQFRNFVKEFESQYGIKVKVPEGTMDGNINKLIA-EKNLETGK 98
AK EGKVT+ + ++ + FE++YGIKV + D +LIA + +
Sbjct: 50 AKAEGKVTMYNFAGSFADTWKELITRFEAKYGIKVAYSDVKGDQANQQLIAVQAAGQDSP 109
Query: 99 MDVVVLNADRL-----SNVAKNDTLTKLNQLPNFDKLNHHLQGVELGDVAVGYWG----N 149
+D V N LTK+ LPN N L G G + N
Sbjct: 110 VDAYFAGGGSYPLLSSKGVVGNIALTKI--LPNMANYNPELAETVFGKPHGGSFPLVHLN 167
Query: 150 QTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQR-ALVYINGD 208
QT + Y +K E++P+S++D+ + +K+PK+ G + P G SG FI AL Y+ GD
Sbjct: 168 QTAIGYHSAFVKAEDVPKSFEDLLVWAEKNPKRLGVTLPAKGGSGGGFIYSVALNYLTGD 227
Query: 209 YDYRTDKIDEA--QIASW-------KKTWDWFSSKKDSLIRTASNADSLTRLNDGELVIV 259
+ ++ Q W WD++ T NAD+L +N+ +L +
Sbjct: 228 CRKQLTDYNQTLQQAEDWAMESECLTPVWDYYRRLLAVAELTNGNADTLNLINNQQLYMG 287
Query: 260 SAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEV 319
+ W+D + S + D + + + G G G+ M V N N A +L+ + S E
Sbjct: 288 TVWEDQVMSFLGTKQLPDSFRVTLLEKGQVGSGDAMFVPANAKNVASALLLIDMAMSKEF 347
Query: 320 Q 320
Q
Sbjct: 348 Q 348
>gi|152994224|ref|YP_001339059.1| extracellular solute-binding protein family 1 [Marinomonas sp.
MWYL1]
gi|150835148|gb|ABR69124.1| extracellular solute-binding protein family 1 [Marinomonas sp.
MWYL1]
Length = 382
Score = 89.4 bits (220), Expect = 4e-16, Method: Composition-based stats.
Identities = 90/333 (27%), Positives = 148/333 (44%), Gaps = 34/333 (10%)
Query: 2 QKNIRKLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRN 61
+ +I L +IGLT ++FA A T L+ S A + V YL P+F
Sbjct: 4 KTHIAVLAAIGLTQ----FSSFAHAETTLNVAS-------AGSQNMVDYVKTYLAPKFE- 51
Query: 62 FVKEFESQYGIKVKVPEGTMDGN------INKLIAEKN--LETGKMDVVVLNADRLSNVA 113
+ G+KV V GT G+ + KL A+ + L+ +DV V++ +
Sbjct: 52 -----ATHPGVKVNVV-GTGPGDAGSHKIMEKLSAQNDSGLDKWDIDVAVVHQQIGGELV 105
Query: 114 KNDTLTKLNQLPNFDKL-----NHHLQGVELGDVAVGYWGNQTGLAYDPLRIKEEELPQS 168
KN L+K N K+ + G+++ + + +QT +AY+ I P+S
Sbjct: 106 KNGLLSKYRSDINTGKMVSRDSATNALGIDVDGYVMPMFHSQTAIAYNSDFITTP--PKS 163
Query: 169 WQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTD-KIDEAQIASWKKT 227
+ ++ + +HPK FGY+ G SG +F+ + D D + D++ +SW K
Sbjct: 164 YDELVKWTQQHPKSFGYNGIKNGMSGVSFVTGWIYAYGTDADKLSSMPYDKSVESSWDKA 223
Query: 228 WDWFSSKKDSLIRTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFG 287
+ ++ T NA +L LN GE+ + W D +S ++QG I LK + G
Sbjct: 224 FAELKEFNKNITFTPGNAGTLDMLNRGEIFMGPVWVDMFYSWKEQGKIPPSLKLSLIAPG 283
Query: 288 MPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQ 320
MPG +P ++ F+ TSPEVQ
Sbjct: 284 MPGQPMYYVTPTKAEHPQLAREFIELATSPEVQ 316
>gi|50123169|ref|YP_052336.1| ABC transporter periplasmic binding protein [Erwinia carotovora
subsp. atroseptica SCRI1043]
gi|49613695|emb|CAG77146.1| ABC transporter periplasmic binding protein [Erwinia carotovora
subsp. atroseptica SCRI1043]
Length = 377
Score = 86.3 bits (212), Expect = 3e-15, Method: Composition-based stats.
Identities = 70/269 (26%), Positives = 122/269 (45%), Gaps = 16/269 (5%)
Query: 66 FESQY-GIKVK-VPEGTMDGNINKLIAEKNLE------TGKMDVVVLNADRLSN-VAKND 116
FE Q+ G+KV+ V G D K++ N + DV V++ + V K D
Sbjct: 45 FEKQHPGVKVRAVGTGPGDAGSQKILERFNAQQVAGAKVWDTDVAVVHEKFVGPMVQKGD 104
Query: 117 TLTKLNQLPNFDKLNHHLQGVELGDVAVGY----WGNQTGLAYDPLRIKEEELPQSWQDM 172
L + + + ++ +G GY + +QT LAY+P + P+S+ ++
Sbjct: 105 LLKYRDDIASGKLVSMAAADKAMGTDVKGYVMPMFSSQTALAYNPSMVANP--PKSYDEI 162
Query: 173 ENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTD-KIDEAQIASWKKTWDWF 231
+ + +PK FGY+ GG+SG +F+ + GD + D+A+ W+ ++
Sbjct: 163 QQWAAANPKMFGYNGIKGGASGVSFVMGWIYAYGGDAQKLMNGPFDDAEAKKWQPAFERL 222
Query: 232 SSKKDSLIRTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGG 291
+ ++ T NA +L L+ GE+ + W D +S + G + D K +P GMPG
Sbjct: 223 KAFNKNVTLTPGNAGTLDMLSRGEIAMGPVWVDMFYSWKASGQLPDNFKLLLPTPGMPGQ 282
Query: 292 GNVMTVAKNTPNPAVSLVFVHWITSPEVQ 320
+ PN ++ FV TS +VQ
Sbjct: 283 PMHYVIPAQAPNRELAKQFVELATSAKVQ 311
>gi|153011024|ref|YP_001372238.1| extracellular solute-binding protein family 1 [Ochrobactrum
anthropi ATCC 49188]
gi|151562912|gb|ABS16409.1| extracellular solute-binding protein family 1 [Ochrobactrum
anthropi ATCC 49188]
Length = 377
Score = 80.9 bits (198), Expect = 1e-13, Method: Composition-based stats.
Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 3/186 (1%)
Query: 136 GVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGN 195
G ++ + + +QT LAY+P + P+S+ ++ + ++PK+FGY+ GG+SG
Sbjct: 128 GTDVDGYVMPMFNSQTALAYNPALVANP--PKSYDELVAWAKENPKQFGYNGIKGGASGV 185
Query: 196 AFIQRALVYINGDYD-YRTDKIDEAQIASWKKTWDWFSSKKDSLIRTASNADSLTRLNDG 254
+F+ + GD D +E + +W K + + T NA +L L+ G
Sbjct: 186 SFVMGWIYAYGGDADKLMKGPFEEGEAKNWDKAFASLKDFTKNATLTPGNAGTLDMLSRG 245
Query: 255 ELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWI 314
E+ + W D +S + G + +K +P GMPG + + + + ++ FV
Sbjct: 246 EIAMGPVWVDMFYSWKANGQLPPEMKLVLPAPGMPGQPMHYVIPEKSAHKELAEKFVALA 305
Query: 315 TSPEVQ 320
TSP+VQ
Sbjct: 306 TSPKVQ 311
>gi|116249662|ref|YP_765500.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae
3841]
gi|115254310|emb|CAK03931.1| putative outer membrane protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 381
Score = 80.5 bits (197), Expect = 2e-13, Method: Composition-based stats.
Identities = 57/206 (27%), Positives = 93/206 (45%), Gaps = 10/206 (4%)
Query: 146 YWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYI 205
Y G+Q LAYD ++ ++ P+SW + +I +P +F Y+ P+ G SG F++RA+
Sbjct: 138 YRGSQVLLAYDTTKLDPKDAPKSWDQLTAWIKANPGQFIYNRPDKGGSGGNFVRRAIHEA 197
Query: 206 NGDYDYRTDKID--------EAQIASWKKTWDWFSSKKDSLIRTASNADSLTRLNDGELV 257
NG D + KID E +WK D + D TA N S+ L G +
Sbjct: 198 NGR-DPKKFKIDNFTADFATETLTPAWKILNDLAPALYDKGAYTAGNTQSIQLLAQGVVT 256
Query: 258 IVSAWQDHLFSLQKQGAITDRLKFY-IPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITS 316
+V W D + QG + D + + GG + +TV N N +L ++ +
Sbjct: 257 MVPVWSDQVLQAISQGVLPDTTGIVQLSDLALCGGFSSITVFSNGANKDAALKLAAFMLT 316
Query: 317 PEVQQKLSQEFGVRPLDSQSGLKDTI 342
E+Q+ + G P S + D +
Sbjct: 317 KEMQEAIITGIGGFPAVSWDHISDEL 342
>gi|152972933|ref|YP_001338079.1| periplasmic maltose-binding protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|150957782|gb|ABR79812.1| periplasmic maltose-binding protein [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
Length = 379
Score = 72.4 bits (176), Expect = 4e-11, Method: Composition-based stats.
Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 16/204 (7%)
Query: 136 GVELGDVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGN 195
GV + + + +QT +A++ + P S+ ++ + KHP+ FGY+ G SG
Sbjct: 130 GVNVDGYVMPMFLSQTAIAWNSDLVTTP--PASYDELVAWTQKHPQAFGYNGIKNGMSGV 187
Query: 196 AFIQRALVYINGDYDYRTDK-------IDEAQIASWKKTWDWFSSKKDSLIRTASNADSL 248
+F+ + Y Y TD D++ W++ ++ + ++ T NA +L
Sbjct: 188 SFV------VGWIYAYGTDAQRLSAGPYDKSVEKGWQQAYEKLKAFNKNVTFTPGNAGTL 241
Query: 249 TRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSL 308
L+ GE+ + W D +S + QG + +K + GMPG + NP ++
Sbjct: 242 DMLSRGEIAMGPVWVDMFYSWKDQGKLPPSIKLALLAPGMPGQPMYYVIPAKAANPQLAR 301
Query: 309 VFVHWITSPEVQ-QKLSQEFGVRP 331
F+ TSPEVQ Q + ++F P
Sbjct: 302 DFIALATSPEVQAQGIVKQFNWYP 325
>gi|113939629|ref|ZP_01425480.1| extracellular solute-binding protein, putative [Herpetosiphon
aurantiacus ATCC 23779]
gi|113898674|gb|EAU17685.1| extracellular solute-binding protein, putative [Herpetosiphon
aurantiacus ATCC 23779]
Length = 429
Score = 68.6 bits (166), Expect = 6e-10, Method: Composition-based stats.
Identities = 77/327 (23%), Positives = 140/327 (42%), Gaps = 27/327 (8%)
Query: 19 AVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRNFVKEF-----ESQYGIK 73
A A ++T L +W+ IE A + V +W FV EF + +Y I
Sbjct: 31 ATPTSAPSSTSLDLSNWTSIEQAANGQ-TVNWYMWGGSDSINRFVDEFYGKALKERYNIT 89
Query: 74 V-KVPEGTMDGNINKLIAEKNL--ETGKMDVVVLNADRLSNVAKNDTLTKL--NQLPNFD 128
+ +VP +N+L++EK +G +D++ +N + +++ + L LPN
Sbjct: 90 LNRVPVADTVDVVNQLLSEKEAGKTSGAVDLIWINGENFASLKQAKLLRGDWGQSLPNSQ 149
Query: 129 KLNHHLQGVELG------DVAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKK 182
+N + V L + + Q L YD +++ +LP+S+ ++ Y +P K
Sbjct: 150 YVNWNNPAVNLDFGEPVESLESPWSSAQFQLIYDSAKLQASDLPRSYAALKEYACANPGK 209
Query: 183 FGYSDPNGGS-SGNAFIQRALVYINGDYDYRTDKIDEAQIASWK-KTWDWFSSKKDSLIR 240
Y P G+ G F+++AL I+G + ++ W K W++F+ + L R
Sbjct: 210 VSYIAPGPGAFQGTRFVKQALFEISGGAEQWLGAFNQQLWDQWSPKLWEYFNDLEGCLWR 269
Query: 241 -------TASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGN 293
T + SL + + I A SL K+ + + ++ M G N
Sbjct: 270 EGSTYPKTENELHSLFANGEVDFSITQAIAG-AGSLIKENLVPASARAFVFDDNMIGDFN 328
Query: 294 VMTVAKNTPNPAVSLVFVHWITSPEVQ 320
+ + PNPA +LV + I P++Q
Sbjct: 329 YVAIPSTAPNPAAALVLANLILDPQLQ 355
>gi|119946394|ref|YP_944074.1| ABC-type uncharacterized transport system, periplasmic component
[Psychromonas ingrahamii 37]
gi|119864998|gb|ABM04475.1| ABC-type uncharacterized transport system, periplasmic component
[Psychromonas ingrahamii 37]
Length = 381
Score = 68.6 bits (166), Expect = 7e-10, Method: Composition-based stats.
Identities = 77/311 (24%), Positives = 139/311 (44%), Gaps = 26/311 (8%)
Query: 34 SWSEIEALAKKEGKVTVSVWYLQPQFRNFV----KEFESQYGIKVK-VPEGTMDGNINKL 88
+W +IE A+ + V W N++ K +++YG+ +K V + I +L
Sbjct: 23 NWQKIEEKAQSQ-TVYFYAWGGSQDINNYLRWADKRLQAEYGVTLKHVKVTDISEAITRL 81
Query: 89 IAEKNL---ETGKMDVVVLNADRLSNVAKNDTLTK--LNQLPNFDKLNHHLQ-GVELGDV 142
+AEK+ G +D+V +N + ++ + LT+ + LPN+ ++ L + +
Sbjct: 82 VAEKSANKNSNGSIDMVWINGENFKSMKDFNLLTEPFVTNLPNWQYVDKSLPVDSDFAEP 141
Query: 143 AVGY---WG-NQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFI 198
+G WG Q YD + K + PQS +M Y HP K Y P G +F+
Sbjct: 142 TLGLEAPWGVGQLVFIYD--KNKVDNPPQSHSEMLVYAKSHPNKLSYPRPP-SFHGTSFL 198
Query: 199 QRALVYINGDYDYRTDKIDEAQIASWKKT-WDWFSSKKDSLIRT-----ASNADSLTRLN 252
+ AL+ ++ + D +D+ A W + R A++A++L L+
Sbjct: 199 KSALIELSENPDALYSPVDDTTFAQITAPLWSYLEDFHQVAWRQGKQFPANSAETLQLLD 258
Query: 253 DGEL-VIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFV 311
DGEL + +S + +FS Q G + D Y G + +++ N +LV +
Sbjct: 259 DGELDLAISFNPNEVFSAQANGLLRDSTTAYALAAGALSNIHFLSIPWNAAAKEGALVAI 318
Query: 312 HWITSPEVQQK 322
+++ SPE Q K
Sbjct: 319 NFLLSPEAQLK 329
>gi|124007814|ref|ZP_01692516.1| protein YnjB [Microscilla marina ATCC 23134]
gi|123986760|gb|EAY26541.1| protein YnjB [Microscilla marina ATCC 23134]
Length = 411
Score = 66.2 bits (160), Expect = 3e-09, Method: Composition-based stats.
Identities = 80/342 (23%), Positives = 149/342 (43%), Gaps = 32/342 (9%)
Query: 3 KNIRKLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRNF 62
+ I L+ +G+ A + A DL+ SWS+IEA AK + V + +W P +
Sbjct: 8 RQILFLLILGVLYACGGKSAKQQANPDLNKLSWSQIEAQAKGQ-TVNLMMWMGDPLINAY 66
Query: 63 VKEF-----ESQYGIKVKVPEGTMDGNINKLIAEKNLETGK----MDVVVLNADRLSNVA 113
+K+F + +Y I++ + G ++ LIAEK E GK +D++ +N + +
Sbjct: 67 MKKFVQAQLKEKYDIRLNIISGQGKEILSTLIAEK--EAGKTNSEIDMMWINGETFFQLK 124
Query: 114 KNDTLTK--LNQLPNFDKLNHHLQGVELG-----DVAVGYWGN-QTGLAYDPLRIKEEEL 165
+ L QLPN +N + + + D WGN Q L Y+ ++K
Sbjct: 125 QIKALYGPFTAQLPNARLINFNSRFINTDFQQPVDGMECPWGNVQLALIYNSNQVKNP-- 182
Query: 166 PQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWK 225
P++ +++E ++ HP KF +G ++ L+ + D K D+A+ +
Sbjct: 183 PKNLKELEQFVKAHPGKFTLGTE---FTGITLLKSMLIALANDPKDLYGKFDQAKYDQYS 239
Query: 226 -KTWDWFSSKKDSLIRTASNADSL-----TRLNDGELVIVSAWQD-HLFSLQKQGAITDR 278
K W + K L + S +GEL + D + + QG
Sbjct: 240 AKLWQYLRRLKPYLWKAGKTFPSTLAAMHQMFANGELWFTMSNNDCEVDNKIAQGTFPAW 299
Query: 279 LKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQ 320
+ Y+ + G + + + + +PN A ++V ++++ SPE Q
Sbjct: 300 ARAYVLESGTIQNSHYLGITQTSPNKAAAMVAINYMISPEAQ 341
>gi|68055545|ref|ZP_00539689.1| extracellular solute-binding protein, putative [Exiguobacterium
sibiricum 255-15]
gi|68007858|gb|EAM87099.1| extracellular solute-binding protein, putative [Exiguobacterium
sibiricum 255-15]
Length = 397
Score = 63.9 bits (154), Expect = 2e-08, Method: Composition-based stats.
Identities = 89/346 (25%), Positives = 149/346 (43%), Gaps = 40/346 (11%)
Query: 1 MQKNIRKLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSV--WYLQPQ 58
M K + + + GL A A + A + G S++ I AK TV + W
Sbjct: 1 MIKQMTAIAATGLLLAGCA-SPAAPVQEKVLGSSYTSI---AKDANATTVRMYMWGGDEG 56
Query: 59 FRNFVKEF-----ESQYGIKVK-VPEGTMDGNINKLIAEKNL--ETGKMDVVVLNADRLS 110
++ E+ + ++ I +K VP T D I KL AEK E G +DVV +N D
Sbjct: 57 INAYIDEYVAPKLKKEHKITLKRVPIETAD-LIQKLRAEKKAGKEKGVIDVVWINGDNFR 115
Query: 111 NVAKNDTL----TKLNQLPNFDKLNHHLQGVELG---DVAVGYWGN-QTGLAYDPLRIKE 162
N K+ L TK+ LPN ++ QG + G D WG Q YD +K
Sbjct: 116 NAKKDGLLYGEITKV--LPNMKYVDPQAQGSDSGTPTDHLEAAWGKVQYTFHYDQASVKN 173
Query: 163 EELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIA 222
PQ +++++++ ++P KF Y + +GNAF++ + + + K D
Sbjct: 174 P--PQDLRELKSWVKENPGKFTYPEVTD-FTGNAFVRHVMYGLESKETLKDPKAD----- 225
Query: 223 SWKKTWDWFSSKKDSLIRTASN-ADSLTRLND----GELVIVSAWQDHLFSLQ-KQGAIT 276
+KKTW + + K L + +L +L+ G + + + + K G
Sbjct: 226 -FKKTWAYLNELKPYLWKEGKTYPKTLAQLDQLYAKGSVAFTMGFNERRAEQEVKSGTFP 284
Query: 277 DRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQQK 322
+ I K G + +++ N PNP +LV ++ + SP+ Q K
Sbjct: 285 KETRPLILKDGSIASTHFLSIPFNAPNPNGALVTINTLLSPDAQLK 330
>gi|150391036|ref|YP_001321085.1| extracellular solute-binding protein, putative [Alkaliphilus
metalliredigens QYMF]
gi|149950898|gb|ABR49426.1| extracellular solute-binding protein, putative [Alkaliphilus
metalliredigens QYMF]
Length = 417
Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats.
Identities = 88/352 (25%), Positives = 148/352 (42%), Gaps = 43/352 (12%)
Query: 1 MQKNIRKLVSIGLTAAAFAVTNFALAA---TDLSGKSWSEIEALAKKEGKVTVSVWYLQP 57
M+K I L+ GL + A+ A DL KSW I L + EG +
Sbjct: 9 MRKIILFLLIAGLIFNLAGCSQEAVVAGGNEDLLEKSWKSI--LEEAEGTEISFYGWGGS 66
Query: 58 QFRN------FVKEFESQYGIKVKVPEGTMDGNINKLIAEKNLE-TGKMDVVVLNADRLS 110
Q N V + +Y I + +D +NKL+ EK + TG DV+ +N + S
Sbjct: 67 QMTNDWLDNFLVPRLKEEYNITLNRVPMDIDQVLNKLLGEKQMNVTGTADVIWINGENFS 126
Query: 111 NVAKNDTLTK--LNQLPNFDKLNHHLQGVELGDVAVGY------------WGN-QTGLAY 155
ND L ++LPNF+ Q ++ V V Y +G Q L Y
Sbjct: 127 TARSNDLLYGPFTHKLPNFN------QYIDAESVEVKYDFGFPVEGYEAPYGKAQFVLVY 180
Query: 156 DPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDK 215
D R+ E++P+ +++ + +P KF Y P +G+AFI+ + I G + T +
Sbjct: 181 DEARV--EQVPKGHEELMELVKNNPGKFTYPAPP-DFTGSAFIRNIIYDIVGYEQFITME 237
Query: 216 IDEAQIA-SWKKTWDWFSSKKDSLIRTASN-ADSLTRLN----DGELVIVSAWQDHLFSL 269
D+ IA + + D+ K L R ++ +L+ D E+ + + + +
Sbjct: 238 ADKEVIAKAIQPAMDYLKELKPYLWRNGETYPATIAQLDNMYADHEVFMSMNYNPNEAAA 297
Query: 270 Q-KQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQ 320
+ K G ++ + G G + + + N PN A +L + +I S E Q
Sbjct: 298 RIKTGEFPRTTNTFVFEKGTIGNTHFLAIPDNAPNKAGALAVIDFILSVEAQ 349
>gi|77459367|ref|YP_348874.1| extracellular solute-binding protein, family 1 [Pseudomonas
fluorescens PfO-1]
gi|77383370|gb|ABA74883.1| extracellular solute-binding protein, family 1 [Pseudomonas
fluorescens PfO-1]
Length = 350
Score = 58.9 bits (141), Expect = 6e-07, Method: Composition-based stats.
Identities = 67/310 (21%), Positives = 128/310 (41%), Gaps = 33/310 (10%)
Query: 61 NFVKEFESQYGIKVKVPEGTMDG--NINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTL 118
+ + +FE + GIKV TMDG + L+A+ DV+V + + + K D L
Sbjct: 43 DLLAKFEKETGIKV-----TMDGYDSNETLLAKLQAGGAAYDVIVPSQSIMQTLIKQDLL 97
Query: 119 TKLN--QLPNFDKLNHHLQGVELG---DVAVGYWGNQTGLAYDPLRIKEEELPQSWQDME 173
+++ L NF + + + Y TG +YD R+ +L SW++
Sbjct: 98 LEIDAPTLSNFQYVKGPFRDPSFDPGRKFSAPYLWGTTGFSYDSARVPGGKLDDSWKEF- 156
Query: 174 NYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWKKTWDWFSS 233
P+K + ++ I A Y+N D T+ EA K+ +
Sbjct: 157 ----FEPRKELQGQLAALDTSSSVINAASHYLN--VDECTENPQEA-----KRILELLQK 205
Query: 234 KKDSLIRTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGN 293
+K ++ S+ +++ R+ GE++++ W S + +K+ PK G+ +
Sbjct: 206 QK-PFLKMYSSDNTVDRMASGEVIMMQNWNG---STARATLQKSTIKYVYPKEGLAMFQD 261
Query: 294 VMTVAKNTPNPAVSLVFVHWITSPEVQQKLSQEFGVRPLDSQSGLKDTIFFSAPWRKAEM 353
V K+ P+P + +F+ W+ PE +S +G++ A W+ +
Sbjct: 262 NFAVPKSAPHPGNARIFIDWMMKPENAAAVSNAIAY-----ANGIQSDQLLDAKWKVMDA 316
Query: 354 ESFTKEVISR 363
+ +E SR
Sbjct: 317 INMPEEYASR 326
>gi|51244175|ref|YP_064059.1| similar to ABC transporter, periplasmic substrate-binding protein
[Desulfotalea psychrophila LSv54]
gi|50875212|emb|CAG35052.1| related to ABC transporter, periplasmic substrate-binding protein
[Desulfotalea psychrophila LSv54]
Length = 416
Score = 58.2 bits (139), Expect = 8e-07, Method: Composition-based stats.
Identities = 77/324 (23%), Positives = 149/324 (45%), Gaps = 47/324 (14%)
Query: 34 SWSEIEALAKKEGKVTVSVWYLQPQFRNFV----KEFESQYGIKVK-VPEGTMDGNINKL 88
+W++IE A+ + + + W ++V + + +YGI+VK V + + +L
Sbjct: 43 AWAQIEGEARGQ-TIYFNAWGGSEPINDYVSWASRRAQEKYGIEVKHVKVTDIAEVVGRL 101
Query: 89 IAEKN---LETGKMDVVVLNADRLSNVAKNDTLTKL--NQLPNFDKLNHHLQGVELGDVA 143
+ EK+ L+ G++D++ +N + + K+D L ++ N LPN ++ V+ D
Sbjct: 102 LVEKSAGRLDGGRVDLLWINGENFQQLKKSDLLYQVPRNLLPNAALVDWQKPTVQR-DFT 160
Query: 144 V---GY---WG-NQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNA 196
V GY WG Q YD + + P S +++ + + HP +F Y P G A
Sbjct: 161 VPVDGYETPWGMAQLVFMYDTDVLAQP--PHSMEELLVFAEAHPGRFTYPAPPS-FYGTA 217
Query: 197 FIQRALVYINGDYDYRTDKIDEAQIASWKKT---------WDWFSS------KKDSLIRT 241
F+++ L+ + EA +A KK W + +K + T
Sbjct: 218 FLKQLLL--------ESISEPEALLAPVKKEDFSRVTAPLWHYLDRLHPLMWRKGNTFVT 269
Query: 242 ASNADSLTRLNDGELVIVSAWQDHLFSLQ-KQGAITDRLKFYIPKFGMPGGGNVMTVAKN 300
+S A ++ L++ E+ I ++ + S + G + D ++ Y+ G + + V +N
Sbjct: 270 SSPA-LVSLLDNREIFIAYSFNPNEASRAIENGELPDSVRTYVHSSGSLANTHFLAVPRN 328
Query: 301 TPNPAVSLVFVHWITSPEVQQKLS 324
+ N A +LVF++ + SPE Q + S
Sbjct: 329 SSNRAAALVFINMLLSPEAQAQKS 352
>gi|120601582|ref|YP_965982.1| extracellular solute-binding protein, putative [Desulfovibrio
vulgaris subsp. vulgaris DP4]
gi|120561811|gb|ABM27555.1| extracellular solute-binding protein, putative [Desulfovibrio
vulgaris subsp. vulgaris DP4]
Length = 439
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 44/326 (13%)
Query: 25 LAATDLSGKSWSEIEALAKKE--------GKVTVSVW---YLQPQFRNFVKEFESQYGIK 73
+A +W++IE A+ G V+ W ++ P+ + ++GI+
Sbjct: 58 VAPPGFENTTWTDIEKSARGTTVRMFMYGGFAHVNRWMDAWVAPRL-------QERHGIR 110
Query: 74 V-KVPEGTMDGNI--NKLIAEKNL--ETGKMDVVVLNADRLSNVAKNDTLTK--LNQLPN 126
+ +VP MD + N+L+AEK +TG MD++ +N + N + L LP+
Sbjct: 111 LERVP---MDAAVFVNRLLAEKQAGRDTGTMDLLWINGENFRNAREAGLLWGPFSGALPS 167
Query: 127 FDKLNHHLQGVELGDVAVGY---WGN-QTGLAYDPLRIKEEELPQSWQDMENYIDKHPKK 182
+ + ++ G GY WG+ Q L YD R E P+S +++ +I HP +
Sbjct: 168 SALVEAGHRDMDFGYPVEGYESPWGSAQLVLEYDTARTPEP--PRSVEELAAWIKAHPGR 225
Query: 183 FGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQI-ASWKKTWDWFSSKKDSLI-- 239
F Y P +G+AF+++ L + G ++ D+A + W + + K L
Sbjct: 226 FTYPQPP-DFTGSAFVRQLLYAVTGGHEQYMGAFDKALFDTKTPQLWAFLNDLKPYLWQE 284
Query: 240 -----RTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNV 294
R A+ DSL + + I S H + +G ++ + + G +
Sbjct: 285 GRAYPRDAAMQDSLFARGEVDFSI-SYHPVHAQANVGEGTYPPTVRTLVLREGSIRNTHF 343
Query: 295 MTVAKNTPNPAVSLVFVHWITSPEVQ 320
+ + N PN A ++V ++ SPE Q
Sbjct: 344 VAIPFNAPNRAGAMVVADFLLSPEAQ 369
>gi|78355806|ref|YP_387255.1| extracellular solute-binding protein, putative [Desulfovibrio
desulfuricans G20]
gi|78218211|gb|ABB37560.1| extracellular solute-binding protein, putative [Desulfovibrio
desulfuricans G20]
Length = 429
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 28/284 (9%)
Query: 85 INKLIAEK--NLETGKMDVVVLNADRLSNVAKNDTLTK--LNQLPNFDKLNHHLQGVELG 140
+NKL+ EK +TG +D++ +N + N ++ L +LPN ++ + G
Sbjct: 109 VNKLLTEKAAGKQTGTIDLMWINGENFRNARESGVLYGPFAGRLPNMRYVDAAAVATDFG 168
Query: 141 DVAVGYWG----NQTGLAYDPLRIKEEELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNA 196
Y Q YD R+ P S+ ++ ++I +HP +F Y P +G+A
Sbjct: 169 YPVQEYEAPLGRAQFVFEYDTARVSSP--PASFDELRSWIREHPGRFTYPQPPD-FTGSA 225
Query: 197 FIQRALVYINGDYD-YRTDKIDEAQIASWKKTWDWFSSKKD-------SLIRTASNADSL 248
F+++ + G ++ Y TD W W + K S+ + + D+L
Sbjct: 226 FVRQVFYAVTGGHEQYMTDFDGGLWDRQAPALWLWLNEIKPFMWQQGVSMPKDPAALDTL 285
Query: 249 TRLNDGELVIVSAWQ-DHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMTVAKNTPNPAVS 307
GE+ A+ H S +G D ++ ++ + G + +A N PN A +
Sbjct: 286 --FARGEVDFSMAYHPSHAQSKILEGTYPDTVRTFVMQDGSLYNTHFTAIAFNAPNKAGA 343
Query: 308 LVFVHWITSPEVQ-QKLSQ----EFGVRPLDSQSGLKDTIFFSA 346
+V ++ SP+ Q KLS +F V +D S D FSA
Sbjct: 344 MVLADFLLSPQAQAHKLSPANWGDFPVLEMDRLSE-ADRELFSA 386
>gi|150398470|ref|YP_001328937.1| hypothetical protein Smed_3278 [Sinorhizobium medicae WSM419]
gi|150029985|gb|ABR62102.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
Length = 408
Score = 55.8 bits (133), Expect = 5e-06, Method: Composition-based stats.
Identities = 76/338 (22%), Positives = 140/338 (41%), Gaps = 37/338 (10%)
Query: 8 LVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRNFVK--- 64
++S+GL A AF+ GK W + A A+ + V + W +++
Sbjct: 13 MLSLGLAAGAFSAD---------PGK-WKAVVAQARGQ-TVYFNAWGGAANINAYIEWAG 61
Query: 65 -EFESQYGIKV-KVPEGTMDGNINKLIAEKNL---ETGKMDVVVLNADRLSNVAKNDTLT 119
E +S+YG+ V V ++AEK E G +D+V +N + + + + L
Sbjct: 62 DEMKSRYGVTVVHVKLDDTAKAAGTVLAEKAAGKDEHGAVDLVWINGENFAAMKREGLLY 121
Query: 120 K---LNQLPNFDKLNHHLQGVELGDVAV------GYWGN-QTGLAYDPLRIKEEELPQSW 169
+LPN+ ++ + L D + WG + YD R + ELP S
Sbjct: 122 GPDWATKLPNWRYVDTENKPTVLTDFTIPTEGLESPWGGAKLVFFYDQARTQATELPDSA 181
Query: 170 QDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQI-ASWKKTW 228
D+ + + +P +F Y P +G++F+++ L + D +D+A +
Sbjct: 182 ADLLKWAEANPGRFSYPQPP-DFTGSSFLKQVLSEVVSDRSKLQTPVDDATFDTDVAPLF 240
Query: 229 DWFSSKKDSLIRTA-----SNADSLTRLNDGELVIVSAWQD-HLFSLQKQGAITDRLKFY 282
D+ L R + AD +L DGEL I+ A+ S G + + ++ +
Sbjct: 241 DYLDKLTPHLWRKGKAFPQNYADMKQKLADGELDIIFAFNPAEASSAIADGELPETVRSF 300
Query: 283 IPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQ 320
+ G G + + + N A +L+ ++ SPE Q
Sbjct: 301 VFSGGTLGNTHFVAIPYNATAKAGALLLADFLLSPEAQ 338
>gi|46581183|ref|YP_011991.1| extracellular solute-binding protein, putative [Desulfovibrio
vulgaris subsp. vulgaris str. Hildenborough]
gi|46450604|gb|AAS97251.1| extracellular solute-binding protein, putative [Desulfovibrio
vulgaris subsp. vulgaris str. Hildenborough]
Length = 461
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 77/326 (23%), Positives = 141/326 (43%), Gaps = 44/326 (13%)
Query: 25 LAATDLSGKSWSEIEALAKKE--------GKVTVSVW---YLQPQFRNFVKEFESQYGIK 73
+A +W++IE A+ G V+ W ++ P+ + ++GI+
Sbjct: 80 VAPPGFENTTWTDIEKSARGTTVRMFMYGGFAHVNRWMDAWVAPRL-------QERHGIR 132
Query: 74 V-KVPEGTMDGNI--NKLIAEKNL--ETGKMDVVVLNADRLSNVAKNDTLTK--LNQLPN 126
+ +VP MD + N+L+AEK +TG MD++ +N + N + L LP+
Sbjct: 133 LERVP---MDAAVFVNRLLAEKQAGRDTGTMDLLWINGENFRNAREAGLLWGPFSGALPS 189
Query: 127 FDKLNHHLQGVELGDVAVGY---WGN-QTGLAYDPLRIKEEELPQSWQDMENYIDKHPKK 182
+ + ++ G GY WG+ Q L YD R E P+S +++ +I HP +
Sbjct: 190 SALVEAGHRDMDFGYPVEGYESPWGSAQLVLEYDTARTPEP--PRSVEELAAWIKAHPGR 247
Query: 183 FGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQI-ASWKKTWDWFSSKKDSLI-- 239
F Y P +G+AF+++ L G ++ D+A + W + + K L
Sbjct: 248 FTYPQPP-DFTGSAFVRQLLYAATGGHEQYMGAFDKALFDTKTPQLWAFLNGLKPYLWQE 306
Query: 240 -----RTASNADSLTRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNV 294
R A+ DSL + + I S H + +G ++ + + G +
Sbjct: 307 GRAYPRDAAMQDSLFARGEVDFSI-SYHPVHAQANIGEGTYPPTVRTLVLREGSIRNTHF 365
Query: 295 MTVAKNTPNPAVSLVFVHWITSPEVQ 320
+ + N PN A ++V +++ SPE Q
Sbjct: 366 VAIPFNAPNRAGAMVVANFLLSPEAQ 391
>gi|59713280|ref|YP_206055.1| ABC transporter substrate-binding protein [Vibrio fischeri ES114]
gi|59481528|gb|AAW87167.1| ABC transporter substrate-binding protein [Vibrio fischeri ES114]
Length = 381
Score = 55.1 bits (131), Expect = 7e-06, Method: Composition-based stats.
Identities = 77/339 (22%), Positives = 147/339 (43%), Gaps = 34/339 (10%)
Query: 6 RKLVSIGLTAAAFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQFRNFV-- 63
++L +IG+ A+ FA ++F ATD W++IE A+ + V W + +++
Sbjct: 3 KQLTTIGIMASLFATSSF---ATD-----WTQIEKEAQGQ-TVYFHAWGGSQEINHYLQW 53
Query: 64 --KEFESQYGIKVK-VPEGTMDGNINKLIAEKNLE---TGKMDVVVLNADRLSNVAKNDT 117
KE +S+Y + +K V + I +LIAEK + G +D+V +N + ++ N
Sbjct: 54 ANKELQSKYQVTLKHVKVSDISETIPRLIAEKAADKNTNGSVDMVWINGENFKSMKDNQL 113
Query: 118 LTK--LNQLPNFDKLNHHLQ-GVELGDVAVGY---WG-NQTGLAYDPLRIKEEELPQSWQ 170
L LP++ ++ L V+ + G WG Q +D + P S+
Sbjct: 114 LFGPFTENLPSWKYVDKMLPIDVDFSEPTDGLEAPWGVGQLVFIHDSENLTNP--PHSFA 171
Query: 171 DMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQI-ASWKKTWD 229
+M +Y K P Y P G + ++ L+ + + + E+ A WD
Sbjct: 172 EMLSYAQKKPNSLSYPRPP-EFHGTSVLKSMLIELTNNNPALQKPVSESDFNAVTAPLWD 230
Query: 230 WFSSKKDSLIR-----TASNADSLTRLNDGEL-VIVSAWQDHLFSLQKQGAITDRLKFYI 283
+ R A ++++ L+DG+L + V+ + ++S Q G + + K Y
Sbjct: 231 YLEKFHKVAWRGGKQFPAGTSETIQLLDDGQLDLAVTFNPNAVYSAQANGNLANTTKAYA 290
Query: 284 PKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQQK 322
G + + + N A + V ++++ SPE Q +
Sbjct: 291 MDSGALSNIHFLAIPWNAKASAGAQVAINFLLSPEAQSR 329
>gi|148979506|ref|ZP_01815563.1| hypothetical protein VSWAT3_05076 [Vibrionales bacterium SWAT-3]
gi|145961784|gb|EDK27079.1| hypothetical protein VSWAT3_05076 [Vibrionales bacterium SWAT-3]
Length = 392
Score = 55.1 bits (131), Expect = 8e-06, Method: Composition-based stats.
Identities = 81/346 (23%), Positives = 149/346 (43%), Gaps = 30/346 (8%)
Query: 1 MQKNIRKLVS-IGLTAA-AFAVTNFALAATDLSGKSWSEIEALAKKEGKVTVSVWYLQPQ 58
M+K + K+VS +G+ A A++ T +A AT S SW++IE A+ + V W +
Sbjct: 1 MEKFMNKIVSTLGIMATVAYSATIYADEAT--STDSWNQIEQQAEGQ-TVYFHAWGGSQE 57
Query: 59 FRNFV----KEFESQYGIKVK-VPEGTMDGNINKLIAEKNL---ETGKMDVVVLNADRLS 110
++ K+ +S YG+ +K V + +L+AEK G +D+V +N +
Sbjct: 58 INRYLQWAGKKLQSDYGVTLKHVKVTDIAETATRLLAEKAAGKNSEGSVDIVWINGENFR 117
Query: 111 NVAKNDTLTK--LNQLPNFDKLNHHLQ-GVELGDVAVGY---WG-NQTGLAYDPLRIKEE 163
++ N L LPN+ ++ L V+ + G WG Q +D +
Sbjct: 118 SMKDNKLLFGPFTESLPNWKYVDKSLPIDVDFSEPTEGLEAPWGVGQLVFIHDQETLHNP 177
Query: 164 ELPQSWQDMENYIDKHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQI-A 222
PQS+ +M +Y P + Y P G +FI+ L+ + + + E A
Sbjct: 178 --PQSFSEMLSYAQAFPNRLSYPRPP-EFHGTSFIKSLLIELTNNSPELAKPVSEENFQA 234
Query: 223 SWKKTWDWFSSKKDSLIR-----TASNADSLTRLNDGELVIVSAWQ-DHLFSLQKQGAIT 276
W + R A ++S+ L+DG+L + + + ++S Q G +
Sbjct: 235 ITAPLWAYLDKFHKVAWRGGKQFPAGTSESIQLLDDGQLDLAITFNPNSVYSAQSSGRLA 294
Query: 277 DRLKFYIPKFGMPGGGNVMTVAKNTPNPAVSLVFVHWITSPEVQQK 322
+ K Y + G + + + N A + V ++++ SPE Q +
Sbjct: 295 ETTKAYALENGALSNIHFLAIPWNANATAGAQVTINFLLSPEAQSR 340
>gi|52078845|ref|YP_077636.1| putative extracellular solute-binding protein [Bacillus
licheniformis ATCC 14580]
Length = 362
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 24/264 (9%)
Query: 63 VKEFESQYGIKVKVPEGTMDGNINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTLTKLN 122
++ FE + G+KVKV GT KL A N D+++L D + L ++
Sbjct: 55 LESFEKETGLKVKVVAGTDSEWFTKLKAS-NGRNAPYDLLILQPDTIHRAQSAGLLAPID 113
Query: 123 Q--LPNFDKLNHHLQGVELGD---VAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYID 177
Q +PN L H +Q D A G+ Q G+ Y + +E P+ W D+ N
Sbjct: 114 QEKVPNVRDLYHSVQKRFTDDGKQYAAGFSMGQLGIVYRKDLVPQE--PKRWTDLWN--S 169
Query: 178 KHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWKKTWDWFSSKKDS 237
+ S P + F+ L+ G + +D+A ++ + K++
Sbjct: 170 SYKGHVAISSPAYSAGLQFFV--GLINAQGGLESNGKDVDKA--------FNSLADLKNN 219
Query: 238 LIRTASNADSL-TRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMT 296
+ N S+ T L G+ +V W FSLQ G L F P+ G
Sbjct: 220 ITAYPDNPGSIQTLLERGDAWVVPFWDGRAFSLQDAGL---DLGFAYPEEGAVAAVASWA 276
Query: 297 VAKNTPNPAVSLVFVHWITSPEVQ 320
+ K +PN + ++ + SPEVQ
Sbjct: 277 LMKGSPNQDNAYKLLNHLLSPEVQ 300
>gi|52784219|ref|YP_090048.1| hypothetical protein BLi00397 [Bacillus licheniformis ATCC 14580]
gi|52346721|gb|AAU39355.1| putative protein [Bacillus licheniformis DSM 13]
gi|145902724|gb|AAU21998.2| putative extracellular solute-binding protein [Bacillus
licheniformis ATCC 14580]
Length = 360
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 66/264 (25%), Positives = 107/264 (40%), Gaps = 24/264 (9%)
Query: 63 VKEFESQYGIKVKVPEGTMDGNINKLIAEKNLETGKMDVVVLNADRLSNVAKNDTLTKLN 122
++ FE + G+KVKV GT KL A N D+++L D + L ++
Sbjct: 53 LESFEKETGLKVKVVAGTDSEWFTKLKAS-NGRNAPYDLLILQPDTIHRAQSAGLLAPID 111
Query: 123 Q--LPNFDKLNHHLQGVELGD---VAVGYWGNQTGLAYDPLRIKEEELPQSWQDMENYID 177
Q +PN L H +Q D A G+ Q G+ Y + +E P+ W D+ N
Sbjct: 112 QEKVPNVRDLYHSVQKRFTDDGKQYAAGFSMGQLGIVYRKDLVPQE--PKRWTDLWN--S 167
Query: 178 KHPKKFGYSDPNGGSSGNAFIQRALVYINGDYDYRTDKIDEAQIASWKKTWDWFSSKKDS 237
+ S P + F+ L+ G + +D+A ++ + K++
Sbjct: 168 SYKGHVAISSPAYSAGLQFFV--GLINAQGGLESNGKDVDKA--------FNSLADLKNN 217
Query: 238 LIRTASNADSL-TRLNDGELVIVSAWQDHLFSLQKQGAITDRLKFYIPKFGMPGGGNVMT 296
+ N S+ T L G+ +V W FSLQ G L F P+ G
Sbjct: 218 ITAYPDNPGSIQTLLERGDAWVVPFWDGRAFSLQDAGL---DLGFAYPEEGAVAAVASWA 274
Query: 297 VAKNTPNPAVSLVFVHWITSPEVQ 320
+ K +PN + ++ + SPEVQ
Sbjct: 275 LMKGSPNQDNAYKLLNHLLSPEVQ 298
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.315 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,391,780,008
Number of Sequences: 5470121
Number of extensions: 60519106
Number of successful extensions: 155066
Number of sequences better than 1.0e-05: 46
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 155022
Number of HSP's gapped (non-prelim): 48
length of query: 363
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 229
effective length of database: 1,161,091,510
effective search space: 265889955790
effective search space used: 265889955790
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)